RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5318
(176 letters)
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 110 bits (278), Expect = 1e-32
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 65 NQMDGSGPPPLSTDKIKQIPVAHITKAQ--IDSNLQCSVCWEQFTLDEAVRKLPCDHFYH 122
+ PP S + I +P +T+ + + C +C ++ + +LPC H++H
Sbjct: 7 HHSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFH 66
Query: 123 TPCIEPWLQLHGTCPICRQTL 143
PC+ WLQ GTCP+CR
Sbjct: 67 KPCVSIWLQKSGTCPVCRCMF 87
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 99.8 bits (249), Expect = 2e-28
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 86 AHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL-- 143
+ T+ + S L+C VC E + L E+VR+LPC+H +H CI PWL+ H +CP+CR++L
Sbjct: 5 SSGTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64
Query: 144 HSESAESLGPAGAG 157
+ + G G G
Sbjct: 65 QNTATNPPGLTGVG 78
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 88.9 bits (221), Expect = 4e-24
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 76 STDKIKQIPVAHITKAQIDS-NLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG 134
S+ Q+P S C VC F + +R LPC+H +H C++ WL+ +
Sbjct: 2 SSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR 61
Query: 135 TCPICRQTLHSESA 148
TCPICR S
Sbjct: 62 TCPICRADSGPSSG 75
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 87.5 bits (217), Expect = 1e-23
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 89 TKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148
+++ + C+VC E F + + PC H +H C+ WL++ CP+C + +
Sbjct: 8 KVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67
Query: 149 ESLGPAG 155
S +G
Sbjct: 68 LSGPSSG 74
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 86.3 bits (214), Expect = 3e-23
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAES 150
D+ +C++C E VR+LPC H +H C++ WL + CPICR + ++
Sbjct: 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSE 68
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 77.4 bits (191), Expect = 9e-20
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 89 TKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESA 148
Q+ +C +C + A LPC H + CI+ W H CPICR + +
Sbjct: 8 RVKQLTDEEECCICMD----GRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63
Query: 149 ESLGPAG 155
S +G
Sbjct: 64 SSGPSSG 70
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 75.3 bits (186), Expect = 4e-19
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 93 IDSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTL 143
+D ++C+VC + E R LP C H +H C++ WL H TCP+CR T+
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 70.4 bits (173), Expect = 3e-17
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 94 DSNLQCSVCWEQ-FTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 143
+ C +C E T LPC H H C E L+ CP+C
Sbjct: 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 68.6 bits (168), Expect = 3e-16
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145
+C +C E + LPC H + CI W++ + TCP+C+ + S
Sbjct: 7 RCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 63.8 bits (155), Expect = 2e-14
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 94 DSNLQCSVCWEQFT----LDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146
+ C +C + ++ + C H + + C+ L+ TCP CR+ ++ +
Sbjct: 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 61.8 bits (150), Expect = 1e-13
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 89 TKAQIDSNLQCSVCWEQFT----LDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLH 144
T + + C +C + ++ + C H + + C+ L+ TCP CR+ ++
Sbjct: 3 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62
Query: 145 SES 147
+
Sbjct: 63 HKR 65
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 60.2 bits (146), Expect = 4e-13
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 95 SNLQCSVCWEQFT----LDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147
+ + C +C + ++ + C H + + C+ L+ TCP CR+ ++ +
Sbjct: 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 60.3 bits (146), Expect = 5e-13
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 99 CSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTL 143
