Query psy5318
Match_columns 176
No_of_seqs 199 out of 1851
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 23:34:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628|consensus 99.7 3.3E-17 7.1E-22 135.6 6.2 79 71-149 203-283 (348)
2 PF13639 zf-RING_2: Ring finge 99.6 2.5E-16 5.3E-21 94.0 1.9 43 98-140 2-44 (44)
3 PHA02929 N1R/p28-like protein; 99.4 8.5E-13 1.8E-17 105.0 6.4 69 76-144 151-227 (238)
4 COG5540 RING-finger-containing 99.3 5.3E-13 1.1E-17 107.7 3.2 51 95-145 322-373 (374)
5 PF12678 zf-rbx1: RING-H2 zinc 99.3 7.1E-13 1.5E-17 87.4 3.2 45 96-140 19-73 (73)
6 COG5243 HRD1 HRD ubiquitin lig 99.2 7.7E-12 1.7E-16 103.5 4.3 52 94-145 285-346 (491)
7 KOG0317|consensus 99.2 7.2E-12 1.6E-16 100.7 3.5 52 93-147 236-287 (293)
8 PLN03208 E3 ubiquitin-protein 99.2 1.7E-11 3.6E-16 94.2 4.0 52 94-148 16-83 (193)
9 PF13920 zf-C3HC4_3: Zinc fing 99.2 1.6E-11 3.5E-16 75.0 2.3 46 96-144 2-48 (50)
10 PF13923 zf-C3HC4_2: Zinc fing 99.1 4.4E-11 9.6E-16 69.3 2.3 39 99-139 1-39 (39)
11 cd00162 RING RING-finger (Real 99.1 1.1E-10 2.3E-15 68.6 3.5 44 98-143 1-45 (45)
12 KOG0823|consensus 99.1 7.1E-11 1.5E-15 92.4 2.8 52 94-148 45-99 (230)
13 PF15227 zf-C3HC4_4: zinc fing 99.0 1.1E-10 2.3E-15 68.8 2.2 38 99-139 1-42 (42)
14 KOG0320|consensus 99.0 9.8E-11 2.1E-15 88.2 2.3 53 94-147 129-181 (187)
15 PF12861 zf-Apc11: Anaphase-pr 99.0 2.6E-10 5.6E-15 76.5 3.5 52 95-146 20-84 (85)
16 smart00504 Ubox Modified RING 99.0 3.5E-10 7.5E-15 72.0 3.8 48 97-147 2-49 (63)
17 PF14634 zf-RING_5: zinc-RING 99.0 4.8E-10 1E-14 66.7 3.0 44 98-141 1-44 (44)
18 PHA02926 zinc finger-like prot 98.9 5.1E-10 1.1E-14 87.3 2.9 53 94-146 168-232 (242)
19 KOG0802|consensus 98.9 4.5E-10 9.8E-15 99.6 2.6 53 94-146 289-343 (543)
20 COG5194 APC11 Component of SCF 98.9 1.4E-09 3.1E-14 71.4 3.0 49 99-147 34-84 (88)
21 PF00097 zf-C3HC4: Zinc finger 98.9 9.4E-10 2E-14 64.2 1.9 39 99-139 1-41 (41)
22 TIGR00599 rad18 DNA repair pro 98.9 1.6E-09 3.5E-14 92.0 3.9 52 92-146 22-73 (397)
23 smart00184 RING Ring finger. E 98.8 3.6E-09 7.8E-14 59.9 3.0 38 99-139 1-39 (39)
24 KOG1734|consensus 98.6 7.3E-09 1.6E-13 82.8 0.3 54 95-148 223-285 (328)
25 COG5574 PEX10 RING-finger-cont 98.6 2.3E-08 5E-13 79.7 2.3 51 94-147 213-265 (271)
26 KOG0287|consensus 98.6 1.2E-08 2.5E-13 84.0 0.7 52 94-148 21-72 (442)
27 PF04564 U-box: U-box domain; 98.5 3.7E-08 8E-13 64.8 2.0 51 95-148 3-54 (73)
28 KOG1493|consensus 98.5 1.3E-08 2.8E-13 66.4 -0.4 51 95-145 19-82 (84)
29 PF13445 zf-RING_UBOX: RING-ty 98.5 5.1E-08 1.1E-12 57.6 2.2 34 99-133 1-35 (43)
30 KOG2164|consensus 98.5 4.4E-08 9.5E-13 84.4 2.7 49 96-147 186-239 (513)
31 KOG2930|consensus 98.5 3.7E-08 8E-13 67.8 1.6 30 117-146 81-110 (114)
32 smart00744 RINGv The RING-vari 98.5 9.6E-08 2.1E-12 58.0 2.7 42 98-140 1-49 (49)
33 COG5432 RAD18 RING-finger-cont 98.5 5.5E-08 1.2E-12 78.6 2.0 48 94-144 23-70 (391)
34 KOG0828|consensus 98.4 6.4E-08 1.4E-12 83.0 1.4 51 95-145 570-635 (636)
35 KOG0804|consensus 98.4 2.1E-07 4.6E-12 79.1 2.6 50 93-144 172-222 (493)
36 TIGR00570 cdk7 CDK-activating 98.4 3.1E-07 6.8E-12 75.5 3.5 52 96-147 3-57 (309)
37 KOG2177|consensus 98.3 2.4E-07 5.2E-12 74.4 1.4 45 93-140 10-54 (386)
38 PF11793 FANCL_C: FANCL C-term 98.3 1.4E-07 3.1E-12 61.6 -0.2 49 97-145 3-67 (70)
39 COG5219 Uncharacterized conser 98.2 2.9E-07 6.2E-12 84.3 0.6 52 93-144 1466-1523(1525)
40 KOG0311|consensus 98.1 4.6E-07 1E-11 75.0 -1.6 54 92-148 39-94 (381)
41 KOG4265|consensus 98.0 2.9E-06 6.4E-11 70.5 2.9 49 94-145 288-337 (349)
42 KOG0824|consensus 98.0 2.8E-06 6E-11 69.1 1.7 48 96-146 7-55 (324)
43 PF14835 zf-RING_6: zf-RING of 98.0 1.3E-06 2.9E-11 55.4 -0.1 48 96-147 7-54 (65)
44 KOG4445|consensus 97.9 1E-05 2.2E-10 65.9 3.6 53 95-147 114-189 (368)
45 KOG0827|consensus 97.9 4.8E-06 1E-10 69.9 1.6 47 97-143 5-55 (465)
46 KOG1039|consensus 97.8 7.6E-06 1.6E-10 68.6 1.5 53 94-146 159-223 (344)
47 KOG0978|consensus 97.8 4.7E-06 1E-10 75.1 0.1 50 94-146 641-691 (698)
48 KOG0825|consensus 97.7 5.9E-06 1.3E-10 74.6 -0.6 50 97-146 124-173 (1134)
49 KOG4172|consensus 97.7 5.5E-06 1.2E-10 50.7 -0.5 45 97-144 8-54 (62)
50 KOG1785|consensus 97.7 2.6E-05 5.6E-10 65.9 2.6 49 97-148 370-420 (563)
51 KOG4159|consensus 97.6 2.9E-05 6.2E-10 66.4 2.5 50 93-145 81-130 (398)
52 KOG1645|consensus 97.6 4.7E-05 1E-09 64.4 3.4 48 96-143 4-55 (463)
53 KOG0297|consensus 97.5 4.6E-05 1E-09 65.3 1.8 53 93-148 18-71 (391)
54 KOG1941|consensus 97.5 2.9E-05 6.3E-10 65.4 0.3 48 94-141 363-413 (518)
55 KOG3039|consensus 97.4 0.00019 4.1E-09 57.2 3.8 68 95-163 220-288 (303)
56 KOG2660|consensus 97.3 5.3E-05 1.2E-09 62.5 0.2 52 93-146 12-63 (331)
57 COG5152 Uncharacterized conser 97.3 7.7E-05 1.7E-09 57.6 0.6 45 97-144 197-241 (259)
58 KOG2879|consensus 97.2 0.00031 6.6E-09 56.8 3.7 53 92-146 235-289 (298)
59 PF11789 zf-Nse: Zinc-finger o 97.2 0.00016 3.4E-09 45.3 1.6 41 96-138 11-53 (57)
60 PF14570 zf-RING_4: RING/Ubox 97.2 0.00018 4E-09 43.2 1.5 44 99-143 1-47 (48)
61 KOG1813|consensus 97.2 0.00012 2.6E-09 59.6 0.6 47 97-146 242-288 (313)
62 KOG1428|consensus 97.1 0.00036 7.7E-09 67.1 2.8 52 94-145 3484-3545(3738)
63 PF04641 Rtf2: Rtf2 RING-finge 97.0 0.0013 2.8E-08 53.4 5.6 97 55-152 58-169 (260)
64 PF12906 RINGv: RING-variant d 96.9 0.00062 1.3E-08 40.8 1.7 40 99-139 1-47 (47)
65 PF10367 Vps39_2: Vacuolar sor 96.8 0.00042 9E-09 48.2 1.0 34 93-127 75-108 (109)
66 COG5222 Uncharacterized conser 96.8 0.0021 4.5E-08 52.8 4.9 42 97-141 275-318 (427)
67 KOG4692|consensus 96.8 0.0013 2.8E-08 55.0 3.6 49 94-145 420-468 (489)
68 KOG3970|consensus 96.8 0.0011 2.3E-08 52.4 2.9 51 95-146 49-107 (299)
69 PF05883 Baculo_RING: Baculovi 96.7 0.00073 1.6E-08 49.2 1.6 43 96-138 26-74 (134)
70 PHA02825 LAP/PHD finger-like p 96.7 0.0012 2.6E-08 49.3 2.8 49 94-146 6-61 (162)
71 PHA02862 5L protein; Provision 96.7 0.001 2.2E-08 49.0 2.0 46 97-146 3-55 (156)
72 PF14447 Prok-RING_4: Prokaryo 96.6 0.00091 2E-08 41.2 1.3 46 97-147 8-53 (55)
73 KOG1952|consensus 96.6 0.0011 2.3E-08 60.9 1.9 48 94-141 189-244 (950)
74 KOG4275|consensus 96.5 0.00087 1.9E-08 54.7 0.9 42 96-144 300-342 (350)
75 KOG1002|consensus 96.4 0.00087 1.9E-08 58.7 0.1 51 95-148 535-590 (791)
76 KOG4739|consensus 96.4 0.0017 3.6E-08 51.7 1.7 48 98-148 5-52 (233)
77 KOG1814|consensus 96.4 0.0013 2.8E-08 55.9 1.1 37 95-131 183-219 (445)
78 COG5236 Uncharacterized conser 96.3 0.0027 5.9E-08 53.1 2.7 49 93-144 58-108 (493)
79 PHA03096 p28-like protein; Pro 96.2 0.0018 4E-08 53.2 1.2 45 97-141 179-231 (284)
80 KOG1571|consensus 96.2 0.0032 6.9E-08 52.7 2.4 45 94-144 303-347 (355)
81 KOG4185|consensus 96.2 0.0033 7.2E-08 51.7 2.5 47 97-143 4-54 (296)
82 PF08746 zf-RING-like: RING-li 96.0 0.0068 1.5E-07 35.6 2.5 38 99-139 1-43 (43)
83 KOG0801|consensus 96.0 0.0024 5.2E-08 47.9 0.6 29 95-123 176-204 (205)
84 COG5175 MOT2 Transcriptional r 95.9 0.0046 9.9E-08 51.6 2.1 54 94-147 12-67 (480)
85 KOG3268|consensus 95.9 0.0043 9.3E-08 47.3 1.7 51 97-147 166-231 (234)
86 KOG0826|consensus 95.7 0.0083 1.8E-07 49.7 2.8 47 95-144 299-346 (357)
87 KOG0827|consensus 95.5 0.0014 3.1E-08 55.4 -2.5 51 97-147 197-248 (465)
88 KOG1940|consensus 95.4 0.0075 1.6E-07 49.2 1.5 45 97-141 159-204 (276)
89 PF14446 Prok-RING_1: Prokaryo 95.1 0.027 5.9E-07 34.6 3.0 43 96-142 5-50 (54)
90 PF10272 Tmpp129: Putative tra 95.0 0.058 1.3E-06 45.7 5.7 30 117-146 311-353 (358)
91 KOG2114|consensus 95.0 0.011 2.4E-07 54.5 1.4 41 97-142 841-881 (933)
92 KOG2932|consensus 94.9 0.011 2.4E-07 48.7 1.0 45 98-146 92-136 (389)
93 PF07800 DUF1644: Protein of u 94.9 0.03 6.4E-07 41.9 3.1 53 96-151 2-98 (162)
94 PF03854 zf-P11: P-11 zinc fin 94.6 0.01 2.2E-07 35.4 0.1 44 98-146 4-48 (50)
95 KOG3002|consensus 94.5 0.022 4.7E-07 47.2 1.9 45 94-145 46-92 (299)
96 KOG1001|consensus 94.5 0.011 2.4E-07 54.0 0.2 51 97-151 455-507 (674)
97 KOG3053|consensus 93.7 0.024 5.3E-07 45.6 0.7 51 94-144 18-82 (293)
98 KOG2034|consensus 93.6 0.033 7.2E-07 51.7 1.5 38 92-130 813-850 (911)
99 KOG0298|consensus 93.3 0.022 4.8E-07 54.7 -0.1 44 96-141 1153-1196(1394)
100 PF05290 Baculo_IE-1: Baculovi 93.3 0.054 1.2E-06 39.4 1.9 50 95-147 79-135 (140)
101 KOG2817|consensus 92.1 0.13 2.8E-06 43.9 2.8 54 93-146 331-387 (394)
102 KOG1812|consensus 91.7 0.1 2.2E-06 44.8 1.8 39 95-133 145-184 (384)
103 KOG4367|consensus 91.2 0.12 2.6E-06 44.7 1.7 34 94-130 2-35 (699)
104 KOG3800|consensus 91.1 0.19 4.2E-06 41.2 2.7 47 98-144 2-51 (300)
105 KOG0309|consensus 91.0 0.13 2.8E-06 47.3 1.8 25 114-138 1045-1069(1081)
106 KOG3161|consensus 90.5 0.068 1.5E-06 48.2 -0.4 43 96-141 11-54 (861)
107 KOG1100|consensus 90.3 0.13 2.8E-06 40.4 1.1 40 99-145 161-201 (207)
108 COG5220 TFB3 Cdk activating ki 90.2 0.12 2.6E-06 41.4 0.8 49 95-143 9-63 (314)
109 KOG4718|consensus 89.1 0.19 4.1E-06 39.4 1.2 46 96-144 181-227 (235)
110 PF02891 zf-MIZ: MIZ/SP-RING z 89.0 0.17 3.7E-06 30.5 0.7 43 97-142 3-50 (50)
111 COG5183 SSM4 Protein involved 87.9 0.29 6.3E-06 45.5 1.7 53 95-148 11-70 (1175)
112 KOG1609|consensus 87.6 0.31 6.6E-06 40.0 1.6 51 96-146 78-136 (323)
113 KOG3113|consensus 87.1 1.7 3.6E-05 35.2 5.3 51 96-148 111-162 (293)
114 KOG0802|consensus 86.5 0.45 9.7E-06 42.7 2.1 53 95-154 478-530 (543)
115 KOG3899|consensus 86.4 0.3 6.6E-06 40.2 0.9 31 117-147 325-368 (381)
116 KOG1829|consensus 86.3 0.2 4.3E-06 45.0 -0.3 43 96-142 511-559 (580)
117 KOG4362|consensus 85.4 0.19 4.2E-06 45.8 -0.8 48 96-146 21-71 (684)
118 PF06906 DUF1272: Protein of u 85.3 2.1 4.5E-05 26.5 4.0 47 97-145 6-53 (57)
119 PF00628 PHD: PHD-finger; Int 83.8 0.15 3.3E-06 30.4 -1.5 43 98-141 1-50 (51)
120 KOG2068|consensus 83.4 1.4 3.1E-05 36.8 3.5 55 96-150 249-304 (327)
121 PF10571 UPF0547: Uncharacteri 81.1 0.85 1.8E-05 23.7 0.9 22 98-121 2-24 (26)
122 PF07975 C1_4: TFIIH C1-like d 80.6 1.1 2.4E-05 27.2 1.5 42 99-140 2-50 (51)
123 KOG1812|consensus 80.6 0.87 1.9E-05 39.1 1.4 44 96-139 306-351 (384)
124 smart00132 LIM Zinc-binding do 80.5 1.6 3.5E-05 23.7 2.1 37 99-144 2-38 (39)
125 KOG0825|consensus 78.9 1.2 2.5E-05 41.6 1.6 54 95-148 95-158 (1134)
126 KOG0269|consensus 78.2 2.1 4.6E-05 39.6 3.1 44 98-142 781-826 (839)
127 PF13901 DUF4206: Domain of un 77.6 1.7 3.7E-05 33.9 2.1 40 96-141 152-197 (202)
128 PF07191 zinc-ribbons_6: zinc- 77.4 0.19 4E-06 32.6 -2.8 40 97-144 2-41 (70)
129 KOG1815|consensus 76.8 1.3 2.9E-05 38.6 1.4 37 94-132 68-104 (444)
130 KOG3579|consensus 76.1 1.4 3.1E-05 36.2 1.3 39 95-134 267-307 (352)
131 smart00249 PHD PHD zinc finger 75.4 2.2 4.8E-05 24.0 1.7 29 99-128 2-31 (47)
132 KOG3005|consensus 73.1 1.7 3.8E-05 35.3 1.1 48 97-144 183-243 (276)
133 KOG2807|consensus 72.5 3.2 6.9E-05 34.8 2.5 46 96-141 330-375 (378)
134 KOG2066|consensus 71.0 1.8 3.8E-05 40.3 0.8 44 96-140 784-831 (846)
135 TIGR00622 ssl1 transcription f 69.9 6.9 0.00015 27.7 3.4 44 97-140 56-110 (112)
136 PF06844 DUF1244: Protein of u 69.9 2.8 6.1E-05 26.8 1.3 12 120-131 11-22 (68)
137 PF01363 FYVE: FYVE zinc finge 68.6 1.8 4E-05 27.4 0.2 35 96-130 9-44 (69)
138 PF13719 zinc_ribbon_5: zinc-r 67.8 2.8 6.1E-05 23.5 0.9 13 98-110 4-16 (37)
139 COG5109 Uncharacterized conser 67.7 4.6 9.9E-05 33.8 2.4 50 93-142 333-385 (396)
140 KOG3039|consensus 67.3 4.7 0.0001 32.6 2.4 33 95-130 42-74 (303)
141 PF00412 LIM: LIM domain; Int 66.1 3.2 6.9E-05 25.0 1.0 40 99-147 1-40 (58)
142 cd00065 FYVE FYVE domain; Zinc 63.1 6.3 0.00014 23.7 1.9 34 97-130 3-37 (57)
143 PF05605 zf-Di19: Drought indu 61.3 3 6.4E-05 25.3 0.2 37 96-142 2-40 (54)
144 smart00064 FYVE Protein presen 58.7 9 0.0002 24.0 2.1 35 96-130 10-45 (68)
145 PF04423 Rad50_zn_hook: Rad50 58.2 3.8 8.3E-05 24.8 0.3 12 135-146 22-33 (54)
146 PF11023 DUF2614: Protein of u 56.8 10 0.00022 26.9 2.3 21 128-148 80-100 (114)
147 PF04710 Pellino: Pellino; In 56.2 3.7 8.1E-05 35.3 0.0 30 111-143 303-338 (416)
148 PLN02248 cellulose synthase-li 55.6 15 0.00032 35.9 3.8 35 114-148 145-181 (1135)
149 PLN02189 cellulose synthase 54.4 13 0.00028 36.0 3.2 48 97-144 35-87 (1040)
150 KOG3799|consensus 53.3 2.8 6E-05 30.7 -1.0 51 93-143 62-117 (169)
151 PF13832 zf-HC5HC2H_2: PHD-zin 51.2 10 0.00022 26.1 1.6 32 96-129 55-88 (110)
152 PF14569 zf-UDP: Zinc-binding 51.1 19 0.00041 23.8 2.7 49 96-144 9-62 (80)
153 PF07649 C1_3: C1-like domain; 50.0 12 0.00025 19.7 1.3 29 98-126 2-30 (30)
154 COG3813 Uncharacterized protei 49.4 25 0.00055 22.9 3.0 48 97-146 6-54 (84)
155 KOG2231|consensus 48.7 16 0.00035 33.7 2.8 52 98-152 2-60 (669)
156 PLN02436 cellulose synthase A 48.7 18 0.00039 35.2 3.2 49 96-144 36-89 (1094)
157 PF13771 zf-HC5HC2H: PHD-like 48.6 10 0.00022 25.1 1.2 33 96-128 36-68 (90)
158 PF04216 FdhE: Protein involve 47.8 1.5 3.3E-05 36.0 -3.5 42 96-142 172-220 (290)
159 PRK11088 rrmA 23S rRNA methylt 47.6 14 0.0003 29.8 2.1 25 97-121 3-27 (272)
160 KOG0956|consensus 46.6 9.2 0.0002 35.4 0.9 48 97-144 118-182 (900)
161 KOG2113|consensus 44.4 60 0.0013 27.4 5.2 44 95-143 342-386 (394)
162 PF13717 zinc_ribbon_4: zinc-r 44.4 11 0.00023 21.0 0.7 13 98-110 4-16 (36)
163 KOG0824|consensus 44.2 7.1 0.00015 32.4 -0.1 48 95-144 104-151 (324)
164 PF10083 DUF2321: Uncharacteri 43.7 11 0.00024 28.3 0.8 47 100-149 8-55 (158)
165 KOG1356|consensus 42.2 11 0.00024 35.5 0.7 56 86-143 219-281 (889)
166 PF10235 Cript: Microtubule-as 41.7 18 0.00038 24.7 1.5 37 97-145 45-81 (90)
167 PRK03564 formate dehydrogenase 40.3 17 0.00037 30.4 1.5 42 95-141 186-234 (309)
168 KOG0956|consensus 40.1 22 0.00048 33.0 2.3 30 112-141 41-70 (900)
169 cd04718 BAH_plant_2 BAH, or Br 40.1 9.8 0.00021 28.3 0.1 28 121-148 2-33 (148)
170 KOG1729|consensus 40.0 5.4 0.00012 33.0 -1.4 37 98-134 216-252 (288)
171 KOG4185|consensus 40.0 4.1 9E-05 33.3 -2.2 46 97-142 208-265 (296)
172 PF06750 DiS_P_DiS: Bacterial 39.6 29 0.00063 23.5 2.4 38 96-145 33-70 (92)
173 PLN02638 cellulose synthase A 39.1 32 0.0007 33.5 3.3 49 96-144 17-70 (1079)
174 PF14311 DUF4379: Domain of un 37.9 17 0.00037 21.9 0.9 22 117-139 34-55 (55)
175 PLN02915 cellulose synthase A 37.8 34 0.00073 33.3 3.2 50 95-144 14-68 (1044)
176 PF10497 zf-4CXXC_R1: Zinc-fin 37.7 19 0.00041 25.1 1.2 24 118-141 37-69 (105)
177 cd00350 rubredoxin_like Rubred 37.4 25 0.00054 18.9 1.4 9 133-141 17-25 (33)
178 COG3492 Uncharacterized protei 36.8 15 0.00032 25.1 0.5 12 120-131 42-53 (104)
179 PLN02195 cellulose synthase A 36.2 53 0.0012 31.8 4.2 49 96-144 6-59 (977)
180 smart00647 IBR In Between Ring 36.0 10 0.00022 23.0 -0.3 19 111-129 39-58 (64)
181 KOG1815|consensus 35.9 10 0.00023 33.1 -0.4 37 96-132 226-267 (444)
182 PF14353 CpXC: CpXC protein 35.5 50 0.0011 23.4 3.2 47 97-146 2-51 (128)
183 COG4847 Uncharacterized protei 35.4 43 0.00093 23.0 2.6 33 97-130 7-39 (103)
184 PF09889 DUF2116: Uncharacteri 35.3 21 0.00045 22.3 1.0 15 132-146 2-16 (59)
185 KOG1245|consensus 35.0 12 0.00026 37.6 -0.2 49 95-143 1107-1159(1404)
186 KOG3842|consensus 34.8 46 0.00099 28.1 3.2 51 96-146 341-416 (429)
187 KOG0289|consensus 34.2 33 0.00071 30.1 2.3 56 98-156 2-58 (506)
188 PF02318 FYVE_2: FYVE-type zin 33.1 22 0.00049 25.1 1.0 47 95-142 53-103 (118)
189 PLN02400 cellulose synthase 32.7 57 0.0012 32.0 3.8 50 96-145 36-90 (1085)
190 TIGR01562 FdhE formate dehydro 32.6 21 0.00045 29.9 0.9 41 96-141 184-232 (305)
191 KOG1842|consensus 32.4 19 0.00041 31.6 0.6 36 93-128 177-213 (505)
192 KOG4443|consensus 32.1 20 0.00043 33.0 0.7 47 96-142 18-71 (694)
193 PF14169 YdjO: Cold-inducible 32.0 23 0.0005 22.1 0.8 15 132-146 38-52 (59)
194 KOG4323|consensus 32.0 17 0.00038 32.0 0.3 52 95-146 167-228 (464)
195 PF09538 FYDLN_acid: Protein o 31.6 26 0.00057 24.6 1.1 12 135-146 28-39 (108)
196 KOG2041|consensus 31.6 30 0.00065 32.5 1.8 46 94-143 1129-1184(1189)
197 KOG4218|consensus 30.0 24 0.00051 30.1 0.8 49 94-143 13-77 (475)
198 smart00734 ZnF_Rad18 Rad18-lik 29.8 23 0.00051 18.1 0.5 9 135-143 3-11 (26)
199 PF03107 C1_2: C1 domain; Int 29.2 32 0.00069 18.0 1.0 27 98-125 2-29 (30)
200 PF05715 zf-piccolo: Piccolo Z 29.2 39 0.00083 21.2 1.4 11 133-143 2-12 (61)
201 PRK11595 DNA utilization prote 29.0 51 0.0011 25.9 2.5 38 98-143 7-44 (227)
202 KOG1729|consensus 28.7 23 0.0005 29.3 0.5 51 95-145 167-226 (288)
203 KOG3726|consensus 28.6 27 0.00059 32.2 1.0 41 97-140 655-696 (717)
204 PF09297 zf-NADH-PPase: NADH p 28.1 7.5 0.00016 20.8 -1.7 7 135-141 23-29 (32)
205 COG5526 Lysozyme family protei 28.0 84 0.0018 23.7 3.3 57 5-62 52-115 (191)
206 KOG2169|consensus 27.7 58 0.0013 30.0 3.0 46 96-148 306-360 (636)
207 PF15616 TerY-C: TerY-C metal 27.3 36 0.00078 24.8 1.3 47 91-146 72-118 (131)
208 COG4098 comFA Superfamily II D 27.0 34 0.00074 29.4 1.2 39 94-136 37-75 (441)
209 PF06937 EURL: EURL protein; 26.8 54 0.0012 26.9 2.3 43 96-138 30-75 (285)
