Query psy5322
Match_columns 476
No_of_seqs 151 out of 1056
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 23:40:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02258 9-cis-epoxycarotenoid 100.0 5E-102 1E-106 836.0 43.3 424 32-474 100-586 (590)
2 COG3670 Lignostilbene-alpha,be 100.0 2E-100 4E-105 777.2 29.1 401 46-472 25-489 (490)
3 PLN02491 carotenoid 9,10(9',10 100.0 1.7E-98 4E-103 806.4 39.6 412 37-474 42-539 (545)
4 PF03055 RPE65: Retinal pigmen 100.0 2.7E-98 6E-103 801.4 31.2 407 46-471 3-486 (486)
5 PLN02969 9-cis-epoxycarotenoid 100.0 4.3E-92 9.2E-97 766.4 39.1 410 42-471 59-610 (610)
6 KOG1285|consensus 100.0 3.1E-67 6.7E-72 558.7 27.1 414 49-473 25-577 (582)
7 KOG1285|consensus 99.9 6.4E-23 1.4E-27 219.6 10.5 248 32-291 93-359 (582)
8 COG3823 Glutamine cyclotransfe 79.3 1.4 3E-05 42.4 2.5 37 165-201 95-132 (262)
9 PF13570 PQQ_3: PQQ-like domai 64.1 8.3 0.00018 26.4 2.9 27 163-189 14-40 (40)
10 PF02239 Cytochrom_D1: Cytochr 48.6 85 0.0018 32.8 8.7 73 364-454 46-118 (369)
11 PRK13680 hypothetical protein; 43.5 23 0.0005 30.8 2.9 62 384-445 45-109 (117)
12 PF10282 Lactonase: Lactonase, 40.5 2.9E+02 0.0062 28.2 11.1 102 169-278 47-163 (345)
13 PF05096 Glu_cyclase_2: Glutam 32.2 57 0.0012 32.6 4.1 37 165-201 94-131 (264)
14 PRK11138 outer membrane biogen 31.5 1.7E+02 0.0037 30.3 7.8 114 94-220 263-380 (394)
15 TIGR02658 TTQ_MADH_Hv methylam 29.8 3.7E+02 0.0081 28.0 9.8 84 180-275 27-121 (352)
16 PF02239 Cytochrom_D1: Cytochr 26.5 91 0.002 32.6 4.6 86 353-457 272-360 (369)
17 TIGR03300 assembly_YfgL outer 22.9 3.4E+02 0.0074 27.7 8.1 52 165-221 315-366 (377)
18 KOG4105|consensus 22.8 24 0.00053 30.5 -0.4 42 182-223 24-69 (141)
19 PF14839 DOR: DOR family 21.7 54 0.0012 31.8 1.6 15 415-429 2-16 (216)
20 cd01262 PH_PDK1 3-Phosphoinosi 21.2 1.4E+02 0.003 24.9 3.8 31 170-200 16-46 (89)
21 TIGR02276 beta_rpt_yvtn 40-res 20.1 1.4E+02 0.003 19.8 3.2 29 170-198 3-32 (42)
No 1
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=5.3e-102 Score=836.05 Aligned_cols=424 Identities=22% Similarity=0.355 Sum_probs=353.6
Q ss_pred hcCCCCCCCcccccccccCCccccCC---ccceEEeeCCCCCceEEEeecCCCCCCCCcccccccCCCCceEEEEEecCc
Q psy5322 32 ENGDSIFDNVDAGVWFRDCHTEVDQP---VQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGL 108 (476)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~e~~~~---~~~~V~G~IP~~L~Gtl~RnGP~~~~~g~~~~~H~FDGdGmlh~~~f~~G~ 108 (476)
|++++|+++.||.++++++++++.+. ..++|+|+||+||+|||||||||+++. +..++||||||||||+|+|+||+
T Consensus 100 ~~~~~~~~~~~~~~~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f~-p~~~~H~FDGDGMvhav~f~dG~ 178 (590)
T PLN02258 100 ERQHPLPKTADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFE-PVAGHHLFDGDGMVHAVRIGNGS 178 (590)
T ss_pred cccCCCCCCCCcceeccCCCcCccccCCcccceEEeeCCCCCCeEEEEeCCCCCCC-CCCCCccccCCceEEEEEECCCe
Confidence 78899999999999999999998762 358999999999999999999998764 35678999999999999999999
Q ss_pred EEEEEEEecCHHHHHHHHcCCceeec-cCcccCCCC-cchH--HHH-HHhhcCC--CCCCceeeeeeeCCEEEEeecCCc
Q psy5322 109 VTYQCKFIKSESYIKNHAARRIVVTG-FGTRFVPDP-CASI--FQR-IATLFKP--GSDNTLVSVYPIQDQVYALGDSNY 181 (476)
Q Consensus 109 v~y~~RfV~T~~~~~e~~agr~l~~~-fg~~~~~~p-~~~~--~~r-~~~~~~~--~~~~aNt~v~~~gg~LlAl~E~~~ 181 (476)
|+|+||||||++|++|+++||++|++ +|+...... .+.. +.+ +.+.++. .+++|||||++|+||||||||+|.
