Query psy5318
Match_columns 176
No_of_seqs 199 out of 1851
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 23:34:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 3.7E-18 1.3E-22 116.3 5.7 77 69-145 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 3E-17 1E-21 107.6 2.3 68 79-146 5-73 (75)
3 2ect_A Ring finger protein 126 99.6 2.8E-16 9.5E-21 103.6 5.5 59 93-151 12-70 (78)
4 2ep4_A Ring finger protein 24; 99.6 3.4E-16 1.1E-20 102.1 5.7 55 94-148 13-67 (74)
5 2kiz_A E3 ubiquitin-protein li 99.6 4.6E-16 1.6E-20 100.2 5.7 54 94-147 12-65 (69)
6 1iym_A EL5; ring-H2 finger, ub 99.6 3.8E-16 1.3E-20 96.1 3.8 51 94-144 3-54 (55)
7 2djb_A Polycomb group ring fin 99.5 1.5E-14 5.1E-19 93.9 5.6 56 93-151 12-68 (72)
8 3ng2_A RNF4, snurf, ring finge 99.5 8.4E-15 2.9E-19 94.5 3.5 55 94-148 8-66 (71)
9 2ecm_A Ring finger and CHY zin 99.5 1.1E-14 3.6E-19 89.5 3.8 50 95-144 4-54 (55)
10 2ea6_A Ring finger protein 4; 99.5 1.1E-14 3.6E-19 93.3 3.2 52 94-145 13-68 (69)
11 2d8t_A Dactylidin, ring finger 99.5 7.4E-15 2.5E-19 95.1 2.1 52 94-148 13-64 (71)
12 2ecl_A Ring-box protein 2; RNF 99.5 6.9E-15 2.4E-19 97.9 1.3 51 96-146 15-77 (81)
13 2xeu_A Ring finger protein 4; 99.5 1.8E-14 6.2E-19 90.9 3.1 53 96-148 3-59 (64)
14 1v87_A Deltex protein 2; ring- 99.5 4.4E-14 1.5E-18 99.4 5.0 51 96-146 25-95 (114)
15 2ecn_A Ring finger protein 141 99.5 3.5E-14 1.2E-18 91.5 3.5 50 94-147 13-62 (70)
16 3dpl_R Ring-box protein 1; ubi 99.4 4.1E-14 1.4E-18 98.9 4.1 52 95-146 36-102 (106)
17 2yur_A Retinoblastoma-binding 99.4 1E-13 3.5E-18 90.5 5.1 52 93-147 12-66 (74)
18 2ct2_A Tripartite motif protei 99.4 1.5E-13 5E-18 92.1 5.5 55 93-147 12-70 (88)
19 1chc_A Equine herpes virus-1 r 99.4 7.5E-14 2.6E-18 89.3 3.7 49 95-145 4-52 (68)
20 2ecy_A TNF receptor-associated 99.4 1.1E-13 3.7E-18 88.2 3.8 51 94-147 13-64 (66)
21 2csy_A Zinc finger protein 183 99.4 1.1E-13 3.9E-18 91.6 3.8 48 94-144 13-60 (81)
22 2ysl_A Tripartite motif-contai 99.4 1.4E-13 4.8E-18 89.2 4.0 52 93-147 17-71 (73)
23 1t1h_A Gspef-atpub14, armadill 99.4 1.7E-13 5.8E-18 90.0 4.1 52 93-147 5-57 (78)
24 2d8s_A Cellular modulator of i 99.4 2.8E-13 9.6E-18 90.0 5.1 53 94-147 13-72 (80)
25 4ayc_A E3 ubiquitin-protein li 99.4 1.5E-13 5.2E-18 100.0 3.3 49 95-146 52-100 (138)
26 2ecw_A Tripartite motif-contai 99.4 4.8E-13 1.6E-17 88.7 5.1 52 93-147 16-73 (85)
27 3lrq_A E3 ubiquitin-protein li 99.3 7.9E-14 2.7E-18 96.2 0.1 52 94-148 20-73 (100)
28 2ecv_A Tripartite motif-contai 99.3 6.1E-13 2.1E-17 88.2 4.3 52 93-147 16-73 (85)
29 2egp_A Tripartite motif-contai 99.3 1.6E-13 5.4E-18 90.2 1.1 52 93-147 9-67 (79)
30 4a0k_B E3 ubiquitin-protein li 99.3 1.2E-13 4.2E-18 98.0 0.2 52 95-146 47-113 (117)
31 2ysj_A Tripartite motif-contai 99.3 1.2E-12 4.2E-17 82.5 4.5 44 93-139 17-63 (63)
32 2ct0_A Non-SMC element 1 homol 99.3 1.1E-12 3.7E-17 85.7 4.3 53 95-150 14-69 (74)
33 2y43_A E3 ubiquitin-protein li 99.3 3.9E-13 1.3E-17 92.3 2.1 49 95-146 21-70 (99)
34 3ztg_A E3 ubiquitin-protein li 99.3 1.1E-12 3.9E-17 88.7 4.3 49 93-144 10-61 (92)
35 2ckl_A Polycomb group ring fin 99.3 6.9E-13 2.4E-17 92.5 2.8 51 93-146 12-63 (108)
36 4ap4_A E3 ubiquitin ligase RNF 99.3 1.2E-12 4.1E-17 93.7 3.4 56 95-150 6-65 (133)
37 1g25_A CDK-activating kinase a 99.3 2.5E-12 8.5E-17 81.6 3.9 53 96-148 3-58 (65)
38 2ecj_A Tripartite motif-contai 99.3 2.4E-12 8.2E-17 79.5 3.3 44 93-139 12-58 (58)
39 3fl2_A E3 ubiquitin-protein li 99.3 2.2E-12 7.4E-17 92.1 3.4 49 94-145 50-99 (124)
40 1z6u_A NP95-like ring finger p 99.3 1.4E-12 4.7E-17 96.4 2.1 50 94-146 76-126 (150)
41 1jm7_A BRCA1, breast cancer ty 99.2 4E-12 1.4E-16 88.8 3.9 50 96-148 21-73 (112)
42 2kr4_A Ubiquitin conjugation f 99.2 5.6E-12 1.9E-16 84.5 3.9 51 94-147 12-62 (85)
43 2ckl_B Ubiquitin ligase protei 99.2 1.4E-12 4.7E-17 97.5 0.9 48 95-145 53-102 (165)
44 3hct_A TNF receptor-associated 99.2 3.7E-12 1.3E-16 90.2 2.4 52 93-147 15-67 (118)
45 2kre_A Ubiquitin conjugation f 99.2 6.8E-12 2.3E-16 86.6 3.7 52 94-148 27-78 (100)
46 1wgm_A Ubiquitin conjugation f 99.2 9.9E-12 3.4E-16 85.5 3.9 52 94-148 20-72 (98)
47 4ap4_A E3 ubiquitin ligase RNF 99.2 7.6E-12 2.6E-16 89.4 3.1 54 94-147 70-127 (133)
48 3knv_A TNF receptor-associated 99.2 8.7E-12 3E-16 91.2 2.7 52 92-146 27-79 (141)
49 3l11_A E3 ubiquitin-protein li 99.2 5.2E-12 1.8E-16 88.9 1.1 48 95-145 14-62 (115)
50 1rmd_A RAG1; V(D)J recombinati 99.2 1.5E-11 5.1E-16 86.7 3.4 50 95-147 22-72 (116)
51 1e4u_A Transcriptional repress 99.1 6.2E-11 2.1E-15 78.2 5.6 55 93-148 8-65 (78)
52 1bor_A Transcription factor PM 99.1 1.1E-11 3.8E-16 76.5 1.3 47 94-146 4-50 (56)
53 2vje_A E3 ubiquitin-protein li 99.1 2.3E-11 7.8E-16 77.2 2.6 47 95-144 7-56 (64)
54 1jm7_B BARD1, BRCA1-associated 99.1 1.8E-11 6.3E-16 86.5 1.3 47 95-146 21-68 (117)
55 2vje_B MDM4 protein; proto-onc 99.1 4.8E-11 1.6E-15 75.5 2.6 47 95-144 6-55 (63)
56 2y1n_A E3 ubiquitin-protein li 99.1 7.1E-11 2.4E-15 99.1 4.3 50 96-148 332-382 (389)
57 4ic3_A E3 ubiquitin-protein li 99.1 1.5E-11 5.2E-16 80.2 -0.0 44 95-145 23-67 (74)
58 2c2l_A CHIP, carboxy terminus 99.0 1.4E-10 4.8E-15 92.5 3.1 51 94-147 206-257 (281)
59 2yu4_A E3 SUMO-protein ligase 99.0 1.3E-10 4.3E-15 79.2 2.2 51 94-147 5-65 (94)
60 3hcs_A TNF receptor-associated 99.0 1.7E-10 5.7E-15 86.5 2.4 51 93-146 15-66 (170)
61 2f42_A STIP1 homology and U-bo 98.9 6.3E-10 2.2E-14 84.3 3.1 53 93-148 103-156 (179)
62 3k1l_B Fancl; UBC, ring, RWD, 98.8 7.5E-10 2.6E-14 91.1 2.0 52 94-145 306-373 (381)
63 2ecg_A Baculoviral IAP repeat- 98.8 1.3E-09 4.4E-14 71.0 2.3 43 96-145 25-68 (75)
64 2ea5_A Cell growth regulator w 98.8 4.2E-09 1.5E-13 67.4 4.5 46 94-146 13-59 (68)
65 1vyx_A ORF K3, K3RING; zinc-bi 98.8 4E-09 1.4E-13 65.9 3.4 48 94-144 4-58 (60)
66 2bay_A PRE-mRNA splicing facto 98.8 3E-09 1E-13 66.7 2.4 52 97-151 4-56 (61)
67 1wim_A KIAA0161 protein; ring 98.7 4.4E-09 1.5E-13 71.3 2.5 51 95-145 4-66 (94)
68 2yho_A E3 ubiquitin-protein li 98.7 3.3E-09 1.1E-13 69.9 1.7 44 96-146 18-62 (79)
69 3htk_C E3 SUMO-protein ligase 98.6 8.9E-09 3E-13 81.9 2.2 53 94-148 179-235 (267)
70 3t6p_A Baculoviral IAP repeat- 98.6 5.5E-09 1.9E-13 86.7 0.2 45 94-145 293-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.3 2.4E-07 8.1E-12 63.0 3.2 48 98-147 3-51 (101)
72 3nw0_A Non-structural maintena 98.3 1E-06 3.4E-11 69.5 5.7 52 95-149 179-233 (238)
73 2ko5_A Ring finger protein Z; 97.5 7E-05 2.4E-09 50.1 3.4 56 94-154 26-82 (99)
74 1wil_A KIAA1045 protein; ring 96.3 0.003 1E-07 41.3 3.2 34 92-129 11-47 (89)
75 2jun_A Midline-1; B-BOX, TRIM, 95.6 0.006 2.1E-07 41.0 2.3 34 96-129 3-36 (101)
76 2lri_C Autoimmune regulator; Z 95.1 0.014 4.8E-07 36.6 2.8 44 95-142 11-59 (66)
77 1we9_A PHD finger family prote 93.7 0.017 5.9E-07 35.6 0.8 49 94-142 4-58 (64)
78 2l5u_A Chromodomain-helicase-D 93.0 0.05 1.7E-06 33.3 2.1 45 94-142 9-58 (61)
79 1wev_A Riken cDNA 1110020M19; 91.5 0.035 1.2E-06 36.7 0.0 53 95-147 15-77 (88)
80 2e6r_A Jumonji/ARID domain-con 91.5 0.063 2.2E-06 35.7 1.3 50 94-144 14-68 (92)
81 3m62_A Ubiquitin conjugation f 91.4 0.12 4.1E-06 47.9 3.3 52 94-148 889-941 (968)
82 3lqh_A Histone-lysine N-methyl 91.3 0.064 2.2E-06 40.3 1.3 47 97-143 3-64 (183)
83 1wep_A PHF8; structural genomi 90.6 0.33 1.1E-05 31.0 4.1 47 96-143 12-64 (79)
84 1f62_A Transcription factor WS 90.6 0.094 3.2E-06 30.7 1.3 43 98-141 2-49 (51)
85 2k16_A Transcription initiatio 90.5 0.062 2.1E-06 34.1 0.5 50 94-144 16-70 (75)
86 2l43_A N-teminal domain from h 88.3 0.18 6E-06 33.2 1.4 53 94-146 23-79 (88)
87 2yql_A PHD finger protein 21A; 88.3 0.053 1.8E-06 32.5 -1.1 44 94-141 7-55 (56)
88 3u5n_A E3 ubiquitin-protein li 88.2 0.09 3.1E-06 40.0 -0.0 46 95-144 6-56 (207)
89 3o36_A Transcription intermedi 87.8 0.35 1.2E-05 35.9 3.0 45 96-144 4-53 (184)
90 1mm2_A MI2-beta; PHD, zinc fin 87.6 0.086 2.9E-06 32.2 -0.4 44 95-142 8-56 (61)
91 1fp0_A KAP-1 corepressor; PHD 87.6 0.28 9.6E-06 32.3 2.0 45 94-142 23-72 (88)
92 3v43_A Histone acetyltransfera 87.1 0.14 5E-06 35.0 0.4 44 98-141 63-111 (112)
93 2yt5_A Metal-response element- 86.9 0.088 3E-06 32.5 -0.7 50 94-143 4-62 (66)
94 2xb1_A Pygopus homolog 2, B-ce 86.9 0.12 4.1E-06 35.2 -0.0 48 97-144 4-63 (105)
95 2ku3_A Bromodomain-containing 86.4 0.21 7.2E-06 31.5 0.9 49 94-142 14-66 (71)
96 2puy_A PHD finger protein 21A; 86.0 0.079 2.7E-06 32.2 -1.2 45 96-144 5-54 (60)
97 2kgg_A Histone demethylase jar 85.3 0.59 2E-05 27.4 2.5 42 99-140 5-52 (52)
98 1xwh_A Autoimmune regulator; P 84.3 0.23 7.8E-06 30.7 0.3 44 95-142 7-55 (66)
99 2vpb_A Hpygo1, pygopus homolog 84.1 0.67 2.3E-05 28.6 2.5 33 94-126 6-40 (65)
100 2cs3_A Protein C14ORF4, MY039 82.8 1.1 3.7E-05 29.0 3.0 39 94-133 13-53 (93)
101 4fo9_A E3 SUMO-protein ligase 81.5 0.93 3.2E-05 37.4 3.0 50 96-148 215-269 (360)
102 2ri7_A Nucleosome-remodeling f 81.4 0.32 1.1E-05 35.7 0.2 47 95-142 7-59 (174)
103 1wee_A PHD finger family prote 80.8 0.23 7.9E-06 31.2 -0.7 48 95-143 15-67 (72)
104 2ysm_A Myeloid/lymphoid or mix 80.5 0.42 1.4E-05 32.5 0.5 37 95-131 6-42 (111)
105 2lv9_A Histone-lysine N-methyl 80.2 0.31 1.1E-05 32.6 -0.2 43 97-141 29-75 (98)
106 1weo_A Cellulose synthase, cat 79.8 5.7 0.00019 26.1 5.7 50 96-145 16-70 (93)
107 2lbm_A Transcriptional regulat 79.8 1.9 6.4E-05 30.9 3.8 43 95-141 62-116 (142)
108 3v43_A Histone acetyltransfera 78.2 3.4 0.00011 28.0 4.6 33 95-127 4-42 (112)
109 1y02_A CARP2, FYVE-ring finger 77.4 0.35 1.2E-05 33.7 -0.7 47 97-143 20-67 (120)
110 2ro1_A Transcription intermedi 77.2 0.4 1.4E-05 35.9 -0.4 44 96-143 2-50 (189)
111 1wem_A Death associated transc 75.8 0.93 3.2E-05 28.6 1.1 45 97-143 17-71 (76)
112 4gne_A Histone-lysine N-methyl 75.6 2.3 7.8E-05 28.9 3.1 48 94-147 13-67 (107)
113 1z2q_A LM5-1; membrane protein 74.9 2.2 7.4E-05 27.5 2.7 50 95-144 20-78 (84)
114 3i2d_A E3 SUMO-protein ligase 74.7 2.3 7.8E-05 35.2 3.4 50 96-148 249-303 (371)
115 1weu_A Inhibitor of growth fam 74.5 1.4 4.9E-05 29.0 1.8 44 95-143 35-86 (91)
116 1vfy_A Phosphatidylinositol-3- 73.9 2.2 7.7E-05 26.6 2.5 32 97-128 12-44 (73)
117 1wfk_A Zinc finger, FYVE domai 73.8 2.1 7.1E-05 27.9 2.4 54 94-147 7-68 (88)
118 1joc_A EEA1, early endosomal a 73.7 2 6.9E-05 29.9 2.5 33 96-128 69-102 (125)
119 1wew_A DNA-binding family prot 73.6 0.79 2.7E-05 29.2 0.3 47 95-143 15-73 (78)
120 1iml_A CRIP, cysteine rich int 73.5 0.96 3.3E-05 28.1 0.7 11 97-107 28-38 (76)
121 2yw8_A RUN and FYVE domain-con 73.5 2.3 7.7E-05 27.2 2.5 50 95-144 18-74 (82)
122 3ql9_A Transcriptional regulat 73.3 3.7 0.00013 28.9 3.8 43 95-141 56-110 (129)
123 2a20_A Regulating synaptic mem 73.3 0.27 9.2E-06 29.8 -1.8 49 94-142 7-60 (62)
124 3t7l_A Zinc finger FYVE domain 72.7 2.1 7.3E-05 27.9 2.3 49 96-144 20-75 (90)
125 3o70_A PHD finger protein 13; 72.1 0.77 2.6E-05 28.5 -0.0 45 95-141 18-66 (68)
126 3zyq_A Hepatocyte growth facto 72.1 4.3 0.00015 31.0 4.2 49 96-144 164-221 (226)
127 1x4u_A Zinc finger, FYVE domai 71.7 2.6 9E-05 27.0 2.6 34 95-128 13-47 (84)
128 1x64_A Alpha-actinin-2 associa 71.2 3 0.0001 26.7 2.8 42 94-146 23-64 (89)
129 2cu8_A Cysteine-rich protein 2 71.0 1.5 5.2E-05 27.1 1.2 41 96-146 9-49 (76)
130 1dvp_A HRS, hepatocyte growth 70.6 2 6.9E-05 32.6 2.1 33 96-128 161-194 (220)
131 1z60_A TFIIH basal transcripti 69.8 1.4 4.7E-05 26.8 0.7 42 97-139 16-58 (59)
132 3shb_A E3 ubiquitin-protein li 69.7 0.39 1.3E-05 30.8 -1.8 43 98-141 28-76 (77)
133 2ysm_A Myeloid/lymphoid or mix 69.4 0.74 2.5E-05 31.2 -0.6 44 98-142 56-104 (111)