210 PRK04023 DNA polymerase II lar 26.4 38 0.00083 32.9 1.5 48 95-148 625-678 (1121)
211 KOG2979|consensus 26.2 33 0.00072 27.9 1.0 45 96-142 176-222 (262)
212 KOG1244|consensus 25.7 13 0.00029 30.5 -1.4 50 95-145 280-334 (336)
213 PF07282 OrfB_Zn_ribbon: Putat 25.4 54 0.0012 20.4 1.7 31 96-126 28-61 (69)
214 PF12773 DZR: Double zinc ribb 25.3 51 0.0011 19.1 1.5 11 134-144 30-40 (50)
215 smart00531 TFIIE Transcription 25.2 65 0.0014 23.6 2.4 14 134-147 124-137 (147)
216 PRK05978 hypothetical protein; 25.0 48 0.001 24.7 1.6 24 128-151 47-70 (148)
217 KOG4451|consensus 24.8 49 0.0011 26.6 1.7 28 121-148 251-278 (286)
218 PF00130 C1_1: Phorbol esters/ 24.6 43 0.00094 19.6 1.1 35 94-128 9-45 (53)
219 TIGR00686 phnA alkylphosphonat 24.4 47 0.001 23.4 1.4 11 97-107 3-13 (109)
220 PF09723 Zn-ribbon_8: Zinc rib 24.4 11 0.00025 21.5 -1.5 25 116-141 10-34 (42)
221 PRK02935 hypothetical protein; 23.8 72 0.0016 22.4 2.2 20 128-147 81-100 (110)
222 PF03119 DNA_ligase_ZBD: NAD-d 23.8 36 0.00078 17.7 0.5 11 135-145 1-11 (28)
223 PF03884 DUF329: Domain of unk 22.5 41 0.0009 20.8 0.7 11 135-145 4-14 (57)
224 PRK00418 DNA gyrase inhibitor; 22.4 60 0.0013 20.5 1.4 9 135-143 8-16 (62)
225 PF07227 DUF1423: Protein of u 22.3 60 0.0013 28.5 1.9 31 97-128 129-163 (446)
226 PF10146 zf-C4H2: Zinc finger- 22.2 69 0.0015 25.6 2.1 28 121-148 196-223 (230)
227 KOG1701|consensus 21.8 69 0.0015 28.1 2.1 43 97-147 395-441 (468)
228 PRK01343 zinc-binding protein; 21.7 48 0.001 20.6 0.9 12 133-144 9-20 (57)
229 COG5627 MMS21 DNA repair prote 21.7 51 0.0011 26.6 1.2 41 96-138 189-231 (275)
230 PF09986 DUF2225: Uncharacteri 21.6 32 0.00069 27.0 0.1 50 95-147 4-62 (214)
231 PF06170 DUF983: Protein of un 21.5 52 0.0011 22.1 1.1 23 128-150 3-25 (86)
232 PF09237 GAGA: GAGA factor; I 21.4 33 0.00072 20.9 0.1 9 135-143 26-34 (54)
233 PF09943 DUF2175: Uncharacteri 21.2 77 0.0017 22.0 1.9 32 98-130 4-35 (101)
234 PF12660 zf-TFIIIC: Putative z 21.2 18 0.00039 24.9 -1.3 52 97-149 15-71 (99)
235 COG4647 AcxC Acetone carboxyla 20.9 63 0.0014 23.6 1.5 22 100-124 61-82 (165)
236 KOG2071|consensus 20.6 48 0.001 30.1 1.0 35 95-129 512-556 (579)
237 KOG4577|consensus 20.6 23 0.0005 29.4 -0.9 39 97-144 93-131 (383)
238 TIGR00373 conserved hypothetic 20.4 23 0.00049 26.5 -1.0 17 131-147 126-142 (158)
239 COG2835 Uncharacterized conser 20.3 46 0.001 20.8 0.6 13 135-147 10-22 (60)
240 PRK11827 hypothetical protein; 20.3 38 0.00083 21.2 0.2 13 133-145 8-20 (60)
241 cd00029 C1 Protein kinase C co 20.1 72 0.0016 18.0 1.4 33 96-128 11-45 (50)
No 1
>KOG4628|consensus
Probab=99.69 E-value=3.3e-17 Score=135.62 Aligned_cols=79 Identities=30% Similarity=0.781 Sum_probs=66.1
Q ss_pred CCCCCCHHHHhcCCcccccccccCC-CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC-CCccccccccCCCc
Q psy5318 71 GPPPLSTDKIKQIPVAHITKAQIDS-NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSESA 148 (176)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~l~~~~~ 148 (176)
....+.++.+.+++...+.....+. ...|+||+|+|+.+++++.|||+|.||..||.+||..++ .||+||+.+.....
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSG 282 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence 4457788899999988887765432 248999999999999999999999999999999997775 59999998876654
Q ss_pred c
Q psy5318 149 E 149 (176)
Q Consensus 149 ~ 149 (176)
.
T Consensus 283 ~ 283 (348)
T KOG4628|consen 283 S 283 (348)
T ss_pred C
Confidence 3
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.60 E-value=2.5e-16 Score=94.02 Aligned_cols=43 Identities=47% Similarity=1.234 Sum_probs=40.2
Q ss_pred cCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccc
Q psy5318 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICR 140 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 140 (176)
+|+||++.+..++.++.++|+|.||..||.+|++.+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999999889999999999999999999999999999997
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.38 E-value=8.5e-13 Score=104.97 Aligned_cols=69 Identities=25% Similarity=0.563 Sum_probs=52.1
Q ss_pred CHHHHhcCCcccccccc---cCCCccCccccccccCCCc-----eEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 76 STDKIKQIPVAHITKAQ---IDSNLQCSVCWEQFTLDEA-----VRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 76 ~~~~~~~l~~~~~~~~~---~~~~~~C~IC~~~~~~~~~-----~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
.++.+..+|.....-+. ...+.+|+||++.+..++. .+..+|+|.||..||.+|++.+.+||+||.++.
T Consensus 151 ~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 151 YKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred hHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 66677777766544322 2346789999998765431 234469999999999999999999999999875
No 4
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.3e-13 Score=107.75 Aligned_cols=51 Identities=33% Similarity=1.040 Sum_probs=46.5
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHh-cCCCCccccccccC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHS 145 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~ 145 (176)
..-+|.||++.|...+.++++||+|.||..|+.+|+. .+..||+||.++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 3467999999999999999999999999999999997 77799999999875
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.34 E-value=7.1e-13 Score=87.44 Aligned_cols=45 Identities=36% Similarity=0.928 Sum_probs=35.4
Q ss_pred CccCccccccccCC----------CceEEecCCCcCCHHhHHHHHhcCCCCcccc
Q psy5318 96 NLQCSVCWEQFTLD----------EAVRKLPCDHFYHTPCIEPWLQLHGTCPICR 140 (176)
Q Consensus 96 ~~~C~IC~~~~~~~----------~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 140 (176)
+..|+||++.+... -.+...+|+|.||..||.+||+.+.+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 34599999998322 2345557999999999999999999999998
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=7.7e-12 Score=103.54 Aligned_cols=52 Identities=35% Similarity=0.947 Sum_probs=43.9
Q ss_pred CCCccCccccccc-cCC---------CceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 94 DSNLQCSVCWEQF-TLD---------EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 94 ~~~~~C~IC~~~~-~~~---------~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
.++..|.||++++ ..+ .+..++||||.+|.+|++.|++++++||+||.++.-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~if 346 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIF 346 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccc
Confidence 4677899999994 333 246789999999999999999999999999999543
No 7
>KOG0317|consensus
Probab=99.22 E-value=7.2e-12 Score=100.67 Aligned_cols=52 Identities=27% Similarity=0.758 Sum_probs=45.5
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 147 (176)
.+....|.+|++...++ ..+||||+||..||..|...+..||+||.++.+..
T Consensus 236 ~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 34567899999998776 78999999999999999999999999999987654
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.18 E-value=1.7e-11 Score=94.17 Aligned_cols=52 Identities=23% Similarity=0.731 Sum_probs=42.7
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc----------------CCCCccccccccCCCc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL----------------HGTCPICRQTLHSESA 148 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~----------------~~~CP~CR~~l~~~~~ 148 (176)
.++.+|+||++.+.++ ++++|||.||..||..|+.. ...||+||..+...+.
T Consensus 16 ~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L 83 (193)
T PLN03208 16 GGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL 83 (193)
T ss_pred CCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence 4567799999998766 77899999999999999842 2479999999976554
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.16 E-value=1.6e-11 Score=75.02 Aligned_cols=46 Identities=37% Similarity=0.884 Sum_probs=38.8
Q ss_pred CccCccccccccCCCceEEecCCCc-CCHHhHHHHHhcCCCCcccccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
+..|.||++.... +..+||||. ||..|+..|++....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4569999998654 588899999 999999999999999999999875
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.10 E-value=4.4e-11 Score=69.32 Aligned_cols=39 Identities=33% Similarity=0.957 Sum_probs=32.8
Q ss_pred CccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccc
Q psy5318 99 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPIC 139 (176)
Q Consensus 99 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~C 139 (176)
|+||++.+.+ .++.++|||.||..|+.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998874 45678899999999999999888899998
No 11
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=99.08 E-value=1.1e-10 Score=68.61 Aligned_cols=44 Identities=43% Similarity=1.179 Sum_probs=35.9
Q ss_pred cCccccccccCCCceEEecCCCcCCHHhHHHHHhc-CCCCccccccc
Q psy5318 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTL 143 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l 143 (176)
.|+||++.+. +.+...+|+|.||..|+..|++. ...||.||..+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999983 33444559999999999999987 67899999764
No 12
>KOG0823|consensus
Probab=99.06 E-value=7.1e-11 Score=92.39 Aligned_cols=52 Identities=23% Similarity=0.712 Sum_probs=43.5
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC---CCccccccccCCCc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSESA 148 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~CP~CR~~l~~~~~ 148 (176)
.....|.||++.-+++ +++.|||.||..||.+||..+. .||+|+..+..++.
T Consensus 45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 3456799999998776 7788999999999999996543 69999999877765
No 13
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.04 E-value=1.1e-10 Score=68.85 Aligned_cols=38 Identities=32% Similarity=0.884 Sum_probs=30.1
Q ss_pred CccccccccCCCceEEecCCCcCCHHhHHHHHhcCC----CCccc
Q psy5318 99 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG----TCPIC 139 (176)
Q Consensus 99 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~C 139 (176)
|+||++.|.++ +.++|||.||..||..|++... .||.|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999887 8899999999999999986542 59987
No 14
>KOG0320|consensus
Probab=99.03 E-value=9.8e-11 Score=88.17 Aligned_cols=53 Identities=21% Similarity=0.664 Sum_probs=43.3
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 147 (176)
+....|+|||+.+..... +-+.|||+||..||+..++....||+||+.+..+.
T Consensus 129 ~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~ 181 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ 181 (187)
T ss_pred ccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence 345779999999874421 33679999999999999999999999999886653
No 15
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=99.01 E-value=2.6e-10 Score=76.48 Aligned_cols=52 Identities=31% Similarity=0.749 Sum_probs=38.8
Q ss_pred CCccCccccccccC--------C-C-ceEEecCCCcCCHHhHHHHHhc---CCCCccccccccCC
Q psy5318 95 SNLQCSVCWEQFTL--------D-E-AVRKLPCDHFYHTPCIEPWLQL---HGTCPICRQTLHSE 146 (176)
Q Consensus 95 ~~~~C~IC~~~~~~--------~-~-~~~~lpC~H~Fh~~Ci~~wl~~---~~~CP~CR~~l~~~ 146 (176)
.+..|.||...|.. + + .++.-.|+|.||..||.+|+.. +..||+||++...+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 46779999988852 1 2 2333349999999999999975 45899999987543
No 16
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.01 E-value=3.5e-10 Score=71.99 Aligned_cols=48 Identities=33% Similarity=0.564 Sum_probs=42.3
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 147 (176)
..|+||.+.+.++ +.++|||+|+..||..|++.+.+||+|+.++..++
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~ 49 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHED 49 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence 4699999999876 77899999999999999988889999999885544
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.96 E-value=4.8e-10 Score=66.68 Aligned_cols=44 Identities=27% Similarity=0.842 Sum_probs=37.8
Q ss_pred cCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccc
Q psy5318 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 141 (176)
.|+||++.|.......+++|||+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 39999999955567788899999999999998756668999985
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.93 E-value=5.1e-10 Score=87.26 Aligned_cols=53 Identities=26% Similarity=0.778 Sum_probs=38.7
Q ss_pred CCCccCccccccccCC----C-ceEEe-cCCCcCCHHhHHHHHhcC------CCCccccccccCC
Q psy5318 94 DSNLQCSVCWEQFTLD----E-AVRKL-PCDHFYHTPCIEPWLQLH------GTCPICRQTLHSE 146 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~----~-~~~~l-pC~H~Fh~~Ci~~wl~~~------~~CP~CR~~l~~~ 146 (176)
..+.+|+||++..-.. + ...+| +|+|.||..||..|.+.+ .+||+||..+..-
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 4567899999976321 1 12334 599999999999998643 3599999987543
No 19
>KOG0802|consensus
Probab=98.92 E-value=4.5e-10 Score=99.62 Aligned_cols=53 Identities=32% Similarity=0.866 Sum_probs=45.3
Q ss_pred CCCccCccccccccCCCc--eEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 94 DSNLQCSVCWEQFTLDEA--VRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~--~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..+..|+||++.+..+.. ..+++|+|+||..|+..|+++.++||.||..+-..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDY 343 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence 347789999999987544 68899999999999999999999999999955433
No 20
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.88 E-value=1.4e-09 Score=71.35 Aligned_cols=49 Identities=33% Similarity=0.688 Sum_probs=36.5
Q ss_pred CccccccccCCCce-EEec-CCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318 99 CSVCWEQFTLDEAV-RKLP-CDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 99 C~IC~~~~~~~~~~-~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 147 (176)
|+-|.....+++.. +.-. |+|.||.+||.+||..++.||++|++.....
T Consensus 34 C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~ 84 (88)
T COG5194 34 CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD 84 (88)
T ss_pred CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence 55554444444433 3333 9999999999999999999999999886554
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.87 E-value=9.4e-10 Score=64.21 Aligned_cols=39 Identities=38% Similarity=1.018 Sum_probs=33.1
Q ss_pred CccccccccCCCceEEecCCCcCCHHhHHHHHh--cCCCCccc
Q psy5318 99 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ--LHGTCPIC 139 (176)
Q Consensus 99 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~--~~~~CP~C 139 (176)
|+||++.+... ...++|+|.||..|+.+|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 79999998755 24788999999999999998 45579987
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=1.6e-09 Score=92.03 Aligned_cols=52 Identities=27% Similarity=0.705 Sum_probs=44.6
Q ss_pred ccCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 92 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..+....|+||++.|..+ ++++|+|.||..||..|+.....||+||..+...
T Consensus 22 ~Le~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred ccccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 345667899999999766 6789999999999999998888999999987654
No 23
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.81 E-value=3.6e-09 Score=59.87 Aligned_cols=38 Identities=42% Similarity=1.128 Sum_probs=32.0
Q ss_pred CccccccccCCCceEEecCCCcCCHHhHHHHHh-cCCCCccc
Q psy5318 99 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ-LHGTCPIC 139 (176)
Q Consensus 99 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~C 139 (176)
|+||++.. .....++|+|.||..|+..|++ ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78998884 3447889999999999999997 56679987
No 24
>KOG1734|consensus
Probab=98.62 E-value=7.3e-09 Score=82.75 Aligned_cols=54 Identities=31% Similarity=0.762 Sum_probs=44.0
Q ss_pred CCccCccccccccCCC-------ceEEecCCCcCCHHhHHHHH--hcCCCCccccccccCCCc
Q psy5318 95 SNLQCSVCWEQFTLDE-------AVRKLPCDHFYHTPCIEPWL--QLHGTCPICRQTLHSESA 148 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~-------~~~~lpC~H~Fh~~Ci~~wl--~~~~~CP~CR~~l~~~~~ 148 (176)
++..|.||-..+.... ....|.|+|+||..||+-|- -++++||.|+++++.+.-
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rm 285 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRM 285 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhh
Confidence 4567999988775443 67889999999999999995 577899999998876543
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.3e-08 Score=79.73 Aligned_cols=51 Identities=24% Similarity=0.702 Sum_probs=41.9
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHH-HHhcCCC-CccccccccCCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEP-WLQLHGT-CPICRQTLHSES 147 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~-wl~~~~~-CP~CR~~l~~~~ 147 (176)
..+..|.||++..... ..++|||+||..||.. |-+.+.. ||+||+.+..+.