T Consensus 179 a~y~~RfVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~ 258 (590)
T PLN02258 179 ASYACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDL 258 (590)
T ss_pred EEEEeeeecchhHHHHHhcCCcccccccccccccccccccchhhccccccccccccccCCCceeEEEECCEEEEEEcCCC
Confidence 99999999999999999999999986 887643221 1111 112 1222322 468999999999999999999999
Q ss_pred eeEEcCC---CCcccccccCCCccCCCCcCccceecC-CCCEEEEEeeeCCCCCeEEEEEE-CCCcccceEEEEeeeccC
Q psy5322 182 MHRIDPA---TLDTLEKMDLARDVTILHQTSHPLTTS-DGETFNLGVTLRPTGPRYCILQL-NDVADHRVKLVTSVPVRW 256 (476)
Q Consensus 182 p~~iDp~---TLeT~G~~d~~g~l~~~~~tAHPk~Dp-~Ge~~~~g~~~~~~~~~~~v~~~-~~g~~~~~~~v~~~~~~~ 256 (476)
||+||++ ||||+|++||+|+|. .+||||||+|| |||+++|+|++.. +|+++++.+ ++|. +...+++ .
T Consensus 259 Py~l~~d~~~TLeT~G~~df~g~l~-~~ftAHPKvDP~TGel~~f~y~~~~-~p~l~~~~~d~~G~-----~~~~~~i-~ 330 (590)
T PLN02258 259 PYQVRITGDGDLETVGRYDFDGQLD-SSMIAHPKVDPVTGELFALSYDVVK-KPYLKYFRFSPDGE-----KSPDVEI-P 330 (590)
T ss_pred ceEecCCCCCCcccCcccccCCccC-cccccCceEcCCCCeEEEEEEeccC-CCcEEEEEECCCCC-----EEeeEEe-e
Confidence 9999653 999999999999994 78999999999 9999999998764 488999999 6662 2222233 2
Q ss_pred CCCCceeeeeeecCCEEEEEecCceechhhhhcccC----------------CCCCCCcceEEeccC-------CCCCCC
Q psy5322 257 KFHPGYMHTFAMTPHYFIIVEQPLSISVPRLIKNSV----------------TNRPLATCLKFFEKQ-------SNIHST 313 (476)
Q Consensus 257 ~~~p~~iHDfaiTeny~V~~~~P~~~~~~~~~~g~~----------------~~~~~~~~~~W~~~~-------~n~~~~ 313 (476)
++.|+|||||||||||+||+++|+.+++.+|++|.. +.....+.++|++.+ .|+.++
T Consensus 331 lp~p~~~HDFaiTenY~Vf~d~Pl~~~~~~~~~g~~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee 410 (590)
T PLN02258 331 LDQPTMMHDFAITENFVVIPDQQVVFKLSEMIRGGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEE 410 (590)
T ss_pred CCCCccccceeccCceEEEEccCceEcHHHHhhCCCceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEeccccccc
Confidence 578999999999999999999999999999987742 111234578998877 455432
Q ss_pred --c--c-------------c---cccCCCcceEEEEeCCCCCCCCCCceeeeEecc---CCccCccccCCCCCCCCcEEE
Q psy5322 314 --P--R-------------Y---AQMFRARPLRFRLDLASPRTAPTGKVRPSVICD---VGCETPRMNGQHQGRPYTYFY 370 (476)
Q Consensus 314 --~--~-------------~---~~~~~~~l~R~~idl~tg~~~~~~~~~~~~l~~---~~~EfP~In~~~~Gr~yRy~Y 370 (476)
. . + ...++++|+||||||++| .++++.+.+ .++|||+||++|.||+|||+|
T Consensus 411 ~~~~~VVvd~~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg------~~~~~~l~~~~~~~~EFP~In~~~~Grk~Ry~Y 484 (590)
T PLN02258 411 PETDEVVVIGSCMTPPDSIFNESDESLRSVLSEIRLNLRTG------ESTRRPIISGEQVNLEAGMVNRNLLGRKTRYAY 484 (590)
T ss_pred CCCCeEEEEEecccChhhhcccccccccceEEEEEEECCCC------ceeeeEeecCCCcccccceECHHHCCCccceEE
Confidence 1 0 1 123467899999999998 245566654 799999999999999999999
