RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5318
(176 letters)
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 72.6 bits (178), Expect = 2e-18
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 93 IDSNLQCSVCWEQFTLDEAVRKLP-CDHFYHTPCIEPWLQLHGTCPICRQTL 143
+D ++C+VC + E R LP C H +H C++ WL H TCP+CR T+
Sbjct: 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 65.0 bits (158), Expect = 3e-15
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHS 145
+C +C E + LPC H + CI W++ + TCP+C+ + S
Sbjct: 7 RCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 57.5 bits (138), Expect = 3e-12
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 15/58 (25%)
Query: 99 CSVCWEQFT---------------LDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQ 141
C++C + V C+H +H CI WL+ CP+ +
Sbjct: 24 CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR 81
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 57.3 bits (138), Expect = 3e-12
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 92 QIDSNLQ-CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHS 145
++ S Q C +C E + V+ PC H T C+ W + G CP CR +
Sbjct: 18 EMGSTFQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 70
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 53.5 bits (128), Expect = 2e-10
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 93 IDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG---TCPICRQTLHSES 147
+ L+C +C E E V CDH + C+ L CP+C+ + S
Sbjct: 18 MQKILECPICLELIK--EPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 51.6 bits (123), Expect = 2e-10
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 97 LQCSVCWEQFTLDEAVRK-LPCDHFYHTPCIEPWLQLHGT-CPICRQTLHSE 146
++C +C E +D+ C + C CP CR+ +
Sbjct: 1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 51.3 bits (122), Expect = 4e-10
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 96 NLQCSVCWEQFTLDEAVRKL--PCDHFYHTPCIEPWLQL-HGTCPICRQTLH 144
+ C C + +++ + C H C++ G CP C L
Sbjct: 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 49.1 bits (117), Expect = 2e-09
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTL 143
L+C C + + + LPC H + C+E CPIC+
Sbjct: 7 LRCQQCQAEA---KCPKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 46.0 bits (108), Expect = 3e-08
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 4/53 (7%)
Query: 94 DSNLQCSVCWEQFTLDE--AVRKLPCDHFYHTPCIEPWLQLHG--TCPICRQT 142
+ C +C E+ + A H C+ WL + C IC
Sbjct: 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 47.1 bits (111), Expect = 3e-08
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147
+++ L+CS C + C+H + + C+ + CP+C +
Sbjct: 18 RLEKLLRCSRCTNILREPVCL--GGCEHIFCSNCVSDC--IGTGCPVCYTPAWIQD 69
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 45.7 bits (108), Expect = 8e-08
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 91 AQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSESAE 149
A ++ C +C + C H + CI L++ G CP CR E
Sbjct: 18 AHFVKSISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74
Query: 150 S 150
S
Sbjct: 75 S 75
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 43.9 bits (102), Expect = 6e-07
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 20/85 (23%)
Query: 76 STDKIKQIPVAHITKAQIDSNLQCSVCWEQFTL---------------DEAVRKLPCDHF 120
S+ + +Q+ + + ++ C +C E+ + R C H
Sbjct: 5 SSGEPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA 64
Query: 121 YHTPCIEPWLQ-----LHGTCPICR 140
+H C+ CP C+
Sbjct: 65 FHLLCLLAMYCNGNKDGSLQCPSCK 89
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 42.4 bits (99), Expect = 2e-06
Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 98 QCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG--------TCPICRQTLHS 145
C +C ++ +++ C + T C++ +++L +CP
Sbjct: 7 GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 36.3 bits (83), Expect = 1e-04
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 97 LQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGTCPICRQTLHSES 147
+ C++ + V + +E +++ G PI + L E
Sbjct: 1 MLCAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 49
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 34.7 bits (79), Expect = 9e-04
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 92 QIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQTLHSES 147
+ +C + E + V + Y I+ WL TCP ++TL
Sbjct: 4 EFPEYFRCPISLELMK--DPV-IVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 32.9 bits (74), Expect = 0.004
Identities = 13/54 (24%), Positives = 16/54 (29%), Gaps = 4/54 (7%)
Query: 90 KAQIDSNLQCSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHG-TCPICRQT 142
K I L + +E P Y IE LQ G P+ R
Sbjct: 1 KRDIPDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSP 51
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 28.7 bits (63), Expect = 0.12
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 12/77 (15%)
Query: 93 IDSNLQCSVCWEQFTLDEAVRKLPCDH---FYHTPCIEPWLQLHGT--------CPICRQ 141
++ L C VC Q T+ + + C YH C +P + C C +
Sbjct: 13 MEMGLACVVC-RQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71
Query: 142 TLHSESAESLGPAGAGG 158