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 3477899999987665 7889999999999999 8666554 999999886553
No 26
>KOG0287|consensus
Probab=98.59 E-value=1.2e-08 Score=84.00 Aligned_cols=52 Identities=31% Similarity=0.786 Sum_probs=45.5
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
+.-+.|.||.+.|..+ .++||+|.||.-||..+|..+..||.|+.++.....
T Consensus 21 D~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 3456799999999887 889999999999999999999999999998765443
No 27
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.54 E-value=3.7e-08 Score=64.82 Aligned_cols=51 Identities=31% Similarity=0.524 Sum_probs=39.9
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-CCCCccccccccCCCc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSESA 148 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~~~~ 148 (176)
+...|+|+.+.+.++ +++++||.|.+.||..|++. ..+||+|+..+...+.
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l 54 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDL 54 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence 346799999999887 88999999999999999988 7899999998876544
No 28
>KOG1493|consensus
Probab=98.53 E-value=1.3e-08 Score=66.37 Aligned_cols=51 Identities=35% Similarity=0.817 Sum_probs=37.3
Q ss_pred CCccCccccccccC---------CCceEEec-CCCcCCHHhHHHHHhc---CCCCccccccccC
Q psy5318 95 SNLQCSVCWEQFTL---------DEAVRKLP-CDHFYHTPCIEPWLQL---HGTCPICRQTLHS 145 (176)
Q Consensus 95 ~~~~C~IC~~~~~~---------~~~~~~lp-C~H~Fh~~Ci~~wl~~---~~~CP~CR~~l~~ 145 (176)
.+.+|.||.-.|.. ++...++. |.|.||..||.+|+.. +..||+||+...-
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 34479999887742 23334444 9999999999999954 3469999998653
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.53 E-value=5.1e-08 Score=57.56 Aligned_cols=34 Identities=29% Similarity=0.779 Sum_probs=21.4
Q ss_pred CccccccccCCC-ceEEecCCCcCCHHhHHHHHhcC
Q psy5318 99 CSVCWEQFTLDE-AVRKLPCDHFYHTPCIEPWLQLH 133 (176)
Q Consensus 99 C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~ 133 (176)
|+||.+ |...+ ..++|+|||+|+.+|+.++++..
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence 899999 75533 56889999999999999998743
No 30
>KOG2164|consensus
Probab=98.53 E-value=4.4e-08 Score=84.44 Aligned_cols=49 Identities=31% Similarity=0.837 Sum_probs=40.0
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC-----CCCccccccccCCC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH-----GTCPICRQTLHSES 147 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-----~~CP~CR~~l~~~~ 147 (176)
+..|+||++..... ..+.|||+||..||..++... ..||+||..+..++
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd 239 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD 239 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence 67799999987655 666799999999999987543 37999999887743
No 31
>KOG2930|consensus
Probab=98.52 E-value=3.7e-08 Score=67.83 Aligned_cols=30 Identities=30% Similarity=0.844 Sum_probs=27.5
Q ss_pred CCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 117 CDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 117 C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
|+|.||..||.+||+.+..||+|.++....
T Consensus 81 CNHaFH~hCisrWlktr~vCPLdn~eW~~q 110 (114)
T KOG2930|consen 81 CNHAFHFHCISRWLKTRNVCPLDNKEWVFQ 110 (114)
T ss_pred cchHHHHHHHHHHHhhcCcCCCcCcceeEe
Confidence 999999999999999999999999876543
No 32
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.49 E-value=9.6e-08 Score=58.04 Aligned_cols=42 Identities=29% Similarity=0.808 Sum_probs=32.7
Q ss_pred cCccccccccCCCceEEecCC-----CcCCHHhHHHHHhcC--CCCcccc
Q psy5318 98 QCSVCWEQFTLDEAVRKLPCD-----HFYHTPCIEPWLQLH--GTCPICR 140 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~~--~~CP~CR 140 (176)
.|.||++ ...++...+.||. |.+|..|+.+|+..+ .+||+|+
T Consensus 1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3899998 3444555678975 899999999999554 4899995
No 33
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.48 E-value=5.5e-08 Score=78.62 Aligned_cols=48 Identities=29% Similarity=0.695 Sum_probs=42.9
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
+..+.|-||-+.+..+ ..++|||.||.-||..+|..+.-||+||.+..
T Consensus 23 Ds~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 23 DSMLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hhHHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 4456799999999877 78899999999999999999999999998754
No 34
>KOG0828|consensus
Probab=98.44 E-value=6.4e-08 Score=83.04 Aligned_cols=51 Identities=27% Similarity=0.796 Sum_probs=39.7
Q ss_pred CCccCccccccccCCC--------------ceEEecCCCcCCHHhHHHHHh-cCCCCccccccccC
Q psy5318 95 SNLQCSVCWEQFTLDE--------------AVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHS 145 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~--------------~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~ 145 (176)
....|+||+..+.... ....+||.|+||..|+..|+. .+-.||+||.+++.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3456999999764211 234569999999999999998 55599999999864
No 35
>KOG0804|consensus
Probab=98.36 E-value=2.1e-07 Score=79.06 Aligned_cols=50 Identities=26% Similarity=0.804 Sum_probs=40.0
Q ss_pred cCCCccCccccccccCCC-ceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 93 IDSNLQCSVCWEQFTLDE-AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
..+.++|+||++.+.... .++...|.|.||..|+..| ...+||+||.-..
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence 356788999999987553 3344569999999999999 5568999998665
No 36
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=3.1e-07 Score=75.48 Aligned_cols=52 Identities=19% Similarity=0.507 Sum_probs=37.6
Q ss_pred CccCcccccc-ccCCC-ceEEecCCCcCCHHhHHHHHh-cCCCCccccccccCCC
Q psy5318 96 NLQCSVCWEQ-FTLDE-AVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHSES 147 (176)
Q Consensus 96 ~~~C~IC~~~-~~~~~-~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~~~ 147 (176)
+..||+|... +..++ ...+.+|||.||..|+...+. ....||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4569999985 33332 223337999999999999764 4458999999886654
No 37
>KOG2177|consensus
Probab=98.29 E-value=2.4e-07 Score=74.38 Aligned_cols=45 Identities=31% Similarity=0.790 Sum_probs=39.3
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccc
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICR 140 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 140 (176)
..+...|+||++.|..+ ..++|+|.||..|+..++.....||.||
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccC
Confidence 34567799999999977 8899999999999999988445899999
No 38
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.28 E-value=1.4e-07 Score=61.55 Aligned_cols=49 Identities=24% Similarity=0.680 Sum_probs=23.1
Q ss_pred ccCcccccccc-CCCc-eEEe---cCCCcCCHHhHHHHHhc---C--------CCCccccccccC
Q psy5318 97 LQCSVCWEQFT-LDEA-VRKL---PCDHFYHTPCIEPWLQL---H--------GTCPICRQTLHS 145 (176)
Q Consensus 97 ~~C~IC~~~~~-~~~~-~~~l---pC~H~Fh~~Ci~~wl~~---~--------~~CP~CR~~l~~ 145 (176)
..|.||+..+. .++. ..+. .|++.||..|+..||.. . +.||.|+.++.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 45999999875 3322 2222 39999999999999842 1 159999998753
No 39
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.23 E-value=2.9e-07 Score=84.29 Aligned_cols=52 Identities=21% Similarity=0.827 Sum_probs=38.2
Q ss_pred cCCCccCccccccccCCC---ceEEec-CCCcCCHHhHHHHHhcC--CCCcccccccc
Q psy5318 93 IDSNLQCSVCWEQFTLDE---AVRKLP-CDHFYHTPCIEPWLQLH--GTCPICRQTLH 144 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~---~~~~lp-C~H~Fh~~Ci~~wl~~~--~~CP~CR~~l~ 144 (176)
...-.+|+||+..+..-+ .-.+.+ |+|.||..|+.+|++.. ++||+||.+++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 445667999998765111 123344 99999999999999754 47999998764
No 40
>KOG0311|consensus
Probab=98.05 E-value=4.6e-07 Score=75.04 Aligned_cols=54 Identities=26% Similarity=0.557 Sum_probs=43.3
Q ss_pred ccCCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhc-CCCCccccccccCCCc
Q psy5318 92 QIDSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQL-HGTCPICRQTLHSESA 148 (176)
Q Consensus 92 ~~~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~~~~ 148 (176)
.+..+..|+||++.++.. +..+ |.|.||..||..-++. .++||.||+.+..+-.
T Consensus 39 ~~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs 94 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS 94 (381)
T ss_pred HhhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence 345667799999998765 5555 9999999999888854 5589999999876643
No 41
>KOG4265|consensus
Probab=98.04 E-value=2.9e-06 Score=70.48 Aligned_cols=49 Identities=29% Similarity=0.676 Sum_probs=41.1
Q ss_pred CCCccCccccccccCCCceEEecCCC-cCCHHhHHHHHhcCCCCccccccccC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDH-FYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H-~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
+...+|.||+.+-.+. .+|||.| -.|..|.+...-.++.||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 3467799999987665 8999999 68999999876678899999998854
No 42
>KOG0824|consensus
Probab=97.98 E-value=2.8e-06 Score=69.14 Aligned_cols=48 Identities=25% Similarity=0.538 Sum_probs=39.1
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-CCCCccccccccCC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~~ 146 (176)
..+|.||+....-+ +.++|+|.||.-||+--.+. ..+|++||.+++..
T Consensus 7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 45699999876555 78899999999999887654 44699999998765
No 43
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.98 E-value=1.3e-06 Score=55.37 Aligned_cols=48 Identities=25% Similarity=0.715 Sum_probs=23.9
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 147 (176)
...|++|.+.+..+ +....|.|+||..||..-+. ..||+|+.+.-.++
T Consensus 7 lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 7 LLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD 54 (65)
T ss_dssp TTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS
T ss_pred hcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHH
Confidence 45699999998755 33445999999999987543 35999998765444
No 44
>KOG4445|consensus
Probab=97.90 E-value=1e-05 Score=65.90 Aligned_cols=53 Identities=32% Similarity=0.782 Sum_probs=42.9
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-----------------------CCCCccccccccCCC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-----------------------HGTCPICRQTLHSES 147 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-----------------------~~~CP~CR~~l~~~~ 147 (176)
..-.|.||+-.|..++...+++|.|+||..|+.++|.. .-.||+||..+..+.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 34559999999999988899999999999999776421 115999999997654
No 45
>KOG0827|consensus
Probab=97.89 E-value=4.8e-06 Score=69.86 Aligned_cols=47 Identities=30% Similarity=0.873 Sum_probs=35.0
Q ss_pred ccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcC---CCCccccccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLH---GTCPICRQTL 143 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~---~~CP~CR~~l 143 (176)
..|.||-+.+.....+.-+. |||+||..|+..|+..- ..||.||-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 45999955554444555555 99999999999999653 4799999443
No 46
>KOG1039|consensus
Probab=97.81 E-value=7.6e-06 Score=68.59 Aligned_cols=53 Identities=28% Similarity=0.703 Sum_probs=38.4
Q ss_pred CCCccCccccccccCCC----ceEEec-CCCcCCHHhHHHHH--hc-----CCCCccccccccCC
Q psy5318 94 DSNLQCSVCWEQFTLDE----AVRKLP-CDHFYHTPCIEPWL--QL-----HGTCPICRQTLHSE 146 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~----~~~~lp-C~H~Fh~~Ci~~wl--~~-----~~~CP~CR~~l~~~ 146 (176)
..+.+|.||++...... ....+| |.|.||..||..|- +. ...||.||.....-
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 34678999999865432 122345 99999999999997 33 45799999865433
No 47
>KOG0978|consensus
Probab=97.80 E-value=4.7e-06 Score=75.08 Aligned_cols=50 Identities=22% Similarity=0.602 Sum_probs=40.1
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHh-cCCCCccccccccCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHSE 146 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~~ 146 (176)
.....|++|-..+++. +...|+|+||..|+.+.+. +...||.|...+..-
T Consensus 641 K~~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred HhceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 4567899999777654 5556999999999999985 566899999987543
No 48
>KOG0825|consensus
Probab=97.72 E-value=5.9e-06 Score=74.60 Aligned_cols=50 Identities=20% Similarity=0.490 Sum_probs=39.5
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..|++|+..+.+.......+|+|+||..|+..|-+...+||+||..+...
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 34777777666554445567999999999999999999999999987544
No 49
>KOG4172|consensus
Probab=97.72 E-value=5.5e-06 Score=50.71 Aligned_cols=45 Identities=31% Similarity=0.721 Sum_probs=34.6
Q ss_pred ccCccccccccCCCceEEecCCC-cCCHHhHHHHHh-cCCCCcccccccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDH-FYHTPCIEPWLQ-LHGTCPICRQTLH 144 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H-~Fh~~Ci~~wl~-~~~~CP~CR~~l~ 144 (176)
.+|.||++.-.+. +...||| -.|..|..+.++ .+..||+||+++.
T Consensus 8 dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 5699999875543 3345999 578899877666 6779999999874
No 50
>KOG1785|consensus
Probab=97.67 E-value=2.6e-05 Score=65.86 Aligned_cols=49 Identities=31% Similarity=0.769 Sum_probs=39.5
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhc--CCCCccccccccCCCc
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL--HGTCPICRQTLHSESA 148 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--~~~CP~CR~~l~~~~~ 148 (176)
..|.||-+.= ..+.+-||||..|..|+..|-.. ..+||.||.++...+.
T Consensus 370 eLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 4599998753 34577799999999999999733 4589999999987765
No 51
>KOG4159|consensus
Probab=97.64 E-value=2.9e-05 Score=66.38 Aligned_cols=50 Identities=30% Similarity=0.712 Sum_probs=43.6
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
...+..|.||+..+..+ +.+||||.||..||.+-+.....||.||..+..
T Consensus 81 ~~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCccccccccc
Confidence 35567899999988766 778999999999999988888899999999875
No 52
>KOG1645|consensus
Probab=97.62 E-value=4.7e-05 Score=64.41 Aligned_cols=48 Identities=29% Similarity=0.865 Sum_probs=36.2
Q ss_pred CccCccccccccCCC--ceEEecCCCcCCHHhHHHHHh--cCCCCccccccc
Q psy5318 96 NLQCSVCWEQFTLDE--AVRKLPCDHFYHTPCIEPWLQ--LHGTCPICRQTL 143 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~--~~~~lpC~H~Fh~~Ci~~wl~--~~~~CP~CR~~l 143 (176)
..+|+||++.+...- ..+.+.|+|.|...||++||- ....||.|..+-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 457999999886543 334455999999999999993 334799997643
No 53
>KOG0297|consensus
Probab=97.49 E-value=4.6e-05 Score=65.30 Aligned_cols=53 Identities=30% Similarity=0.691 Sum_probs=45.0
Q ss_pred cCCCccCccccccccCCCceEE-ecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
.++++.|++|...+.++ .. ..|+|.||..|+..|+..+..||.|+..+.....
T Consensus 18 ~~~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCC---CCCCCCCCcccccccchhhccCcCCcccccccchhhc
Confidence 46678899999999876 44 4799999999999999999999999988766554
No 54
>KOG1941|consensus
Probab=97.47 E-value=2.9e-05 Score=65.41 Aligned_cols=48 Identities=38% Similarity=0.985 Sum_probs=38.8
Q ss_pred CCCccCccccccccCC-CceEEecCCCcCCHHhHHHHHhcCC--CCccccc
Q psy5318 94 DSNLQCSVCWEQFTLD-EAVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQ 141 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~--~CP~CR~ 141 (176)
+-...|..|-+.+... +....+||.|+||..|+...|..+. +||.||+
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4467799999987544 4677789999999999999985543 8999994
No 55
>KOG3039|consensus
Probab=97.38 E-value=0.00019 Score=57.18 Aligned_cols=68 Identities=21% Similarity=0.354 Sum_probs=56.3
Q ss_pred CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCccccccccCCCcccCCCCCCCCCCCCC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGAGGPGGLN 163 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~~~~~~~~~~~~n 163 (176)
....|+||.+.+.+...+..| ||||+|+..|.++.+.....||+|-.++...+...+..-+.+ -+..|
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~LqrGGTG-fa~tn 288 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQRGGTG-FAETN 288 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEeeeccccc-ccccc
Confidence 457799999999998877777 599999999999999999999999999998888776554443 44444
No 56
>KOG2660|consensus
Probab=97.33 E-value=5.3e-05 Score=62.48 Aligned_cols=52 Identities=21% Similarity=0.574 Sum_probs=42.0
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
...-.+|.+|...|.+. ..+.-|-|.||..||.+.|.....||.|...+...
T Consensus 12 ~n~~itC~LC~GYliDA--TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDA--TTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred cccceehhhccceeecc--hhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 34567799999988765 12234999999999999999999999998877654
No 57
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.28 E-value=7.7e-05 Score=57.56 Aligned_cols=45 Identities=18% Similarity=0.482 Sum_probs=39.2
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
..|.||-++|..+ +++.|||.||..|...-++....|-+|.+...
T Consensus 197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 4699999999877 77889999999999998888889999977543
No 58
>KOG2879|consensus
Probab=97.24 E-value=0.00031 Score=56.76 Aligned_cols=53 Identities=28% Similarity=0.473 Sum_probs=39.5
Q ss_pred ccCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHh--cCCCCccccccccCC
Q psy5318 92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ--LHGTCPICRQTLHSE 146 (176)
Q Consensus 92 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~--~~~~CP~CR~~l~~~ 146 (176)
....+.+|++|.+.-..+ .+..+|+|+||..||..-+. ...+||.|..++.+-
T Consensus 235 ~~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l 289 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPL 289 (298)
T ss_pred cccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence 345677899998875544 34456999999999988654 346899998887643
No 59
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.24 E-value=0.00016 Score=45.26 Aligned_cols=41 Identities=24% Similarity=0.630 Sum_probs=27.3
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhc--CCCCcc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL--HGTCPI 138 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--~~~CP~ 138 (176)
...|+|.+..|+++ ++...|+|.|-+..|..|++. ...||+
T Consensus 11 ~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 46699999999854 444579999999999999944 336998
No 60
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.20 E-value=0.00018 Score=43.20 Aligned_cols=44 Identities=27% Similarity=0.628 Sum_probs=22.0
Q ss_pred CccccccccCCCceEEec--CCCcCCHHhHHHHHh-cCCCCccccccc
Q psy5318 99 CSVCWEQFTLDEAVRKLP--CDHFYHTPCIEPWLQ-LHGTCPICRQTL 143 (176)
Q Consensus 99 C~IC~~~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~-~~~~CP~CR~~l 143 (176)
|++|.+++...+. ...| |++.+|..|...-++ ....||-||++.
T Consensus 1 cp~C~e~~d~~d~-~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDK-DFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCT-T--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCC-ccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7899998844332 3344 999999999988775 577999999874
No 61
>KOG1813|consensus
Probab=97.17 E-value=0.00012 Score=59.60 Aligned_cols=47 Identities=23% Similarity=0.550 Sum_probs=41.0
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..|-||...|..+ ++..|+|.||..|...-++....|++|.+....-
T Consensus 242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred ccccccccccccc---hhhcCCceeehhhhccccccCCcceecccccccc
Confidence 3499999999888 8888999999999999888889999998876543
No 62
>KOG1428|consensus
Probab=97.08 E-value=0.00036 Score=67.12 Aligned_cols=52 Identities=25% Similarity=0.694 Sum_probs=41.4
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC----------CCccccccccC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG----------TCPICRQTLHS 145 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----------~CP~CR~~l~~ 145 (176)
+.++.|-||+.+--......+|.|+|+||..|...-|+.+- +||+|+.++..
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 46788999988766666778899999999999987664321 69999987753
No 63
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.04 E-value=0.0013 Score=53.38 Aligned_cols=97 Identities=20% Similarity=0.405 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhccCCCCCC-CC-HHHHhcCCccccccc------------ccCCCccCccccccccCCCce-EEecCCC
Q psy5318 55 GLDAIVTQLLNQMDGSGPPP-LS-TDKIKQIPVAHITKA------------QIDSNLQCSVCWEQFTLDEAV-RKLPCDH 119 (176)
Q Consensus 55 ~~~~~i~~ll~~~~~~~~~~-~~-~~~~~~l~~~~~~~~------------~~~~~~~C~IC~~~~~~~~~~-~~lpC~H 119 (176)
..+.+|+.|+........+. .. -..++.+-...+... .......|||....|...... ...+|||
T Consensus 58 nKeaile~Ll~~~~~~~~~~~~~hI~~LKDl~~l~~~~n~~~~~~~~~~~~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~ 137 (260)
T PF04641_consen 58 NKEAILEFLLDKKKNKDLPKTFSHIKSLKDLVELKFTKNPSYKEEDKSSGDNSEGRFICPVTGKEFNGKHKFVYLRPCGC 137 (260)
T ss_pred cHHHHHHHHHhcCcCCCCccccccccCccceeeEEeEecCccccccccccccCCceeECCCCCcccCCceeEEEEcCCCC
Confidence 35889999887654311111 11 112333333333332 134567899999999554444 4447999
Q ss_pred cCCHHhHHHHHhcCCCCccccccccCCCcccCC
Q psy5318 120 FYHTPCIEPWLQLHGTCPICRQTLHSESAESLG 152 (176)
Q Consensus 120 ~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~~ 152 (176)
+|...++... +....||+|-.++...+.+...