Q ss_pred EeecCCCCCCCCeEEEEeccCCceEEEc-CCCCCCCccEEeeCCCCCC-CCCcEEEEEEEeCCCCCceEEEEEeCCCCCc
Q psy5322 371 AISADIDRDNPGTLIKVNVQNNTCKSWS-QKDVYPSEPVFVATPNAVK-EDEGVLLSVLLWSHHPTRVSLLVLNARTMQE 448 (476)
Q Consensus 371 ~~~~~~~~~~~~~l~K~Dl~tg~~~~w~-~~~~~~~EPvFVPrp~~~~-EDDG~ll~~v~d~~~~~~s~LlILDA~~l~~ 448 (476)
++..+++ ..+++|+|+|+++|+++.|. ++++|+|||+||||+++.+ |||||||++|+|+.+ ++|+|+||||++|++
T Consensus 485 ~~~~~~~-~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~~~~~EDDGylls~V~d~~~-~~SeL~IlDA~~l~~ 562 (590)
T PLN02258 485 LAIAEPW-PKVSGFAKVDLSTGEVKKYIYGEGRYGGEPFFVPRGSGSEAEDDGYILAFVHDEEK-GKSELQVVNAVNLEL 562 (590)
T ss_pred EeccCCC-CCCCeEEEEECCCCcEEEEECCCCccccCCEeccCCCCCcccCCcEEEEEEEECCC-CceEEEEEeCCCCcc
Confidence 9877654 45899999999999999875 9999999999999998874 999999999999984 789999999999999
Q ss_pred ceEEEEeCCCCCCCCCceeeecCCCC
Q psy5322 449 LGRVNFTTPTPVPKCLHGWYFPHERK 474 (476)
Q Consensus 449 vAr~~l~~P~~vP~gfHG~f~~~~~~ 474 (476)
||||+| |+|||+||||+|++.++.
T Consensus 563 VArv~L--P~rVP~GFHG~wv~~~~l 586 (590)
T PLN02258 563 EATVKL--PSRVPYGFHGTFISAEDL 586 (590)
T ss_pred cEEEEC--CCCCCCcccccccCHHHH
Confidence 999999 999999999999998654
No 2
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-100 Score=777.24 Aligned_cols=401 Identities=29% Similarity=0.441 Sum_probs=338.1
Q ss_pred ccccCCccccCCccce-EEeeCCCCCceEEEeecCCCCCCCCcccccccCCCCceEEEEEecC-cEEEEEEEecCHHHHH
Q psy5322 46 WFRDCHTEVDQPVQGT-VEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSG-LVTYQCKFIKSESYIK 123 (476)
Q Consensus 46 ~~~~~~~e~~~~~~~~-V~G~IP~~L~Gtl~RnGP~~~~~g~~~~~H~FDGdGmlh~~~f~~G-~v~y~~RfV~T~~~~~ 123 (476)
-|+++.+|++.. .|+ |+|+||.+|+|||||||||++++++...+||||||||||+|.|.|| +|+|+||||||.+|++
T Consensus 25 ~~a~~~~E~~~t-~L~~V~G~iPa~L~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~~gg~a~yrnrfVrT~g~~a 103 (490)
T COG3670 25 GFAPVRTEFDAT-DLTDVEGRIPADLDGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFRDGGRATYRNRFVRTQGYLA 103 (490)
T ss_pred cCCccceeeccc-ccceeeecCCcccCceEEccCCCccccCCccccCCccCCCeEEEEEecCCCceEEEEEEEeeceeeh
Confidence 367888887763 344 9999999999999999999999999999999999999999999995 9999999999999999
Q ss_pred HHHcCCceeeccCcccCCCC-cchHHHHHHhhcCCCCCCceeeeeeeCCEEEEeecCCceeEEcCCCCcccccccCCCcc
Q psy5322 124 NHAARRIVVTGFGTRFVPDP-CASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLEKMDLARDV 202 (476)
Q Consensus 124 e~~agr~l~~~fg~~~~~~p-~~~~~~r~~~~~~~~~~~aNt~v~~~gg~LlAl~E~~~p~~iDp~TLeT~G~~d~~g~l 202 (476)
|.+||+++|+++++..++.. ..++ -...+|.|||||+.|+++|+||||+|.||+|||.||+|+|..+|+|.-
T Consensus 104 e~~Ag~~l~~g~~~~~p~~~~~~~~-------~~~lkn~aNTsVi~~~~~LlalwEgG~pyrLdp~tL~TlG~~~~~g~~ 176 (490)
T COG3670 104 ENEAGKPLWGGLGETQPPGVRPHSR-------TGDLKNAANTSVIMHGDELLALWEGGSPYRLDPDTLETLGKEDFGGDP 176 (490)