C C + ++ V C+H +H C+ W++ + CP+C+Q
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 57.6 bits (139), Expect = 9e-12
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 3/68 (4%)
Query: 81 KQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPIC 139
+ + I +C +C E+ +A C CI WL CP C
Sbjct: 7 HHSHMDEQSVESIAEVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHC 64
Query: 140 RQTLHSES 147
R L
Sbjct: 65 RAPLQLRE 72
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 55.9 bits (135), Expect = 2e-11
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 91 AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145
+++ + CS+C +A C H + CI CP C +H
Sbjct: 10 SELTPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 57.0 bits (137), Expect = 6e-11
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 56 LDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKL 115
+AI+ +++ + K+ ++H+ +++ LQC +C E F EAV L
Sbjct: 25 FEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDV-LENELQCIICSEYFI--EAVT-L 80
Query: 116 PCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147
C H + + CI W++ CPICR+ + S++
Sbjct: 81 NCAHSFCSYCINEWMKRKIECPICRKDIKSKT 112
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 55.6 bits (134), Expect = 6e-11
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 91 AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145
+++ +L C +C F +A + C H + CI +L+ CPIC +H
Sbjct: 10 TELNPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 51.0 bits (122), Expect = 2e-09
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGP 153
+ +C++C + V LPC H + C++ L C +CRQ + + +S
Sbjct: 13 LTVPECAICLQTCV--HPVS-LPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSGPS 69
Query: 154 AG 155
+G
Sbjct: 70 SG 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 54.5 bits (130), Expect = 2e-09
Identities = 28/166 (16%), Positives = 47/166 (28%), Gaps = 34/166 (20%)
Query: 14 SSKRTRRTLSASVGVSLANPEFAPLLP--HFEGNPGDYAWGREGLDA----------IVT 61
++ + +++A+P G + A R L I
Sbjct: 220 KTRLFPLKDRVYLKLTIADPFACIASMSLKIIGPTEEVARLRHVLSDGLSNWDSEMNIHK 279
Query: 62 QLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCD--- 118
LL D P + + L+C++C+ V + CD
Sbjct: 280 NLLRMFDLCYFPM------PDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAK 333
Query: 119 --HFYHTPCIEPWLQ-----------LHGTCPICRQTLHSESAESL 151
H C+E W + G CP C+ L + A L
Sbjct: 334 CVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFAALL 379
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 50.9 bits (122), Expect = 3e-09
Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 67 MDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCI 126
MD ID L+C +C+E F A+ C H Y + CI
Sbjct: 1 MDSLAESRWPPGLAVM--------KTIDDLLRCGICFEYFN--IAMIIPQCSHNYCSLCI 50
Query: 127 EPWLQLHGTCPICRQTLHSES 147
+L CP C T+
Sbjct: 51 RKFLSYKTQCPTCCVTVTEPD 71
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 53.6 bits (128), Expect = 4e-09
Identities = 23/91 (25%), Positives = 30/91 (32%), Gaps = 13/91 (14%)
Query: 67 MDGSGPPPLSTDKIKQIPVAHITKAQ---------IDSNLQCSVCWEQFTLDEAVRKLPC 117
DG P T + P HI Q + C +C E V+ PC
Sbjct: 294 PDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDK---DVKIEPC 350
Query: 118 DHFYHTPCIEPWLQLHG-TCPICRQTLHSES 147
H T C+ W + G CP CR +
Sbjct: 351 GHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 49.5 bits (118), Expect = 8e-09
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141
+ +C +C + F V C H++ C + C IC Q
Sbjct: 13 EIPFRCFICRQAFQ--NPVV-TKCRHYFCESCALEHFRATPRCYICDQ 57
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 49.5 bits (117), Expect = 1e-08
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141
+ + + V C+H +H CI WL+ CP+ +
Sbjct: 65 CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 108
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 48.5 bits (116), Expect = 2e-08
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 92 QIDSNLQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSES 147
+ L+C +C E FT ++ K L C H C+E L CP C + S
Sbjct: 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70
Query: 148 AESL 151
L
Sbjct: 71 LTQL 74