T Consensus 138 V~s~~alke~-k~~~~Cp~c~~~f~~~DiI~Ln 169 (260)
T PF04641_consen 138 VFSEKALKEL-KKSKKCPVCGKPFTEEDIIPLN 169 (260)
T ss_pred EeeHHHHHhh-cccccccccCCccccCCEEEec
Confidence 9999999986 3355799999999877665543
No 64
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.87 E-value=0.00062 Score=40.83 Aligned_cols=40 Identities=35% Similarity=0.908 Sum_probs=26.4
Q ss_pred CccccccccCCCceEEecC--CC---cCCHHhHHHHHhc--CCCCccc
Q psy5318 99 CSVCWEQFTLDEAVRKLPC--DH---FYHTPCIEPWLQL--HGTCPIC 139 (176)
Q Consensus 99 C~IC~~~~~~~~~~~~lpC--~H---~Fh~~Ci~~wl~~--~~~CP~C 139 (176)
|-||++.-...+ ..+.|| .- ..|..|+.+|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 678988766554 455675 44 7899999999963 4579887
No 65
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.85 E-value=0.00042 Score=48.19 Aligned_cols=34 Identities=32% Similarity=0.715 Sum_probs=28.0
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHH
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIE 127 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~ 127 (176)
.++...|++|...+.. ....+.||||+||..|+.
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 3556779999999876 466778999999999975
No 66
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.83 E-value=0.0021 Score=52.76 Aligned_cols=42 Identities=31% Similarity=0.701 Sum_probs=34.8
Q ss_pred ccCccccccccCCCceEEec-CCCcCCHHhHHHHH-hcCCCCccccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWL-QLHGTCPICRQ 141 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl-~~~~~CP~CR~ 141 (176)
+.|+.|...+.+. ..++ |+|.||..||..-| .....||.|..
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 5699999888766 5566 99999999998776 56678999976
No 67
>KOG4692|consensus
Probab=96.80 E-value=0.0013 Score=55.05 Aligned_cols=49 Identities=22% Similarity=0.457 Sum_probs=41.0
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
.++..|+||+-.-.. .+..||+|.-|..||.+.+-..+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi~---Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPIN---AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccch---hhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 356779999775433 3778999999999999999999999999988764
No 68
>KOG3970|consensus
Probab=96.79 E-value=0.0011 Score=52.36 Aligned_cols=51 Identities=25% Similarity=0.610 Sum_probs=40.0
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc--------CCCCccccccccCC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL--------HGTCPICRQTLHSE 146 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--------~~~CP~CR~~l~~~ 146 (176)
-...|..|-..+..++.++ |.|-|.||.+|+..|-.. ...||-|..++-+.
T Consensus 49 Y~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred CCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 3456999999998886655 779999999999999532 12699999987544
No 69
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.74 E-value=0.00073 Score=49.21 Aligned_cols=43 Identities=14% Similarity=0.546 Sum_probs=33.1
Q ss_pred CccCccccccccCCCceEEecCC------CcCCHHhHHHHHhcCCCCcc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCD------HFYHTPCIEPWLQLHGTCPI 138 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~------H~Fh~~Ci~~wl~~~~~CP~ 138 (176)
..+|.||++.+...+.++.++|+ |.||..|+.+|-+.+..=|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPf 74 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPF 74 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCc
Confidence 34599999999886678888887 89999999999544433343
No 70
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.74 E-value=0.0012 Score=49.31 Aligned_cols=49 Identities=20% Similarity=0.640 Sum_probs=35.6
Q ss_pred CCCccCccccccccCCCceEEecC--CC---cCCHHhHHHHHhcCC--CCccccccccCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPC--DH---FYHTPCIEPWLQLHG--TCPICRQTLHSE 146 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC--~H---~Fh~~Ci~~wl~~~~--~CP~CR~~l~~~ 146 (176)
..+..|-||.++-.. ..-|| .. ..|.+|+.+|+..++ +|+.|+.+..-.
T Consensus 6 ~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 456679999887432 23464 44 669999999996544 799999987654
No 71
>PHA02862 5L protein; Provisional
Probab=96.69 E-value=0.001 Score=48.96 Aligned_cols=46 Identities=17% Similarity=0.570 Sum_probs=34.3
Q ss_pred ccCccccccccCCCceEEecCC-----CcCCHHhHHHHHhcCC--CCccccccccCC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCD-----HFYHTPCIEPWLQLHG--TCPICRQTLHSE 146 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~~~--~CP~CR~~l~~~ 146 (176)
..|-||.++-... .-||. ...|..|+.+|++..+ .|++|+.+..-+
T Consensus 3 diCWIC~~~~~e~----~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 3 DICWICNDVCDER----NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CEEEEecCcCCCC----cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 4699999975432 35654 5889999999996544 799999987544
No 72
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.64 E-value=0.00091 Score=41.18 Aligned_cols=46 Identities=24% Similarity=0.530 Sum_probs=33.8
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 147 (176)
..|-.|...-..+ .++||+|..+..|..- ++-+.||.|..++...+
T Consensus 8 ~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 8 QPCVFCGFVGTKG---TVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred eeEEEcccccccc---ccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence 3466665544333 7889999999999754 46678999999987654
No 73
>KOG1952|consensus
Probab=96.59 E-value=0.0011 Score=60.90 Aligned_cols=48 Identities=27% Similarity=0.780 Sum_probs=37.4
Q ss_pred CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC-------CCccccc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG-------TCPICRQ 141 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~-------~CP~CR~ 141 (176)
...++|.||.+.+.....+.-.. |-|+||..||..|.+... .||.|+.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 34678999999998776555443 999999999999974321 5999983
No 74
>KOG4275|consensus
Probab=96.54 E-value=0.00087 Score=54.67 Aligned_cols=42 Identities=31% Similarity=0.659 Sum_probs=32.3
Q ss_pred CccCccccccccCCCceEEecCCC-cCCHHhHHHHHhcCCCCcccccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDH-FYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H-~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
+..|.||++.-. ..+.|+||| +-|.+|-+.. ..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc---ceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 556999998754 347899999 6688887653 38999998764
No 75
>KOG1002|consensus
Probab=96.40 E-value=0.00087 Score=58.72 Aligned_cols=51 Identities=22% Similarity=0.606 Sum_probs=39.4
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-----CCCCccccccccCCCc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-----HGTCPICRQTLHSESA 148 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-----~~~CP~CR~~l~~~~~ 148 (176)
+...|.+|.+.-++. ....|.|.||+-|+..+... +-+||.|...+.-+..
T Consensus 535 ~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDls 590 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLS 590 (791)
T ss_pred CceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Confidence 456699998876554 67789999999999888632 3489999988866533
No 76
>KOG4739|consensus
Probab=96.39 E-value=0.0017 Score=51.67 Aligned_cols=48 Identities=19% Similarity=0.661 Sum_probs=35.2
Q ss_pred cCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
.|..|..--. ++....+.|.|+||..|...- ....||+|++.+.....
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i~l 52 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRIIQL 52 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccC--Cccccccccceeeeeec
Confidence 3777766444 667788889999999998652 23389999998755433
No 77
>KOG1814|consensus
Probab=96.38 E-value=0.0013 Score=55.92 Aligned_cols=37 Identities=24% Similarity=0.773 Sum_probs=32.0
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHh
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ 131 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~ 131 (176)
....|.||++..........+||+|+||..|++..+.
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 4566999999987667888899999999999999874
No 78
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.34 E-value=0.0027 Score=53.06 Aligned_cols=49 Identities=27% Similarity=0.658 Sum_probs=38.7
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHH--HhcCCCCcccccccc
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPW--LQLHGTCPICRQTLH 144 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~w--l~~~~~CP~CR~~l~ 144 (176)
.++...|-||.+.+. ...++||+|..|.-|..+. |..+..||+||.+..
T Consensus 58 DEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 58 DEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred ccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 345667999988764 4478999999999998765 567889999998653
No 79
>PHA03096 p28-like protein; Provisional
Probab=96.24 E-value=0.0018 Score=53.17 Aligned_cols=45 Identities=24% Similarity=0.484 Sum_probs=30.8
Q ss_pred ccCccccccccCC----CceEEec-CCCcCCHHhHHHHHhcC---CCCccccc
Q psy5318 97 LQCSVCWEQFTLD----EAVRKLP-CDHFYHTPCIEPWLQLH---GTCPICRQ 141 (176)
Q Consensus 97 ~~C~IC~~~~~~~----~~~~~lp-C~H~Fh~~Ci~~wl~~~---~~CP~CR~ 141 (176)
..|.||++..... ..-..|+ |.|.||..|+..|...+ .+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 5699999976532 1234455 99999999999997432 24444443
No 80
>KOG1571|consensus
Probab=96.20 E-value=0.0032 Score=52.73 Aligned_cols=45 Identities=27% Similarity=0.582 Sum_probs=32.6
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
.....|.||++...+ ...+||||.-| |..-- +...+||+||+.+.
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 445679999998765 48899999866 54332 33446999999874
No 81
>KOG4185|consensus
Probab=96.19 E-value=0.0033 Score=51.65 Aligned_cols=47 Identities=30% Similarity=0.678 Sum_probs=37.9
Q ss_pred ccCccccccccCCC---ceEEecCCCcCCHHhHHHHHhcC-CCCccccccc
Q psy5318 97 LQCSVCWEQFTLDE---AVRKLPCDHFYHTPCIEPWLQLH-GTCPICRQTL 143 (176)
Q Consensus 97 ~~C~IC~~~~~~~~---~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~l 143 (176)
+.|-||-++|...+ ..+.|.|||.||..|+.+.+... ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 46999999998663 45667799999999998877543 4799999985
No 82
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=95.99 E-value=0.0068 Score=35.60 Aligned_cols=38 Identities=26% Similarity=0.765 Sum_probs=23.0
Q ss_pred CccccccccCCCceEEec---CCCcCCHHhHHHHHhcCC--CCccc
Q psy5318 99 CSVCWEQFTLDEAVRKLP---CDHFYHTPCIEPWLQLHG--TCPIC 139 (176)
Q Consensus 99 C~IC~~~~~~~~~~~~lp---C~H~Fh~~Ci~~wl~~~~--~CP~C 139 (176)
|.+|.+....+ ..-+ |+-.+|..|+..+++... .||.|
T Consensus 1 C~~C~~iv~~G---~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQG---QRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSS---EE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeee---ccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 66787777766 4443 888999999999997665 79987
No 83
>KOG0801|consensus
Probab=95.97 E-value=0.0024 Score=47.93 Aligned_cols=29 Identities=28% Similarity=0.799 Sum_probs=26.1
Q ss_pred CCccCccccccccCCCceEEecCCCcCCH
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHT 123 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~ 123 (176)
..-+|.||+|++..++.+.+|||-.+||+
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEeec
Confidence 34579999999999999999999999996
No 84
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.92 E-value=0.0046 Score=51.60 Aligned_cols=54 Identities=26% Similarity=0.589 Sum_probs=39.4
Q ss_pred CCCccCccccccccCCCce-EEecCCCcCCHHhHHHHH-hcCCCCccccccccCCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAV-RKLPCDHFYHTPCIEPWL-QLHGTCPICRQTLHSES 147 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~-~~lpC~H~Fh~~Ci~~wl-~~~~~CP~CR~~l~~~~ 147 (176)
++++.|+.|++.+...++- .-.|||-..|.-|...-- ..++.||-||+....++
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 3445599999998776643 345799888888875532 34668999999887664
No 85
>KOG3268|consensus
Probab=95.91 E-value=0.0043 Score=47.28 Aligned_cols=51 Identities=20% Similarity=0.626 Sum_probs=35.6
Q ss_pred ccCccccccccCCC----ceEEecCCCcCCHHhHHHHHhc----CC-------CCccccccccCCC
Q psy5318 97 LQCSVCWEQFTLDE----AVRKLPCDHFYHTPCIEPWLQL----HG-------TCPICRQTLHSES 147 (176)
Q Consensus 97 ~~C~IC~~~~~~~~----~~~~lpC~H~Fh~~Ci~~wl~~----~~-------~CP~CR~~l~~~~ 147 (176)
..|.||+..-..+. ..-...||.-||.-|+..||+. +. .||+|..++..+.
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 44888876544442 2223459999999999999842 21 5999999886553
No 86
>KOG0826|consensus
Probab=95.72 E-value=0.0083 Score=49.75 Aligned_cols=47 Identities=21% Similarity=0.446 Sum_probs=38.3
Q ss_pred CCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
....|++|+....++ .++. -|-+||..|+...+..++.||+=..+..
T Consensus 299 ~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS 346 (357)
T ss_pred ccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence 456699999988776 3443 6999999999999999999998766554
No 87
>KOG0827|consensus
Probab=95.49 E-value=0.0014 Score=55.36 Aligned_cols=51 Identities=25% Similarity=0.652 Sum_probs=43.1
Q ss_pred ccCccccccccCC-CceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318 97 LQCSVCWEQFTLD-EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 97 ~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 147 (176)
..|+||.+.++.. +.+..+.|||.+|..|+.+||.....||.|+.+++...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 3499999988765 56667789999999999999988889999999987543
No 88
>KOG1940|consensus
Probab=95.41 E-value=0.0075 Score=49.23 Aligned_cols=45 Identities=33% Similarity=0.761 Sum_probs=37.1
Q ss_pred ccCccccccccCCC-ceEEecCCCcCCHHhHHHHHhcCCCCccccc
Q psy5318 97 LQCSVCWEQFTLDE-AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141 (176)
Q Consensus 97 ~~C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 141 (176)
..|+||.+.+.... .+..++|+|..|..|.......+-+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34999998765543 4566789999999999998877789999988
No 89
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.12 E-value=0.027 Score=34.63 Aligned_cols=43 Identities=30% Similarity=0.696 Sum_probs=33.4
Q ss_pred CccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCCCCcc--cccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPI--CRQT 142 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~--CR~~ 142 (176)
...|.+|-+.|.+++.+++.| |+-.+|+.|..+ ...|-+ |...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 345999999998888888888 999999999754 555655 5443
No 90
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=95.01 E-value=0.058 Score=45.73 Aligned_cols=30 Identities=23% Similarity=0.773 Sum_probs=22.4
Q ss_pred CCCcCCHHhHHHHHhcCC-------------CCccccccccCC
Q psy5318 117 CDHFYHTPCIEPWLQLHG-------------TCPICRQTLHSE 146 (176)
Q Consensus 117 C~H~Fh~~Ci~~wl~~~~-------------~CP~CR~~l~~~ 146 (176)
|.-.+|..|+-+|+..++ .||.||++++--
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 556778899999974322 699999987643
No 91
>KOG2114|consensus
Probab=94.99 E-value=0.011 Score=54.52 Aligned_cols=41 Identities=32% Similarity=0.765 Sum_probs=32.1
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQT 142 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~ 142 (176)
..|..|--.+..+ .+...|+|.||.+|+. .....||.|+.+
T Consensus 841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchh
Confidence 5699998887654 3445699999999998 355689999873
No 92
>KOG2932|consensus
Probab=94.88 E-value=0.011 Score=48.74 Aligned_cols=45 Identities=22% Similarity=0.591 Sum_probs=31.1
Q ss_pred cCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
.|.-|-..+. -.-+.+||+|+||.+|... ...+.||.|-.++..-
T Consensus 92 fCd~Cd~PI~--IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 92 FCDRCDFPIA--IYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQRI 136 (389)
T ss_pred eecccCCcce--eeecccccchhhhhhhhhc--CccccCcCcccHHHHH
Confidence 4666644332 2336789999999999864 3456899998776443
No 93
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.85 E-value=0.03 Score=41.95 Aligned_cols=53 Identities=23% Similarity=0.621 Sum_probs=34.7
Q ss_pred CccCccccccccCCCceEEec------------CCC-cCCHHhHHHHHhc------------------------------
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLP------------CDH-FYHTPCIEPWLQL------------------------------ 132 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lp------------C~H-~Fh~~Ci~~wl~~------------------------------ 132 (176)
+..|+|||+---+. +.|- |+. .-|..|+.++-+.
T Consensus 2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (162)
T PF07800_consen 2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQ 78 (162)
T ss_pred CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccc
Confidence 56799999964433 3332 444 3467899887421
Q ss_pred -CCCCccccccccCCCcccC
Q psy5318 133 -HGTCPICRQTLHSESAESL 151 (176)
Q Consensus 133 -~~~CP~CR~~l~~~~~~~~ 151 (176)
+-.||+||..|..+..+..
T Consensus 79 ~~L~CPLCRG~V~GWtvve~ 98 (162)
T PF07800_consen 79 PELACPLCRGEVKGWTVVEP 98 (162)
T ss_pred ccccCccccCceeceEEchH
Confidence 1149999999988876543
No 94
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=94.59 E-value=0.01 Score=35.37 Aligned_cols=44 Identities=30% Similarity=0.804 Sum_probs=26.0
Q ss_pred cCccccccccCCCceEEecC-CCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 98 QCSVCWEQFTLDEAVRKLPC-DHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC-~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
.|.-||-..+ ....| .|+.|..|+...+.....||+|..+++.+
T Consensus 4 nCKsCWf~~k-----~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 4 NCKSCWFANK-----GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp ---SS-S--S-----SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred cChhhhhcCC-----CeeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 4777776543 23456 59999999999999999999999998754
No 95
>KOG3002|consensus
Probab=94.52 E-value=0.022 Score=47.25 Aligned_cols=45 Identities=24% Similarity=0.694 Sum_probs=34.9
Q ss_pred CCCccCccccccccCCCceEEecC--CCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPC--DHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC--~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
.+-.+||||.+.+..+ ...| ||.-|..|-.+ ....||.||.++..
T Consensus 46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRTK---VSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCccc----ceecCCCcEehhhhhhh---hcccCCcccccccc
Confidence 3456699999998866 3445 79999999753 56789999999873
No 96
>KOG1001|consensus
Probab=94.50 E-value=0.011 Score=54.04 Aligned_cols=51 Identities=24% Similarity=0.578 Sum_probs=40.7
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC--CCccccccccCCCcccC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQTLHSESAESL 151 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~CP~CR~~l~~~~~~~~ 151 (176)
..|.||++ .+.....+|+|.||..|+..-+.... .||.||..+..+...+.
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~ 507 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSA 507 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhc
Confidence 67999999 35567888999999999998875433 69999998877766554
No 97
>KOG3053|consensus
Probab=93.72 E-value=0.024 Score=45.56 Aligned_cols=51 Identities=20% Similarity=0.636 Sum_probs=35.0
Q ss_pred CCCccCccccccccCCCce-EEecC-----CCcCCHHhHHHHHhcCC--------CCcccccccc
Q psy5318 94 DSNLQCSVCWEQFTLDEAV-RKLPC-----DHFYHTPCIEPWLQLHG--------TCPICRQTLH 144 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~-~~lpC-----~H~Fh~~Ci~~wl~~~~--------~CP~CR~~l~ 144 (176)
+.+..|-||+..=++.... .+-|| .|..|..|+..|+.++. +||-|+.+..
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 4456699998765443221 33465 38999999999984332 5999998753
No 98
>KOG2034|consensus
Probab=93.62 E-value=0.033 Score=51.67 Aligned_cols=38 Identities=18% Similarity=0.599 Sum_probs=30.0
Q ss_pred ccCCCccCccccccccCCCceEEecCCCcCCHHhHHHHH
Q psy5318 92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWL 130 (176)
Q Consensus 92 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl 130 (176)
..+....|.+|...+... .-.+.||||.||+.|+.+..
T Consensus 813 v~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 813 VLEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred EecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 456677899998877643 55678999999999997763
No 99
>KOG0298|consensus
Probab=93.34 E-value=0.022 Score=54.72 Aligned_cols=44 Identities=27% Similarity=0.669 Sum_probs=37.0
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 141 (176)
...|.||++.+... ..+..|+|.+|..|...|+..+..||.|+.
T Consensus 1153 ~~~c~ic~dil~~~--~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQ--GGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred ccchHHHHHHHHhc--CCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 44799999988722 155679999999999999999999999973
No 100
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.33 E-value=0.054 Score=39.41 Aligned_cols=50 Identities=28% Similarity=0.649 Sum_probs=37.0
Q ss_pred CCccCccccccccCCCceEEe-c---CCCcCCHHhHHHHHh---cCCCCccccccccCCC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-P---CDHFYHTPCIEPWLQ---LHGTCPICRQTLHSES 147 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-p---C~H~Fh~~Ci~~wl~---~~~~CP~CR~~l~~~~ 147 (176)
.-.+|.||.|...+. +-| | ||-..|.-|....++ .+..||+|+.++...+
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 456799999976544 333 3 999999998877665 4558999999886554
No 101
>KOG2817|consensus
Probab=92.13 E-value=0.13 Score=43.86 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=42.1
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC---CCccccccccCC
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSE 146 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~CP~CR~~l~~~ 146 (176)
......|||=.+.-.+......|.|||+...+-+.+..+... .||+|-.+....