134 2dar_A PDZ and LIM domain prot 68.4 2.4 8.1E-05 27.2 1.8 40 96-146 25-64 (90)
135 1wen_A Inhibitor of growth fam 68.0 1.8 6.3E-05 27.0 1.1 44 95-143 15-66 (71)
136 2dj7_A Actin-binding LIM prote 67.7 2.9 9.8E-05 26.3 2.0 40 95-144 14-53 (80)
137 3ask_A E3 ubiquitin-protein li 66.8 1.2 3.9E-05 34.5 -0.0 43 98-141 176-224 (226)
138 2kwj_A Zinc finger protein DPF 66.3 0.37 1.3E-05 33.1 -2.7 47 98-145 60-111 (114)
139 3asl_A E3 ubiquitin-protein li 66.2 0.7 2.4E-05 28.9 -1.2 43 98-141 20-68 (70)
140 2d8z_A Four and A half LIM dom 66.1 3.2 0.00011 25.0 2.0 38 97-145 6-43 (70)
141 2e6s_A E3 ubiquitin-protein li 65.7 0.77 2.6E-05 29.3 -1.1 43 98-141 28-76 (77)
142 1zbd_B Rabphilin-3A; G protein 65.3 3 0.0001 29.4 1.9 49 94-142 53-107 (134)
143 2d8v_A Zinc finger FYVE domain 65.2 3.9 0.00013 25.3 2.1 32 94-129 6-38 (67)
144 1x61_A Thyroid receptor intera 64.0 4.4 0.00015 24.5 2.3 39 97-144 6-44 (72)
145 1x62_A C-terminal LIM domain p 63.7 3.3 0.00011 25.8 1.7 39 96-145 15-53 (79)
146 2o35_A Hypothetical protein DU 63.6 3 0.0001 27.9 1.5 12 120-131 42-53 (105)
147 3fyb_A Protein of unknown func 63.4 3.1 0.00011 27.8 1.5 12 120-131 41-52 (104)
148 1x63_A Skeletal muscle LIM-pro 63.0 4 0.00014 25.4 2.1 41 97-146 16-56 (82)
149 2co8_A NEDD9 interacting prote 62.2 4.1 0.00014 25.6 2.0 43 95-147 14-56 (82)
150 2jmi_A Protein YNG1, ING1 homo 60.4 1.7 5.8E-05 28.6 -0.1 43 94-141 24-75 (90)
151 1x4l_A Skeletal muscle LIM-pro 60.4 4.4 0.00015 24.6 1.8 41 97-146 6-48 (72)
152 2cur_A Skeletal muscle LIM-pro 60.4 3.6 0.00012 24.8 1.4 38 97-145 6-43 (69)
153 2d8x_A Protein pinch; LIM doma 60.3 3.5 0.00012 24.9 1.3 39 97-146 6-44 (70)
154 1nyp_A Pinch protein; LIM doma 60.3 3.3 0.00011 24.7 1.2 38 97-145 6-43 (66)
155 2ku7_A MLL1 PHD3-CYP33 RRM chi 60.3 8.5 0.00029 26.0 3.6 27 117-143 8-45 (140)
156 1wyh_A SLIM 2, skeletal muscle 58.9 5 0.00017 24.2 1.9 41 97-146 6-46 (72)
157 3mpx_A FYVE, rhogef and PH dom 58.8 2 6.9E-05 35.6 0.0 49 95-143 374-430 (434)
158 1x4k_A Skeletal muscle LIM-pro 58.3 5.5 0.00019 24.0 2.0 41 97-146 6-46 (72)
159 1x68_A FHL5 protein; four-and- 57.6 4.8 0.00016 24.8 1.7 40 97-145 6-47 (76)
160 2cor_A Pinch protein; LIM doma 55.9 4.9 0.00017 25.1 1.5 40 96-146 15-54 (79)
161 1a7i_A QCRP2 (LIM1); LIM domai 55.3 2.9 9.9E-05 26.1 0.3 40 97-146 8-47 (81)
162 2rsd_A E3 SUMO-protein ligase 55.0 0.83 2.8E-05 28.3 -2.3 43 97-141 11-64 (68)
163 3kv5_D JMJC domain-containing 54.8 2.7 9.2E-05 36.1 0.1 47 96-143 37-89 (488)
164 1m3v_A FLIN4, fusion of the LI 54.4 14 0.00048 24.9 3.8 51 97-148 33-84 (122)
165 2cuq_A Four and A half LIM dom 54.2 6 0.00021 24.4 1.7 38 97-145 16-53 (80)
166 1g47_A Pinch protein; LIM doma 53.7 6.6 0.00023 24.0 1.9 42 96-146 11-52 (77)
167 1v6g_A Actin binding LIM prote 53.3 5.3 0.00018 24.8 1.4 39 97-146 16-54 (81)
168 2jne_A Hypothetical protein YF 52.9 4.8 0.00016 26.9 1.1 41 96-144 32-72 (101)
169 1wig_A KIAA1808 protein; LIM d 52.7 5.4 0.00018 24.4 1.3 37 97-144 6-42 (73)
170 3kqi_A GRC5, PHD finger protei 50.2 4 0.00014 25.5 0.4 45 99-143 12-62 (75)
171 2dlo_A Thyroid receptor-intera 50.1 6 0.0002 24.6 1.2 40 96-146 15-54 (81)
172 2l3k_A Rhombotin-2, linker, LI 49.3 5.8 0.0002 27.0 1.1 34 96-130 36-69 (123)
173 2d8y_A Eplin protein; LIM doma 49.0 8.4 0.00029 24.5 1.8 41 96-146 15-55 (91)
174 1x3h_A Leupaxin; paxillin fami 48.9 6.6 0.00023 24.2 1.3 39 97-146 16-54 (80)
175 3f6q_B LIM and senescent cell 48.8 6.2 0.00021 23.6 1.1 42 96-146 11-52 (72)
176 1zfo_A LAsp-1; LIM domain, zin 48.7 5.9 0.0002 20.3 0.8 27 97-125 4-30 (31)
177 3o7a_A PHD finger protein 13 v 48.1 2.9 9.9E-05 24.2 -0.5 40 101-141 8-51 (52)
178 1x6a_A LIMK-2, LIM domain kina 46.4 6.7 0.00023 24.3 1.0 38 97-145 16-53 (81)
179 1wd2_A Ariadne-1 protein homol 45.5 2.7 9.2E-05 25.4 -1.0 34 97-130 7-45 (60)
180 2zet_C Melanophilin; complex, 45.4 9.4 0.00032 27.5 1.7 47 95-142 67-117 (153)
181 2gmg_A Hypothetical protein PF 44.8 3.5 0.00012 27.9 -0.6 24 116-144 72-95 (105)
182 2xjy_A Rhombotin-2; oncoprotei 44.3 20 0.00069 24.2 3.3 50 96-145 29-78 (131)
183 3a1b_A DNA (cytosine-5)-methyl 43.0 17 0.00059 26.3 2.9 31 96-130 79-112 (159)
184 2jvx_A NF-kappa-B essential mo 42.5 6.1 0.00021 20.1 0.3 12 134-145 4-15 (28)
185 2egq_A FHL1 protein; LIM domai 42.2 9.5 0.00032 23.3 1.2 41 97-146 16-59 (77)
186 3c6w_A P28ING5, inhibitor of g 41.5 3.2 0.00011 24.9 -1.1 42 95-141 8-57 (59)
187 2l4z_A DNA endonuclease RBBP8, 41.0 7.9 0.00027 26.5 0.7 39 96-144 61-99 (123)
188 2cup_A Skeletal muscle LIM-pro 40.4 13 0.00046 23.8 1.8 46 96-145 33-78 (101)
189 2vnf_A ING 4, P29ING4, inhibit 39.5 3.5 0.00012 24.8 -1.2 42 95-141 9-58 (60)
190 3mjh_B Early endosome antigen 38.9 8.5 0.00029 20.5 0.5 14 96-109 5-18 (34)
191 2g6q_A Inhibitor of growth pro 38.0 3.9 0.00013 24.8 -1.1 42 95-141 10-59 (62)
192 1b8t_A Protein (CRP1); LIM dom 35.8 16 0.00056 26.6 1.9 40 96-145 115-154 (192)
193 2jrp_A Putative cytoplasmic pr 35.7 16 0.00054 23.5 1.5 13 97-109 3-15 (81)
194 2ehe_A Four and A half LIM dom 35.6 15 0.00052 22.6 1.4 41 97-146 16-56 (82)
195 3kv4_A PHD finger protein 8; e 35.2 6.7 0.00023 33.3 -0.5 47 98-144 6-58 (447)
196 2xqn_T Testin, TESS; metal-bin 34.6 21 0.00072 23.9 2.1 47 96-146 30-76 (126)
197 2pv0_B DNA (cytosine-5)-methyl 33.9 31 0.0011 28.6 3.4 42 96-141 93-147 (386)
198 2jmo_A Parkin; IBR, E3 ligase, 33.3 2.4 8.3E-05 27.0 -2.8 14 116-129 55-68 (80)
199 2ct7_A Ring finger protein 31; 32.0 3.5 0.00012 26.5 -2.2 43 99-141 28-75 (86)
200 2kpi_A Uncharacterized protein 31.7 22 0.00076 20.9 1.6 14 95-108 9-22 (56)
201 2das_A Zinc finger MYM-type pr 31.2 41 0.0014 20.2 2.7 34 96-129 20-55 (62)
202 2iyb_E Testin, TESS, TES; LIM 31.2 14 0.00048 21.8 0.7 40 98-146 4-45 (65)
203 2lq6_A Bromodomain-containing 30.7 11 0.00038 24.3 0.1 32 96-129 17-51 (87)
204 3vhs_A ATPase wrnip1; zinc fin 30.1 13 0.00044 18.4 0.3 11 135-145 8-18 (29)
205 1j2o_A FLIN2, fusion of rhombo 28.9 28 0.00096 23.0 1.9 37 95-132 29-66 (114)
206 1rut_X Flinc4, fusion protein 28.4 27 0.00091 25.4 1.9 38 98-144 71-108 (188)
207 1x4i_A Inhibitor of growth pro 26.8 8.2 0.00028 23.9 -1.0 26 119-144 30-57 (70)
208 2jtn_A LIM domain-binding prot 24.0 39 0.0013 24.3 2.1 46 96-146 87-132 (182)
209 2pk7_A Uncharacterized protein 23.6 16 0.00055 22.6 -0.1 18 129-146 4-21 (69)
210 1r79_A Diacylglycerol kinase, 21.8 81 0.0028 20.1 3.0 40 96-138 38-80 (84)
211 2fiy_A Protein FDHE homolog; F 21.0 7.9 0.00027 31.1 -2.4 44 94-142 180-231 (309)
212 2jny_A Uncharacterized BCR; st 20.3 16 0.00056 22.4 -0.6 19 128-146 5-23 (67)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.73 E-value=3.7e-18 Score=116.26 Aligned_cols=77 Identities=31% Similarity=0.870 Sum_probs=67.0
Q ss_pred CCCCCCCCHHHHhcCCcccccccc--cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 69 GSGPPPLSTDKIKQIPVAHITKAQ--IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
....++++++.+..++...+.... ..++..|+||++.|..++.++.++|+|.||..||..|++.+.+||+||+.+..
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 455678999999999988876543 34667899999999988888999999999999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3e-17 Score=107.55 Aligned_cols=68 Identities=31% Similarity=0.737 Sum_probs=55.5
Q ss_pred HHhcCCcccccccc-cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 79 KIKQIPVAHITKAQ-IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 79 ~~~~l~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
.+..++...+.... ..+...|+||++.+..++.++.++|+|.||..||.+|++.+.+||+||+.+...
T Consensus 5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 34556666555432 345678999999999888889999999999999999999999999999988653
No 3
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.63 E-value=2.8e-16 Score=103.56 Aligned_cols=59 Identities=44% Similarity=1.143 Sum_probs=51.7
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCcccC
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESL 151 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~ 151 (176)
......|+||++.|..+..++.++|+|.||..||.+|++.+.+||+||+.+........
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 34567799999999988888889999999999999999988999999999987765544
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.4e-16 Score=102.15 Aligned_cols=55 Identities=27% Similarity=0.784 Sum_probs=48.8
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
..+..|+||++.+..+..+..++|+|.||..||.+|++.+.+||+||+++.....
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 4567799999999988888889999999999999999999999999999865433
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=4.6e-16 Score=100.17 Aligned_cols=54 Identities=35% Similarity=0.960 Sum_probs=48.3
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 147 (176)
.....|+||++.+..++.++.++|+|.||..||..|++.+.+||+||..+....
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 456679999999988888899999999999999999999999999999987653
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.60 E-value=3.8e-16 Score=96.09 Aligned_cols=51 Identities=41% Similarity=1.003 Sum_probs=46.1
Q ss_pred CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
+++..|+||++.+..++.+..++ |+|.||..|+.+|++.+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45567999999999888888898 9999999999999999999999999874
No 7
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=93.92 Aligned_cols=56 Identities=21% Similarity=0.493 Sum_probs=46.9
Q ss_pred cCCCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCccccccccCCCcccC
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESL 151 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~ 151 (176)
.++...|+||++.+.++ +.+ +|+|.||..||..|++.+..||+||+.+...+....
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred cCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 34567799999999864 555 899999999999999988999999999987655543
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.50 E-value=8.4e-15 Score=94.48 Aligned_cols=55 Identities=20% Similarity=0.644 Sum_probs=46.5
Q ss_pred CCCccCccccccccCC----CceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 94 DSNLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
+++..|+||++.+... ...+.++|||.||..||.+|++.+.+||+||+.+...+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 4567799999998653 455778999999999999999999999999999876543
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.50 E-value=1.1e-14 Score=89.47 Aligned_cols=50 Identities=28% Similarity=0.685 Sum_probs=43.0
Q ss_pred CCccCccccccccCC-CceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 95 SNLQCSVCWEQFTLD-EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~-~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
....|+||++.+... +.++.++|+|.||..||.+|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 356699999998654 35677899999999999999998899999999874
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=93.32 Aligned_cols=52 Identities=21% Similarity=0.689 Sum_probs=44.4
Q ss_pred CCCccCccccccccCC----CceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 94 DSNLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
.+...|+||++.+... ..++.++|+|.||..||..|++.+.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4567799999998753 345778999999999999999999999999998854
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=7.4e-15 Score=95.11 Aligned_cols=52 Identities=23% Similarity=0.565 Sum_probs=44.9
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
.+...|+||++.+... +.++|+|.||..||..|++.+.+||+||..+.....