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 48.3 bits (114), Expect = 3e-08
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 102 CWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141
+ + V C+H +H CI WL+ CP+ +
Sbjct: 58 QASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 97
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 48.6 bits (115), Expect = 5e-08
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 91 AQIDSNLQCSVCWEQFTLDEAVRK----LPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146
A + C +C + ++ + C H + + C+ L+ TCP CR+ ++ +
Sbjct: 2 AMGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61
Score = 42.1 bits (98), Expect = 1e-05
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 77 TDKIKQIPVAHITKAQIDSNLQCSVCWEQFT----LDEAVRKLPCDHFYHTPCIEPWLQL 132
T + K + + C +C + ++ + C H + + C+ L+
Sbjct: 53 TCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 112
Query: 133 HGTCPICRQTL 143
TCP CR+ +
Sbjct: 113 ANTCPTCRKKI 123
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 46.8 bits (111), Expect = 6e-08
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQ 141
D+ C++C + C H PC+ + Q + CP C
Sbjct: 13 DAVKICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 60
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 45.1 bits (107), Expect = 3e-07
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 89 TKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQTLHS 145
I L C +C + T +AV C + Y CI L TCP C Q S
Sbjct: 8 EDDPIPDELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 45.6 bits (108), Expect = 5e-07
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSES 147
++S +C +C L EAV+ PC H + CI ++ G CP+ + L
Sbjct: 14 PLESKYECPIC--LMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 46.2 bits (109), Expect = 6e-07
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSE 146
++S +C +C L EAV+ PC H + CI ++ G CP+ + L
Sbjct: 14 PLESKYECPIC--LMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 45.3 bits (107), Expect = 6e-07
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 91 AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHS 145
++++ QC C E + C H C++ + +CP CR L
Sbjct: 47 SKVEETFQCICCQELVF--RPIT-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 46.7 bits (110), Expect = 8e-07
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQTLHSESAESL 151
D+ C++C + C H PC+ + Q + CP C E +
Sbjct: 178 DAVKICNICHSLLI--QGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKVF 235
Query: 152 GP 153
P
Sbjct: 236 DP 237
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 44.8 bits (105), Expect = 8e-07
Identities = 14/93 (15%), Positives = 26/93 (27%), Gaps = 24/93 (25%)
Query: 70 SGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTL---------------DEAVRK 114
SG I++ + + ++ C +C E+ + R
Sbjct: 3 SGSSGEPEQVIRK----YTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRL 58
Query: 115 LPCDHFYHTPCIEPWLQ-----LHGTCPICRQT 142
C H +H C+ CP C+
Sbjct: 59 TKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 43.6 bits (103), Expect = 1e-06
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 90 KAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQTLHSES 147
I L C +C + T +AV C + Y CI L TCP C Q S
Sbjct: 7 DDPIPDELLCLICKDIMT--DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN--DVS 62
Query: 148 AESLGP 153
++L
Sbjct: 63 PDALIA 68
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc
binuclear cluster, zinc finger, DNA-binding protein;
2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Length = 116
Score = 44.1 bits (104), Expect = 1e-06
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 91 AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSE 146
A ++ C +C + L + V C H + CI L++ G CP CR
Sbjct: 18 AHFVKSISCQIC--EHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 42.9 bits (101), Expect = 2e-06
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSES 147
++ +C C L + C H + C+ L C C++++ +
Sbjct: 11 TVEDKYKCEKCHL--VLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 43.7 bits (103), Expect = 2e-06
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSESAESLGP 153