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~ 387 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLAS 387 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHH
Confidence 345677999888777777889999999999999999765433 699996654433
No 102
>KOG1812|consensus
Probab=91.66 E-value=0.1 Score=44.77 Aligned_cols=39 Identities=18% Similarity=0.643 Sum_probs=27.9
Q ss_pred CCccCcccc-ccccCCCceEEecCCCcCCHHhHHHHHhcC
Q psy5318 95 SNLQCSVCW-EQFTLDEAVRKLPCDHFYHTPCIEPWLQLH 133 (176)
Q Consensus 95 ~~~~C~IC~-~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~ 133 (176)
...+|.||. +.....+...+..|+|.||..|+++.++.+
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 356799999 444433333456699999999999988643
No 103
>KOG4367|consensus
Probab=91.16 E-value=0.12 Score=44.74 Aligned_cols=34 Identities=29% Similarity=0.633 Sum_probs=29.3
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHH
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWL 130 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl 130 (176)
+++..|+||-.-|..+ ++|||+|..|.-|...-+
T Consensus 2 eeelkc~vc~~f~~ep---iil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREP---IILPCSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehhhccCc---eEeecccHHHHHHHHhhc
Confidence 4567799999999877 899999999999987654
No 104
>KOG3800|consensus
Probab=91.07 E-value=0.19 Score=41.17 Aligned_cols=47 Identities=21% Similarity=0.521 Sum_probs=33.5
Q ss_pred cCcccccc-ccCCCce-EEecCCCcCCHHhHHHHHhcC-CCCcccccccc
Q psy5318 98 QCSVCWEQ-FTLDEAV-RKLPCDHFYHTPCIEPWLQLH-GTCPICRQTLH 144 (176)
Q Consensus 98 ~C~IC~~~-~~~~~~~-~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~l~ 144 (176)
.|++|..+ |.+++-. .+-+|+|..|..|+...+... ..||.|-..+-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 49999664 4444422 233699999999999987554 47999977654
No 105
>KOG0309|consensus
Probab=90.98 E-value=0.13 Score=47.34 Aligned_cols=25 Identities=32% Similarity=0.792 Sum_probs=22.0
Q ss_pred EecCCCcCCHHhHHHHHhcCCCCcc
Q psy5318 114 KLPCDHFYHTPCIEPWLQLHGTCPI 138 (176)
Q Consensus 114 ~lpC~H~Fh~~Ci~~wl~~~~~CP~ 138 (176)
...|+|+.|..|.+.|+.....||-
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhcCCcCCC
Confidence 3459999999999999999999984
No 106
>KOG3161|consensus
Probab=90.54 E-value=0.068 Score=48.23 Aligned_cols=43 Identities=23% Similarity=0.662 Sum_probs=31.3
Q ss_pred CccCccccccccCCC-ceEEecCCCcCCHHhHHHHHhcCCCCccccc
Q psy5318 96 NLQCSVCWEQFTLDE-AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 141 (176)
-..|+||+..|.... ..+-+.|||..|.+|+... .+.+|| |+.
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence 356999988876553 3344569999999999875 566888 543
No 107
>KOG1100|consensus
Probab=90.26 E-value=0.13 Score=40.43 Aligned_cols=40 Identities=40% Similarity=0.793 Sum_probs=28.7
Q ss_pred CccccccccCCCceEEecCCC-cCCHHhHHHHHhcCCCCccccccccC
Q psy5318 99 CSVCWEQFTLDEAVRKLPCDH-FYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 99 C~IC~~~~~~~~~~~~lpC~H-~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
|-.|.+. ...+..+||.| .+|..|-.. ...||+|+.....
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhhc
Confidence 7777554 34678889999 677788643 4469999876543
No 108
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=90.22 E-value=0.12 Score=41.39 Aligned_cols=49 Identities=22% Similarity=0.568 Sum_probs=34.9
Q ss_pred CCccCcccccc-ccCCCc-eEEec-CCCcCCHHhHHHHHhcCC-CCc--cccccc
Q psy5318 95 SNLQCSVCWEQ-FTLDEA-VRKLP-CDHFYHTPCIEPWLQLHG-TCP--ICRQTL 143 (176)
Q Consensus 95 ~~~~C~IC~~~-~~~~~~-~~~lp-C~H~Fh~~Ci~~wl~~~~-~CP--~CR~~l 143 (176)
.+..||||..+ |-+++. ..+-| |-|.+|.+|+.+-+.... .|| -|.+-|
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 34569999765 444443 33346 999999999999887655 799 776543
No 109
>KOG4718|consensus
Probab=89.14 E-value=0.19 Score=39.45 Aligned_cols=46 Identities=26% Similarity=0.624 Sum_probs=36.7
Q ss_pred CccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
-..|.+|.+-...+ +.. .|+-.||..|+...+.+...||.|..-++
T Consensus 181 lk~Cn~Ch~LvIqg---~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG---IRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWT 227 (235)
T ss_pred HHHHhHhHHHhhee---eccCcccchhhhHHHHHHhcccCcCCchhcccC
Confidence 45699999887655 444 38889999999999999999999965443
No 110
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=89.00 E-value=0.17 Score=30.55 Aligned_cols=43 Identities=28% Similarity=0.754 Sum_probs=20.1
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC---C--CCcccccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH---G--TCPICRQT 142 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~---~--~CP~CR~~ 142 (176)
+.|+|....+..+ ++-..|.|.-|.+ +..||... . .||+|.++
T Consensus 3 L~CPls~~~i~~P--~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4589988887644 4445599986644 44555322 2 69999864
No 111
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=87.90 E-value=0.29 Score=45.46 Aligned_cols=53 Identities=23% Similarity=0.701 Sum_probs=38.0
Q ss_pred CCccCccccccccCCCceEEecCC-----CcCCHHhHHHHHhcCC--CCccccccccCCCc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCD-----HFYHTPCIEPWLQLHG--TCPICRQTLHSESA 148 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~~~--~CP~CR~~l~~~~~ 148 (176)
++..|.||..+=..++.. --||+ ...|.+|+.+|+.-.. .|-+|+.++.-++.
T Consensus 11 d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred cchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeee
Confidence 446799998875544333 23555 4789999999996443 69999998876643
No 112
>KOG1609|consensus
Probab=87.64 E-value=0.31 Score=40.02 Aligned_cols=51 Identities=25% Similarity=0.654 Sum_probs=36.1
Q ss_pred CccCccccccccCCCc-eEEecCC-----CcCCHHhHHHHHh--cCCCCccccccccCC
Q psy5318 96 NLQCSVCWEQFTLDEA-VRKLPCD-----HFYHTPCIEPWLQ--LHGTCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~-~~~lpC~-----H~Fh~~Ci~~wl~--~~~~CP~CR~~l~~~ 146 (176)
...|-||..+...... ....||. +..|..|+..|+. .+..|.+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4679999987653321 3556754 5779999999996 445799998865444
No 113
>KOG3113|consensus
Probab=87.08 E-value=1.7 Score=35.19 Aligned_cols=51 Identities=10% Similarity=0.264 Sum_probs=36.1
Q ss_pred CccCccccccccCCCce-EEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 96 NLQCSVCWEQFTLDEAV-RKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~-~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
...|+|---++...... ...+|||+|-..-+.+. ...+|++|.+.+..++-
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDV 162 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCe
Confidence 34588876666544333 34469999998877763 46689999998877665
No 114
>KOG0802|consensus
Probab=86.50 E-value=0.45 Score=42.65 Aligned_cols=53 Identities=26% Similarity=0.817 Sum_probs=41.3
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCcccCCCC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPA 154 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~~~~ 154 (176)
....|.||+... ..+..+|. |..|+..|+..+..||+|+..+..+........
T Consensus 478 ~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~~~~~ 530 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFLSKNSS 530 (543)
T ss_pred ccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccccCcccc
Confidence 356699998887 33666788 899999999999999999998877665554433
No 115
>KOG3899|consensus
Probab=86.43 E-value=0.3 Score=40.18 Aligned_cols=31 Identities=19% Similarity=0.644 Sum_probs=22.9
Q ss_pred CCCcCCHHhHHHHHhc-------------CCCCccccccccCCC
Q psy5318 117 CDHFYHTPCIEPWLQL-------------HGTCPICRQTLHSES 147 (176)
Q Consensus 117 C~H~Fh~~Ci~~wl~~-------------~~~CP~CR~~l~~~~ 147 (176)
|...+|.+|+-+|+.. +-+||.||+.++-.+
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 5667888999998732 226999999886543
No 116
>KOG1829|consensus
Probab=86.27 E-value=0.2 Score=45.03 Aligned_cols=43 Identities=23% Similarity=0.726 Sum_probs=27.4
Q ss_pred CccCcccccc-----ccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCcccccc
Q psy5318 96 NLQCSVCWEQ-----FTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQT 142 (176)
Q Consensus 96 ~~~C~IC~~~-----~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~ 142 (176)
...|.+|... |. .+.++.. .|+++||..|... .+..||.|-+-
T Consensus 511 gfiCe~Cq~~~iiyPF~-~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~R~ 559 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFE-TRNTRRCSTCLAVFHKKCLRR---KSPCCPRCERR 559 (580)
T ss_pred eeeeeeccCCCcccccc-cccceeHHHHHHHHHHHHHhc---cCCCCCchHHH
Confidence 4457777432 32 2334444 4999999999764 44459999553
No 117
>KOG4362|consensus
Probab=85.35 E-value=0.19 Score=45.80 Aligned_cols=48 Identities=23% Similarity=0.706 Sum_probs=37.2
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC---CCccccccccCC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~CP~CR~~l~~~ 146 (176)
..+|+||...+..+ ..+.|.|.|+..|+..-+...+ .||+|+..+...
T Consensus 21 ~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 45699999988876 6678999999999977664433 699999655443
No 118
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=85.32 E-value=2.1 Score=26.48 Aligned_cols=47 Identities=23% Similarity=0.519 Sum_probs=33.5
Q ss_pred ccCccccccccCCC-ceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 97 LQCSVCWEQFTLDE-AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 97 ~~C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
..|-.|-.++..+. ...+..=...||..|....| +..||.|...+..
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 45888888887665 33443323479999999865 6799999888754
No 119
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=83.79 E-value=0.15 Score=30.40 Aligned_cols=43 Identities=30% Similarity=0.670 Sum_probs=27.7
Q ss_pred cCccccccccCCCceEEe-cCCCcCCHHhHHHHHh------cCCCCccccc
Q psy5318 98 QCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQ------LHGTCPICRQ 141 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~------~~~~CP~CR~ 141 (176)
.|.||...- .....+.- .|+..||..|+..-.. ..-.||.|+.
T Consensus 1 ~C~vC~~~~-~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSD-DDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSC-TTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcC-CCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 388898833 33344444 4999999999965432 1236888864
No 120
>KOG2068|consensus
Probab=83.36 E-value=1.4 Score=36.79 Aligned_cols=55 Identities=24% Similarity=0.569 Sum_probs=38.5
Q ss_pred CccCccccccccCCC-ceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCccc
Q psy5318 96 NLQCSVCWEQFTLDE-AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAES 150 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~ 150 (176)
...|+||.+.....+ ...-.||++..|..|+..-...+.+||.||++....+...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t~~s 304 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNTKKS 304 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccCcccc
Confidence 366999999774333 2233458888888888877778889999997665544433
No 121
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=81.06 E-value=0.85 Score=23.69 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=11.8
Q ss_pred cCccccccccCCCceEEec-CCCcC
Q psy5318 98 QCSVCWEQFTLDEAVRKLP-CDHFY 121 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lp-C~H~F 121 (176)
.|+-|...+. .....-| |||.|
T Consensus 2 ~CP~C~~~V~--~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVP--ESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCch--hhcCcCCCCCCCC
Confidence 3666766553 2233445 66665
No 122
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=80.61 E-value=1.1 Score=27.21 Aligned_cols=42 Identities=21% Similarity=0.498 Sum_probs=20.4
Q ss_pred CccccccccCC------CceEEec-CCCcCCHHhHHHHHhcCCCCcccc
Q psy5318 99 CSVCWEQFTLD------EAVRKLP-CDHFYHTPCIEPWLQLHGTCPICR 140 (176)
Q Consensus 99 C~IC~~~~~~~------~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR 140 (176)
|--|+..|... ....+-| |++.||.+|=.--=+.=..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 44566666543 1334455 999999999653223334799883
No 123
>KOG1812|consensus
Probab=80.57 E-value=0.87 Score=39.14 Aligned_cols=44 Identities=27% Similarity=0.537 Sum_probs=31.8
Q ss_pred CccCccccccccCCCce--EEecCCCcCCHHhHHHHHhcCCCCccc
Q psy5318 96 NLQCSVCWEQFTLDEAV--RKLPCDHFYHTPCIEPWLQLHGTCPIC 139 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~--~~lpC~H~Fh~~Ci~~wl~~~~~CP~C 139 (176)
-..|+.|.-.+...... ....|+|.||..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 45699997776544433 333599999999999998777767554
No 124
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=80.49 E-value=1.6 Score=23.72 Aligned_cols=37 Identities=24% Similarity=0.561 Sum_probs=24.3
Q ss_pred CccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 99 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 99 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
|..|.+.+...+.. ...=+..||..|. .|..|+..|.
T Consensus 2 C~~C~~~i~~~~~~-~~~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 2 CAGCGKPIRGGELV-LRALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred ccccCCcccCCcEE-EEeCCccccccCC--------CCcccCCcCc
Confidence 77888877654222 2234678888876 5888877663
No 125
>KOG0825|consensus
Probab=78.93 E-value=1.2 Score=41.57 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=38.4
Q ss_pred CCccCccccccccCCC-ceEEec---CCCcCCHHhHHHHHhc------CCCCccccccccCCCc
Q psy5318 95 SNLQCSVCWEQFTLDE-AVRKLP---CDHFYHTPCIEPWLQL------HGTCPICRQTLHSESA 148 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~-~~~~lp---C~H~Fh~~Ci~~wl~~------~~~CP~CR~~l~~~~~ 148 (176)
+...|.+|+.++..+. ..-.+| |+|.||..||..|... +-.|++|..-|..+.-
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR 158 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR 158 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh
Confidence 3466888888887632 233444 9999999999999632 2258999887766654
No 126
>KOG0269|consensus
Probab=78.20 E-value=2.1 Score=39.57 Aligned_cols=44 Identities=23% Similarity=0.482 Sum_probs=29.9
Q ss_pred cCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcc--cccc
Q psy5318 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPI--CRQT 142 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~--CR~~ 142 (176)
.|.+|-..+. +..+..-.|+|.-|..|+..|+..+..||. |...
T Consensus 781 ~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~ 826 (839)
T KOG0269|consen 781 KCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHL 826 (839)
T ss_pred Cceeecceee-eeEeecccccccccHHHHHHHHhcCCCCccccCCcc
Confidence 4777755432 111222239999999999999998888877 6443
No 127
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=77.60 E-value=1.7 Score=33.92 Aligned_cols=40 Identities=25% Similarity=0.924 Sum_probs=27.6
Q ss_pred CccCcccccc-----ccCCCceEEec-CCCcCCHHhHHHHHhcCCCCccccc
Q psy5318 96 NLQCSVCWEQ-----FTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQ 141 (176)
Q Consensus 96 ~~~C~IC~~~-----~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~ 141 (176)
...|-+|.+. |+. +.+...+ |+.+||..|.. +..||.|.+
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 4568888652 332 2455555 99999999975 267999954
No 128
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=77.37 E-value=0.19 Score=32.62 Aligned_cols=40 Identities=23% Similarity=0.582 Sum_probs=21.3
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
..|+.|..++.... +|.+|..|-.. ++....||-|..+|.
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHHH
Confidence 45999988865432 56666667654 345557999988874
No 129
>KOG1815|consensus
Probab=76.81 E-value=1.3 Score=38.64 Aligned_cols=37 Identities=27% Similarity=0.695 Sum_probs=29.2
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL 132 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~ 132 (176)
.....|.||.+.+.. ....+.|+|.||..|+...+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 345669999998865 4466789999999999988754
No 130
>KOG3579|consensus
Probab=76.12 E-value=1.4 Score=36.22 Aligned_cols=39 Identities=23% Similarity=0.525 Sum_probs=29.2
Q ss_pred CCccCccccccccCCCceEEec--CCCcCCHHhHHHHHhcCC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLP--CDHFYHTPCIEPWLQLHG 134 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~~~~ 134 (176)
..+.|.+|.|.+++. ..+..| =.|.||..|-..-++.+.
T Consensus 267 apLcCTLC~ERLEDT-HFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 267 APLCCTLCHERLEDT-HFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CceeehhhhhhhccC-ceeecCCCcccceecccCHHHHHhhc
Confidence 357799999999876 223333 469999999999887654
No 131
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3005|consensus
Probab=73.11 E-value=1.7 Score=35.33 Aligned_cols=48 Identities=27% Similarity=0.751 Sum_probs=33.1
Q ss_pred ccCccccccccCCC-ceEEec---CCCcCCHHhHHHHH-hc--------CCCCcccccccc
Q psy5318 97 LQCSVCWEQFTLDE-AVRKLP---CDHFYHTPCIEPWL-QL--------HGTCPICRQTLH 144 (176)
Q Consensus 97 ~~C~IC~~~~~~~~-~~~~lp---C~H~Fh~~Ci~~wl-~~--------~~~CP~CR~~l~ 144 (176)
..|.+|.+++...+ .....+ |+-.+|..|+..-+ .. ...||.|++-+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 47999999994333 333333 89999999998843 22 225999998553
No 133
>KOG2807|consensus
Probab=72.46 E-value=3.2 Score=34.84 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=33.0
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 141 (176)
...|-.|..+.......+--.|++.||.+|-.---+.=..||.|..
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 3459999777766555554559999999997654344457999963
No 134
>KOG2066|consensus
Probab=70.98 E-value=1.8 Score=40.26 Aligned_cols=44 Identities=27% Similarity=0.564 Sum_probs=30.8
Q ss_pred CccCccccccccCC----CceEEecCCCcCCHHhHHHHHhcCCCCcccc
Q psy5318 96 NLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICR 140 (176)
Q Consensus 96 ~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 140 (176)
+..|.-|.+..... +.+.++.|+|+||..|+..-..++. |-.|.
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 44699998865422 4677888999999999976654433 55553
No 135
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.94 E-value=6.9 Score=27.74 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=32.4
Q ss_pred ccCccccccccCC----------CceEEec-CCCcCCHHhHHHHHhcCCCCcccc
Q psy5318 97 LQCSVCWEQFTLD----------EAVRKLP-CDHFYHTPCIEPWLQLHGTCPICR 140 (176)
Q Consensus 97 ~~C~IC~~~~~~~----------~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR 140 (176)
..|--|+..|... .....-+ |++.||.+|=.-+-+.=..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 4599999987643 1123344 999999999888766667899995
No 136
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=69.93 E-value=2.8 Score=26.78 Aligned_cols=12 Identities=17% Similarity=0.753 Sum_probs=8.5
Q ss_pred cCCHHhHHHHHh
Q psy5318 120 FYHTPCIEPWLQ 131 (176)
Q Consensus 120 ~Fh~~Ci~~wl~ 131 (176)
-||+.|+.+|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999974
No 137
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=68.62 E-value=1.8 Score=27.36 Aligned_cols=35 Identities=17% Similarity=0.468 Sum_probs=17.6
Q ss_pred CccCccccccccCCCceEEec-CCCcCCHHhHHHHH
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWL 130 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl 130 (176)
...|.+|...|..-..-..-. ||++||..|.....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 456999999996544333343 99999999986543
No 138
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=67.84 E-value=2.8 Score=23.45 Aligned_cols=13 Identities=23% Similarity=0.782 Sum_probs=8.9
Q ss_pred cCccccccccCCC
Q psy5318 98 QCSVCWEQFTLDE 110 (176)
Q Consensus 98 ~C~IC~~~~~~~~ 110 (176)
.|+-|...|..++
T Consensus 4 ~CP~C~~~f~v~~ 16 (37)
T PF13719_consen 4 TCPNCQTRFRVPD 16 (37)
T ss_pred ECCCCCceEEcCH
Confidence 4888877776543
No 139
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=67.70 E-value=4.6 Score=33.81 Aligned_cols=50 Identities=24% Similarity=0.345 Sum_probs=36.1
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC---CCCcccccc
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH---GTCPICRQT 142 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~---~~CP~CR~~ 142 (176)
+..-..||+=-+.-......+.+.|||+.-..-+...-+.. ..||+|-..
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 45567799877766666677889999999888877754322 259999543
No 140
>KOG3039|consensus
Probab=67.31 E-value=4.7 Score=32.60 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=28.1
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHH
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWL 130 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl 130 (176)
+-..|+.|+..+.++ ++.|=||+|++.||.+.+
T Consensus 42 ~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~i 74 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDP---VITPDGYLFDREAILEYI 74 (303)
T ss_pred CcceeeeecccccCC---ccCCCCeeeeHHHHHHHH
Confidence 345599999999887 888999999999997764
No 141
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=66.06 E-value=3.2 Score=24.95 Aligned_cols=40 Identities=23% Similarity=0.560 Sum_probs=25.8
Q ss_pred CccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318 99 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 99 C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 147 (176)
|..|.+.+...+. .+..-+..||..|. +|-.|+..|....
T Consensus 1 C~~C~~~I~~~~~-~~~~~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEI-VIKAMGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSE-EEEETTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcEE-EEEeCCcEEEcccc--------ccCCCCCccCCCe
Confidence 5667777664432 22346778888775 6888888776553
No 142
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=63.09 E-value=6.3 Score=23.71 Aligned_cols=34 Identities=21% Similarity=0.507 Sum_probs=23.5
Q ss_pred ccCccccccccCCCceEEe-cCCCcCCHHhHHHHH
Q psy5318 97 LQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWL 130 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl 130 (176)
..|.+|...|.....-... .||++||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 3599998887654322333 499999999986553
No 143
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=61.28 E-value=3 Score=25.26 Aligned_cols=37 Identities=24% Similarity=0.646 Sum_probs=19.5
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHh--cCCCCcccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ--LHGTCPICRQT 142 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~--~~~~CP~CR~~ 142 (176)
...||.|.+.+... .| +. .|...... ....||+|...