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 4566799999998765 778999999999999999988999999999876543
No 12
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=6.9e-15 Score=97.88 Aligned_cols=51 Identities=25% Similarity=0.716 Sum_probs=41.1
Q ss_pred CccCccccccccC-----------CCceEEec-CCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 96 NLQCSVCWEQFTL-----------DEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~~-----------~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
+..|+||++.|.. ++.++.++ |+|.||..||.+|++.+.+||+||+++..+
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 4457777777743 45566666 999999999999999999999999998654
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.47 E-value=1.8e-14 Score=90.88 Aligned_cols=53 Identities=21% Similarity=0.646 Sum_probs=45.1
Q ss_pred CccCccccccccCC----CceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 96 NLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 96 ~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
...|+||++.+..+ ..+..++|||.||..|+.+|++.+.+||+||+++...+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 46799999998753 445778999999999999999999999999999876543
No 14
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.46 E-value=4.4e-14 Score=99.37 Aligned_cols=51 Identities=22% Similarity=0.563 Sum_probs=41.5
Q ss_pred CccCccccccccCCC---------------ceEEecCCCcCCHHhHHHHH-----hcCCCCccccccccCC
Q psy5318 96 NLQCSVCWEQFTLDE---------------AVRKLPCDHFYHTPCIEPWL-----QLHGTCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~---------------~~~~lpC~H~Fh~~Ci~~wl-----~~~~~CP~CR~~l~~~ 146 (176)
+..|+||++.|..+. .++.++|+|.||..||..|+ ..+.+||+||..+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 457999999986542 33467899999999999999 4566899999988655
No 15
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.5e-14 Score=91.46 Aligned_cols=50 Identities=30% Similarity=0.806 Sum_probs=43.9
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 147 (176)
.+...|+||++.+.. +.++|+|.||..||.+|++.+.+||+||+.+...+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 456779999999875 77899999999999999998999999999987554
No 16
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.45 E-value=4.1e-14 Score=98.87 Aligned_cols=52 Identities=23% Similarity=0.522 Sum_probs=43.5
Q ss_pred CCccCccccccccCCC---------------ceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 95 SNLQCSVCWEQFTLDE---------------AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~---------------~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
++..|+||++.|...- .++.++|+|.||..||.+||+.+.+||+||+++..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 4667999999987541 356678999999999999999999999999987543
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=90.45 Aligned_cols=52 Identities=33% Similarity=0.602 Sum_probs=43.4
Q ss_pred cCCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcC--CCCccccccccCCC
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLH--GTCPICRQTLHSES 147 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~--~~CP~CR~~l~~~~ 147 (176)
..+...|+||++.+..+ +.++ |+|.||..||..|++.+ ..||+||+++...+
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 34567799999999866 7799 99999999999999765 58999999765443
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=92.11 Aligned_cols=55 Identities=29% Similarity=0.646 Sum_probs=46.4
Q ss_pred cCCCccCccccccccCCCc-eEEecCCCcCCHHhHHHHHhcC---CCCccccccccCCC
Q psy5318 93 IDSNLQCSVCWEQFTLDEA-VRKLPCDHFYHTPCIEPWLQLH---GTCPICRQTLHSES 147 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~-~~~lpC~H~Fh~~Ci~~wl~~~---~~CP~CR~~l~~~~ 147 (176)
..+...|+||++.|...+. .+.++|||.||..|+..|++.+ ..||+||+.+...+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 4566789999999987553 6788999999999999999875 68999999886654
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.42 E-value=7.5e-14 Score=89.33 Aligned_cols=49 Identities=31% Similarity=0.766 Sum_probs=42.5
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
....|+||++.+.. .++.++|+|.||..|+..|++.+.+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 45679999999864 35778999999999999999989999999998863
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=88.24 Aligned_cols=51 Identities=16% Similarity=0.564 Sum_probs=42.9
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHh-cCCCCccccccccCCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHSES 147 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~~~ 147 (176)
.+...|+||++.+..+ +.++|||.||..||..|++ ....||+||+.+..++
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 4567799999999866 5589999999999999994 5668999999987653
No 21
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=91.61 Aligned_cols=48 Identities=21% Similarity=0.565 Sum_probs=42.8
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
.....|+||++.+..+ ++++|+|.||..||..|++...+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4567799999999765 67899999999999999998899999999985
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.4e-13 Score=89.16 Aligned_cols=52 Identities=17% Similarity=0.579 Sum_probs=43.3
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHh---cCCCCccccccccCCC
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ---LHGTCPICRQTLHSES 147 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~CR~~l~~~~ 147 (176)
..+...|+||++.+... +.++|+|.||..||..|++ ....||+||+.+..++
T Consensus 17 ~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 34567899999998754 7789999999999999996 4558999999987653
No 23
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.40 E-value=1.7e-13 Score=90.03 Aligned_cols=52 Identities=23% Similarity=0.493 Sum_probs=44.6
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-CCCCccccccccCCC
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSES 147 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~~~ 147 (176)
..+...|+||++.+.++ +.++|||.||..||..|++. +.+||+||.++...+
T Consensus 5 ~~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp CSSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred CcccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 34567899999999866 77899999999999999986 778999999987553
No 24
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.8e-13 Score=89.95 Aligned_cols=53 Identities=25% Similarity=0.702 Sum_probs=43.9
Q ss_pred CCCccCccccccccCCCceEEecCC-----CcCCHHhHHHHHhcC--CCCccccccccCCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCD-----HFYHTPCIEPWLQLH--GTCPICRQTLHSES 147 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~-----H~Fh~~Ci~~wl~~~--~~CP~CR~~l~~~~ 147 (176)
.+...|.||++++..++.+ ++||+ |.||..||.+|+..+ .+||+||..+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3456799999999876665 68996 999999999999765 48999999987654
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.38 E-value=1.5e-13 Score=100.04 Aligned_cols=49 Identities=37% Similarity=0.872 Sum_probs=43.2
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
++..|+||++.+..+ +.++|||.||..||..|+..+.+||+||+++...
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 346799999999765 7889999999999999999999999999988643
No 26
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.37 E-value=4.8e-13 Score=88.74 Aligned_cols=52 Identities=25% Similarity=0.647 Sum_probs=44.3
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc------CCCCccccccccCCC
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL------HGTCPICRQTLHSES 147 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~------~~~CP~CR~~l~~~~ 147 (176)
..+...|+||++.+..+ +.++|+|.||..|+..|+.. ...||+||..+...+
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 34567899999999766 67899999999999999977 668999999987654
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.35 E-value=7.9e-14 Score=96.24 Aligned_cols=52 Identities=27% Similarity=0.666 Sum_probs=43.7
Q ss_pred CCCccCccccccccCCCceEE-ecCCCcCCHHhHHHHHhcC-CCCccccccccCCCc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQLH-GTCPICRQTLHSESA 148 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~l~~~~~ 148 (176)
.+...|+||++.+..+ +. ++|||.||..||..|++.. ..||+||.++...+.
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l 73 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73 (100)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHh
Confidence 3456799999999754 66 8899999999999999877 699999999865443
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.1e-13 Score=88.22 Aligned_cols=52 Identities=25% Similarity=0.714 Sum_probs=44.0
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc------CCCCccccccccCCC
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL------HGTCPICRQTLHSES 147 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~------~~~CP~CR~~l~~~~ 147 (176)
..+...|+||++.+... +.++|+|.||..|+..|+.. ...||+||..+...+
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 34567799999999765 66799999999999999976 678999999987654
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.34 E-value=1.6e-13 Score=90.18 Aligned_cols=52 Identities=25% Similarity=0.588 Sum_probs=43.9
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-------CCCCccccccccCCC
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-------HGTCPICRQTLHSES 147 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-------~~~CP~CR~~l~~~~ 147 (176)
..+...|+||++.+..+ +.++|||.||..||..|++. ...||+||..+...+
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 35567899999999765 56899999999999999976 568999999987643
No 30
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.33 E-value=1.2e-13 Score=97.96 Aligned_cols=52 Identities=25% Similarity=0.564 Sum_probs=1.0
Q ss_pred CCccCccccccccCC-------------C--ceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 95 SNLQCSVCWEQFTLD-------------E--AVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~-------------~--~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
++..|+||++.|... + .+..++|+|.||..||.+||+.+.+||+||+++..+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 113 (117)
T ss_dssp CC-----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence 456799999998652 1 223357999999999999999999999999987543
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=82.46 Aligned_cols=44 Identities=20% Similarity=0.619 Sum_probs=37.7
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHh---cCCCCccc
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ---LHGTCPIC 139 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~C 139 (176)
..+...|+||++.+..+ +.++|||.||..||..|++ ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35567899999999865 7789999999999999997 45589998
No 32
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=85.74 Aligned_cols=53 Identities=23% Similarity=0.563 Sum_probs=43.3
Q ss_pred CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcC--CCCccccccccCCCccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLH--GTCPICRQTLHSESAES 150 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~--~~CP~CR~~l~~~~~~~ 150 (176)
....|.||++.+..+ ... .|+|.||..||.+||+.+ .+||+||.++..+....
T Consensus 14 ~i~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~ 69 (74)
T 2ct0_A 14 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKS 69 (74)
T ss_dssp SSCBCSSSCCBCSSS---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCC
T ss_pred CCCcCcchhhHcccC---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCC
Confidence 446699999999866 333 699999999999999877 78999999887655443
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.32 E-value=3.9e-13 Score=92.29 Aligned_cols=49 Identities=31% Similarity=0.796 Sum_probs=42.5
Q ss_pred CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
+...|+||++.+..+ +.+ +|||.||..||..|+..+.+||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 456799999999764 566 8999999999999999889999999988753
No 34
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=88.68 Aligned_cols=49 Identities=33% Similarity=0.624 Sum_probs=42.2
Q ss_pred cCCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcC--CCCcccccccc
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLH--GTCPICRQTLH 144 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~--~~CP~CR~~l~ 144 (176)
..+...|+||++.|..+ +.++ |||.||..||..|+... ..||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45678899999999876 7899 99999999999999654 48999999873
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.30 E-value=6.9e-13 Score=92.52 Aligned_cols=51 Identities=27% Similarity=0.683 Sum_probs=43.9
Q ss_pred cCCCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..+...|+||++.+..+ +.+ +|||.||..||..|+..+..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 34567799999999754 565 9999999999999999889999999998754
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.29 E-value=1.2e-12 Score=93.67 Aligned_cols=56 Identities=20% Similarity=0.634 Sum_probs=47.2
Q ss_pred CCccCccccccccCC----CceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCccc
Q psy5318 95 SNLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAES 150 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~ 150 (176)
+...|+||++.+..+ ..++.++|||.||..||.+|++.+.+||+||+.+.......
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccc
Confidence 456799999998754 45578899999999999999999999999999997665433
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.27 E-value=2.5e-12 Score=81.58 Aligned_cols=53 Identities=19% Similarity=0.460 Sum_probs=42.1
Q ss_pred CccCccccc-cccCCCce-EEecCCCcCCHHhHHHHHhc-CCCCccccccccCCCc
Q psy5318 96 NLQCSVCWE-QFTLDEAV-RKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSESA 148 (176)
Q Consensus 96 ~~~C~IC~~-~~~~~~~~-~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~~~~ 148 (176)
+..|+||++ .+..+... +.++|||.||..||..|+.. ...||+||+.+...+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 466999999 77765433 45789999999999999754 4579999999876543
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.4e-12 Score=79.52 Aligned_cols=44 Identities=30% Similarity=0.791 Sum_probs=36.8
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHh---cCCCCccc
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ---LHGTCPIC 139 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~---~~~~CP~C 139 (176)
..+...|+||++.+..+ +.++|+|.||..||..|++ .+.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567799999999876 6689999999999999954 55689998
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.26 E-value=2.2e-12 Score=92.12 Aligned_cols=49 Identities=24% Similarity=0.546 Sum_probs=42.1
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC-CCccccccccC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHS 145 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~l~~ 145 (176)
.+...|+||++.+..+ +.++|||.||..||..|+..+. .||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3456799999999865 7789999999999999997554 89999999865
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.25 E-value=1.4e-12 Score=96.45 Aligned_cols=50 Identities=22% Similarity=0.521 Sum_probs=43.1
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC-CCccccccccCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSE 146 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~l~~~ 146 (176)
.+...|+||++.+..+ +.++|||.||..||..|+.... .||+||..+...
T Consensus 76 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3456799999999765 7799999999999999998655 899999998765
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.24 E-value=4e-12 Score=88.76 Aligned_cols=50 Identities=26% Similarity=0.674 Sum_probs=41.9
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC---CCccccccccCCCc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSESA 148 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~---~CP~CR~~l~~~~~ 148 (176)
...|+||++.+..+ +.++|||.||..||..|+..+. .||+||..+...+.
T Consensus 21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 45699999999765 5689999999999999997654 89999999876543
No 42
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.23 E-value=5.6e-12 Score=84.48 Aligned_cols=51 Identities=20% Similarity=0.127 Sum_probs=45.4
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 147 (176)
.+...|+||++.|.++ ++++|||.|++.||..|+..+.+||+||.++...+
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 4567899999999887 88999999999999999998899999999886543
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.22 E-value=1.4e-12 Score=97.53 Aligned_cols=48 Identities=31% Similarity=0.670 Sum_probs=41.0
Q ss_pred CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhc-CCCCccccccccC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQL-HGTCPICRQTLHS 145 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~ 145 (176)
+...|+||++.+..+ +.+ +|||.||..||..|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 456799999999854 555 89999999999999986 7789999999854
No 44
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.21 E-value=3.7e-12 Score=90.25 Aligned_cols=52 Identities=23% Similarity=0.614 Sum_probs=44.1
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC-CCccccccccCCC
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSES 147 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~l~~~~ 147 (176)
..+...|+||++.+..+ +.++|||.||..||..|++... +||+||..+....
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 35567899999999765 7789999999999999997665 9999999987643
No 45
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.21 E-value=6.8e-12 Score=86.62 Aligned_cols=52 Identities=21% Similarity=0.142 Sum_probs=46.0
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
.+...|+||++.|.++ ++++|||.|++.||..|+..+.+||+||.++...+.
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L 78 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESML 78 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSS
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhc
Confidence 4567899999999887 889999999999999999988899999999876543
No 46
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.19 E-value=9.9e-12 Score=85.50 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=46.0
Q ss_pred CCCccCccccccccCCCceEEecCC-CcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCD-HFYHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~-H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
.+...|+||++.|.++ ++++|| |.|++.||..|+..+.+||+||.++...+.
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L 72 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI 72 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhc
Confidence 4567899999999887 889999 999999999999888899999999876543
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.18 E-value=7.6e-12 Score=89.42 Aligned_cols=54 Identities=20% Similarity=0.669 Sum_probs=45.5
Q ss_pred CCCccCccccccccCC----CceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318 94 DSNLQCSVCWEQFTLD----EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~----~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 147 (176)
++...|+||++.+... ...+.++|||.||..||.+|++.+.+||+||..+...+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 4567799999998653 34477889999999999999999999999999987654
No 48
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.17 E-value=8.7e-12 Score=91.19 Aligned_cols=52 Identities=21% Similarity=0.475 Sum_probs=43.8
Q ss_pred ccCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCC-CCccccccccCC
Q psy5318 92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSE 146 (176)
Q Consensus 92 ~~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~-~CP~CR~~l~~~ 146 (176)
..++...|+||++.+..+ +.++|||.||..||..|++... +||+||.++..+
T Consensus 27 ~l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE 79 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred cCCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence 345677899999999876 7789999999999999997665 899999986433
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.16 E-value=5.2e-12 Score=88.90 Aligned_cols=48 Identities=33% Similarity=0.780 Sum_probs=41.6
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-CCCCccccccccC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHS 145 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~ 145 (176)
++..|+||++.+..+ +.++|||.||..||..|+.. ...||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 356799999999866 77899999999999999966 6689999999864
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.15 E-value=1.5e-11 Score=86.68 Aligned_cols=50 Identities=22% Similarity=0.587 Sum_probs=42.9
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc-CCCCccccccccCCC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLHSES 147 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~-~~~CP~CR~~l~~~~ 147 (176)
+...|+||++.+..+ +.++|||.||..||..|+.. ..+||+||..+...+
T Consensus 22 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 356799999999765 66899999999999999986 679999999987654
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.14 E-value=6.2e-11 Score=78.16 Aligned_cols=55 Identities=22% Similarity=0.559 Sum_probs=42.1
Q ss_pred cCCCccCccccccccCCCceEEe--cCCCcCCHHhHHHHHh-cCCCCccccccccCCCc
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPWLQ-LHGTCPICRQTLHSESA 148 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~~~~ 148 (176)
.+++..|+||++.+...+. ..+ +|||.||..|+..++. ....||.||+.+.....
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 3456789999998864332 234 4999999999999874 45689999999876544
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=1.1e-11 Score=76.53 Aligned_cols=47 Identities=28% Similarity=0.552 Sum_probs=39.6
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
.+...|+||++.+..+ +.++|+|.||..|+..| ...||+||+.+...