QC +C E E V LPC+H PC + ++ CP CR+ + S +
Sbjct: 16 CQCGICMEILV--EPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRR 70
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 3e-06
Identities = 44/201 (21%), Positives = 61/201 (30%), Gaps = 62/201 (30%)
Query: 1 ML---GSTQLAIPDWLSSKRTRRTLSAS--VGVSLAN-PEFAPLLPHF--EGNPGDYAWG 52
ML TQ + D++ +T L A V +SL N + + G P
Sbjct: 338 MLSISNLTQEQVQDYV--NKTNSHLPAGKQVEISLVNGAK------NLVVSGPPQS---- 385
Query: 53 REGLDAIVTQLLNQMDGSGPP----PLSTDKIKQI----PVA---H-----ITKAQIDSN 96
L + L SG P S K+K PVA H I+ +
Sbjct: 386 ---LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 97 LQC-SVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCP------ICRQTLHSESAE 149
L +V + + V Y T L G+ I R + E+
Sbjct: 443 LVKNNVSFNAKDIQIPV--------YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 150 S--------LGPAGAGGPGGL 162
GP GA G G L
Sbjct: 495 QFKATHILDFGPGGASGLGVL 515
Score = 26.2 bits (57), Expect = 7.5
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 30/69 (43%)
Query: 47 GDYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQF 106
GD LD VT +LN + K+++I + + +
Sbjct: 1857 GD----LRALDT-VTNVLNFI-----------KLQKIDIIELQ--------------KSL 1886
Query: 107 TLDEAVRKL 115
+L+E L
Sbjct: 1887 SLEEVEGHL 1895
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase;
1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB:
1n87_A
Length = 61
Score = 41.2 bits (97), Expect = 6e-06
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 95 SNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146
S++ C++ + V + +E +++ G PI + L E
Sbjct: 2 SHMLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 42.6 bits (100), Expect = 6e-06
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 91 AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQT 142
+++ L+CS C E V C+H + + C+ + CP+C
Sbjct: 17 DRLEKLLRCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTP 64
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 40.8 bits (96), Expect = 6e-06
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141
L+C C + + LPC H + C+E CPIC+
Sbjct: 7 LRCQQCQAEAK---CPKLLPCLHTLCSGCLE---ASGMQCPICQA 45
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 40.9 bits (95), Expect = 1e-05
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 94 DSNLQCSVCWEQFTL-DEAVRKLPCDHFYHTPCIEPWL-QLHGTCPICRQTLHSESAE 149
+ ++C +C E + D C + C +G CP CR+ + A
Sbjct: 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 42.4 bits (99), Expect = 1e-05
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 69 GSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEP 128
S PP S + ++ + ++++ CS C + L + C H Y + C+
Sbjct: 4 ASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSAC--RNVLRRPFQ-AQCGHRYCSFCLAS 60
Query: 129 WLQLHG-TCPICRQTLHSE 146
L C C E
Sbjct: 61 ILSSGPQNCAACVHEGIYE 79
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 41.1 bits (96), Expect = 3e-05
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 91 AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHS 145
+++ + C C E + V C H C++ + +CP CR L
Sbjct: 73 KKLEQSFMCVCCQELVY--QPV-TTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 41.5 bits (97), Expect = 3e-05
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 88 ITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSE 146
++ + S L C +C + + C H + CI L+ CP CR+ L S+
Sbjct: 46 VSPRSLHSELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 40.3 bits (93), Expect = 1e-04
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 91 AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT--CPI--CRQTLHSE 146
L C + + + + C+H + I+ +LQ + T CP C Q +
Sbjct: 176 EGGKIELTCPITCKPYE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233
Query: 147 S 147
Sbjct: 234 D 234
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 37.8 bits (88), Expect = 3e-04
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSES 147
L+C +C E E V CDH + C+ L CP+C+ + S
Sbjct: 22 LECPICLELIK--EPV-STKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 37.0 bits (86), Expect = 3e-04
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT---CPICRQTLHSES 147
+ C +C + + V + C H + CI + CP+C+ ++ +