T Consensus 2 ~f~CP~C~~~~~~~----~L-~~-----H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSES----SL-VE-----HCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHH----HH-HH-----HHHhHCcCCCCCccCCCchhh
Confidence 35699998855432 11 22 23333322 23469999763
No 144
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=58.25 E-value=3.8 Score=24.77 Aligned_cols=12 Identities=42% Similarity=1.157 Sum_probs=6.4
Q ss_pred CCccccccccCC
Q psy5318 135 TCPICRQTLHSE 146 (176)
Q Consensus 135 ~CP~CR~~l~~~ 146 (176)
.||+|.+++..+
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 899999988654
No 146
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=56.75 E-value=10 Score=26.86 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=15.6
Q ss_pred HHHhcCCCCccccccccCCCc
Q psy5318 128 PWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 128 ~wl~~~~~CP~CR~~l~~~~~ 148 (176)
+.+.+...|+.|++++..+..
T Consensus 80 KmLGr~D~CM~C~~pLTLd~~ 100 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLTLDPS 100 (114)
T ss_pred hhhchhhccCcCCCcCccCch
Confidence 345666789999999976643
No 147
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=56.22 E-value=3.7 Score=35.30 Aligned_cols=30 Identities=37% Similarity=0.610 Sum_probs=0.0
Q ss_pred ceEEecCCCcCCHHhHHHHHh------cCCCCccccccc
Q psy5318 111 AVRKLPCDHFYHTPCIEPWLQ------LHGTCPICRQTL 143 (176)
Q Consensus 111 ~~~~lpC~H~Fh~~Ci~~wl~------~~~~CP~CR~~l 143 (176)
..+-+.|||++..+ .|-. ...+||+||..=
T Consensus 303 P~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 303 PWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp ---------------------------------------
T ss_pred ceeeccccceeeec---ccccccccccccccCCCccccC
Confidence 44557799987743 5642 244799999743
No 148
>PLN02248 cellulose synthase-like protein
Probab=55.57 E-value=15 Score=35.85 Aligned_cols=35 Identities=23% Similarity=0.513 Sum_probs=29.0
Q ss_pred Eec--CCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 114 KLP--CDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 114 ~lp--C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
.+| |+...|++|...-++....||-|+.+....+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1135)
T PLN02248 145 LLPCECGFKICRDCYIDAVKSGGICPGCKEPYKVTDL 181 (1135)
T ss_pred CCcccccchhHHhHhhhhhhcCCCCCCCccccccccc
Confidence 455 88899999999999888899999998855443
No 149
>PLN02189 cellulose synthase
Probab=54.44 E-value=13 Score=35.96 Aligned_cols=48 Identities=21% Similarity=0.488 Sum_probs=33.8
Q ss_pred ccCccccccccC---CCceEEec-CCCcCCHHhHHHHH-hcCCCCcccccccc
Q psy5318 97 LQCSVCWEQFTL---DEAVRKLP-CDHFYHTPCIEPWL-QLHGTCPICRQTLH 144 (176)
Q Consensus 97 ~~C~IC~~~~~~---~~~~~~lp-C~H~Fh~~Ci~~wl-~~~~~CP~CR~~l~ 144 (176)
..|.||-+++.. ++.-+... |+--.|+.|.+-=. +.++.||.|+....
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 469999998753 33334444 88889999995433 33558999999876
No 150
>KOG3799|consensus
Probab=53.33 E-value=2.8 Score=30.74 Aligned_cols=51 Identities=18% Similarity=0.466 Sum_probs=27.4
Q ss_pred cCCCccCcccccc-ccCCCceEEecCCCcCCHHhHHHH-HhcCC---CCccccccc
Q psy5318 93 IDSNLQCSVCWEQ-FTLDEAVRKLPCDHFYHTPCIEPW-LQLHG---TCPICRQTL 143 (176)
Q Consensus 93 ~~~~~~C~IC~~~-~~~~~~~~~lpC~H~Fh~~Ci~~w-l~~~~---~CP~CR~~l 143 (176)
...+.+|.||+.. |.++-.....-|.-.||..|--+- ++.+. .|-+|+...
T Consensus 62 v~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred cCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 3567889999874 444411111124445555555433 23233 588888754
No 151
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=51.17 E-value=10 Score=26.14 Aligned_cols=32 Identities=22% Similarity=0.566 Sum_probs=20.9
Q ss_pred CccCccccccccCCCceEEe--cCCCcCCHHhHHHH
Q psy5318 96 NLQCSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPW 129 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~~w 129 (176)
...|.||.... +-.+.-. .|...||..|....
T Consensus 55 ~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 55 KLKCSICGKSG--GACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred CCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHHC
Confidence 45699998872 2111111 28889999998653
No 152
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=51.07 E-value=19 Score=23.82 Aligned_cols=49 Identities=24% Similarity=0.493 Sum_probs=19.1
Q ss_pred CccCccccccccCCC--ceEEe--cCCCcCCHHhHHHHHh-cCCCCcccccccc
Q psy5318 96 NLQCSVCWEQFTLDE--AVRKL--PCDHFYHTPCIEPWLQ-LHGTCPICRQTLH 144 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~--~~~~l--pC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~ 144 (176)
...|.||-+.+.... .+.+. -|+--.|+.|..-=.+ .++.||-|+.+..
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 456999999875432 22222 3888889999865443 4558999997664
No 153
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=49.98 E-value=12 Score=19.69 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=9.6
Q ss_pred cCccccccccCCCceEEecCCCcCCHHhH
Q psy5318 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCI 126 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci 126 (176)
.|.+|.+.........-..|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 48888887665222233348888998885
No 154
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.37 E-value=25 Score=22.93 Aligned_cols=48 Identities=27% Similarity=0.575 Sum_probs=31.4
Q ss_pred ccCccccccccCCCc-eEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 97 LQCSVCWEQFTLDEA-VRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..|--|-.++..+.. ..+..=.|.||..|...- .+..||.|..++...
T Consensus 6 PnCECCDrDLpp~s~dA~ICtfEcTFCadCae~~--l~g~CPnCGGelv~R 54 (84)
T COG3813 6 PNCECCDRDLPPDSTDARICTFECTFCADCAENR--LHGLCPNCGGELVAR 54 (84)
T ss_pred CCCcccCCCCCCCCCceeEEEEeeehhHhHHHHh--hcCcCCCCCchhhcC
Confidence 346667666654432 222233578999999863 577999998887544
No 155
>KOG2231|consensus
Probab=48.72 E-value=16 Score=33.71 Aligned_cols=52 Identities=19% Similarity=0.476 Sum_probs=35.8
Q ss_pred cCccccccccCCCceEEecCCC-cCCHHhHHHHH--hc----CCCCccccccccCCCcccCC
Q psy5318 98 QCSVCWEQFTLDEAVRKLPCDH-FYHTPCIEPWL--QL----HGTCPICRQTLHSESAESLG 152 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC~H-~Fh~~Ci~~wl--~~----~~~CP~CR~~l~~~~~~~~~ 152 (176)
.|.||-...... ..-.|+| ..|..|..+.. .. ...||+||..+....-....
T Consensus 2 ~c~ic~~s~~~~---~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~~~~~ 60 (669)
T KOG2231|consen 2 SCAICAFSPDFV---GRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSNGDSS 60 (669)
T ss_pred CcceeecCcccc---ccccccccccchhhhhhhhhhcccccccccCcccccceeeecccccc
Confidence 399997765322 3345999 99999998874 22 33689999988766544433
No 156
>PLN02436 cellulose synthase A
Probab=48.70 E-value=18 Score=35.15 Aligned_cols=49 Identities=20% Similarity=0.468 Sum_probs=34.0
Q ss_pred CccCcccccccc---CCCceEEec-CCCcCCHHhHHHHH-hcCCCCcccccccc
Q psy5318 96 NLQCSVCWEQFT---LDEAVRKLP-CDHFYHTPCIEPWL-QLHGTCPICRQTLH 144 (176)
Q Consensus 96 ~~~C~IC~~~~~---~~~~~~~lp-C~H~Fh~~Ci~~wl-~~~~~CP~CR~~l~ 144 (176)
...|.||-+++. +++.-+... |+--.|+.|.+-=. +.++.||.|+....
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 346999999864 334334444 88789999995433 23558999999876
No 157
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=48.57 E-value=10 Score=25.09 Aligned_cols=33 Identities=24% Similarity=0.570 Sum_probs=21.1
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHH
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEP 128 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~ 128 (176)
...|.+|.......-....-.|...||..|...
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 345999987633221222224999999999865
No 158
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=47.75 E-value=1.5 Score=35.96 Aligned_cols=42 Identities=24% Similarity=0.417 Sum_probs=17.4
Q ss_pred CccCcccccccc-----CCC--ceEEecCCCcCCHHhHHHHHhcCCCCcccccc
Q psy5318 96 NLQCSVCWEQFT-----LDE--AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQT 142 (176)
Q Consensus 96 ~~~C~IC~~~~~-----~~~--~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~ 142 (176)
...||||-..-. .++ .. .|.+|.-|-..|--....||.|-..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~-----R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGK-----RYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------E-----EEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCcc-----EEEEcCCCCCeeeecCCCCcCCCCC
Confidence 357999977422 111 12 3456666888886667789999653
No 159
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=47.56 E-value=14 Score=29.75 Aligned_cols=25 Identities=32% Similarity=0.704 Sum_probs=19.4
Q ss_pred ccCccccccccCCCceEEecCCCcC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFY 121 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~F 121 (176)
..||+|...+...+.....+.+|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 4699999999766665666778888
No 160
>KOG0956|consensus
Probab=46.63 E-value=9.2 Score=35.36 Aligned_cols=48 Identities=21% Similarity=0.474 Sum_probs=30.5
Q ss_pred ccCccccccccCCC----ceEEe---cCCCcCCHHhHHHH--H-h-------cCCCCcccccccc
Q psy5318 97 LQCSVCWEQFTLDE----AVRKL---PCDHFYHTPCIEPW--L-Q-------LHGTCPICRQTLH 144 (176)
Q Consensus 97 ~~C~IC~~~~~~~~----~~~~l---pC~H~Fh~~Ci~~w--l-~-------~~~~CP~CR~~l~ 144 (176)
.+|-||.|.=...+ -+... .|+..||..|.... | + ..+-|-+|+..+.
T Consensus 118 KtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hfs 182 (900)
T KOG0956|consen 118 KTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFS 182 (900)
T ss_pred ceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHH
Confidence 45999988733221 11222 38899999999764 2 1 1235999988663
No 161
>KOG2113|consensus
Probab=44.40 E-value=60 Score=27.39 Aligned_cols=44 Identities=9% Similarity=-0.072 Sum_probs=32.2
Q ss_pred CCccCccccccccCCCceEEecCCC-cCCHHhHHHHHhcCCCCccccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDH-FYHTPCIEPWLQLHGTCPICRQTL 143 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H-~Fh~~Ci~~wl~~~~~CP~CR~~l 143 (176)
....|-.|-+..... ...+|+| .||..|.. +....+||+|....
T Consensus 342 s~~~~~~~~~~~~st---~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLST---IWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hhcccccccCceeee---EeecCCcccChhhhhh--cccCCccccccccc
Confidence 345688887766544 5668999 78888887 56677999997654
No 162
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=44.39 E-value=11 Score=20.95 Aligned_cols=13 Identities=23% Similarity=0.902 Sum_probs=8.5
Q ss_pred cCccccccccCCC
Q psy5318 98 QCSVCWEQFTLDE 110 (176)
Q Consensus 98 ~C~IC~~~~~~~~ 110 (176)
+|+-|...|..++
T Consensus 4 ~Cp~C~~~y~i~d 16 (36)
T PF13717_consen 4 TCPNCQAKYEIDD 16 (36)
T ss_pred ECCCCCCEEeCCH
Confidence 4777877775443
No 163
>KOG0824|consensus
Probab=44.21 E-value=7.1 Score=32.43 Aligned_cols=48 Identities=23% Similarity=0.578 Sum_probs=36.2
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
....|-||...+..++ ..-.|.|.|+..|-..|......||.|+....
T Consensus 104 ~~~~~~~~~g~l~vpt--~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPT--RIQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred CccceeeeeeeEEecc--cccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 3456889988776442 22239999999999999988888998887543
No 164
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.70 E-value=11 Score=28.26 Aligned_cols=47 Identities=15% Similarity=0.453 Sum_probs=30.6
Q ss_pred ccccccccCCCceEEec-CCCcCCHHhHHHHHhcCCCCccccccccCCCcc
Q psy5318 100 SVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTLHSESAE 149 (176)
Q Consensus 100 ~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~ 149 (176)
.||+..=...+.+-.-| =.+.||.+|-.+-+. .||.|..++..+-..
T Consensus 8 qiC~NGH~~t~~~~~~p~~~~~fC~kCG~~tI~---~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 8 QICLNGHVITDSYDKNPELREKFCSKCGAKTIT---SCPNCSTPIRGDYHV 55 (158)
T ss_pred HHccCccccccccccCchHHHHHHHHhhHHHHH---HCcCCCCCCCCceec
Confidence 36666544333333333 456899999988654 599999988776543
No 165
>KOG1356|consensus
Probab=42.18 E-value=11 Score=35.54 Aligned_cols=56 Identities=16% Similarity=0.325 Sum_probs=35.5
Q ss_pred ccccccccCCCccCccccccccCCCceEEec-CCCcCCHHhHHHHH-hc-----CCCCccccccc
Q psy5318 86 AHITKAQIDSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWL-QL-----HGTCPICRQTL 143 (176)
Q Consensus 86 ~~~~~~~~~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl-~~-----~~~CP~CR~~l 143 (176)
.............|..|....- ....+.+ |++.||..|+..|. +. ...|+.|+..-
T Consensus 219 ~a~k~a~~g~~~mC~~C~~tlf--n~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C 281 (889)
T KOG1356|consen 219 VAWKRAVKGIREMCDRCETTLF--NIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKC 281 (889)
T ss_pred cchhhcccCcchhhhhhccccc--ceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhc
Confidence 3333333445667999977643 2234445 99999999999994 11 12577776654
No 166
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=41.66 E-value=18 Score=24.65 Aligned_cols=37 Identities=19% Similarity=0.555 Sum_probs=27.1
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
..|.||-..+.. =+|.||..|.. .+..|.+|-+.+..
T Consensus 45 ~~C~~CK~~v~q--------~g~~YCq~CAY----kkGiCamCGKki~d 81 (90)
T PF10235_consen 45 SKCKICKTKVHQ--------PGAKYCQTCAY----KKGICAMCGKKILD 81 (90)
T ss_pred cccccccccccc--------CCCccChhhhc----ccCcccccCCeecc
Confidence 359999665432 36789999964 47799999998843
No 167
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=40.30 E-value=17 Score=30.42 Aligned_cols=42 Identities=21% Similarity=0.466 Sum_probs=26.5
Q ss_pred CCccCcccccccc-------CCCceEEecCCCcCCHHhHHHHHhcCCCCccccc
Q psy5318 95 SNLQCSVCWEQFT-------LDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141 (176)
Q Consensus 95 ~~~~C~IC~~~~~-------~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 141 (176)
....|++|-..-. ..+..+ +.+|.-|-..|--.+..||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~R-----yL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLR-----YLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCce-----EEEcCCCCCcccccCccCCCCCC
Confidence 3567999977521 112233 34455577788667778999975
No 168
>KOG0956|consensus
Probab=40.13 E-value=22 Score=32.97 Aligned_cols=30 Identities=13% Similarity=0.453 Sum_probs=20.4
Q ss_pred eEEecCCCcCCHHhHHHHHhcCCCCccccc
Q psy5318 112 VRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141 (176)
Q Consensus 112 ~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 141 (176)
++..|-|-+||++|-.+--.....|-+|-.
T Consensus 41 IvqVPtGpWfCrKCesqeraarvrCeLCP~ 70 (900)
T KOG0956|consen 41 IVQVPTGPWFCRKCESQERAARVRCELCPH 70 (900)
T ss_pred eEecCCCchhhhhhhhhhhhccceeecccC
Confidence 455678899999998764444456777743
No 169
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=40.11 E-value=9.8 Score=28.33 Aligned_cols=28 Identities=32% Similarity=0.682 Sum_probs=20.0
Q ss_pred CCHHhHHHHHhcCC----CCccccccccCCCc
Q psy5318 121 YHTPCIEPWLQLHG----TCPICRQTLHSESA 148 (176)
Q Consensus 121 Fh~~Ci~~wl~~~~----~CP~CR~~l~~~~~ 148 (176)
||..|+.+=|..-. .||.|+..-..+..
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~~ 33 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEVEKSGQSA 33 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcCCCCCCcc
Confidence 78889988775544 69999876554443
No 170
>KOG1729|consensus
Probab=39.99 E-value=5.4 Score=32.98 Aligned_cols=37 Identities=19% Similarity=0.530 Sum_probs=23.3
Q ss_pred cCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC
Q psy5318 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG 134 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~ 134 (176)
.|.+|++++..+.......|.-+||..|+..|++...
T Consensus 216 vC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T KOG1729|consen 216 VCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTGA 252 (288)
T ss_pred ecHHHHHHHhcccccchhhcccccccccccccccccc
Confidence 6777777776543444444555777777777765433
No 171
>KOG4185|consensus
Probab=39.98 E-value=4.1 Score=33.30 Aligned_cols=46 Identities=26% Similarity=0.501 Sum_probs=35.2
Q ss_pred ccCccccccccCC-C--ceEEec--------CCCcCCHHhHHHHHhcC-CCCcccccc
Q psy5318 97 LQCSVCWEQFTLD-E--AVRKLP--------CDHFYHTPCIEPWLQLH-GTCPICRQT 142 (176)
Q Consensus 97 ~~C~IC~~~~~~~-~--~~~~lp--------C~H~Fh~~Ci~~wl~~~-~~CP~CR~~ 142 (176)
..|.||...+... . ..+++. |+|..|..|+..-+... ..||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 5699999888732 2 335566 99999999999987544 489999875
No 172
>PF06750 DiS_P_DiS: Bacterial Peptidase A24 N-terminal domain; InterPro: IPR010627 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This domain is found at the N terminus of bacterial aspartic peptidases belonging to MEROPS peptidase family A24 (clan AD), subfamily A24A (type IV prepilin peptidase, IPR000045 from INTERPRO). It's function has not been specifically determined; however some of the family have been characterised as bifunctional [], and this domain may contain the N-methylation activity. The domain consists of an intracellular region between a pair of transmembrane domains. This intracellular region contains an invariant proline and four conserved cysteines. These Cys residues are arranged in a two-pair motif, with the Cys residues of a pair separated (usually) by 2 aa and with each pair separated by 21 largely hydrophilic residues (C-X-X-C...X21...C-X-X-C); they have been shown to be essential to the overall function of the enzyme [, ]. The bifunctional enzyme prepilin peptidase (PilD) from Pseudomonas aeruginosa is a key determinant in both type-IV pilus biogenesis and extracellular protein secretion, in its roles as a leader peptidase and methyl transferase (MTase). It is responsible for endopeptidic cleavage of the unique leader peptides that characterise type-IV pilin precursors, as well as proteins with homologous leader sequences that are essential components of the general secretion pathway found in a variety of Gram-negative pathogens. Following removal of the leader peptides, the same enzyme is responsible for the second posttranslational modification that characterises the type-IV pilins and their homologues, namely N-methylation of the newly exposed N-terminal amino acid residue [].
Probab=39.61 E-value=29 Score=23.52 Aligned_cols=38 Identities=21% Similarity=0.525 Sum_probs=27.6
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
...|+-|...+..-+.+- +..|+..++.|..|+++++.
T Consensus 33 rS~C~~C~~~L~~~~lIP------------i~S~l~lrGrCr~C~~~I~~ 70 (92)
T PF06750_consen 33 RSHCPHCGHPLSWWDLIP------------ILSYLLLRGRCRYCGAPIPP 70 (92)
T ss_pred CCcCcCCCCcCcccccch------------HHHHHHhCCCCcccCCCCCh
Confidence 345888887766543222 56788999999999998864
No 173
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=39.13 E-value=32 Score=33.53 Aligned_cols=49 Identities=20% Similarity=0.455 Sum_probs=33.2
Q ss_pred CccCccccccccCC---CceEEec-CCCcCCHHhHHHHH-hcCCCCcccccccc
Q psy5318 96 NLQCSVCWEQFTLD---EAVRKLP-CDHFYHTPCIEPWL-QLHGTCPICRQTLH 144 (176)
Q Consensus 96 ~~~C~IC~~~~~~~---~~~~~lp-C~H~Fh~~Ci~~wl-~~~~~CP~CR~~l~ 144 (176)
...|.||-+++... +.-+... |+-=.|+.|.+-=. +.++.||-|+....