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 4567799999999866 77899999999999773 56899999988654
No 53
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.11 E-value=2.3e-11 Score=77.19 Aligned_cols=47 Identities=19% Similarity=0.454 Sum_probs=39.8
Q ss_pred CCccCccccccccCCCceEEe--cCCCc-CCHHhHHHHHhcCCCCcccccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL--PCDHF-YHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l--pC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
++..|.||++...+. ..+ ||||. ||..|+..|.+.+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 445699999987644 555 99999 899999999988889999999875
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=1.8e-11 Score=86.46 Aligned_cols=47 Identities=23% Similarity=0.606 Sum_probs=40.4
Q ss_pred CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
+...|+||++.|..+ +.+ +|||.||..||..|+. ..||+||..+...
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 456799999999866 667 8999999999999987 7899999998543
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.07 E-value=4.8e-11 Score=75.46 Aligned_cols=47 Identities=19% Similarity=0.443 Sum_probs=39.3
Q ss_pred CCccCccccccccCCCceEEe--cCCCc-CCHHhHHHHHhcCCCCcccccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL--PCDHF-YHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l--pC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
....|.||++...+. ..+ ||||. ||..|+..|.+....||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 345699999986543 445 99998 999999999988889999999885
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.07 E-value=7.1e-11 Score=99.07 Aligned_cols=50 Identities=26% Similarity=0.642 Sum_probs=43.1
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHh-cCCCCccccccccCCCc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHSESA 148 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~~~~ 148 (176)
...|+||++.+... +.+||||.||..|+..|+. ...+||+||.++.....
T Consensus 332 ~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 46799999998654 7899999999999999998 67899999999876543
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.06 E-value=1.5e-11 Score=80.15 Aligned_cols=44 Identities=23% Similarity=0.619 Sum_probs=37.7
Q ss_pred CCccCccccccccCCCceEEecCCCc-CCHHhHHHHHhcCCCCccccccccC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
++..|+||++.+.+. +.+||||. ||..|+..| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 345699999988654 77899999 999999988 789999998864
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.99 E-value=1.4e-10 Score=92.51 Aligned_cols=51 Identities=24% Similarity=0.218 Sum_probs=43.6
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC-CCCccccccccCCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH-GTCPICRQTLHSES 147 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~l~~~~ 147 (176)
.....|+||++.+.++ ++++|||.||..||..|+..+ .+||+||.++...+
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 4567899999999877 889999999999999999764 45999999986543
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.3e-10 Score=79.19 Aligned_cols=51 Identities=24% Similarity=0.520 Sum_probs=41.5
Q ss_pred CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcC------CCCcc--cccc-ccCCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLH------GTCPI--CRQT-LHSES 147 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~------~~CP~--CR~~-l~~~~ 147 (176)
.+...|+||++.|.++ ++++ |||.|+..||..|+..+ .+||+ |+.. +...+
T Consensus 5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~ 65 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSD 65 (94)
T ss_dssp SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGG
T ss_pred CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhh
Confidence 3467799999999876 7786 99999999999999754 48999 9876 55443
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.97 E-value=1.7e-10 Score=86.49 Aligned_cols=51 Identities=22% Similarity=0.573 Sum_probs=43.5
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC-CCCccccccccCC
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH-GTCPICRQTLHSE 146 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~l~~~ 146 (176)
..+...|+||++.+..+ +.++|||.||..||..|++.. .+||+||..+...
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 45667899999999866 678999999999999999754 4999999998654
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.89 E-value=6.3e-10 Score=84.26 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=44.6
Q ss_pred cCCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC-CCCccccccccCCCc
Q psy5318 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH-GTCPICRQTLHSESA 148 (176)
Q Consensus 93 ~~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~-~~CP~CR~~l~~~~~ 148 (176)
..+...|+||++.|.++ ++++|||.|+..||..|+..+ .+||+||.++...+.
T Consensus 103 ip~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L 156 (179)
T 2f42_A 103 IPDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL 156 (179)
T ss_dssp CCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred CcHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC
Confidence 34567899999999877 888999999999999999764 479999999865543
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.83 E-value=7.5e-10 Score=91.09 Aligned_cols=52 Identities=27% Similarity=0.745 Sum_probs=39.5
Q ss_pred CCCccCccccccccCCCce-----EEecCCCcCCHHhHHHHHhcC-----------CCCccccccccC
Q psy5318 94 DSNLQCSVCWEQFTLDEAV-----RKLPCDHFYHTPCIEPWLQLH-----------GTCPICRQTLHS 145 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~-----~~lpC~H~Fh~~Ci~~wl~~~-----------~~CP~CR~~l~~ 145 (176)
+...+|+||++.+..+..+ ....|+|.||..|+.+||+.. ++||+||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 4566799999998763221 123599999999999999642 469999998863
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.3e-09 Score=70.97 Aligned_cols=43 Identities=23% Similarity=0.637 Sum_probs=35.8
Q ss_pred CccCccccccccCCCceEEecCCCc-CCHHhHHHHHhcCCCCccccccccC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
...|+||++.+... +.+||||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 34599999998655 67899999 99999964 4789999998865
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=4.2e-09 Score=67.42 Aligned_cols=46 Identities=28% Similarity=0.641 Sum_probs=37.8
Q ss_pred CCCccCccccccccCCCceEEecCCCc-CCHHhHHHHHhcCCCCccccccccCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
.+...|.||++...+. +.+||+|. ||..|+.. ...||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence 3456799999987654 88899999 99999984 47899999988654
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.77 E-value=4e-09 Score=65.95 Aligned_cols=48 Identities=25% Similarity=0.674 Sum_probs=36.9
Q ss_pred CCCccCccccccccCCCceEEecCC--C---cCCHHhHHHHHhc--CCCCcccccccc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCD--H---FYHTPCIEPWLQL--HGTCPICRQTLH 144 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~--H---~Fh~~Ci~~wl~~--~~~CP~CR~~l~ 144 (176)
++...|.||+++.. +. .++||. + .||..|+.+|+.. +.+||+||.++.
T Consensus 4 ~~~~~CrIC~~~~~--~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 34567999999743 33 358854 5 9999999999964 568999999875
No 66
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.75 E-value=3e-09 Score=66.72 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=45.2
Q ss_pred ccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCccccccccCCCcccC
Q psy5318 97 LQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESL 151 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~ 151 (176)
..|+||++.+.++ +++ +|||+|.+.||.+|++.+.+||+.+.++..++....
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEEC
Confidence 4699999999866 777 799999999999999888899999999987765544
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.72 E-value=4.4e-09 Score=71.27 Aligned_cols=51 Identities=20% Similarity=0.669 Sum_probs=39.5
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhc--------CCCCcc--cccc--ccC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL--------HGTCPI--CRQT--LHS 145 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~--------~~~CP~--CR~~--l~~ 145 (176)
+..+|+||++.+..+......+|+|.||..|+..+++. ...||. |+.. +..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 35679999999876644444579999999999999853 137999 9988 544
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.71 E-value=3.3e-09 Score=69.90 Aligned_cols=44 Identities=27% Similarity=0.671 Sum_probs=36.7
Q ss_pred CccCccccccccCCCceEEecCCCc-CCHHhHHHHHhcCCCCccccccccCC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
...|.||++.+.+. +.+||||. ||..|+..| ..||+||..+...
T Consensus 18 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 34699999987654 78899999 999999876 3899999988654
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.63 E-value=8.9e-09 Score=81.94 Aligned_cols=53 Identities=21% Similarity=0.493 Sum_probs=42.4
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcC--CCCcc--ccccccCCCc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH--GTCPI--CRQTLHSESA 148 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~--~~CP~--CR~~l~~~~~ 148 (176)
.....|+||++.|..+ |+...|||.||+.||..|+..+ .+||+ ||+.+...+.
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred ceeeECcCccCcccCC--eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 4567799999999865 3334899999999999999764 37999 9998865543
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.60 E-value=5.5e-09 Score=86.70 Aligned_cols=45 Identities=27% Similarity=0.688 Sum_probs=38.7
Q ss_pred CCCccCccccccccCCCceEEecCCCc-CCHHhHHHHHhcCCCCccccccccC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHF-YHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~-Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
.+...|+||++.+... +.+||||. ||..|+..| ..||+||..+..
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 4567899999998755 77899999 999999987 689999998854
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.35 E-value=2.4e-07 Score=63.04 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=38.4
Q ss_pred cCccccccccCCCceEEecCCCcCCHHhHHHHHh-cCCCCccccccccCCC
Q psy5318 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ-LHGTCPICRQTLHSES 147 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~-~~~~CP~CR~~l~~~~ 147 (176)
.|.+|--.+. ...+.+||+|+||..|+..|.+ ..++||.|+.++..-+
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 4788866655 4568889999999999999984 5679999999886543
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.27 E-value=1e-06 Score=69.52 Aligned_cols=52 Identities=21% Similarity=0.569 Sum_probs=42.9
Q ss_pred CCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC--CCccccccccCCCcc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG--TCPICRQTLHSESAE 149 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~--~CP~CR~~l~~~~~~ 149 (176)
....|.||.+.+..+ ...+ |+|.||..|+..|++.+. .||.|+..++.+.+.
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence 356799999998876 5565 999999999999997655 899999988766443
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=97.51 E-value=7e-05 Score=50.12 Aligned_cols=56 Identities=23% Similarity=0.562 Sum_probs=44.1
Q ss_pred CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCCCCccccccccCCCcccCCCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPA 154 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~~~~~~~ 154 (176)
-....|..||-..+ ..+. ..|++|..|+...|.....||+|.++|+.+-..+..+.
T Consensus 26 ~G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~PS 82 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAPT 82 (99)
T ss_dssp SCCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTSCC
T ss_pred cCcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecCcCCC
Confidence 35567999998765 2344 56999999999999999999999999988765554443
No 74
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.31 E-value=0.003 Score=41.35 Aligned_cols=34 Identities=24% Similarity=0.685 Sum_probs=24.2
Q ss_pred ccCCCccCccccccccCCCceEEec---CCCcCCHHhHHHH
Q psy5318 92 QIDSNLQCSVCWEQFTLDEAVRKLP---CDHFYHTPCIEPW 129 (176)
Q Consensus 92 ~~~~~~~C~IC~~~~~~~~~~~~lp---C~H~Fh~~Ci~~w 129 (176)
....+..|.||- .+... ..+| |+.+||..|+.+.
T Consensus 11 ~~~~D~~C~VC~-~~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 11 PVVNDEMCDVCE-VWTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCSCCCTTTC-CCCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCCcccCccc-ccccc---ceeccccccccccHhhcccc
Confidence 344677899994 34333 2344 8999999999996
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.58 E-value=0.006 Score=40.96 Aligned_cols=34 Identities=18% Similarity=0.458 Sum_probs=25.1
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHH
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPW 129 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~w 129 (176)
+..|.||.+.+.......-+.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4679999986433322233789999999999983
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.14 E-value=0.014 Score=36.57 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=31.6
Q ss_pred CCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCcccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQT 142 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~~ 142 (176)
....|.||.+. ..+..-. |...||..|+.+.|.... .||.|+..
T Consensus 11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34569999753 2334444 999999999998875543 69999754
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.69 E-value=0.017 Score=35.60 Aligned_cols=49 Identities=27% Similarity=0.565 Sum_probs=33.9
Q ss_pred CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHh-----cCCCCcccccc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQ-----LHGTCPICRQT 142 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~-----~~~~CP~CR~~ 142 (176)
++...|+||...+......+.-. |...||..|+.--.. ..-.||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45567999998876544455444 999999999854321 23479999764
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=92.98 E-value=0.05 Score=33.29 Aligned_cols=45 Identities=27% Similarity=0.677 Sum_probs=30.8
Q ss_pred CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCcccccc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQT 142 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~~ 142 (176)
..+..|.||... ..+..-. |...||..|+.+-+.... .||.|+..
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 445679999863 2333333 999999999987553322 69999753
No 79
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=91.55 E-value=0.035 Score=36.66 Aligned_cols=53 Identities=21% Similarity=0.516 Sum_probs=35.1
Q ss_pred CCccCccccccccC-CCceEEec-CCCcCCHHhHHHHHhc--------CCCCccccccccCCC
Q psy5318 95 SNLQCSVCWEQFTL-DEAVRKLP-CDHFYHTPCIEPWLQL--------HGTCPICRQTLHSES 147 (176)
Q Consensus 95 ~~~~C~IC~~~~~~-~~~~~~lp-C~H~Fh~~Ci~~wl~~--------~~~CP~CR~~l~~~~ 147 (176)
.+..|.||...-.. ...+.... |...||..|+.+-|.. .=.|+.|+.......
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhc
Confidence 35569999876332 22334444 9999999999875532 126999988765443
No 80
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.47 E-value=0.063 Score=35.70 Aligned_cols=50 Identities=26% Similarity=0.409 Sum_probs=33.3
Q ss_pred CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCcccccccc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQTLH 144 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~~l~ 144 (176)
.+...|.||...-.. +.++... |...||..|+.+-|.... .||.|+..-.
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~ 68 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAEC 68 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCccc
Confidence 455679999875432 2334444 999999999975443322 5999987543
No 81
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=91.36 E-value=0.12 Score=47.86 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=44.9
Q ss_pred CCCccCccccccccCCCceEEecCC-CcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCD-HFYHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~-H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
.+...|+|-++.+.++ +++|.| +.|-+.+|.+|+..+.+||.=|.++...+.
T Consensus 889 P~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDV 941 (968)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred cHHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccc
Confidence 3466799999999887 889987 589999999999989999999999876543
No 82
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=91.35 E-value=0.064 Score=40.27 Aligned_cols=47 Identities=23% Similarity=0.505 Sum_probs=34.0
Q ss_pred ccCccccccccCCCc---eEEec-CCCcCCHHhHHH------HHh-----cCCCCccccccc
Q psy5318 97 LQCSVCWEQFTLDEA---VRKLP-CDHFYHTPCIEP------WLQ-----LHGTCPICRQTL 143 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~---~~~lp-C~H~Fh~~Ci~~------wl~-----~~~~CP~CR~~l 143 (176)
..|+||...+..++. .+... |...||..|+.- -+. ..-.||.|+..-
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 459999998887653 55555 999999999832 111 145899998754
No 83
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.59 E-value=0.33 Score=31.02 Aligned_cols=47 Identities=17% Similarity=0.545 Sum_probs=31.1
Q ss_pred CccCccccccccCCCceEEec-CCCcCCHHhHHHHH---h--cCCCCccccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWL---Q--LHGTCPICRQTL 143 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl---~--~~~~CP~CR~~l 143 (176)
...| ||...+......+... |...||..|+.--. . ..-.||.|+...
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3446 8988775444444444 99999999994221 1 334799998764
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=90.59 E-value=0.094 Score=30.65 Aligned_cols=43 Identities=26% Similarity=0.629 Sum_probs=28.1
Q ss_pred cCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCC----CCccccc
Q psy5318 98 QCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQ 141 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~ 141 (176)
.|.||...-.. +.+..- .|...||..|+.+=+.... .||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 48889765322 233333 3999999999976443322 5999965
No 85
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.51 E-value=0.062 Score=34.10 Aligned_cols=50 Identities=22% Similarity=0.522 Sum_probs=33.4
Q ss_pred CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhc----CCCCcccccccc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQL----HGTCPICRQTLH 144 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~----~~~CP~CR~~l~ 144 (176)
.+...|.||..... ++..+... |...||..|+..-... .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34456999977643 33344444 9999999999754432 226999987664
No 86
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=88.31 E-value=0.18 Score=33.21 Aligned_cols=53 Identities=21% Similarity=0.389 Sum_probs=33.5
Q ss_pred CCCccCcccccccc-CCCceEEec-CCCcCCHHhHHHHHhcCC--CCccccccccCC
Q psy5318 94 DSNLQCSVCWEQFT-LDEAVRKLP-CDHFYHTPCIEPWLQLHG--TCPICRQTLHSE 146 (176)
Q Consensus 94 ~~~~~C~IC~~~~~-~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~--~CP~CR~~l~~~ 146 (176)
+.+..|.||...-. ..+.++... |.-.||..|+..-+.... .||.|.......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchh
Confidence 45677999987532 222333333 999999999975332222 699997765433
No 87
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.25 E-value=0.053 Score=32.54 Aligned_cols=44 Identities=30% Similarity=0.711 Sum_probs=29.5
Q ss_pred CCCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCC----CCccccc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQ 141 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~ 141 (176)
..+..|.||... + .++.- .|...||..|+.+-+.... .||.|+.
T Consensus 7 ~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345669999874 2 33333 3999999999986554322 5888854
No 88
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=88.23 E-value=0.09 Score=39.96 Aligned_cols=46 Identities=24% Similarity=0.512 Sum_probs=31.5
Q ss_pred CCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCcccccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQTLH 144 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~~l~ 144 (176)
.+..|.+|... + .+.... |...||..|+.+.+.... .||.|+..-.