Sbjct: 21 VICPICLDILQ--KPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 36.8 bits (85), Expect = 4e-04
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 99 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLH 133
C +C ++ +++ C + T C++ +++L
Sbjct: 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL 42
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 35.2 bits (81), Expect = 0.001
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 99 CSVCWEQFTLDEAVRKLPCDHFYH-TPCIEPWLQLHGTCPICRQ 141
CS+C ++ D + H C + +CPIC++
Sbjct: 10 CSLCEKRPR-DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKK 52
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 34.5 bits (79), Expect = 0.002
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 96 NLQCSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPWLQLH-GTCPICRQTL 143
+ C C + +++ + C H C++ G CP C L
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 34.3 bits (79), Expect = 0.003
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT------CPICRQTLHSES 147
+ C +C E E V C+H + CI + + CP+CR +
Sbjct: 20 VTCPICLELLK--EPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 33.8 bits (78), Expect = 0.004
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 10/53 (18%)
Query: 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT-------CPICRQT 142
+ C +C E T E + L C H CI + T CP+C +
Sbjct: 13 VTCPICLELLT--EPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGIS 62
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin
ligase, E4 polyubiquitin chain EL factor,
phosphoprotein, UBL conjugation pathway; NMR {Homo
sapiens} PDB: 3l1x_A 3l1z_B
Length = 100
Score = 33.2 bits (76), Expect = 0.010
Identities = 10/32 (31%), Positives = 10/32 (31%)
Query: 115 LPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146
LP I L T P RQTL
Sbjct: 45 LPSGTIMDRSIILRHLLNSPTDPFNRQTLTES 76
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace
motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Length = 60
Score = 32.0 bits (73), Expect = 0.011
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 10/52 (19%)
Query: 98 QCSVCWEQFTLDEAVRKLPCD-----HFYHTPCIEPWLQLHG--TCPICRQT 142
C +C E+ R C H C+ WL + C IC
Sbjct: 8 VCWICNEE---LGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation,
alternative splicing, HOST-virus interaction, UBL
conjugation pathway, zinc-finger, polymorphism; HET:
FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Length = 64
Score = 32.1 bits (73), Expect = 0.011
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYH-TPCIEPWLQLHGTCPICRQ 141
+++ C +C + + + H C + + + CP+CRQ
Sbjct: 4 PLNAIEPCVICQGRPK-NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQ 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase,
UBL conjugation pathway; NMR {Mus musculus}
Length = 85
Score = 32.7 bits (75), Expect = 0.013
Identities = 9/32 (28%), Positives = 9/32 (28%)
Query: 115 LPCDHFYHTPCIEPWLQLHGTCPICRQTLHSE 146
LP I L T P RQ L
Sbjct: 30 LPSGTVMDRSIILRHLLNSPTDPFNRQMLTES 61
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 32.2 bits (73), Expect = 0.016
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 98 QCSVCWEQFTLDEAVRKLPCD-----HFYHTPCIEPWLQLHG--TCPICRQTLHSE 146
C +C + + + PC HF H C++ W++ C +C+ E
Sbjct: 17 ICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 34.0 bits (77), Expect = 0.021
Identities = 9/33 (27%), Positives = 10/33 (30%), Gaps = 1/33 (3%)
Query: 115 LPCDHF-YHTPCIEPWLQLHGTCPICRQTLHSE 146
LP I+ L T P R L E
Sbjct: 907 LPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 31.1 bits (71), Expect = 0.038
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWL------QLHGTCPICRQT 142
+ C +C E T + + L C H + C+ + +CP+CR +
Sbjct: 20 VTCPICLELLT--QPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRIS 68
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 29.7 bits (67), Expect = 0.082
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT---CPIC 139
+ C +C + + V + C H + CI + CP+C
Sbjct: 21 VICPICLDILQ--KPVT-IDCGHNFCLKCITQIGETSCGFFKCPLC 63
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 58
Score = 29.6 bits (67), Expect = 0.083