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34699999987543 3333333 77779999994322 33558999998776
No 174
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=37.90 E-value=17 Score=21.88 Aligned_cols=22 Identities=23% Similarity=0.688 Sum_probs=12.2
Q ss_pred CCCcCCHHhHHHHHhcCCCCccc
Q psy5318 117 CDHFYHTPCIEPWLQLHGTCPIC 139 (176)
Q Consensus 117 C~H~Fh~~Ci~~wl~~~~~CP~C 139 (176)
|+|.|-.. +.........||.|
T Consensus 34 Cgh~w~~~-v~~R~~~~~~CP~C 55 (55)
T PF14311_consen 34 CGHEWKAS-VNDRTRRGKGCPYC 55 (55)
T ss_pred CCCeeEcc-HhhhccCCCCCCCC
Confidence 66666543 22222455679988
No 175
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=37.80 E-value=34 Score=33.29 Aligned_cols=50 Identities=20% Similarity=0.450 Sum_probs=34.2
Q ss_pred CCccCccccccccCC---CceEEec-CCCcCCHHhHHHHH-hcCCCCcccccccc
Q psy5318 95 SNLQCSVCWEQFTLD---EAVRKLP-CDHFYHTPCIEPWL-QLHGTCPICRQTLH 144 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~---~~~~~lp-C~H~Fh~~Ci~~wl-~~~~~CP~CR~~l~ 144 (176)
....|.||-+++... +.-+... |+--.|+.|.+-=. +.++.||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 345699999987533 3333333 77779999995433 23558999998876
No 176
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=37.72 E-value=19 Score=25.10 Aligned_cols=24 Identities=21% Similarity=0.473 Sum_probs=18.1
Q ss_pred CCcCCHHhHHHHHhc---------CCCCccccc
Q psy5318 118 DHFYHTPCIEPWLQL---------HGTCPICRQ 141 (176)
Q Consensus 118 ~H~Fh~~Ci~~wl~~---------~~~CP~CR~ 141 (176)
.-.||..|+..++.. +-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 678999999887632 126999987
No 177
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=37.38 E-value=25 Score=18.91 Aligned_cols=9 Identities=33% Similarity=1.014 Sum_probs=6.1
Q ss_pred CCCCccccc
Q psy5318 133 HGTCPICRQ 141 (176)
Q Consensus 133 ~~~CP~CR~ 141 (176)
...||+|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 337888865
No 178
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.77 E-value=15 Score=25.10 Aligned_cols=12 Identities=17% Similarity=0.744 Sum_probs=10.3
Q ss_pred cCCHHhHHHHHh
Q psy5318 120 FYHTPCIEPWLQ 131 (176)
Q Consensus 120 ~Fh~~Ci~~wl~ 131 (176)
-||+.|+..|..
T Consensus 42 gFCRNCLs~Wy~ 53 (104)
T COG3492 42 GFCRNCLSNWYR 53 (104)
T ss_pred HHHHHHHHHHHH
Confidence 389999999985
No 179
>PLN02195 cellulose synthase A
Probab=36.19 E-value=53 Score=31.78 Aligned_cols=49 Identities=22% Similarity=0.406 Sum_probs=33.7
Q ss_pred CccCccccccccCC---CceEEec-CCCcCCHHhHHHHH-hcCCCCcccccccc
Q psy5318 96 NLQCSVCWEQFTLD---EAVRKLP-CDHFYHTPCIEPWL-QLHGTCPICRQTLH 144 (176)
Q Consensus 96 ~~~C~IC~~~~~~~---~~~~~lp-C~H~Fh~~Ci~~wl-~~~~~CP~CR~~l~ 144 (176)
...|.||-+.+..+ +.-+... |+--.|+.|.+-=- +.++.||.|+....
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 34699999976533 3333333 88889999994322 23457999999887
No 180
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=36.01 E-value=10 Score=23.05 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=14.6
Q ss_pred ceEEe-cCCCcCCHHhHHHH
Q psy5318 111 AVRKL-PCDHFYHTPCIEPW 129 (176)
Q Consensus 111 ~~~~l-pC~H~Fh~~Ci~~w 129 (176)
..+.. .|++.||..|...|
T Consensus 39 ~~v~C~~C~~~fC~~C~~~~ 58 (64)
T smart00647 39 NRVTCPKCGFSFCFRCKVPW 58 (64)
T ss_pred CeeECCCCCCeECCCCCCcC
Confidence 34555 48999999998877
No 181
>KOG1815|consensus
Probab=35.93 E-value=10 Score=33.09 Aligned_cols=37 Identities=16% Similarity=0.406 Sum_probs=26.0
Q ss_pred CccCccccccccCCCce-----EEecCCCcCCHHhHHHHHhc
Q psy5318 96 NLQCSVCWEQFTLDEAV-----RKLPCDHFYHTPCIEPWLQL 132 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~-----~~lpC~H~Fh~~Ci~~wl~~ 132 (176)
...||.|....+..... ...+|+|.||..|+..|-..
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 34499998887765422 22249999999998888544
No 182
>PF14353 CpXC: CpXC protein
Probab=35.55 E-value=50 Score=23.39 Aligned_cols=47 Identities=21% Similarity=0.349 Sum_probs=23.2
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhc---CCCCccccccccCC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL---HGTCPICRQTLHSE 146 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~---~~~CP~CR~~l~~~ 146 (176)
.+|+-|...+... +...-.-.....=...-+.. ..+||.|.......
T Consensus 2 itCP~C~~~~~~~---v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~ 51 (128)
T PF14353_consen 2 ITCPHCGHEFEFE---VWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE 51 (128)
T ss_pred cCCCCCCCeeEEE---EEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence 3588887776533 11112222223333333322 22799998876544
No 183
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.37 E-value=43 Score=23.04 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=27.1
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHH
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWL 130 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl 130 (176)
-.|.||-..+..++...-.+ .-..|..|+..-.
T Consensus 7 wkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~ 39 (103)
T COG4847 7 WKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESK 39 (103)
T ss_pred eeEeeeCCEeeeccEEEEee-CCcchHHHHHHHH
Confidence 35999999999998877777 6678999997643
No 184
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=35.30 E-value=21 Score=22.31 Aligned_cols=15 Identities=27% Similarity=0.919 Sum_probs=11.4
Q ss_pred cCCCCccccccccCC
Q psy5318 132 LHGTCPICRQTLHSE 146 (176)
Q Consensus 132 ~~~~CP~CR~~l~~~ 146 (176)
.|+.||+|..+++.+
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
Confidence 466799998888754
No 185
>KOG1245|consensus
Probab=34.99 E-value=12 Score=37.60 Aligned_cols=49 Identities=27% Similarity=0.495 Sum_probs=36.5
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC----CCccccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG----TCPICRQTL 143 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~----~CP~CR~~l 143 (176)
....|.+|.........+.-.-|.-.||..|+.+-+.... .||-||..-
T Consensus 1107 ~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1107 VNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred chhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 3556999998876643333334889999999999876544 699999876
No 186
>KOG3842|consensus
Probab=34.81 E-value=46 Score=28.10 Aligned_cols=51 Identities=25% Similarity=0.608 Sum_probs=32.8
Q ss_pred CccCcccccccc---------------CCC-ceEEecCCCcCCHHhHHHHHhc---------CCCCccccccccCC
Q psy5318 96 NLQCSVCWEQFT---------------LDE-AVRKLPCDHFYHTPCIEPWLQL---------HGTCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~---------------~~~-~~~~lpC~H~Fh~~Ci~~wl~~---------~~~CP~CR~~l~~~ 146 (176)
..+|++|+..-. .+- .....||||+--.+-..-|-+. +..||.|-..|..+
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 567999987411 111 1233579998777777778532 23699998777544
No 187
>KOG0289|consensus
Probab=34.19 E-value=33 Score=30.13 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=43.6
Q ss_pred cCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCCCCccccccccCCCcccCCCCCC
Q psy5318 98 QCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPAGA 156 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~~~~~~ 156 (176)
.|+|--+.-+.+ ++-| -||+|-+.-|++.+...+.||+-.+++..++.+..++.+.
T Consensus 2 ~CaISgEvP~~P---VvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~~~~ 58 (506)
T KOG0289|consen 2 VCAISGEVPEEP---VVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKVPAQ 58 (506)
T ss_pred eecccCCCCCCc---cccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeecccccc
Confidence 377666654333 5555 9999999999999999999999999998888777665443
No 188
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=33.06 E-value=22 Score=25.06 Aligned_cols=47 Identities=17% Similarity=0.440 Sum_probs=28.0
Q ss_pred CCccCccccccccC--CCceEEecCCCcCCHHhHHHHHhcCC--CCcccccc
Q psy5318 95 SNLQCSVCWEQFTL--DEAVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQT 142 (176)
Q Consensus 95 ~~~~C~IC~~~~~~--~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~CP~CR~~ 142 (176)
....|.+|...|.. +....-..|+|.+|..|-.. ..... .|-+|.+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHHH
Confidence 45579999887642 22333345999999999754 11112 48888663
No 189
>PLN02400 cellulose synthase
Probab=32.72 E-value=57 Score=31.96 Aligned_cols=50 Identities=18% Similarity=0.435 Sum_probs=32.9
Q ss_pred CccCccccccccCC---CceEEec-CCCcCCHHhHHHHH-hcCCCCccccccccC
Q psy5318 96 NLQCSVCWEQFTLD---EAVRKLP-CDHFYHTPCIEPWL-QLHGTCPICRQTLHS 145 (176)
Q Consensus 96 ~~~C~IC~~~~~~~---~~~~~lp-C~H~Fh~~Ci~~wl-~~~~~CP~CR~~l~~ 145 (176)
...|.||-+++... +.-+... |+-=.|+.|.+-=- +.++.||-|+.....
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 34699999987543 3223333 77779999984311 234579999998763
No 190
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=32.58 E-value=21 Score=29.85 Aligned_cols=41 Identities=20% Similarity=0.507 Sum_probs=25.7
Q ss_pred CccCcccccccc-----C---CCceEEecCCCcCCHHhHHHHHhcCCCCccccc
Q psy5318 96 NLQCSVCWEQFT-----L---DEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141 (176)
Q Consensus 96 ~~~C~IC~~~~~-----~---~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~ 141 (176)
...|+||-..-. . .+..+.+ +|.-|-..|--.+..||.|..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL-----~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYL-----SCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEE-----EcCCCCCcccccCccCCCCCC
Confidence 347999977421 1 1233333 444577788666778999975
No 191
>KOG1842|consensus
Probab=32.39 E-value=19 Score=31.64 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=24.5
Q ss_pred cCCCccCccccccccCCCceEEec-CCCcCCHHhHHH
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEP 128 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~ 128 (176)
..+...|++|-+.|.....-.... ||.+.|..|.+.
T Consensus 177 Ds~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~ 213 (505)
T KOG1842|consen 177 DSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKF 213 (505)
T ss_pred CCcccccccccchhhhHHHhhhhhhcchHHHHHHHHh
Confidence 345677999999987553222222 888888888754
No 192
>KOG4443|consensus
Probab=32.07 E-value=20 Score=32.96 Aligned_cols=47 Identities=28% Similarity=0.600 Sum_probs=28.3
Q ss_pred CccCccccccccCCCc--eEEecCCCcCCHHhHHHHHhcC-----CCCcccccc
Q psy5318 96 NLQCSVCWEQFTLDEA--VRKLPCDHFYHTPCIEPWLQLH-----GTCPICRQT 142 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~--~~~lpC~H~Fh~~Ci~~wl~~~-----~~CP~CR~~ 142 (176)
...|.+|-..=+.... +..-.|+-.||..|+..|+... -.||-||.-
T Consensus 18 ~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvC 71 (694)
T KOG4443|consen 18 CLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVC 71 (694)
T ss_pred hhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceee
Confidence 3457777443222221 1112399999999999998543 258888763
No 193
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=31.99 E-value=23 Score=22.15 Aligned_cols=15 Identities=27% Similarity=0.769 Sum_probs=10.4
Q ss_pred cCCCCccccccccCC
Q psy5318 132 LHGTCPICRQTLHSE 146 (176)
Q Consensus 132 ~~~~CP~CR~~l~~~ 146 (176)
....||+|..+....
T Consensus 38 ~~p~CPlC~s~M~~~ 52 (59)
T PF14169_consen 38 EEPVCPLCKSPMVSG 52 (59)
T ss_pred CCccCCCcCCccccc
Confidence 345799998876543
No 194
>KOG4323|consensus
Probab=31.96 E-value=17 Score=32.00 Aligned_cols=52 Identities=27% Similarity=0.585 Sum_probs=32.4
Q ss_pred CCccCccccccccC-CCceEEe-cCCCcCCHHhHHHHHhc---C-----CCCccccccccCC
Q psy5318 95 SNLQCSVCWEQFTL-DEAVRKL-PCDHFYHTPCIEPWLQL---H-----GTCPICRQTLHSE 146 (176)
Q Consensus 95 ~~~~C~IC~~~~~~-~~~~~~l-pC~H~Fh~~Ci~~wl~~---~-----~~CP~CR~~l~~~ 146 (176)
.+..|.+|+..... ...++.. .|+..||..|.....+. . --|=+|+..-...
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~ 228 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKV 228 (464)
T ss_pred ccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhc
Confidence 34569999875432 2233333 39999999998775421 1 1488887754433
No 195
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=31.61 E-value=26 Score=24.60 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=9.6
Q ss_pred CCccccccccCC
Q psy5318 135 TCPICRQTLHSE 146 (176)
Q Consensus 135 ~CP~CR~~l~~~ 146 (176)
+||.|...+...
T Consensus 28 vCP~CG~~~~~~ 39 (108)
T PF09538_consen 28 VCPKCGTEFPPE 39 (108)
T ss_pred cCCCCCCccCcc
Confidence 599998887766
No 196
>KOG2041|consensus
Probab=31.57 E-value=30 Score=32.51 Aligned_cols=46 Identities=30% Similarity=0.629 Sum_probs=29.0
Q ss_pred CCCccCccccccccC----C----C-ceEEec-CCCcCCHHhHHHHHhcCCCCccccccc
Q psy5318 94 DSNLQCSVCWEQFTL----D----E-AVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTL 143 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~----~----~-~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~l 143 (176)
..+..|+-|...|.. + + .....| |+|.-|..=|. +.+.||+|...+
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs----~y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEIS----KYNCCPLCHSME 1184 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEcccccccccccccc----ccccCccccChh
Confidence 346678888776631 1 1 122234 99988876553 467899997654
No 197
>KOG4218|consensus
Probab=30.01 E-value=24 Score=30.12 Aligned_cols=49 Identities=27% Similarity=0.546 Sum_probs=26.2
Q ss_pred CCCccCccccccccCCCceEEec---CCCcCC--------HHhHHHH---H--hcCCCCccccccc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLP---CDHFYH--------TPCIEPW---L--QLHGTCPICRQTL 143 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lp---C~H~Fh--------~~Ci~~w---l--~~~~~CP~CR~~l 143 (176)
+.+..|++|-+.... -....|. |+-.|. ..|+..- + ..++.||.||..-
T Consensus 13 dl~ElCPVCGDkVSG-YHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQK 77 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSG-YHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQK 77 (475)
T ss_pred ccccccccccCcccc-ceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHHH
Confidence 345669999887642 2333343 544332 2344321 1 1234799999753
No 198
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=29.83 E-value=23 Score=18.09 Aligned_cols=9 Identities=33% Similarity=1.246 Sum_probs=7.2
Q ss_pred CCccccccc
Q psy5318 135 TCPICRQTL 143 (176)
Q Consensus 135 ~CP~CR~~l 143 (176)
.||+|.+.+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 589998776
No 199
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=29.18 E-value=32 Score=18.04 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=16.1
Q ss_pred cCccccccccCCCceEE-ecCCCcCCHHh
Q psy5318 98 QCSVCWEQFTLDEAVRK-LPCDHFYHTPC 125 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~-lpC~H~Fh~~C 125 (176)
.|.+|.+...... ... ..|.-.+|..|
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCcc
Confidence 3888877665432 222 23667777766
No 200
>PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse
Probab=29.16 E-value=39 Score=21.18 Aligned_cols=11 Identities=45% Similarity=1.280 Sum_probs=7.9
Q ss_pred CCCCccccccc
Q psy5318 133 HGTCPICRQTL 143 (176)
Q Consensus 133 ~~~CP~CR~~l 143 (176)
+..||+|+..+
T Consensus 2 k~~CPlCkt~~ 12 (61)
T PF05715_consen 2 KSLCPLCKTTL 12 (61)
T ss_pred CccCCcccchh
Confidence 45688887766
No 201
>PRK11595 DNA utilization protein GntX; Provisional
Probab=29.02 E-value=51 Score=25.93 Aligned_cols=38 Identities=21% Similarity=0.447 Sum_probs=21.6
Q ss_pred cCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccc
Q psy5318 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 143 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l 143 (176)
.|.+|-..+... ...+|..|...|-.....||.|..++
T Consensus 7 ~C~~C~~~~~~~--------~~~lC~~C~~~l~~~~~~C~~Cg~~~ 44 (227)
T PRK11595 7 LCWLCRMPLALS--------HWGICSVCSRALRTLKTCCPQCGLPA 44 (227)
T ss_pred cCccCCCccCCC--------CCcccHHHHhhCCcccCcCccCCCcC
Confidence 488887654322 12356677666532234688887654
No 202
>KOG1729|consensus
Probab=28.75 E-value=23 Score=29.34 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=31.7
Q ss_pred CCccCccccc-cccCCCceEEe-cCCCcCCHHhHHHHH--hc---C--CCCccccccccC
Q psy5318 95 SNLQCSVCWE-QFTLDEAVRKL-PCDHFYHTPCIEPWL--QL---H--GTCPICRQTLHS 145 (176)
Q Consensus 95 ~~~~C~IC~~-~~~~~~~~~~l-pC~H~Fh~~Ci~~wl--~~---~--~~CP~CR~~l~~ 145 (176)
+...|.+|.. .|..-+.-... .||++||..|-..-+ .. + ..|+.|=.++..
T Consensus 167 ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~~ 226 (288)
T KOG1729|consen 167 EATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELEK 226 (288)
T ss_pred cceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHhc
Confidence 4456999988 66543211112 499999999875422 11 1 169999877753
No 203
>KOG3726|consensus
Probab=28.58 E-value=27 Score=32.24 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=26.8
Q ss_pred ccCcccccccc-CCCceEEecCCCcCCHHhHHHHHhcCCCCcccc
Q psy5318 97 LQCSVCWEQFT-LDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICR 140 (176)
Q Consensus 97 ~~C~IC~~~~~-~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR 140 (176)
..|.+|...-. ..+-.+.+.|+-.||..|. +...+.||+|-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c~---~~~~~~~~vC~ 696 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVACS---LDYASISEVCG 696 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhhh---hhhhccCcccC
Confidence 45888866432 1222344569999988884 44677899993
No 204
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=28.11 E-value=7.5 Score=20.81 Aligned_cols=7 Identities=43% Similarity=1.369 Sum_probs=3.0
Q ss_pred CCccccc
Q psy5318 135 TCPICRQ 141 (176)
Q Consensus 135 ~CP~CR~ 141 (176)
.||.|..
T Consensus 23 ~C~~Cg~ 29 (32)
T PF09297_consen 23 RCPSCGH 29 (32)
T ss_dssp EESSSS-
T ss_pred ECCCCcC
Confidence 3555543
No 205
>COG5526 Lysozyme family protein [General function prediction only]
Probab=28.01 E-value=84 Score=23.74 Aligned_cols=57 Identities=30% Similarity=0.398 Sum_probs=36.2
Q ss_pred cccccchhhhhhhhhccccccccccCCCCC-------CCCCCCCCCCCCCCcccchhhHHHHHHH
Q psy5318 5 TQLAIPDWLSSKRTRRTLSASVGVSLANPE-------FAPLLPHFEGNPGDYAWGREGLDAIVTQ 62 (176)
Q Consensus 5 ~~~~ip~~f~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~~~~~~i~~ 62 (176)
++..||=|||.--+...-+...+.-+.+.+ ..|.-+-..+.| .|.|.+.++|++..+
T Consensus 52 sqT~iPW~fiG~iH~~E~SlnF~thLhNGdpL~aRT~rVPkgRp~~~~P-p~~we~sAlDAL~~~ 115 (191)
T COG5526 52 SQTGIPWWFIGLIHYRESSLNFGTHLHNGDPLGARTTRVPKGRPPFTGP-PYAWEDSALDALRLE 115 (191)
T ss_pred cccCCCeeeeehhhhhhccccccccccCCCccccceeeccCCCCCCCCC-CchhhhhHHHHHHHh
Confidence 567899999988887777777776665543 112222222222 288888889987543
No 206
>KOG2169|consensus
Probab=27.68 E-value=58 Score=30.00 Aligned_cols=46 Identities=22% Similarity=0.577 Sum_probs=26.6
Q ss_pred CccCccccccccCCCceEEecCCCcCCH--HhHHHH-H-hc---CC--CCccccccccCCCc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHT--PCIEPW-L-QL---HG--TCPICRQTLHSESA 148 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~--~Ci~~w-l-~~---~~--~CP~CR~~l~~~~~ 148 (176)
.+.|+|+...+. +||.+..|. .|...- + .. .. .||+|.+....+..
T Consensus 306 SL~CPl~~~Rm~-------~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 306 SLNCPLSKMRMS-------LPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred EecCCcccceee-------cCCcccccccceecchhhhHHhccCCCeeeCccCCccccccch
Confidence 456888866643 444444444 565443 2 11 12 59999987766654
No 207
>PF15616 TerY-C: TerY-C metal binding domain
Probab=27.29 E-value=36 Score=24.82 Aligned_cols=47 Identities=17% Similarity=0.371 Sum_probs=31.1
Q ss_pred cccCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 91 AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 91 ~~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
........||-|-..+. ..+..|+++||.. . ....+||.|.+.....