T Consensus 6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 45569999753 2 233333 999999999987664332 6999987543
No 89
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=87.85 E-value=0.35 Score=35.85 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=31.4
Q ss_pred CccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCcccccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQTLH 144 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~~l~ 144 (176)
+..|.+|... + .+.... |...||..|+.+-+.... .||.|+..-.
T Consensus 4 ~~~C~~C~~~---g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 4 EDWCAVCQNG---G-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSSCTTTCCC---S-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCccccCCCC---C-eeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 4569999754 2 233343 999999999977664332 6999987543
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=87.62 E-value=0.086 Score=32.22 Aligned_cols=44 Identities=27% Similarity=0.542 Sum_probs=29.3
Q ss_pred CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCC----CCcccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQT 142 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~~ 142 (176)
.+..|.||.+. + .+..- .|...||..|+.+-+.... .||.|+..
T Consensus 8 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45669999763 2 22222 3999999999986544322 59999764
No 91
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.56 E-value=0.28 Score=32.34 Aligned_cols=45 Identities=29% Similarity=0.602 Sum_probs=31.4
Q ss_pred CCCccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCcccccc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQT 142 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~~ 142 (176)
..+..|.+|... + .+.... |...||..|+.+=+.... .||.|+..
T Consensus 23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345679999864 2 233333 889999999987664433 59999764
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=87.06 E-value=0.14 Score=35.04 Aligned_cols=44 Identities=32% Similarity=0.628 Sum_probs=29.0
Q ss_pred cCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCccccc
Q psy5318 98 QCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQ 141 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~ 141 (176)
.|.||...-.+.+.+..-. |...||..|+.+-|.... .||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 5888876433333344444 999999999976554322 6999975
No 93
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=86.89 E-value=0.088 Score=32.48 Aligned_cols=50 Identities=22% Similarity=0.492 Sum_probs=32.5
Q ss_pred CCCccCccccccccC-CCceEEec-CCCcCCHHhHHHHHhc-------CCCCccccccc
Q psy5318 94 DSNLQCSVCWEQFTL-DEAVRKLP-CDHFYHTPCIEPWLQL-------HGTCPICRQTL 143 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~-~~~~~~lp-C~H~Fh~~Ci~~wl~~-------~~~CP~CR~~l 143 (176)
..+..|.||...... ...+..-. |...||..|+.+-+.. .=.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 345679999876432 23334334 9999999999864421 12699997654
No 94
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=86.89 E-value=0.12 Score=35.17 Aligned_cols=48 Identities=21% Similarity=0.520 Sum_probs=33.4
Q ss_pred ccCccccccccCCCceEEe--cCCCcCCHHhHHHH------H----hcCCCCcccccccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPW------L----QLHGTCPICRQTLH 144 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~~w------l----~~~~~CP~CR~~l~ 144 (176)
..|.||...+......+.. .|...||..|+.-- + ...-.||.|+....
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 4599999988665555555 48999999998321 1 02337999987543
No 95
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=86.42 E-value=0.21 Score=31.51 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=31.5
Q ss_pred CCCccCccccccc-cCCCceEEec-CCCcCCHHhHHHHHhcCC--CCcccccc
Q psy5318 94 DSNLQCSVCWEQF-TLDEAVRKLP-CDHFYHTPCIEPWLQLHG--TCPICRQT 142 (176)
Q Consensus 94 ~~~~~C~IC~~~~-~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~--~CP~CR~~ 142 (176)
..+..|.||.+.- ...+..+.-. |.-.||..|+..-..... .||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4566799998753 2333444444 999999999975321112 59988754
No 96
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=86.03 E-value=0.079 Score=32.18 Aligned_cols=45 Identities=29% Similarity=0.702 Sum_probs=30.9
Q ss_pred CccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCC----CCcccccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQTLH 144 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~~l~ 144 (176)
+..|.||... + .+..- .|...||..|+.+-+.... .||.|+....
T Consensus 5 ~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 5 EDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 4569999874 2 33333 3999999999986554322 5999977654
No 97
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=85.34 E-value=0.59 Score=27.36 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=27.6
Q ss_pred CccccccccCCCceEEe--cCCCcCCHHhHHHH----HhcCCCCcccc
Q psy5318 99 CSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPW----LQLHGTCPICR 140 (176)
Q Consensus 99 C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci~~w----l~~~~~CP~CR 140 (176)
|.+|...+..+...+.- .|...||..|+.-- ...+-.||.|+
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 77888877555444444 38889999998421 12455799885
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=84.31 E-value=0.23 Score=30.71 Aligned_cols=44 Identities=25% Similarity=0.594 Sum_probs=30.0
Q ss_pred CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCC----CCcccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQT 142 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~~ 142 (176)
.+..|.||.+. + .+... .|...||..|+.+-+.... .||.|...
T Consensus 7 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 45669999864 2 33333 3999999999986543322 59999754
No 99
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=84.12 E-value=0.67 Score=28.58 Aligned_cols=33 Identities=21% Similarity=0.620 Sum_probs=24.4
Q ss_pred CCCccCccccccccCCCceEEe--cCCCcCCHHhH
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKL--PCDHFYHTPCI 126 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l--pC~H~Fh~~Ci 126 (176)
+....|.+|...+..+...+.. .|...||..|+
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 3455699999988766655555 49999999998
No 100
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=82.75 E-value=1.1 Score=29.02 Aligned_cols=39 Identities=21% Similarity=0.481 Sum_probs=29.5
Q ss_pred CCCccCccccccccCCCceEEec--CCCcCCHHhHHHHHhcC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLP--CDHFYHTPCIEPWLQLH 133 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lp--C~H~Fh~~Ci~~wl~~~ 133 (176)
...+.|.+|.+.+++. ..++.| =.|.||..|-+..++..
T Consensus 13 ~a~l~CtlC~erLEdt-HFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERLEDT-HFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCCSST-TSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhhccC-ceeeCCCccCCeeeccccHHHHHhc
Confidence 3456799999999865 334455 57999999999988653
No 101
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=81.46 E-value=0.93 Score=37.41 Aligned_cols=50 Identities=24% Similarity=0.512 Sum_probs=32.4
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHH---hcCC--CCccccccccCCCc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWL---QLHG--TCPICRQTLHSESA 148 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl---~~~~--~CP~CR~~l~~~~~ 148 (176)
.+.|+|-...+..+ ++-..|.|.-|.+ +..|| .... .||+|.+.+..++.
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~~dL 269 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAYESL 269 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCGGGE
T ss_pred eeeCCCccceeccC--CcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCHHHe
Confidence 45699888887644 5556699985543 23333 2233 69999998865543
No 102
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=81.41 E-value=0.32 Score=35.67 Aligned_cols=47 Identities=23% Similarity=0.526 Sum_probs=31.5
Q ss_pred CCccCccccccccCCCceEEec-CCCcCCHHhHHHHH-----hcCCCCcccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWL-----QLHGTCPICRQT 142 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl-----~~~~~CP~CR~~ 142 (176)
+...| +|......+...+... |...||..|+.--. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45568 9988765444455554 99999999994211 123379999874
No 103
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=80.79 E-value=0.23 Score=31.21 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=30.8
Q ss_pred CCccCccccccccCCCceEEec-CCCcCCHHhHHHHH----hcCCCCccccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWL----QLHGTCPICRQTL 143 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl----~~~~~CP~CR~~l 143 (176)
....| ||......++..+... |...||..|+.--- .....||.|+..-
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 34558 7987654444444444 99999999985421 1233699997643
No 104
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=80.48 E-value=0.42 Score=32.46 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=24.7
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHh
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ 131 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~ 131 (176)
.+..|.||.+.-...+-+.--.|...||..|+...+.
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccc
Confidence 4567999977633222222234999999999987653
No 105
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=80.24 E-value=0.31 Score=32.61 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=27.9
Q ss_pred ccCccccccccCCCceEEec-CCCcCCHHhHHHHHhc---CCCCccccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQL---HGTCPICRQ 141 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~---~~~CP~CR~ 141 (176)
..| ||......+ ..+... |...||..|+..-+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 887665433 333333 9999999999653322 237999974
No 106
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=79.84 E-value=5.7 Score=26.08 Aligned_cols=50 Identities=22% Similarity=0.434 Sum_probs=35.0
Q ss_pred CccCccccccccCCC--ceEE-e-cCCCcCCHHhHHHHH-hcCCCCccccccccC
Q psy5318 96 NLQCSVCWEQFTLDE--AVRK-L-PCDHFYHTPCIEPWL-QLHGTCPICRQTLHS 145 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~--~~~~-l-pC~H~Fh~~Ci~~wl-~~~~~CP~CR~~l~~ 145 (176)
...|.||-+++.... .+.+ . -|+--.|+.|.+--. +-+..||-|+.++..
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 456999999865432 1222 2 388889999997654 346689999998864
No 107
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=79.77 E-value=1.9 Score=30.88 Aligned_cols=43 Identities=26% Similarity=0.406 Sum_probs=29.6
Q ss_pred CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHh---------cCC--CCccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQ---------LHG--TCPICRQ 141 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~---------~~~--~CP~CR~ 141 (176)
.+..|.+|.+.= .+... .|...||..|+.+-+. ... .||.|+.
T Consensus 62 ~~d~C~vC~~GG----~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGG----NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCS----SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCC----cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 356699997742 23333 4999999999997652 112 6999974
No 108
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.21 E-value=3.4 Score=28.00 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=22.1
Q ss_pred CCccCccccccc-----cCCCceEEe-cCCCcCCHHhHH
Q psy5318 95 SNLQCSVCWEQF-----TLDEAVRKL-PCDHFYHTPCIE 127 (176)
Q Consensus 95 ~~~~C~IC~~~~-----~~~~~~~~l-pC~H~Fh~~Ci~ 127 (176)
....|.+|+..- ..++.++.- .|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 455699998753 122334444 499999999995
No 109
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=77.35 E-value=0.35 Score=33.73 Aligned_cols=47 Identities=15% Similarity=0.352 Sum_probs=31.5
Q ss_pred ccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCCCCccccccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHGTCPICRQTL 143 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l 143 (176)
..|..|...|..-..-... .||.+||..|..........|-.|-..+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 4699999988654333334 4999999999876655566788886543
No 110
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=77.20 E-value=0.4 Score=35.90 Aligned_cols=44 Identities=25% Similarity=0.574 Sum_probs=29.4
Q ss_pred CccCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCC----CCccccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQTL 143 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~~l 143 (176)
+..|.+|.+. ++ +... .|...||..|+.+=+.... .||.|+..-
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 3459999854 22 2222 3889999999976554322 699998753
No 111
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.80 E-value=0.93 Score=28.58 Aligned_cols=45 Identities=22% Similarity=0.530 Sum_probs=29.2
Q ss_pred ccCccccccccCCCceEEe-cCCCcCCHHhHHHH------H---hcCCCCccccccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPW------L---QLHGTCPICRQTL 143 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~w------l---~~~~~CP~CR~~l 143 (176)
..| ||...... ...+.. .|...||..|+.-- + .....||.|+..-
T Consensus 17 ~~C-~C~~~~~~-~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 17 LYC-ICRQPHNN-RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCS-TTCCCCCS-SCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CEE-ECCCccCC-CCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 446 89877642 233444 39999999999321 1 2455899998653
No 112
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=75.61 E-value=2.3 Score=28.88 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=30.9
Q ss_pred CCCccCccccccccCCCceEEec---CCCcCCHHhHHHHHhcCC----CCccccccccCCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLP---CDHFYHTPCIEPWLQLHG----TCPICRQTLHSES 147 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lp---C~H~Fh~~Ci~~wl~~~~----~CP~CR~~l~~~~ 147 (176)
..+..|.+|.+. + .++.-. |...||..|+. |.... .||.|+-.+..+.
T Consensus 13 ~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k~ 67 (107)
T 4gne_A 13 MHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSSA 67 (107)
T ss_dssp SSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCSB
T ss_pred CCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCCC
Confidence 455669999842 2 233333 77999999997 44322 4888876665554
No 113
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=74.92 E-value=2.2 Score=27.46 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=32.8
Q ss_pred CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHH--------hcCCCCcccccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWL--------QLHGTCPICRQTLH 144 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl--------~~~~~CP~CR~~l~ 144 (176)
+...|.+|...|..-..-... .||++||..|....+ +....|-.|-..+.
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 345699999998755433334 499999999976542 11225777765554
No 114
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=74.71 E-value=2.3 Score=35.23 Aligned_cols=50 Identities=20% Similarity=0.519 Sum_probs=32.5
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHH---hcCC--CCccccccccCCCc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWL---QLHG--TCPICRQTLHSESA 148 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl---~~~~--~CP~CR~~l~~~~~ 148 (176)
.+.|++-...+.. .++-..|.|.-|.+- ..|| .... .||+|.+.+..++.
T Consensus 249 SL~CPlS~~ri~~--PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~dL 303 (371)
T 3i2d_A 249 SLQCPISYTRMKY--PSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALENL 303 (371)
T ss_dssp ESBCTTTSSBCSS--EEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGGGE
T ss_pred eecCCCccccccc--cCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHHHe
Confidence 4669988888764 455566999855542 3333 2222 69999998755543
No 115
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.48 E-value=1.4 Score=29.03 Aligned_cols=44 Identities=25% Similarity=0.605 Sum_probs=26.5
Q ss_pred CCccCccccccccCCCceEEe-c--CC-CcCCHHhHHHHHhc----CCCCccccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-P--CD-HFYHTPCIEPWLQL----HGTCPICRQTL 143 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-p--C~-H~Fh~~Ci~~wl~~----~~~CP~CR~~l 143 (176)
+...| ||..... ++ .+.. . |. ..||..|+. |.. +-.||.|+...
T Consensus 35 e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 44557 9987542 32 1111 2 55 689999996 332 22699997653
No 116
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=73.92 E-value=2.2 Score=26.61 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=23.2
Q ss_pred ccCccccccccCCCceEEe-cCCCcCCHHhHHH
Q psy5318 97 LQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEP 128 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~ 128 (176)
..|.+|...|..-..-... .||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 4699999988754333333 4999999999753
No 117
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=73.81 E-value=2.1 Score=27.93 Aligned_cols=54 Identities=20% Similarity=0.360 Sum_probs=36.5
Q ss_pred CCCccCccccccccCCCceEEe-cCCCcCCHHhHHHHH-------hcCCCCccccccccCCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWL-------QLHGTCPICRQTLHSES 147 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl-------~~~~~CP~CR~~l~~~~ 147 (176)
++...|.+|...|..-..-... .||++||..|....+ +....|-.|-..+....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~~ 68 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGS 68 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhcc
Confidence 3455699999998755433333 499999999986532 12236999977775543
No 118
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=73.71 E-value=2 Score=29.88 Aligned_cols=33 Identities=15% Similarity=0.475 Sum_probs=24.1
Q ss_pred CccCccccccccCCCceEEe-cCCCcCCHHhHHH
Q psy5318 96 NLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEP 128 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~ 128 (176)
...|.+|...|.....-... .||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 45699999998755433344 4999999999654
No 119
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=73.59 E-value=0.79 Score=29.17 Aligned_cols=47 Identities=26% Similarity=0.488 Sum_probs=29.1
Q ss_pred CCccCccccccccCCCceEEe---cCCCcCCHHhHHHHHh---------cCCCCccccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL---PCDHFYHTPCIEPWLQ---------LHGTCPICRQTL 143 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l---pC~H~Fh~~Ci~~wl~---------~~~~CP~CR~~l 143 (176)
....| ||......+ ..+.. .|...||..|+.---. .+..||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34557 798764333 22322 4889999999953211 234799998754
No 120
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=73.53 E-value=0.96 Score=28.09 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=5.0
Q ss_pred ccCcccccccc
Q psy5318 97 LQCSVCWEQFT 107 (176)
Q Consensus 97 ~~C~IC~~~~~ 107 (176)
..|..|...+.
T Consensus 28 F~C~~C~~~L~ 38 (76)
T 1iml_A 28 LKCEKCGKTLT 38 (76)
T ss_dssp CBCTTTCCBCC
T ss_pred CCccccCccCC
Confidence 34445544443
No 121
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=73.49 E-value=2.3 Score=27.24 Aligned_cols=50 Identities=20% Similarity=0.511 Sum_probs=31.9
Q ss_pred CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHHh------cCCCCcccccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQ------LHGTCPICRQTLH 144 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~------~~~~CP~CR~~l~ 144 (176)
+...|.+|...|.....-... .||.+||..|....+. ....|-.|-..|.