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT---CPIC 139
CSVC E E V + C H + CI W + CP+C
Sbjct: 16 ASCSVCLEYLK--EPVI-IECGHNFCKACITRWWEDLERDFPCPVC 58
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 30.1 bits (68), Expect = 0.10
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQT 142
++ + C VC E+ + PC H C QL +CP+CR
Sbjct: 14 KLKEAMLCMVCCEE---EINSTFCPCGHT--VCCESCAAQLQ-SCPVCRSR 58
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 29.8 bits (66), Expect = 0.17
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 99 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQL-HGTCPICRQTLH 144
C C + R +PC H + C + CP C +
Sbjct: 4 CDKC--GLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 28.6 bits (64), Expect = 0.30
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQT 142
++ C +C ++ + A+ +PC H C + + CP+C
Sbjct: 21 RLQEEKLCKICMDR---NIAIVFVPCGHL--VTCKQCAEAVD-KCPMCYTV 65
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.2
Length = 98
Score = 29.0 bits (65), Expect = 0.33
Identities = 8/33 (24%), Positives = 9/33 (27%), Gaps = 1/33 (3%)
Query: 115 LPCDHF-YHTPCIEPWLQLHGTCPICRQTLHSE 146
LP I L T P R L +
Sbjct: 38 LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.50
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 16 KRTRRTLSASVGVSLANPEFAPLL 39
K+ + L AS+ L + AP L
Sbjct: 19 KQALKKLQASL--KLYADDSAPAL 40
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin
ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana}
SCOP: g.44.1.2
Length = 78
Score = 27.9 bits (63), Expect = 0.52
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 125 CIEPWLQL-HGTCPICRQTLHS 145
I+ WL H TCP ++TL
Sbjct: 34 SIQKWLDAGHKTCPKSQETLLH 55
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 29.6 bits (64), Expect = 0.61
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQT 142
++ C VC ++ + +V +PC H C E L CPICR
Sbjct: 291 RLQEERTCKVCMDK---EVSVVFIPCGHL--VVCQECAPSLR-KCPICRGI 335
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 28.4 bits (63), Expect = 0.68
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQ 131
S C+VC L + C YH C++ +
Sbjct: 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVT 42
Score = 26.1 bits (57), Expect = 4.3
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 117 CDHFYHTPCIEPWL----QLHGTCPICR 140
CD YHT C++P + C CR
Sbjct: 75 CDKGYHTFCLQPVMKSVPTNGWKCKNCR 102
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 27.1 bits (60), Expect = 0.94
Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
Query: 94 DSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145
+++ C VC LPC H C CP+CRQ +
Sbjct: 13 ENSKDCVVCQNG---TVNWVLLPCRHT--CLCDGCVKYFQ-QCPMCRQFVQE 58
>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A
{Candida albicans} SCOP: b.82.1.3
Length = 440
Score = 28.7 bits (63), Expect = 0.95
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 48 DYAWGREGLDAIVTQLLNQMDGSGPPP 74
+Y WG+ G + V Q ++ D S
Sbjct: 14 NYDWGKIGSSSAVAQFVHNSDPSITID 40
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of
EIF4E, cytoplasm, HOST-virus interaction, lipoprotein,
membrane; NMR {Lassa virus josiah}
Length = 99
Score = 27.4 bits (60), Expect = 1.2
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSESAESLGPA 154
C CW F V +H+ C+ L + CPIC+ L ++ S P
Sbjct: 29 QFCKSCW--FENKGLVE--CNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAPT 82
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 28.2 bits (62), Expect = 1.3
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 117 CDHFYHTPCIEPWLQ---LHGT--CPICRQ 141
CD +H C++P L CP CR
Sbjct: 195 CDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 26.5 bits (58), Expect = 2.0
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 10/60 (16%)
Query: 91 AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG------TCPI--CRQT 142
+ S C + E+ + V+ C H Y I ++ CP C T
Sbjct: 2 SSGSSGFTCPITKEEMK--KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 25.9 bits (57), Expect = 2.0
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 117 CDHFYHTPCIEPWLQL--HGT--CPICRQTLHSE 146
C YH C++P L+ G CP C+ + +
Sbjct: 23 CSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK 56