+ + ++ + G
Sbjct: 72 QMKRMAQKNQKSGPSSG 88
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 30.2 bits (67), Expect = 0.14
Identities = 22/109 (20%), Positives = 30/109 (27%), Gaps = 40/109 (36%)
Query: 75 LSTDKIKQIPVAHITKAQ---------------------IDSNLQCSVCWEQFTLDEAVR 113
S ++++ I VA I + ID NL+C C E
Sbjct: 21 FSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNLKCQTCQEGMNE----- 75
Query: 114 KLPCD-HFYH----TPCIEPWL------QLHGTCPICRQTLHSESAESL 151
C HF H P C C + L E E +
Sbjct: 76 ---CPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELM 121
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 24.5 bits (53), Expect = 1.6
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 99 CSVCWEQFTLDEAVRKLPCDHFYHTPCIEPWLQLHGT----CPICRQ 141
C VC ++ D+ + C+ +H C+ P L CP C+
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 551
Score = 26.5 bits (58), Expect = 2.0
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 18 TRRTLSASVGVSLANPEFAPLLPHFEGNPGDYAWGREGL 56
T R L + +P F ++PH R GL
Sbjct: 264 TMRCLPSI------HPVFKLIVPHLRYTLEINVRARNGL 296
>d2h3ka1 b.1.28.1 (A:1-144) Iron-regulated surface determinant
protein H, IsdH {Staphylococcus aureus [TaxId: 1280]}
Length = 144
Score = 25.8 bits (56), Expect = 2.1
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 89 TKAQIDSNLQCSVCWEQFTLDEAVRKLP 116
KA+++ ++ + W++F + E +KLP
Sbjct: 57 KKAEVELDINTASTWKKFEVYENNQKLP 84
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 25.6 bits (56), Expect = 3.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 52 GREGLDAIVTQLLNQMDG 69
G + + + Q+L +MDG
Sbjct: 127 GHDEREQTLNQMLVEMDG 144
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 24.2 bits (52), Expect = 3.2
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 13/63 (20%)
Query: 94 DSNLQCSVCWEQFTL---DEAVRKLPCDHFYHTPCIEPWLQLHGT----CPICRQTLHSE 146
DS C VC + L ++ C+ +H C P LQ C +C +
Sbjct: 5 DSATICRVCQKPGDLVMCNQ------CEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLK 58
Query: 147 SAE 149
+
Sbjct: 59 EED 61
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 25.5 bits (55), Expect = 3.7
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 57 DAIVTQLLNQMDGSGPPP-----LSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEA 111
D ++ Q+L +MDG +T++ I A + ++D + + E+ +
Sbjct: 128 DRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAIL 187
Query: 112 VRKLPCDHFYHTPCIE 127
L +E
Sbjct: 188 KANLRKSPVAKDVDLE 203
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 24.2 bits (52), Expect = 3.7
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 4/36 (11%)
Query: 117 CDHFYHTPCIEPWLQL----HGTCPICRQTLHSESA 148
C ++HT CI C C + S
Sbjct: 37 CGVWHHTRCIGINNADALPSKFLCFRCIELSGPSSG 72
>d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus
acidocaldarius [TaxId: 405212]}
Length = 308
Score = 25.6 bits (54), Expect = 3.9
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 56 LDAIVTQLLNQMDGSGPPPLSTDKIKQIPVAHITKAQIDSNLQCSVCWEQFTLDEAVRKL 115
LD ++ Q+L+Q++ P +Q + V +F +D R L
Sbjct: 1 LDPVIQQVLDQLNRMPAPDYKHLSAQQFRSQQSLFPPVKKEPVAEV--REFDMDLPGRTL 58
Query: 116 PCDHFYHTPCIEPW 129
+ P+
Sbjct: 59 KVRMYRPEGVEPPY 72
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 25.6 bits (56), Expect = 3.9
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 52 GREGLDAIVTQLLNQMDG 69
G + + + QLL +MDG
Sbjct: 124 GNDEREQTLNQLLVEMDG 141
>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida
albicans) [TaxId: 5476]}
Length = 440
Score = 25.2 bits (54), Expect = 5.0
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 48 DYAWGREGLDAIVTQLLNQMDGSGPPPLSTDKIKQIPVA 86
+Y WG+ G + V Q + + P ++ D+ K P A
Sbjct: 14 NYDWGKIGSSSAVAQFV----HNSDPSITIDETK--PYA 46
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 23.9 bits (51), Expect = 5.3
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 9/41 (21%)
Query: 117 CDHFYHTPCI---------EPWLQLHGTCPICRQTLHSESA 148
C + H C+ P L C ICR T S
Sbjct: 38 CHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPSSG 78
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 23.1 bits (49), Expect = 7.5
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 117 CDHFYHTPCIEPWLQL-----HGTCPICRQTLHSESA 148
C+ ++H C++ CP C S
Sbjct: 28 CEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGPSSG 64
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 23.5 bits (50), Expect = 8.0
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 5/47 (10%)
Query: 117 CDHFYHTPCIEPWLQL-----HGTCPICRQTLHSESAESLGPAGAGG 158
C ++H C+ + CP C ++ + G
Sbjct: 33 CQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGPSIMKNWHSGPSSG 79
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 22.6 bits (48), Expect = 9.8
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 117 CDHFYHTPCIEPWLQLHGT----CPICR 140
C YH C+ P L CP C
Sbjct: 27 CPSSYHIHCLNPPLPEIPNGEWLCPRCT 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.434
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 655,751
Number of extensions: 29414
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 35
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)