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 345699999998755333333 4999999999764321 1125777755553
No 122
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=73.31 E-value=3.7 Score=28.85 Aligned_cols=43 Identities=26% Similarity=0.491 Sum_probs=28.3
Q ss_pred CCccCccccccccCCCceEEe-cCCCcCCHHhHHHHH------hc---CC--CCccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWL------QL---HG--TCPICRQ 141 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl------~~---~~--~CP~CR~ 141 (176)
.+..|.||.+. ..+..- .|-..||..|+.+-+ +. .. .|+.|+-
T Consensus 56 ~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 44569999864 222222 389999999999752 11 12 6999964
No 123
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=73.31 E-value=0.27 Score=29.85 Aligned_cols=49 Identities=16% Similarity=0.409 Sum_probs=30.7
Q ss_pred CCCccCcccccc-ccCCCceEEecCCCcCCHHhHHHHH-hcCC---CCcccccc
Q psy5318 94 DSNLQCSVCWEQ-FTLDEAVRKLPCDHFYHTPCIEPWL-QLHG---TCPICRQT 142 (176)
Q Consensus 94 ~~~~~C~IC~~~-~~~~~~~~~lpC~H~Fh~~Ci~~wl-~~~~---~CP~CR~~ 142 (176)
.+...|.||+.. |.++-.-.-.-|.-.||..|-..|- +.+. .|-+||+.
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQ 60 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHHH
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhhc
Confidence 456779999875 5544333323488888888876663 3333 47777753
No 124
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=72.68 E-value=2.1 Score=27.91 Aligned_cols=49 Identities=18% Similarity=0.472 Sum_probs=33.1
Q ss_pred CccCccccccccCCCceEEe-cCCCcCCHHhHHHHHh------cCCCCcccccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQ------LHGTCPICRQTLH 144 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~------~~~~CP~CR~~l~ 144 (176)
...|.+|...|..-..-... .||++||..|...+.. ....|-.|-..+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 34599999988754433334 4999999999865431 2236888866554
No 125
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=72.11 E-value=0.77 Score=28.54 Aligned_cols=45 Identities=20% Similarity=0.519 Sum_probs=28.5
Q ss_pred CCccCccccccccCCCceEEec-CCCcCCHHhHHHHH---hcCCCCccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWL---QLHGTCPICRQ 141 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl---~~~~~CP~CR~ 141 (176)
+...| ||..... ++..+... |...||..|+.--- ...-.||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 44558 9987654 33344443 99999999985321 12336998865
No 126
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=72.07 E-value=4.3 Score=31.02 Aligned_cols=49 Identities=18% Similarity=0.459 Sum_probs=32.7
Q ss_pred CccCccccccccCCCceEEe-cCCCcCCHHhHHHHHh--------cCCCCcccccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQ--------LHGTCPICRQTLH 144 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~--------~~~~CP~CR~~l~ 144 (176)
+..|.+|...|..-..-... .||++||..|-..... ....|-.|-..+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 45799999988755433444 4999999999765421 1225777765554
No 127
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.75 E-value=2.6 Score=27.02 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=24.0
Q ss_pred CCccCccccccccCCCceEEe-cCCCcCCHHhHHH
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEP 128 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~ 128 (176)
+...|.+|...|..-..-... .||.+||..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 345699999998654333333 4999999999643
No 128
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=71.24 E-value=3 Score=26.65 Aligned_cols=42 Identities=19% Similarity=0.411 Sum_probs=30.3
Q ss_pred CCCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
.....|..|.+.+... .+..-+..||..|. .|-.|+..|...
T Consensus 23 ~~~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGA---VVKARDKYRHPECF--------VCADCNLNLKQK 64 (89)
T ss_dssp CSCCBCTTTCCBCCSC---CEESSSCEECTTTC--------CCSSSCCCTTTS
T ss_pred CcCCCcccCCCEeccc---EEEECCceECccCC--------EecCCCCCCCCC
Confidence 3446699999887742 23447789998885 599998888654
No 129
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.96 E-value=1.5 Score=27.12 Aligned_cols=41 Identities=24% Similarity=0.523 Sum_probs=29.7
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
...|..|.+.+...+.+ ..-+..||..|. .|..|+..|...
T Consensus 9 ~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF--------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKV--SSLGKDWHKFCL--------KCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTTEE--EETTEEEETTTC--------BCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCeEE--EECCeEeeCCCC--------CCCCCCCccCCC
Confidence 34599999988755543 345778888775 599998888644
No 130
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=70.58 E-value=2 Score=32.60 Aligned_cols=33 Identities=18% Similarity=0.509 Sum_probs=24.7
Q ss_pred CccCccccccccCCCceEEec-CCCcCCHHhHHH
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEP 128 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~ 128 (176)
+..|.+|...|..-..-.... ||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 467999999987554334444 999999999754
No 131
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=69.79 E-value=1.4 Score=26.76 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=28.6
Q ss_pred ccCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCCCCccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPIC 139 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~~CP~C 139 (176)
..|--|+..+... ....-+ |++.||.+|=.---+.=..||.|
T Consensus 16 ~~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3499999888543 223445 99999999965422344479988
No 132
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=69.71 E-value=0.39 Score=30.75 Aligned_cols=43 Identities=28% Similarity=0.607 Sum_probs=25.5
Q ss_pred cCccccccccCCCceEEec-CCCcCCHHhHHHHHhcC-----CCCccccc
Q psy5318 98 QCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLH-----GTCPICRQ 141 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~-----~~CP~CR~ 141 (176)
.|.||...-.. +.+..-. |...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 35566544222 2333333 99999999998755432 25888865
No 133
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=69.40 E-value=0.74 Score=31.20 Aligned_cols=44 Identities=27% Similarity=0.528 Sum_probs=27.9
Q ss_pred cCccccccccCCCceEEec-CCCcCCHHhHHHHHhcCC----CCcccccc
Q psy5318 98 QCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHG----TCPICRQT 142 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~~----~CP~CR~~ 142 (176)
.|.+|...-.. +.+..-. |...||..|+.+-+.... .||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 47777654322 2333333 999999999986554322 59988654
No 134
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.42 E-value=2.4 Score=27.21 Aligned_cols=40 Identities=15% Similarity=0.315 Sum_probs=29.0
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
...|..|-+.+.. + .+..-+..||..|. .|-.|+..|...
T Consensus 25 ~~~C~~C~~~I~~-~--~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIRG-P--FLVALGKSWHPEEF--------NCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCCS-C--EEEETTEEECTTTC--------BCSSSCCBCSSS
T ss_pred CCCCccCCCEecc-e--EEEECCccccccCC--------ccCCCCCCCCCC
Confidence 4569999888853 2 33446888998876 699999888644
No 135
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=68.02 E-value=1.8 Score=27.04 Aligned_cols=44 Identities=23% Similarity=0.578 Sum_probs=26.6
Q ss_pred CCccCccccccccCCCceEEe-c--CC-CcCCHHhHHHHHhcC----CCCccccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-P--CD-HFYHTPCIEPWLQLH----GTCPICRQTL 143 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-p--C~-H~Fh~~Ci~~wl~~~----~~CP~CR~~l 143 (176)
+...| ||..... + ..+.. . |. ..||..|+. |... -.||.|+...
T Consensus 15 ~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 44557 8977532 3 22222 2 55 689999997 4332 2699997653
No 136
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.71 E-value=2.9 Score=26.34 Aligned_cols=40 Identities=23% Similarity=0.587 Sum_probs=29.4
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
....|..|-+.+..++.+.. -+..||..|. .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a--~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA--LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE--TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE--CCcccccccC--------CcCcCCCCcC
Confidence 34569999998876654443 4778898875 6889988875
No 137
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=66.83 E-value=1.2 Score=34.49 Aligned_cols=43 Identities=28% Similarity=0.620 Sum_probs=24.8
Q ss_pred cCccccccccCCCceEEec-CCCcCCHHhHHHHHhcC-----CCCccccc
Q psy5318 98 QCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLH-----GTCPICRQ 141 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~-----~~CP~CR~ 141 (176)
.|.+|...-. +....... |...||..|+.+=|... =.||.|+.
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 5788865322 22333343 99999999998655322 15999965
No 138
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=66.29 E-value=0.37 Score=33.09 Aligned_cols=47 Identities=23% Similarity=0.525 Sum_probs=30.0
Q ss_pred cCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcCC----CCccccccccC
Q psy5318 98 QCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQTLHS 145 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~~l~~ 145 (176)
.|.||...-.. ..+..- .|...||..|+.+-|.... .||.|+..+..
T Consensus 60 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 60 SCILCGTSEND-DQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp CCTTTTCCTTT-TTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred ccCcccccCCC-CceEEcCCCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 47888764322 233333 3999999999986443322 59999776543
No 139
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=66.25 E-value=0.7 Score=28.91 Aligned_cols=43 Identities=28% Similarity=0.620 Sum_probs=26.0
Q ss_pred cCccccccccCCCceEEec-CCCcCCHHhHHHHHhcC-----CCCccccc
Q psy5318 98 QCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLH-----GTCPICRQ 141 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~~~-----~~CP~CR~ 141 (176)
.|.||...-. +..+..-. |...||..|+.+-|... =.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 3567764321 22333333 99999999998654322 25888864
No 140
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.10 E-value=3.2 Score=25.04 Aligned_cols=38 Identities=24% Similarity=0.552 Sum_probs=26.6
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
..|..|.+.+... .+..-+..||..|. +|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITTG---GVTYREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCSS---EEESSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCCcccCCeeccc---eEEECccccCCCCC--------ccCCCCCcCCc
Confidence 4588888877643 23446778888775 58888888753
No 141
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.69 E-value=0.77 Score=29.33 Aligned_cols=43 Identities=28% Similarity=0.607 Sum_probs=27.2
Q ss_pred cCccccccccCCCceEEe-cCCCcCCHHhHHHHHhcC-----CCCccccc
Q psy5318 98 QCSVCWEQFTLDEAVRKL-PCDHFYHTPCIEPWLQLH-----GTCPICRQ 141 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl~~~-----~~CP~CR~ 141 (176)
.|.||...-. +..+..- .|...||..|+.+-|... =.||.|+.
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 5888875422 2333333 399999999998644321 25888864
No 142
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=65.26 E-value=3 Score=29.41 Aligned_cols=49 Identities=27% Similarity=0.387 Sum_probs=31.2
Q ss_pred CCCccCcccccccc-CCCceEEe-cCCCcCCHHhHHHHHhcCC----CCcccccc
Q psy5318 94 DSNLQCSVCWEQFT-LDEAVRKL-PCDHFYHTPCIEPWLQLHG----TCPICRQT 142 (176)
Q Consensus 94 ~~~~~C~IC~~~~~-~~~~~~~l-pC~H~Fh~~Ci~~wl~~~~----~CP~CR~~ 142 (176)
.....|.+|...|. ....-... .|.|.+|..|-..-..... .|-+|++.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 34567999999983 32333444 4999999999753211111 48888764
No 143
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=65.18 E-value=3.9 Score=25.29 Aligned_cols=32 Identities=22% Similarity=0.523 Sum_probs=24.3
Q ss_pred CCCccCccccccccCCCceEEecC-CCcCCHHhHHHH
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLPC-DHFYHTPCIEPW 129 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lpC-~H~Fh~~Ci~~w 129 (176)
++..-|.||.++ -.++-+.| +-.||..|....
T Consensus 6 ee~pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED----ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC----CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC----CeEEecCCCCceehHHHHHHH
Confidence 455669999887 33566679 789999998775
No 144
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.00 E-value=4.4 Score=24.52 Aligned_cols=39 Identities=31% Similarity=0.634 Sum_probs=24.9
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
..|..|.+.+...+..+ ..=+..||..|. .|-.|+..|.
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGV-VALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCSSSCSCCCSSSCCE-ECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCccCCCccCCCceEE-EECCCeEcccCC--------cccccCCcCC
Confidence 45888887765432222 234677887775 5888888774
No 145
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.71 E-value=3.3 Score=25.81 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=28.6
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
...|..|-+.+... .+..-+..||..|. +|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCHHH
T ss_pred CCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCCCC
Confidence 45699999887742 33446789998886 58888888753
No 146
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=63.62 E-value=3 Score=27.91 Aligned_cols=12 Identities=17% Similarity=0.744 Sum_probs=10.5
Q ss_pred cCCHHhHHHHHh
Q psy5318 120 FYHTPCIEPWLQ 131 (176)
Q Consensus 120 ~Fh~~Ci~~wl~ 131 (176)
-||+.|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999984
No 147
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=63.40 E-value=3.1 Score=27.82 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=10.5
Q ss_pred cCCHHhHHHHHh
Q psy5318 120 FYHTPCIEPWLQ 131 (176)
Q Consensus 120 ~Fh~~Ci~~wl~ 131 (176)
-||+.|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 148
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.00 E-value=4 Score=25.41 Aligned_cols=41 Identities=20% Similarity=0.534 Sum_probs=29.2
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..|..|.+.+...+.++ ..=+..||..|. +|-.|++.|...
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNV-EYKGTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEE-ECSSCEEETTTC--------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEE-EECccccccccC--------chhhCCCccCCC
Confidence 46999988887554433 335778888775 588898887654
No 149
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.21 E-value=4.1 Score=25.63 Aligned_cols=43 Identities=28% Similarity=0.647 Sum_probs=30.7
Q ss_pred CCccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCC
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~ 147 (176)
....|..|.+.+...+.+. .-+..||..|. +|-.|+..|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSCF--------RCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTTC--------BCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCcC--------EEcCCCCCcCCCc
Confidence 3456999998876554433 35778998885 5888988886554
No 150
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=60.43 E-value=1.7 Score=28.61 Aligned_cols=43 Identities=16% Similarity=0.481 Sum_probs=25.5
Q ss_pred CCCccCccccccccCCCceEEec-CC---CcCCHHhHHHHHhc----CCCCcc-ccc
Q psy5318 94 DSNLQCSVCWEQFTLDEAVRKLP-CD---HFYHTPCIEPWLQL----HGTCPI-CRQ 141 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~~~~~~lp-C~---H~Fh~~Ci~~wl~~----~~~CP~-CR~ 141 (176)
++...| ||..... + ..+... |. ..||..|+. |.. .-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g-~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-G-PMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-S-SEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-C-CEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 345557 9987432 2 222222 44 689999995 322 226999 975
No 151
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.38 E-value=4.4 Score=24.58 Aligned_cols=41 Identities=17% Similarity=0.383 Sum_probs=28.5
Q ss_pred ccCccccccccC--CCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 97 LQCSVCWEQFTL--DEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 97 ~~C~IC~~~~~~--~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..|..|-+.+.. .+.+ +..-+..||..|. +|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~~~~~~-~~a~~~~wH~~CF--------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKY-ISFEERQWHNDCF--------NCKKCSLSLVGR 48 (72)
T ss_dssp CSBTTTTBCCCCSSSCSC-EECSSCEECTTTC--------BCSSSCCBCTTS
T ss_pred CCCcCCCccccCCCCcce-EEECCcccCcccC--------EeccCCCcCCCC
Confidence 459999888774 2232 2336788998885 688998888643
No 152
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.35 E-value=3.6 Score=24.77 Aligned_cols=38 Identities=24% Similarity=0.501 Sum_probs=26.0
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
..|..|.+.+.. +. +..-+..||..|. .|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 6 SGCVKCNKAITS-GG--ITYQDQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCCSSSCCCCCT-TC--EEETTEEECTTTT--------BCTTTCCBCTT
T ss_pred CCCcccCCEeCc-ce--EEECccccccCcC--------EECCCCCCCCC
Confidence 458888887753 32 2335778888775 58888888753
No 153
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.35 E-value=3.5 Score=24.90 Aligned_cols=39 Identities=21% Similarity=0.503 Sum_probs=25.9
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..|..|.+.+.. +. +..-+..||..|. +|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~-~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIG-RV--IKAMNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCS-CC--EEETTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CcCccCCCEecc-eE--EEECcccccccCC--------EeCCCCCcCCCC
Confidence 458888887763 22 2335677888775 588888877654
No 154
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=60.31 E-value=3.3 Score=24.67 Aligned_cols=38 Identities=13% Similarity=0.379 Sum_probs=27.2
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
..|..|.+.+. ++ .+..-+..||..|. .|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCcccCCEec-ce--EEEECccccccCcC--------EECCCCCCCCC
Confidence 45889988876 32 34456778888775 58889888764
No 155
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=60.25 E-value=8.5 Score=26.03 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=17.6
Q ss_pred CCCcCCHHhHH------HHHhc-----CCCCccccccc
Q psy5318 117 CDHFYHTPCIE------PWLQL-----HGTCPICRQTL 143 (176)
Q Consensus 117 C~H~Fh~~Ci~------~wl~~-----~~~CP~CR~~l 143 (176)
|+..||..|+. .-+.. ...||.|....
T Consensus 8 c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~ 45 (140)
T 2ku7_A 8 CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 45 (140)
T ss_dssp CSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTS
T ss_pred CCCccCCcccccCHHHHHHHhhccccceeeCccccccc
Confidence 88899999961 12222 34799996643
No 156
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.91 E-value=5 Score=24.23 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=28.1
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..|..|.+.+...+. .+..-+..||..|. +|-.|+.+|...