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 26.6 bits (59), Expect = 2.7
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 37 PLLPHFEG--NPGDYAWGREGLDAIVTQLLNQMDGSGPPP 74
P + F+ +P DY GR IV++ L+ + PPP
Sbjct: 85 PTIKIFQKGESPVDYDGGRT-RSDIVSRALDLFSDNAPPP 123
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 26.6 bits (58), Expect = 2.9
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 14/41 (34%)
Query: 117 CDHFYHTPCIEP---------WLQLHGTCPICRQTLHSESA 148
CD YH C+ P W C +C + L +++
Sbjct: 79 CDRGYHMYCLNPPVAEPPEGSWS-----CHLCWELLKEKAS 114
Score = 25.8 bits (56), Expect = 4.8
Identities = 8/66 (12%), Positives = 17/66 (25%), Gaps = 17/66 (25%)
Query: 99 CSVCWEQFTLDEAVRKL----PCDHFYHTPCIEPWLQL-------------HGTCPICRQ 141
C +L C H C++ L + +C +C
Sbjct: 7 CLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGT 66
Query: 142 TLHSES 147
+ + +
Sbjct: 67 SENDDQ 72
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 27.5 bits (61), Expect = 2.9
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 57 DAIVTQLLNQMDG 69
D ++ Q+L +MDG
Sbjct: 598 DRVINQILTEMDG 610
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE]
hydrogenase maturation, zinc-finger, nickel binding,
metal-binding; HET: FME; 2.30A {Pyrococcus
kodakaraensis} PDB: 3a44_A*
Length = 139
Score = 26.5 bits (58), Expect = 3.1
Identities = 11/54 (20%), Positives = 18/54 (33%)
Query: 86 AHITKAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPIC 139
A I + ++ +C C ++ L E K I + CP C
Sbjct: 60 AEIEFVEEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKC 113
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 27.2 bits (61), Expect = 3.2
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 59 IVTQLLNQMDG 69
+ QLL +MDG
Sbjct: 140 TLMQLLAEMDG 150
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain,
protein-inhibitor complex,
oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A
{Sus scrofa}
Length = 573
Score = 27.1 bits (59), Expect = 3.6
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 18 TRRTLSASVGVSLANPEFAPLLPHFEGNPGDYAWGREGL 56
T R L + +P F L+PHF R GL
Sbjct: 286 TMRCLPSI------HPIFKLLIPHFRYTMEINVRARNGL 318
>2w57_A Ferric uptake regulation protein; gene regulation, transcription
regulation, transport, iron, repressor, DNA-binding,
transcription; 2.60A {Vibrio cholerae}
Length = 150
Score = 26.5 bits (59), Expect = 4.1
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 130 LQLHGTCPICRQTLHSESAE 149
L L+G C + +A
Sbjct: 127 LYLYGKCGSDGSCKDNPNAH 146
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 27.1 bits (61), Expect = 4.2
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 6/24 (25%)
Query: 97 LQCSVCW--EQFTLDE----AVRK 114
L S W E FT+DE AVR
Sbjct: 132 LGASADWSREAFTMDEKRSRAVRY 155
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 25.7 bits (56), Expect = 4.4
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 14/45 (31%)
Query: 117 CDHFYHTPCIEP---------WLQLHGTCPICRQTLHSESAESLG 152
CD YH C+ P W CP C + E+ G
Sbjct: 37 CDDNYHIFCLLPPLPEIPRGIWR-----CPKCILAECKQPPEAFG 76
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 24.6 bits (54), Expect = 4.4
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 117 CDHFYHTPCIEPWLQL--HGT--CPICRQ 141
C YH C++P L+ G CP C+
Sbjct: 27 CSRVYHLDCLDPPLKTIPKGMWICPRCQD 55
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 26.8 bits (60), Expect = 4.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 57 DAIVTQLLNQMDG 69
+V QLL +MDG
Sbjct: 128 VRVVNQLLTEMDG 140
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation,
UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo
sapiens}
Length = 77
Score = 25.2 bits (55), Expect = 4.7
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 117 CDHFYHTPCIEPWLQ---LHGT--CPICRQ 141
CD +H C++P L CP CR
Sbjct: 47 CDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex; 1.41A
{Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A
2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 25.2 bits (55), Expect = 4.8
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 117 CDHFYHTPCIEPWLQ---LHGT--CPICRQ 141
CD +H C++P L CP CR