T Consensus 72 seL~g~PgCP~CGn~~~----fa~C~CGkl~Ci~---g--~~~~~CPwCg~~g~~~ 118 (131)
T PF15616_consen 72 SELIGAPGCPHCGNQYA----FAVCGCGKLFCID---G--EGEVTCPWCGNEGSFG 118 (131)
T ss_pred HHhcCCCCCCCCcChhc----EEEecCCCEEEeC---C--CCCEECCCCCCeeeec
Confidence 33445577999977643 3455799998732 2 2345899998876544
No 208
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=27.00 E-value=34 Score=29.42 Aligned_cols=39 Identities=23% Similarity=0.481 Sum_probs=25.6
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTC 136 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~C 136 (176)
.....|.-|-..- ...-..+||+..||+.|+.- .+..+|
T Consensus 37 ~gk~~C~RC~~~~--~~~~~~lp~~~~YCr~Cl~m--gRv~sd 75 (441)
T COG4098 37 NGKYRCNRCGNTH--IELFAKLPCGCLYCRNCLMM--GRVRSD 75 (441)
T ss_pred cCcEEehhcCCcc--hhhhcccccceEeehhhhhc--cccccc
Confidence 3456699997431 12236799999999999953 444444
No 209
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=26.81 E-value=54 Score=26.92 Aligned_cols=43 Identities=23% Similarity=0.403 Sum_probs=25.5
Q ss_pred CccCccccccccCCCceEEec-CCC-cCCHHhHHHH-HhcCCCCcc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLP-CDH-FYHTPCIEPW-LQLHGTCPI 138 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lp-C~H-~Fh~~Ci~~w-l~~~~~CP~ 138 (176)
-..|.||++....+-.-..|. -.- .=|+.|.++| +..+..||-
T Consensus 30 LsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~pr 75 (285)
T PF06937_consen 30 LSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCPR 75 (285)
T ss_pred eeecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCCc
Confidence 345888877654432211111 222 4568999999 567778983
No 210
>PRK04023 DNA polymerase II large subunit; Validated
Probab=26.36 E-value=38 Score=32.89 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=31.5
Q ss_pred CCccCccccccccCCCceEEec-CC-----CcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLP-CD-----HFYHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lp-C~-----H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
....|+-|-... .....| || ..||..|-.. .....||.|..++...+.
T Consensus 625 g~RfCpsCG~~t----~~frCP~CG~~Te~i~fCP~CG~~--~~~y~CPKCG~El~~~s~ 678 (1121)
T PRK04023 625 GRRKCPSCGKET----FYRRCPFCGTHTEPVYRCPRCGIE--VEEDECEKCGREPTPYSK 678 (1121)
T ss_pred cCccCCCCCCcC----CcccCCCCCCCCCcceeCccccCc--CCCCcCCCCCCCCCccce
Confidence 345688887663 224566 87 4689999432 334579999988766544
No 211
>KOG2979|consensus
Probab=26.18 E-value=33 Score=27.88 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=31.8
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhc--CCCCcccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL--HGTCPICRQT 142 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--~~~CP~CR~~ 142 (176)
...|+|-...+.++ ++-..|+|+|-+.-|...+.. .-.||+=..+
T Consensus 176 s~rdPis~~~I~nP--viSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--VISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhch--hhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 35688887777655 233349999999999998855 3358875444
No 212
>KOG1244|consensus
Probab=25.66 E-value=13 Score=30.52 Aligned_cols=50 Identities=26% Similarity=0.523 Sum_probs=32.2
Q ss_pred CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCC----CCccccccccC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQTLHS 145 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~~l~~ 145 (176)
+-..|+||-..- +++.+... .|..-||..|+.+-+..-. +|.+|-..+..
T Consensus 280 eck~csicgtse-nddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~~e 334 (336)
T KOG1244|consen 280 ECKYCSICGTSE-NDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEELKE 334 (336)
T ss_pred ecceeccccCcC-CCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHHhh
Confidence 345588886543 33333333 4999999999988664322 79999766543
No 213
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.41 E-value=54 Score=20.39 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=19.2
Q ss_pred CccCccccccccC--CCceEEec-CCCcCCHHhH
Q psy5318 96 NLQCSVCWEQFTL--DEAVRKLP-CDHFYHTPCI 126 (176)
Q Consensus 96 ~~~C~IC~~~~~~--~~~~~~lp-C~H~Fh~~Ci 126 (176)
...|+.|-..... .......+ ||+.+|.+-.
T Consensus 28 Sq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~n 61 (69)
T PF07282_consen 28 SQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRDVN 61 (69)
T ss_pred ccCccCcccccccccccceEEcCCCCCEECcHHH
Confidence 4559999776655 33444455 7777776543
No 214
>PF12773 DZR: Double zinc ribbon
Probab=25.26 E-value=51 Score=19.08 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=6.9
Q ss_pred CCCcccccccc
Q psy5318 134 GTCPICRQTLH 144 (176)
Q Consensus 134 ~~CP~CR~~l~ 144 (176)
..||.|...+.
T Consensus 30 ~~C~~Cg~~~~ 40 (50)
T PF12773_consen 30 KICPNCGAENP 40 (50)
T ss_pred CCCcCCcCCCc
Confidence 35777776543
No 215
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=25.23 E-value=65 Score=23.58 Aligned_cols=14 Identities=36% Similarity=0.807 Sum_probs=11.2
Q ss_pred CCCccccccccCCC
Q psy5318 134 GTCPICRQTLHSES 147 (176)
Q Consensus 134 ~~CP~CR~~l~~~~ 147 (176)
..||.|...+...+
T Consensus 124 f~Cp~Cg~~l~~~d 137 (147)
T smart00531 124 FTCPRCGEELEEDD 137 (147)
T ss_pred EECCCCCCEEEEcC
Confidence 57999999986554
No 216
>PRK05978 hypothetical protein; Provisional
Probab=24.97 E-value=48 Score=24.66 Aligned_cols=24 Identities=21% Similarity=0.548 Sum_probs=19.2
Q ss_pred HHHhcCCCCccccccccCCCcccC
Q psy5318 128 PWLQLHGTCPICRQTLHSESAESL 151 (176)
Q Consensus 128 ~wl~~~~~CP~CR~~l~~~~~~~~ 151 (176)
.+++.+..||.|..++.....+..
T Consensus 47 g~Lkv~~~C~~CG~~~~~~~a~Dg 70 (148)
T PRK05978 47 AFLKPVDHCAACGEDFTHHRADDL 70 (148)
T ss_pred cccccCCCccccCCccccCCcccc
Confidence 577889999999999887765543
No 217
>KOG4451|consensus
Probab=24.80 E-value=49 Score=26.55 Aligned_cols=28 Identities=18% Similarity=0.449 Sum_probs=17.9
Q ss_pred CCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 121 YHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 121 Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
.|..|...--+....||+|+..--+.++
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsRSrNP 278 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSRSRNP 278 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccccCCC
Confidence 4455555544566799999887655443
No 218
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=24.61 E-value=43 Score=19.58 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCCccCccccccc--cCCCceEEecCCCcCCHHhHHH
Q psy5318 94 DSNLQCSVCWEQF--TLDEAVRKLPCDHFYHTPCIEP 128 (176)
Q Consensus 94 ~~~~~C~IC~~~~--~~~~~~~~lpC~H~Fh~~Ci~~ 128 (176)
.....|.+|.+.+ .......-..|+-..|.+|+..
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCT
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhh
Confidence 3455699998887 2233344445999999999754
No 219
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=24.39 E-value=47 Score=23.38 Aligned_cols=11 Identities=27% Similarity=0.761 Sum_probs=7.5
Q ss_pred ccCcccccccc
Q psy5318 97 LQCSVCWEQFT 107 (176)
Q Consensus 97 ~~C~IC~~~~~ 107 (176)
+.|+-|..+|.
T Consensus 3 p~CP~C~seyt 13 (109)
T TIGR00686 3 PPCPKCNSEYT 13 (109)
T ss_pred CcCCcCCCcce
Confidence 34888877654
No 220
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=24.37 E-value=11 Score=21.51 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=12.8
Q ss_pred cCCCcCCHHhHHHHHhcCCCCccccc
Q psy5318 116 PCDHFYHTPCIEPWLQLHGTCPICRQ 141 (176)
Q Consensus 116 pC~H~Fh~~Ci~~wl~~~~~CP~CR~ 141 (176)
.|||.|-..--..= .....||.|..
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCC
Confidence 37766654211100 12336999987
No 221
>PRK02935 hypothetical protein; Provisional
Probab=23.83 E-value=72 Score=22.38 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=14.8
Q ss_pred HHHhcCCCCccccccccCCC
Q psy5318 128 PWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 128 ~wl~~~~~CP~CR~~l~~~~ 147 (176)
+.|.+...|..|++++..+.
T Consensus 81 KmLGrvD~CM~C~~PLTLd~ 100 (110)
T PRK02935 81 KMLGRVDACMHCNQPLTLDR 100 (110)
T ss_pred hhccceeecCcCCCcCCcCc
Confidence 34566678999999987654
No 222
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=23.76 E-value=36 Score=17.72 Aligned_cols=11 Identities=45% Similarity=1.129 Sum_probs=5.7
Q ss_pred CCccccccccC
Q psy5318 135 TCPICRQTLHS 145 (176)
Q Consensus 135 ~CP~CR~~l~~ 145 (176)
.||.|..++..
T Consensus 1 ~CP~C~s~l~~ 11 (28)
T PF03119_consen 1 TCPVCGSKLVR 11 (28)
T ss_dssp B-TTT--BEEE
T ss_pred CcCCCCCEeEc
Confidence 48888888763
No 223
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=22.54 E-value=41 Score=20.82 Aligned_cols=11 Identities=36% Similarity=1.035 Sum_probs=3.9
Q ss_pred CCccccccccC
Q psy5318 135 TCPICRQTLHS 145 (176)
Q Consensus 135 ~CP~CR~~l~~ 145 (176)
.||.|++++..
T Consensus 4 ~CP~C~k~~~~ 14 (57)
T PF03884_consen 4 KCPICGKPVEW 14 (57)
T ss_dssp E-TTT--EEE-
T ss_pred cCCCCCCeecc
Confidence 46666665543
No 224
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=22.43 E-value=60 Score=20.48 Aligned_cols=9 Identities=33% Similarity=1.217 Sum_probs=5.2
Q ss_pred CCccccccc
Q psy5318 135 TCPICRQTL 143 (176)
Q Consensus 135 ~CP~CR~~l 143 (176)
.||.|++.+
T Consensus 8 ~CP~C~k~~ 16 (62)
T PRK00418 8 NCPTCGKPV 16 (62)
T ss_pred cCCCCCCcc
Confidence 466666654
No 225
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=22.29 E-value=60 Score=28.54 Aligned_cols=31 Identities=23% Similarity=0.507 Sum_probs=19.7
Q ss_pred ccCcccccccc---CCCceEEec-CCCcCCHHhHHH
Q psy5318 97 LQCSVCWEQFT---LDEAVRKLP-CDHFYHTPCIEP 128 (176)
Q Consensus 97 ~~C~IC~~~~~---~~~~~~~lp-C~H~Fh~~Ci~~ 128 (176)
=.|.||.. |. ++-.++... |+|+-|..|..+
T Consensus 129 C~C~iC~k-fD~~~n~~~Wi~Cd~CgH~cH~dCALr 163 (446)
T PF07227_consen 129 CMCCICSK-FDDNKNTCSWIGCDVCGHWCHLDCALR 163 (446)
T ss_pred CCccccCC-cccCCCCeeEEeccCCCceehhhhhcc
Confidence 34778855 32 222344444 999999999865
No 226
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.24 E-value=69 Score=25.58 Aligned_cols=28 Identities=18% Similarity=0.455 Sum_probs=17.8
Q ss_pred CCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 121 YHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 121 Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
-|..|-..--+.-..||+|+..--+.++
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSrnp 223 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSRNP 223 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccCCC
Confidence 3455665544566799999886554443
No 227
>KOG1701|consensus
Probab=21.79 E-value=69 Score=28.10 Aligned_cols=43 Identities=35% Similarity=0.620 Sum_probs=25.6
Q ss_pred ccCccccccccCC----CceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318 97 LQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 97 ~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 147 (176)
..|++|-+.+... +.+++..=+..||..|. .|--|+..|..+.
T Consensus 395 PrCs~C~~PI~P~~G~~etvRvvamdr~fHv~CY--------~CEDCg~~LS~e~ 441 (468)
T KOG1701|consen 395 PRCSVCGNPILPRDGKDETVRVVAMDRDFHVNCY--------KCEDCGLLLSSEE 441 (468)
T ss_pred cchhhccCCccCCCCCcceEEEEEccccccccce--------ehhhcCccccccC
Confidence 4577777765432 24455545677777776 3666666665443
No 228
>PRK01343 zinc-binding protein; Provisional
Probab=21.70 E-value=48 Score=20.58 Aligned_cols=12 Identities=25% Similarity=0.692 Sum_probs=8.9
Q ss_pred CCCCcccccccc
Q psy5318 133 HGTCPICRQTLH 144 (176)
Q Consensus 133 ~~~CP~CR~~l~ 144 (176)
...||+|++++.
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 346999988764
No 229
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=21.66 E-value=51 Score=26.60 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=28.5
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhc--CCCCcc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL--HGTCPI 138 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--~~~CP~ 138 (176)
+..|+|-+..+.-+ ..-..|+|.|-.+-|...++. ...||.
T Consensus 189 ~nrCpitl~p~~~p--ils~kcnh~~e~D~I~~~lq~~~trvcp~ 231 (275)
T COG5627 189 SNRCPITLNPDFYP--ILSSKCNHKPEMDLINKKLQVECTRVCPR 231 (275)
T ss_pred cccCCcccCcchhH--HHHhhhcccccHHHHHHHhcCCceeecch
Confidence 46799987765543 122249999999999998873 345764
No 230
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=21.57 E-value=32 Score=27.01 Aligned_cols=50 Identities=22% Similarity=0.576 Sum_probs=28.4
Q ss_pred CCccCccccccccCCC----ceEEe-----cCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318 95 SNLQCSVCWEQFTLDE----AVRKL-----PCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~----~~~~l-----pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 147 (176)
...+||+|-..|.... ..++. .|.|.=. +.+.+-.-.+||.|.......+
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~---vnP~~Y~V~vCP~CgyA~~~~~ 62 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKG---VNPLFYEVWVCPHCGYAAFEED 62 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCC---CCCeeeeEEECCCCCCcccccc
Confidence 3456999999987541 11111 1444222 4444444447999988765553
No 231
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=21.46 E-value=52 Score=22.07 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=17.2
Q ss_pred HHHhcCCCCccccccccCCCccc
Q psy5318 128 PWLQLHGTCPICRQTLHSESAES 150 (176)
Q Consensus 128 ~wl~~~~~CP~CR~~l~~~~~~~ 150 (176)
.+|+-...|+.|..++...+.++
T Consensus 3 g~Lk~~~~C~~CG~d~~~~~adD 25 (86)
T PF06170_consen 3 GYLKVAPRCPHCGLDYSHARADD 25 (86)
T ss_pred ccccCCCcccccCCccccCCcCc
Confidence 35677889999999887766543
No 232
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=21.41 E-value=33 Score=20.90 Aligned_cols=9 Identities=56% Similarity=1.431 Sum_probs=3.6
Q ss_pred CCccccccc
Q psy5318 135 TCPICRQTL 143 (176)
Q Consensus 135 ~CP~CR~~l 143 (176)
+||+|...+
T Consensus 26 tCP~C~a~~ 34 (54)
T PF09237_consen 26 TCPICGAVI 34 (54)
T ss_dssp E-TTT--EE
T ss_pred CCCcchhhc
Confidence 567766544
No 233
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=21.25 E-value=77 Score=22.04 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=24.1
Q ss_pred cCccccccccCCCceEEecCCCcCCHHhHHHHH
Q psy5318 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWL 130 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl 130 (176)
.|.||-+.+..++.-..++= -..|..|+..=.
T Consensus 4 kC~iCg~~I~~gqlFTF~~k-G~VH~~C~~~~~ 35 (101)
T PF09943_consen 4 KCYICGKPIYEGQLFTFTKK-GPVHYECFREKA 35 (101)
T ss_pred EEEecCCeeeecceEEEecC-CcEeHHHHHHHH
Confidence 59999999888765555544 678999997654
No 234
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=21.22 E-value=18 Score=24.90 Aligned_cols=52 Identities=19% Similarity=0.545 Sum_probs=16.2
Q ss_pred ccCccccccccCCC-ceEEecCCCcCCHHhHHHHHhc----CCCCccccccccCCCcc
Q psy5318 97 LQCSVCWEQFTLDE-AVRKLPCDHFYHTPCIEPWLQL----HGTCPICRQTLHSESAE 149 (176)
Q Consensus 97 ~~C~IC~~~~~~~~-~~~~lpC~H~Fh~~Ci~~wl~~----~~~CP~CR~~l~~~~~~ 149 (176)
..|+||.+.+...+ ...+.+=||.|- .|....+-- ...|++|..........
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w~-RC~lT~l~i~~~~~r~C~~C~~~~l~~~~~ 71 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVWP-RCALTFLPIQTPGVRVCPVCGRRALDPEPE 71 (99)
T ss_dssp --------------SSEEE-TTS-EEE-B-SSS-SBS-SS-EEE-TTT--EEE-GGG-
T ss_pred ccccccccccccCCcCEeECCCCCEEe-eeeeeeeeeccCCeeEcCCCCCEEecCccc
Confidence 45999988776443 334445678874 455444311 14799999877655443
No 235
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.87 E-value=63 Score=23.60 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=15.2
Q ss_pred ccccccccCCCceEEecCCCcCCHH
Q psy5318 100 SVCWEQFTLDEAVRKLPCDHFYHTP 124 (176)
Q Consensus 100 ~IC~~~~~~~~~~~~lpC~H~Fh~~ 124 (176)
-||...- ..+.+..|||.|+..
T Consensus 61 fi~qs~~---~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSAQ---KRVIRCECGHSFGDY 82 (165)
T ss_pred EEEeccc---ccEEEEeccccccCh
Confidence 4665542 346777899999864
No 236
>KOG2071|consensus
Probab=20.61 E-value=48 Score=30.14 Aligned_cols=35 Identities=20% Similarity=0.533 Sum_probs=22.6
Q ss_pred CCccCccccccccCC-----Cce-----EEecCCCcCCHHhHHHH
Q psy5318 95 SNLQCSVCWEQFTLD-----EAV-----RKLPCDHFYHTPCIEPW 129 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~-----~~~-----~~lpC~H~Fh~~Ci~~w 129 (176)
....|+||.+.|+.- +.+ +.+-=|-+||..|+..-
T Consensus 512 ~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 512 RQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred cccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 345699999987521 111 11224889999998664
No 237
>KOG4577|consensus
Probab=20.55 E-value=23 Score=29.41 Aligned_cols=39 Identities=33% Similarity=0.710 Sum_probs=25.6
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
..|+.|.+.+... .|++-.=.|+||.+|.. |-+|++.|.
T Consensus 93 TKCsaC~~GIpPt-qVVRkAqd~VYHl~CF~--------C~iC~R~L~ 131 (383)
T KOG4577|consen 93 TKCSACQEGIPPT-QVVRKAQDFVYHLHCFA--------CFICKRQLA 131 (383)
T ss_pred CcchhhcCCCChH-HHHHHhhcceeehhhhh--------hHhhhcccc
Confidence 4599998887654 33333478999999874 555555443
No 238
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=20.42 E-value=23 Score=26.52 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=12.8
Q ss_pred hcCCCCccccccccCCC
Q psy5318 131 QLHGTCPICRQTLHSES 147 (176)
Q Consensus 131 ~~~~~CP~CR~~l~~~~ 147 (176)
.....||.|...+...+
T Consensus 126 ~~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 126 ELNFTCPRCGAMLDYLD 142 (158)
T ss_pred HcCCcCCCCCCEeeecc
Confidence 35678999999886553
No 239
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=20.30 E-value=46 Score=20.85 Aligned_cols=13 Identities=31% Similarity=1.002 Sum_probs=9.5
Q ss_pred CCccccccccCCC
Q psy5318 135 TCPICRQTLHSES 147 (176)
Q Consensus 135 ~CP~CR~~l~~~~ 147 (176)
.||+||.++....
T Consensus 10 aCP~~kg~L~~~~ 22 (60)
T COG2835 10 ACPVCKGPLVYDE 22 (60)
T ss_pred eccCcCCcceEec
Confidence 5999998875443
No 240
>PRK11827 hypothetical protein; Provisional
Probab=20.27 E-value=38 Score=21.20 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=7.2
Q ss_pred CCCCccccccccC
Q psy5318 133 HGTCPICRQTLHS 145 (176)
Q Consensus 133 ~~~CP~CR~~l~~ 145 (176)
--.||+|+.++..
T Consensus 8 ILaCP~ckg~L~~ 20 (60)
T PRK11827 8 IIACPVCNGKLWY 20 (60)
T ss_pred heECCCCCCcCeE
Confidence 3346666666543
No 241
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=20.14 E-value=72 Score=18.04 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=21.6
Q ss_pred CccCccccccccCC--CceEEecCCCcCCHHhHHH
Q psy5318 96 NLQCSVCWEQFTLD--EAVRKLPCDHFYHTPCIEP 128 (176)
Q Consensus 96 ~~~C~IC~~~~~~~--~~~~~lpC~H~Fh~~Ci~~ 128 (176)
...|.+|.+.+... ....-..|+-..|..|...
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 34599998877542 2223234888999998754
Done!