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 6 SGCSACGETVMPGSR-KLEYGGQTWHEHCF--------LCSGCEQPLGSR 46 (72)
T ss_dssp CBCSSSCCBCCSSSC-EECSTTCCEETTTC--------BCTTTCCBTTTS
T ss_pred CCCccCCCccccCcc-EEEECccccCcccC--------eECCCCCcCCCC
Confidence 458999888775332 33346778888775 588888877643
No 157
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=58.76 E-value=2 Score=35.59 Aligned_cols=49 Identities=18% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCccCccccccccCCCceEE-ecCCCcCCHHhHHHHHh-------cCCCCccccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQ-------LHGTCPICRQTL 143 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~-lpC~H~Fh~~Ci~~wl~-------~~~~CP~CR~~l 143 (176)
+...|.+|...|.....-.. -.||++||..|-..++. ....|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34569999998864422222 24999999999876531 123577775544
No 158
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.32 E-value=5.5 Score=24.00 Aligned_cols=41 Identities=17% Similarity=0.394 Sum_probs=27.6
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..|..|.+.+...+.++ ..-+..||..|. .|-.|+..|...
T Consensus 6 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKM-EYKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSCEE-EETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCccCCCcccCCceEE-EECcCeecccCC--------cccccCCccCCC
Confidence 35889988877544333 235678887775 588888877544
No 159
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.64 E-value=4.8 Score=24.76 Aligned_cols=40 Identities=20% Similarity=0.409 Sum_probs=27.8
Q ss_pred ccCccccccccC--CCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 97 LQCSVCWEQFTL--DEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 97 ~~C~IC~~~~~~--~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
..|..|.+.+.. ... .+..-+..||..|. .|-.|+..|..
T Consensus 6 ~~C~~C~~~I~~~g~~~-~~~a~~~~wH~~CF--------~C~~C~~~L~~ 47 (76)
T 1x68_A 6 SGCVACSKPISGLTGAK-FICFQDSQWHSECF--------NCGKCSVSLVG 47 (76)
T ss_dssp CCCTTTCCCCCTTTTCC-EEEETTEEEEGGGC--------BCTTTCCBCSS
T ss_pred CCCccCCCcccCCCCce-eEEECCcccCcccC--------ChhhCCCcCCC
Confidence 359999888774 222 33346778998886 58888888753
No 160
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.95 E-value=4.9 Score=25.06 Aligned_cols=40 Identities=18% Similarity=0.485 Sum_probs=28.2
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
...|.-|.+.+. ++. +..-+..||..|. +|-.|+.+|...
T Consensus 15 ~~~C~~C~~~I~-~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIID-EQP--LIFKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCC-SCC--CCCSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCccCCCEec-ceE--EEECcceeCCCCC--------EeCCCCCccCCC
Confidence 456999988877 322 2346788898775 688898888644
No 161
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=55.34 E-value=2.9 Score=26.13 Aligned_cols=40 Identities=25% Similarity=0.519 Sum_probs=26.4
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..|..|.+.+..++. +..-+..||..|. +|-.|+.+|...
T Consensus 8 ~~C~~C~~~I~~~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEE--VQCDGRSFHRCCF--------LCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTE--EEETTEEEESSSE--------ECSSSCCEECSS
T ss_pred CcCcCcCccccCcee--EEeCCcccccccC--------ccCCCCCCCCCC
Confidence 458888888765543 2335677887765 477787777544
No 162
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=54.97 E-value=0.83 Score=28.26 Aligned_cols=43 Identities=21% Similarity=0.500 Sum_probs=25.8
Q ss_pred ccCccccccccCCCceEEec---CCCcCCHHhHHHHH---h-----cCCCCccccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKLP---CDHFYHTPCIEPWL---Q-----LHGTCPICRQ 141 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lp---C~H~Fh~~Ci~~wl---~-----~~~~CP~CR~ 141 (176)
..| ||......+ ..+..- |...||..|+.--- . .+-.||.||.
T Consensus 11 v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 446 786654443 334442 88899999983210 0 1346999985
No 163
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=54.83 E-value=2.7 Score=36.06 Aligned_cols=47 Identities=19% Similarity=0.538 Sum_probs=30.4
Q ss_pred CccCccccccccCCCceEEec-CCCcCCHHhHHHHHh-----cCCCCccccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQ-----LHGTCPICRQTL 143 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~-----~~~~CP~CR~~l 143 (176)
...| ||...+..+...+... |...||..|+.---. ..-.||.|+...
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 3445 8987764444455554 999999999943211 123799998653
No 164
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=54.44 E-value=14 Score=24.90 Aligned_cols=51 Identities=12% Similarity=0.039 Sum_probs=35.1
Q ss_pred ccCccccccccC-CCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCCCc
Q psy5318 97 LQCSVCWEQFTL-DEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148 (176)
Q Consensus 97 ~~C~IC~~~~~~-~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~~~ 148 (176)
..|..|...+.. +.. ....=+..||..|..+.+..+..|-.|...+.....
T Consensus 33 F~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCe-EEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 458888777752 111 223456789999998877666689999998876443
No 165
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.22 E-value=6 Score=24.42 Aligned_cols=38 Identities=24% Similarity=0.549 Sum_probs=27.1
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
..|..|.+.+... .+..=+..||..|. +|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~---~v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 2cuq_A 16 PRCARCSKTLTQG---GVTYRDQPWHRECL--------VCTGCQTPLAG 53 (80)
T ss_dssp CCCTTTCCCCCSC---CEESSSSEECTTTC--------BCSSSCCBCTT
T ss_pred CcCCCCCCEecCc---EEEECCchhhhhhC--------CcccCCCcCCC
Confidence 4588898877643 33456788888775 58889888853
No 166
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.65 E-value=6.6 Score=23.97 Aligned_cols=42 Identities=24% Similarity=0.558 Sum_probs=28.9
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
...|..|.+.+...+.++ ..-+..||..|. .|-.|+.+|...
T Consensus 11 ~~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIV-NSNGELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCBCSSSCCBCCSTTTCE-EETTEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCchhcCCccCCCceEE-EeCccEeccccC--------eECCCCCCCCCC
Confidence 355999998886544433 235778888775 588888887654
No 167
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.33 E-value=5.3 Score=24.83 Aligned_cols=39 Identities=23% Similarity=0.576 Sum_probs=26.9
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..|..|.+.+. ++. +..-+..||..|. .|-.|++.|...
T Consensus 16 ~~C~~C~~~I~-~~~--v~a~~~~wH~~CF--------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEV--VSALGKTYHPDCF--------VCAVCRLPFPPG 54 (81)
T ss_dssp CBCTTTCCBCC-SCC--EEETTEEECTTTS--------SCSSSCCCCCSS
T ss_pred CcCccccCEec-cce--EEECCceeCccCC--------ccccCCCCCCCC
Confidence 35999988876 322 2336788888775 588888877543
No 168
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=52.93 E-value=4.8 Score=26.86 Aligned_cols=41 Identities=29% Similarity=0.657 Sum_probs=24.8
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
+..||+|..++..... +.+|..|-.. ++....||-|.++|.
T Consensus 32 ~~~CP~Cq~eL~~~g~-------~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNG-------HARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEEETT-------EEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCcceecCC-------EEECccccch-hhccccCcchhhHHH
Confidence 3669999888754322 2224444322 244557999998875
No 169
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.74 E-value=5.4 Score=24.45 Aligned_cols=37 Identities=24% Similarity=0.477 Sum_probs=23.5
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
..|.-|...+... .+..-+..||..|. +|-.|+.+|.
T Consensus 6 ~~C~~C~~~I~~~---~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITGR---VLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSSC---CBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred CCcccCCCEecCe---eEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 3488887766542 22346677887774 5777777665
No 170
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=50.25 E-value=4 Score=25.51 Aligned_cols=45 Identities=20% Similarity=0.489 Sum_probs=28.7
Q ss_pred CccccccccCCCceEEec-CCCcCCHHhHHHHHh-----cCCCCccccccc
Q psy5318 99 CSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQ-----LHGTCPICRQTL 143 (176)
Q Consensus 99 C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~wl~-----~~~~CP~CR~~l 143 (176)
--||...+..+...+... |.-.||..|+.---. ..-.||.|+...
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccC
Confidence 348877654333444443 999999999953211 234799998653
No 171
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.06 E-value=6 Score=24.58 Aligned_cols=40 Identities=23% Similarity=0.500 Sum_probs=27.6
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
...|..|.+.+.. . .+..-+..||..|. +|..|+..|...
T Consensus 15 ~~~C~~C~~~I~~-~--~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (81)
T 2dlo_A 15 LEKCATCSQPILD-R--ILRAMGKAYHPGCF--------TCVVCHRGLDGI 54 (81)
T ss_dssp CCBCTTTCCBCCS-C--CEEETTEEECTTTC--------BCSSSCCBCTTS
T ss_pred CCccccCCCeecc-e--eEEECCccccHHhc--------CcccCCCccCCC
Confidence 3458889887763 2 23336778888775 699998888643
No 172
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=49.28 E-value=5.8 Score=26.98 Aligned_cols=34 Identities=18% Similarity=0.433 Sum_probs=17.2
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHH
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWL 130 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl 130 (176)
-..|..|...+..++... ..=+..||..|..+.+
T Consensus 36 CF~C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYL-LINSDIVCEQDIYEWT 69 (123)
T ss_dssp TCBCTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHH
T ss_pred cCccccCCCCCCCCCcEE-eeCCEEEcHHHhHHHh
Confidence 345666666554333222 2235566666665554
No 173
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.95 E-value=8.4 Score=24.53 Aligned_cols=41 Identities=22% Similarity=0.509 Sum_probs=28.2
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
...|..|.+.+...+. +..-+..||..|. .|-.|+..|...
T Consensus 15 ~~~C~~C~~~I~~~~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMER--LLANQQVFHISCF--------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSE--EECSSSEEETTTC--------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCcee--EEECCCEECCCCC--------eeCCCCCCCCCC
Confidence 4569999888765443 3456778888775 577887777654
No 174
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.93 E-value=6.6 Score=24.23 Aligned_cols=39 Identities=18% Similarity=0.436 Sum_probs=27.2
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..|..|.+.+.. +. +..-+..||..|. +|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~-~~--v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NY--LSAMDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp CBCTTTCCBCCS-SC--EEETTEEECTTTC--------BCSSSCCBSCSS
T ss_pred CccccCCCeecc-ee--EEECCCeEecCcC--------ChhhCCCCCCCC
Confidence 458889888764 22 2335678888775 588998888653
No 175
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=48.83 E-value=6.2 Score=23.59 Aligned_cols=42 Identities=24% Similarity=0.588 Sum_probs=29.5
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
...|..|.+.+...+.++. .=+..||..|. .|-.|+..|...
T Consensus 11 ~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCCCCC
Confidence 3469999998876554332 35667888776 588898887654
No 176
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=48.73 E-value=5.9 Score=20.32 Aligned_cols=27 Identities=30% Similarity=0.597 Sum_probs=17.6
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHh
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPC 125 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~C 125 (176)
..|+.|...+-..+.+. .=|..||..|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGG
T ss_pred CcCCccCCEEecceeEE--ECCeEecccC
Confidence 35888987665443332 3577888887
No 177
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=48.08 E-value=2.9 Score=24.22 Aligned_cols=40 Identities=20% Similarity=0.498 Sum_probs=23.9
Q ss_pred cccccccCCCceEEe-cCCCcCCHHhHHHHH---hcCCCCccccc
Q psy5318 101 VCWEQFTLDEAVRKL-PCDHFYHTPCIEPWL---QLHGTCPICRQ 141 (176)
Q Consensus 101 IC~~~~~~~~~~~~l-pC~H~Fh~~Ci~~wl---~~~~~CP~CR~ 141 (176)
||..... +...+.- .|...||..|+.--- ...-.||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6765443 2233333 388999999985322 12336998875
No 178
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.41 E-value=6.7 Score=24.30 Aligned_cols=38 Identities=21% Similarity=0.479 Sum_probs=26.4
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
..|..|.+.+. +. .+..-+..||..|. .|-.|+..|..
T Consensus 16 ~~C~~C~~~I~-~~--~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMT-GP--FMVAGEFKYHPECF--------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCC-SC--CBCCTTCCBCTTSC--------BCTTTCCBCCT
T ss_pred CcCccCCCCcC-ce--EEEECCceeccccC--------CccCCCCccCC
Confidence 35889988777 22 22335788888775 58889888853
No 179
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.54 E-value=2.7 Score=25.35 Aligned_cols=34 Identities=21% Similarity=0.617 Sum_probs=19.8
Q ss_pred ccCccccccccCCCceEEe--c---CCCcCCHHhHHHHH
Q psy5318 97 LQCSVCWEQFTLDEAVRKL--P---CDHFYHTPCIEPWL 130 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~l--p---C~H~Fh~~Ci~~wl 130 (176)
..|+-|...++..+....+ . |++.||..|..+|-
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 4588888877655422211 1 56666666666654
No 180
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=45.38 E-value=9.4 Score=27.47 Aligned_cols=47 Identities=19% Similarity=0.495 Sum_probs=30.5
Q ss_pred CCccCcccccccc--CCCceEEecCCCcCCHHhHHHHHhcCC--CCcccccc
Q psy5318 95 SNLQCSVCWEQFT--LDEAVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQT 142 (176)
Q Consensus 95 ~~~~C~IC~~~~~--~~~~~~~lpC~H~Fh~~Ci~~wl~~~~--~CP~CR~~ 142 (176)
.+..|.+|...|. .+....-..|.|.+|..|-. |..... .|-+|++.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHHH
Confidence 4567999999763 33333334599999999973 333222 47777653
No 181
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=44.78 E-value=3.5 Score=27.88 Aligned_cols=24 Identities=17% Similarity=0.646 Sum_probs=15.5
Q ss_pred cCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 116 PCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 116 pC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
.||+.|. .-+.....||.|+.+-.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 4888881 11234568999987654
No 182
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=44.27 E-value=20 Score=24.18 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=29.4
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
-..|..|...+..........=+..||..|..+-+.....|..|.+.+..
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred HcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 35577777766431111223356677777777654444478888887754
No 183
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=43.04 E-value=17 Score=26.30 Aligned_cols=31 Identities=16% Similarity=0.498 Sum_probs=22.0
Q ss_pred CccCccccccccCCCceEEec---CCCcCCHHhHHHHH
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLP---CDHFYHTPCIEPWL 130 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lp---C~H~Fh~~Ci~~wl 130 (176)
+..|.||-+. ..+.... |...||..||..++
T Consensus 79 ~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nv 112 (159)
T 3a1b_A 79 QSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLV 112 (159)
T ss_dssp BSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHT
T ss_pred cceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhc
Confidence 4558888753 2333333 88999999999886
No 184
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=42.49 E-value=6.1 Score=20.11 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=8.6
Q ss_pred CCCccccccccC
Q psy5318 134 GTCPICRQTLHS 145 (176)
Q Consensus 134 ~~CP~CR~~l~~ 145 (176)
..||+|+..++.
T Consensus 4 ~~CpvCk~q~Pd 15 (28)
T 2jvx_A 4 FCCPKCQYQAPD 15 (28)
T ss_dssp EECTTSSCEESS
T ss_pred ccCccccccCcC
Confidence 468999876654
No 185
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=42.21 E-value=9.5 Score=23.26 Aligned_cols=41 Identities=20% Similarity=0.400 Sum_probs=28.1
Q ss_pred ccCccccccccC---CCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 97 LQCSVCWEQFTL---DEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 97 ~~C~IC~~~~~~---~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..|..|.+.+.. ... .+..=+..||..|. +|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~~g~~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 59 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSS-VVAYEGQSWHDYCF--------HCKKCSVNLANK 59 (77)
T ss_dssp CCCSSSCCCCCCCSSCCC-EEEETTEEEETTTC--------BCSSSCCBCTTS
T ss_pred ccCcccCCcccCCCCCce-eEEECcceeCcccC--------EehhcCCCCCCC
Confidence 459999888774 222 23335778888875 699999888643
No 186
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=41.47 E-value=3.2 Score=24.87 Aligned_cols=42 Identities=24% Similarity=0.642 Sum_probs=25.1
Q ss_pred CCccCccccccccCCCceEEe-c--CC-CcCCHHhHHHHHhcC----CCCccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-P--CD-HFYHTPCIEPWLQLH----GTCPICRQ 141 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-p--C~-H~Fh~~Ci~~wl~~~----~~CP~CR~ 141 (176)
+...| ||.... .+ ..+.- . |. ..||..|+. |... -.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34457 897753 23 22222 2 55 699999997 3332 26999965
No 187
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=41.04 E-value=7.9 Score=26.49 Aligned_cols=39 Identities=21% Similarity=0.531 Sum_probs=28.8
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
...|.-|-+.+.... ++..-+..||..|. +|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~--~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRF--LLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSS--EEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcE--EEEeCCcEEccccc--------CcCcCCCccc
Confidence 356999998876442 23346788998885 6999999886
No 188
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=40.37 E-value=13 Score=23.82 Aligned_cols=46 Identities=11% Similarity=0.336 Sum_probs=27.6
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
-..|..|...+.... . ...=+..||..|..+ .....|..|.+.+..