Sbjct: 39 CDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 26.4 bits (59), Expect = 5.5
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 57 DAIVTQLLNQMDG 69
D ++ Q+L +MDG
Sbjct: 136 DRVINQILTEMDG 148
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 24.8 bits (54), Expect = 5.6
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 117 CDHFYHTPCIEPWLQLHGT----CPICRQ 141
CD +YH PC+ CP C
Sbjct: 39 CDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67
>2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS,
non-ribosomal peptide synthetase, type II thioesterase,
antibiotic biosynthesis; NMR {Bacillus subtilis} PDB:
2ron_A
Length = 242
Score = 26.3 bits (58), Expect = 5.7
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 103 WEQFTLDEAVRKLPCDHFYHTPCIEPWLQL 132
W+++ D + H + E +
Sbjct: 200 WKKWAKDITFHQFDGGHMFLLSQTEEVAER 229
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 24.2 bits (53), Expect = 6.6
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 14/33 (42%)
Query: 117 CDHFYHTPCIEP---------WLQLHGTCPICR 140
C+ +H C+ P W CP C+
Sbjct: 21 CNKAFHLFCLRPALYEVPDGEWQ-----CPACQ 48
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 26.3 bits (58), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 54 EGLDAIVTQLLNQMDGSG 71
E I T+LL QM+G G
Sbjct: 165 EASRRIKTELLVQMNGVG 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 26.2 bits (58), Expect = 6.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 54 EGLDAIVTQLLNQMDGSG 71
E I T+LL QM+G G
Sbjct: 132 EASRRIKTELLVQMNGVG 149
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 26.1 bits (57), Expect = 6.7
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 54 EGLDAIVTQLLNQMDGSG 71
E I T+ L QM G G
Sbjct: 249 EAARRIKTEFLVQMQGVG 266
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 24.2 bits (53), Expect = 7.2
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 13/34 (38%)
Query: 117 CDHFYHTPCI--------EPWLQLHGTCPICRQT 142
C + H C E ++ C CR +
Sbjct: 24 CHTWIHLSCAKIRKSNVPEVFV-----CQKCRDS 52
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 25.0 bits (54), Expect = 7.4
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 12/60 (20%)
Query: 93 IDSNLQCSVCWEQFTLDEAVRKLPCD---HFYHTPCIEPWLQLHGT--------CPICRQ 141
++ L C VC + T+ + + C + YH C +P + C C +
Sbjct: 13 MEMGLACVVCRQM-TVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 25.8 bits (57), Expect = 7.5
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 54 EGLDAIVTQLLNQMDGSG 71
E I T+ L QM G G
Sbjct: 127 EAARRIKTEFLVQMQGVG 144
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta,
PHD, protein binding, peptide binding metal binding
protein; NMR {Homo sapiens}
Length = 61
Score = 24.3 bits (53), Expect = 8.0
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 117 CDHFYHTPCIEPWLQL--HGT--CPICRQ 141
C YH C++P ++ G CP C +
Sbjct: 29 CPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 24.4 bits (53), Expect = 8.1
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 15/35 (42%)
Query: 117 CDHFYHTPCIEP----------WLQLHGTCPICRQ 141
C+ YH C+ P W CP C+
Sbjct: 47 CNVAYHIYCLNPPLDKVPEEEYWY-----CPSCKT 76
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 25.7 bits (57), Expect = 8.6
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 2/32 (6%)
Query: 134 GTCPICRQTLHS--ESAESLGPAGAGGPGGLN 163
G C C++ + GA G +
Sbjct: 98 GRCRSCKEMHTGVCLTVNPARAGGAYGYVDMG 129
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator,
metal-binding, finger, signaling protein; NMR {Homo
sapiens}
Length = 71
Score = 24.5 bits (53), Expect = 8.6
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 14/65 (21%)
Query: 87 HITKAQIDSNLQCSVCWEQFTLDEAVRKL--PCDHFYHTPCIEP-------WLQLHGTCP 137
H ++ ID + CS+C + + + V C+ H C WL C
Sbjct: 7 HHMQSLIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWL-----CR 61
Query: 138 ICRQT 142
C Q+
Sbjct: 62 HCLQS 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.434
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,676,023
Number of extensions: 149242
Number of successful extensions: 549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 121
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)