RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5317
         (101 letters)



>d3bzna1 d.161.1.1 (A:2-429) Menaquinone-specific isochorismate
          synthase MenF {Escherichia coli [TaxId: 562]}
          Length = 428

 Score = 25.9 bits (56), Expect = 0.91
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 14 LREYFESLELISAFS--PLFY-------SAVLTSGLTCAFSSLQEAPRVFRHLSKDGLYP 64
          L++ F++L  +++    P FY          +  G    F+SL +A R  R   +     
Sbjct: 33 LKDAFDALSWLASQQTYPQFYWQQRNGDEEAVVLGAITRFTSLDQAQRFLRQHPEHADLR 92

Query: 65 YIGWF 69
            G  
Sbjct: 93 IWGLN 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 346,544
Number of extensions: 13116
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 3
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)