T Consensus 33 CF~C~~C~~~L~~~~-~-~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 33 CFRCAKCLHPLANET-F-VAKDNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TCCCSSSCCCTTSSC-C-EEETTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred CCcccccCCCCCcCe-e-ECcCCEEEChhHhhh--hcCCccccCCCcccc
Confidence 456777777664321 1 122456777777643 234578888888763
No 189
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=39.50 E-value=3.5 Score=24.75 Aligned_cols=42 Identities=24% Similarity=0.623 Sum_probs=24.7
Q ss_pred CCccCccccccccCCCceEEe-c--CC-CcCCHHhHHHHHhcC----CCCccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-P--CD-HFYHTPCIEPWLQLH----GTCPICRQ 141 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-p--C~-H~Fh~~Ci~~wl~~~----~~CP~CR~ 141 (176)
+...| ||..... + ..+.- . |. ..||..|+. |... -.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34457 8977532 3 22222 2 44 689999997 4332 26999865
No 190
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=38.89 E-value=8.5 Score=20.47 Aligned_cols=14 Identities=14% Similarity=0.508 Sum_probs=10.4
Q ss_pred CccCccccccccCC
Q psy5318 96 NLQCSVCWEQFTLD 109 (176)
Q Consensus 96 ~~~C~IC~~~~~~~ 109 (176)
...||||+..+...
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 35699999887654
No 191
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=38.05 E-value=3.9 Score=24.76 Aligned_cols=42 Identities=24% Similarity=0.639 Sum_probs=25.0
Q ss_pred CCccCccccccccCCCceEEe-c--CC-CcCCHHhHHHHHhc----CCCCccccc
Q psy5318 95 SNLQCSVCWEQFTLDEAVRKL-P--CD-HFYHTPCIEPWLQL----HGTCPICRQ 141 (176)
Q Consensus 95 ~~~~C~IC~~~~~~~~~~~~l-p--C~-H~Fh~~Ci~~wl~~----~~~CP~CR~ 141 (176)
+...| ||.... .+ ..+.- . |. ..||..|+. |.. +-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34457 897753 23 22222 2 44 799999996 322 226999975
No 192
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=35.83 E-value=16 Score=26.62 Aligned_cols=40 Identities=25% Similarity=0.544 Sum_probs=26.1
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~ 145 (176)
...|..|.+.+...+.+. .-+..||..|. .|-.|+..|..
T Consensus 115 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 154 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVI--GAGKSWHKSCF--------RCAKCGKSLES 154 (192)
T ss_dssp CEECTTTSCEECSSSCEE--ETTEEECTTTC--------BCTTTCCBCCS
T ss_pred CCcCCCCCCEecCcEEEe--cCCCccchhcC--------CccccCCCCCC
Confidence 345888888776554443 34677887774 57777777654
No 193
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=35.73 E-value=16 Score=23.46 Aligned_cols=13 Identities=23% Similarity=0.792 Sum_probs=8.2
Q ss_pred ccCccccccccCC
Q psy5318 97 LQCSVCWEQFTLD 109 (176)
Q Consensus 97 ~~C~IC~~~~~~~ 109 (176)
..|+.|..++...
T Consensus 3 ~~CP~C~~~l~~~ 15 (81)
T 2jrp_A 3 ITCPVCHHALERN 15 (81)
T ss_dssp CCCSSSCSCCEEC
T ss_pred CCCCCCCCccccC
Confidence 3577777766544
No 194
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.57 E-value=15 Score=22.61 Aligned_cols=41 Identities=24% Similarity=0.544 Sum_probs=27.3
Q ss_pred ccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 97 ~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
..|..|.+.+...+.++ ..=+..||..|. .|-.|+..|...
T Consensus 16 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 2ehe_A 16 NTCAECQQLIGHDSREL-FYEDRHFHEGCF--------RCCRCQRSLADE 56 (82)
T ss_dssp CBCTTTCCBCCSSCCBC-CCSSCCCBTTTS--------BCTTTCCBCSSC
T ss_pred CcCccCCCccccCcEEE-EeCCccccccCC--------eecCCCCccCCC
Confidence 35999988877332222 225778888775 588898887643
No 195
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=35.24 E-value=6.7 Score=33.25 Aligned_cols=47 Identities=15% Similarity=0.391 Sum_probs=30.2
Q ss_pred cCccccccccCCCceEEec-CCCcCCHHhHHHH---Hh--cCCCCcccccccc
Q psy5318 98 QCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPW---LQ--LHGTCPICRQTLH 144 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lp-C~H~Fh~~Ci~~w---l~--~~~~CP~CR~~l~ 144 (176)
...||...+..+...+... |...||..|+.-- .. ..-.||.|+....
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 3558877664344445554 9999999999421 11 2347999987543
No 196
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=34.55 E-value=21 Score=23.94 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=32.7
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
-..|..|...+... .....=+..||..|..+. ....|..|.+++...
T Consensus 30 CF~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 30 HFCCFDCDSILAGE--IYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDPE 76 (126)
T ss_dssp GSBCTTTCCBCTTS--EEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCTT
T ss_pred CCCcCCCCCCCCcC--EEEeECCEEechHHhCcC--cCccCcccCCcCCcC
Confidence 46688888777532 233346778888888653 456899999998753
No 197
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=33.88 E-value=31 Score=28.58 Aligned_cols=42 Identities=21% Similarity=0.564 Sum_probs=27.1
Q ss_pred CccCccccccccCCCceEEe---cCCCcCCHHhHHHHHhc----------CCCCccccc
Q psy5318 96 NLQCSVCWEQFTLDEAVRKL---PCDHFYHTPCIEPWLQL----------HGTCPICRQ 141 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l---pC~H~Fh~~Ci~~wl~~----------~~~CP~CR~ 141 (176)
+..|.+|-+. ..+... .|...||..||..++-. .=.|=+|.-
T Consensus 93 ~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 93 QSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp BCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred cccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 4457777653 223333 48899999999998621 116887854
No 198
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=33.33 E-value=2.4 Score=26.99 Aligned_cols=14 Identities=21% Similarity=0.669 Sum_probs=12.2
Q ss_pred cCCCcCCHHhHHHH
Q psy5318 116 PCDHFYHTPCIEPW 129 (176)
Q Consensus 116 pC~H~Fh~~Ci~~w 129 (176)
.|++.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 48999999998887
No 199
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=32.02 E-value=3.5 Score=26.52 Aligned_cols=43 Identities=21% Similarity=0.603 Sum_probs=25.5
Q ss_pred CccccccccC--CCceEEec-CCCcCCHHhHHHHHhcCC--CCccccc
Q psy5318 99 CSVCWEQFTL--DEAVRKLP-CDHFYHTPCIEPWLQLHG--TCPICRQ 141 (176)
Q Consensus 99 C~IC~~~~~~--~~~~~~lp-C~H~Fh~~Ci~~wl~~~~--~CP~CR~ 141 (176)
|+-|...+.. +...+..+ |++.||..|-.+|=+.|. +|..-++
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~ 75 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQN 75 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHH
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHHHH
Confidence 6655443321 12335566 999999999988833333 5655433
No 200
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=31.69 E-value=22 Score=20.91 Aligned_cols=14 Identities=21% Similarity=0.544 Sum_probs=9.8
Q ss_pred CCccCccccccccC
Q psy5318 95 SNLQCSVCWEQFTL 108 (176)
Q Consensus 95 ~~~~C~IC~~~~~~ 108 (176)
+-..|++|...+..
T Consensus 9 ~iL~CP~c~~~L~~ 22 (56)
T 2kpi_A 9 EILACPACHAPLEE 22 (56)
T ss_dssp TSCCCSSSCSCEEE
T ss_pred hheeCCCCCCccee
Confidence 45679999887543
No 201
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=31.20 E-value=41 Score=20.21 Aligned_cols=34 Identities=12% Similarity=0.530 Sum_probs=27.5
Q ss_pred CccCccccccccCCCceEEec-CCCcCCH-HhHHHH
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLP-CDHFYHT-PCIEPW 129 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lp-C~H~Fh~-~Ci~~w 129 (176)
...|.-|...+..++....-. ..|.||. .||..+
T Consensus 20 ~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 20 KITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred ccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 456999999999888777665 8999987 688765
No 202
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=31.20 E-value=14 Score=21.80 Aligned_cols=40 Identities=23% Similarity=0.534 Sum_probs=27.2
Q ss_pred cCccccccccCCCceEEecCCCcCC--HHhHHHHHhcCCCCccccccccCC
Q psy5318 98 QCSVCWEQFTLDEAVRKLPCDHFYH--TPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC~H~Fh--~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
.|.-|.+.+...+. .+..-+..|| ..|. +|-.|+.+|...
T Consensus 4 ~C~~C~~~I~~~~~-~v~a~~~~wH~~~~CF--------~C~~C~~~L~~~ 45 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQ-RVTYNNFSWHASTECF--------LCSCCSKCLIGQ 45 (65)
T ss_dssp ECTTTSSEECTTSC-EEEETTEEEETTTTTS--------BCTTTCCBCTTS
T ss_pred CCcCCCCeeccCce-EEEECCCccCCCCCCE--------ECCCCCCcCCCC
Confidence 48888888775322 2233578888 8775 688898888543
No 203
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=30.66 E-value=11 Score=24.33 Aligned_cols=32 Identities=19% Similarity=0.494 Sum_probs=20.2
Q ss_pred CccCccccccccCCCceEEe---cCCCcCCHHhHHHH
Q psy5318 96 NLQCSVCWEQFTLDEAVRKL---PCDHFYHTPCIEPW 129 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~l---pC~H~Fh~~Ci~~w 129 (176)
.+.|.||.+.- .+-. +.. .|.-.||..|...-
T Consensus 17 ~l~C~iC~~~~-~GAc-iqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQKG-VGAS-IQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBCC-SSCE-EECSCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCCC-CcEe-EecCCCCCCCcCcHHHHHHC
Confidence 35699996531 1211 222 38999999998763
No 204
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=30.06 E-value=13 Score=18.45 Aligned_cols=11 Identities=36% Similarity=1.213 Sum_probs=7.4
Q ss_pred CCccccccccC
Q psy5318 135 TCPICRQTLHS 145 (176)
Q Consensus 135 ~CP~CR~~l~~ 145 (176)
.||+|.+.++.
T Consensus 8 qcpvcqq~mpa 18 (29)
T 3vhs_A 8 QCPVCQQMMPA 18 (29)
T ss_dssp ECTTTCCEEEG
T ss_pred eChHHHHhCcH
Confidence 58888776553
No 205
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.88 E-value=28 Score=23.04 Aligned_cols=37 Identities=8% Similarity=-0.020 Sum_probs=20.5
Q ss_pred CCccCccccccccC-CCceEEecCCCcCCHHhHHHHHhc
Q psy5318 95 SNLQCSVCWEQFTL-DEAVRKLPCDHFYHTPCIEPWLQL 132 (176)
Q Consensus 95 ~~~~C~IC~~~~~~-~~~~~~lpC~H~Fh~~Ci~~wl~~ 132 (176)
+-..|..|...+.. +... ...=+..||..|..+-+..
T Consensus 29 ~CF~C~~C~~~L~~~g~~~-~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCC-CCBTTBCCCHHHHHHHHTS
T ss_pred hcCcccccCCchhcCCCee-EEECCeeechHHHHHHhCc
Confidence 34567777776653 1111 1224667888887665443
No 206
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=28.45 E-value=27 Score=25.38 Aligned_cols=38 Identities=34% Similarity=0.718 Sum_probs=17.9
Q ss_pred cCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCcccccccc
Q psy5318 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144 (176)
Q Consensus 98 ~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~ 144 (176)
.|..|.+.+...+.+ +..-++.||..|. +|-.|++.|.
T Consensus 71 ~C~~C~~~I~~~e~~-i~a~~~~~H~~CF--------~C~~C~~~L~ 108 (188)
T 1rut_X 71 ACSACGQSIPASELV-MRAQGNVYHLKCF--------TCSTCRNRLV 108 (188)
T ss_dssp ECTTTCCEECTTSEE-EEETTEEECGGGC--------BCTTTCCBCC
T ss_pred ccccCCCccccCcEE-EEcCCCEEeCCCC--------eECCCCCCCC
Confidence 355555544432211 1124555665553 4666666553
No 207
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.84 E-value=8.2 Score=23.87 Aligned_cols=26 Identities=19% Similarity=0.525 Sum_probs=17.2
Q ss_pred CcCCHHhHHHHH--hcCCCCcccccccc
Q psy5318 119 HFYHTPCIEPWL--QLHGTCPICRQTLH 144 (176)
Q Consensus 119 H~Fh~~Ci~~wl--~~~~~CP~CR~~l~ 144 (176)
..||..|+.--- ...-.||.|+....
T Consensus 30 ~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 30 EWFHYGCVGLTEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CCEEHHHHTCSSCCSSCCCCHHHHHHHH
T ss_pred cCCcccccccCcCCCCCEECCCCCcccc
Confidence 689999996211 11226999987653
No 208
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=24.01 E-value=39 Score=24.28 Aligned_cols=46 Identities=15% Similarity=0.274 Sum_probs=27.7
Q ss_pred CccCccccccccCCCceEEecCCCcCCHHhHHHHHhcCCCCccccccccCC
Q psy5318 96 NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 96 ~~~C~IC~~~~~~~~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~l~~~ 146 (176)
-..|..|...+.... . ..=+..||..|..+ .....|..|...+...
T Consensus 87 CF~C~~C~~~L~~~~--f-~~~g~~yC~~~y~~--~f~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 87 CLKCSDCHVPLAERC--F-SRGESVYCKDDFFK--RFGTKCAACQLGIPPT 132 (182)
T ss_dssp TTSCTTTCCCCSSCC--E-EETTEEECHHHHHH--TTSCCCTTTCCCCCSS
T ss_pred cCccCCCCCccCCCc--e-eECCEeeecCcccc--ccccccccCCCccCCC
Confidence 345666666665432 1 22456777777654 2445799998887653
No 209
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.60 E-value=16 Score=22.56 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=11.9
Q ss_pred HHhcCCCCccccccccCC
Q psy5318 129 WLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 129 wl~~~~~CP~CR~~l~~~ 146 (176)
||..--.||.|+.++...
T Consensus 4 ~LLeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 4 KLLDILACPICKGPLKLS 21 (69)
T ss_dssp CGGGTCCCTTTCCCCEEC
T ss_pred HHHhheeCCCCCCcCeEe
Confidence 444455788888877643
No 210
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=21.83 E-value=81 Score=20.06 Aligned_cols=40 Identities=28% Similarity=0.465 Sum_probs=27.0
Q ss_pred CccCccccccccCC---CceEEecCCCcCCHHhHHHHHhcCCCCcc
Q psy5318 96 NLQCSVCWEQFTLD---EAVRKLPCDHFYHTPCIEPWLQLHGTCPI 138 (176)
Q Consensus 96 ~~~C~IC~~~~~~~---~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~ 138 (176)
...|.+|.+..... ...+-+-|+-.+|..|+... ...|++
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~---~~eC~l 80 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL---LTKCSG 80 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC---CSCBCC
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc---cCcCCC
Confidence 45699998864432 23344459999999999874 445664
No 211
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.96 E-value=7.9 Score=31.14 Aligned_cols=44 Identities=18% Similarity=0.452 Sum_probs=27.0
Q ss_pred CCCccCccccccccCC--------CceEEecCCCcCCHHhHHHHHhcCCCCcccccc
Q psy5318 94 DSNLQCSVCWEQFTLD--------EAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQT 142 (176)
Q Consensus 94 ~~~~~C~IC~~~~~~~--------~~~~~lpC~H~Fh~~Ci~~wl~~~~~CP~CR~~ 142 (176)
.....|++|-..-... +..+ +.+|..|-..|--....||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R-----~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLR-----YLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEE-----EEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcE-----EEEeCCCCCEEeecCcCCcCCCCC
Confidence 3456799997743211 2222 344455666776667789999775
No 212
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.29 E-value=16 Score=22.42 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=11.8
Q ss_pred HHHhcCCCCccccccccCC
Q psy5318 128 PWLQLHGTCPICRQTLHSE 146 (176)
Q Consensus 128 ~wl~~~~~CP~CR~~l~~~ 146 (176)
+||..--.||+|+.++...
T Consensus 5 ~~LLeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRYL 23 (67)
T ss_dssp GGGTCCCBCTTTCCBCEEE
T ss_pred HHHHHHhCCCCCCCcCeEe
Confidence 3444455688888877543
Done!