T ss_pred hhhcCcceeccccccCCCCcCcCcc-------ccccccCCccceEeehhHHHHHHhcCCccccChhHhhhcChhhcCCCC
Confidence 99999999999887544331 1111 011688999999999999999999999999999999999999999953
Q ss_pred CCCCcCccceecC-CCCEEEEEeeeCCCCCeEEEEEE-CCCcccceEEEEeeeccCCCCCceeeeeeecCCEEEEEecCc
Q psy5322 203 TILHQTSHPLTTS-DGETFNLGVTLRPTGPRYCILQL-NDVADHRVKLVTSVPVRWKFHPGYMHTFAMTPHYFIIVEQPL 280 (476)
Q Consensus 203 ~~~~~tAHPk~Dp-~Ge~~~~g~~~~~~~~~~~v~~~-~~g~~~~~~~v~~~~~~~~~~p~~iHDfaiTeny~V~~~~P~ 280 (476)
.+.+||||||+|| +||++||||+... ++++++++ ++| +++....+ .++.+.|||||+||+||+||+++|+
T Consensus 177 ~g~~fsAHPkvDp~tgel~~fg~s~~~--~~l~~~~v~~~G-----~l~r~~~i-~lpg~~~~HDFa~T~~y~If~~~Pv 248 (490)
T COG3670 177 LGGPFSAHPKVDPDTGELFNFGYSFAL--PYLTYYVVDADG-----ELRRTVDI-PLPGPPMMHDFAITENYLIFFDLPV 248 (490)
T ss_pred CCCccccCccCCCCCceEEEEEeccCC--CeeEEEEECCCC-----cEEEeeee-ecCCCccceeeeecCceEEEEeCcc
Confidence 3688999999999 9999999998754 48999999 666 33333333 3688999999999999999999999
Q ss_pred eechhhhhcccC-------------------CCCCCCcceEEeccC-------CCCCCCc--------------------
Q psy5322 281 SISVPRLIKNSV-------------------TNRPLATCLKFFEKQ-------SNIHSTP-------------------- 314 (476)
Q Consensus 281 ~~~~~~~~~g~~-------------------~~~~~~~~~~W~~~~-------~n~~~~~-------------------- 314 (476)
.+|....+.++. .+.+. +.++|++.+ .|+.++.
T Consensus 249 ~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g~-~~irwfE~~p~fvfH~~NAye~~d~~v~~d~~~~~~~~~~~~~ 327 (490)
T COG3670 249 TFDPVPRLLGRPADGHAMRWRPELPTRILVLPREGD-SEIRWFEAEPGFVFHFLNAYEEGDEVVLVDFLRYDDFSQTLDT 327 (490)
T ss_pred cccchhHHhcCcccccceeecCCCCcEEEEEccCCC-CceeEEecCCeEEEEecceeecCCCcEEEEEEeeccccccccc
Confidence 999533332321 11111 467888876 2332211
Q ss_pred -------cccccCCCcceEEEEeCCCCCCCCCCceeeeEeccCCccCccccCCCCCCCCcEEEEeecCCCCCCCCe---E
Q psy5322 315 -------RYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRPYTYFYAISADIDRDNPGT---L 384 (476)
Q Consensus 315 -------~~~~~~~~~l~R~~idl~tg~~~~~~~~~~~~l~~~~~EfP~In~~~~Gr~yRy~Y~~~~~~~~~~~~~---l 384 (476)
.+....+++|+||+|||++| .+..+.+.++.||||+||+++.|++|||+|++.+.++...+++ |
T Consensus 328 ~~~~~~g~~~~~a~~~L~R~~lnl~tg------~v~~~~~~~r~~EFP~in~~~~G~p~RY~Y~~~~rp~~~l~~g~~~l 401 (490)
T COG3670 328 LGEGPGGDFRTLAPPRLHRWTLNLKTG------KVAEEQLDDRACEFPRINPRYVGQPYRYTYMSGARPGTFLFQGLQTL 401 (490)
T ss_pred ccccccccccccCCCcceEEEEccccc------hhHHHhhhhhhcccCccChhhcCCceEEEEEecccCCccchhhccee
Confidence 11223379999999999999 3667888899999999999999999999999988877666666 9
Q ss_pred EEEeccCCceEEEc-CCCCCCCccEEeeCCCCCCCCCcEEEEEEEeCCCCCceEEEEEeCCCCCc--ceEEEEeCCCCCC
Q psy5322 385 IKVNVQNNTCKSWS-QKDVYPSEPVFVATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQE--LGRVNFTTPTPVP 461 (476)
Q Consensus 385 ~K~Dl~tg~~~~w~-~~~~~~~EPvFVPrp~~~~EDDG~ll~~v~d~~~~~~s~LlILDA~~l~~--vAr~~l~~P~~vP 461 (476)
+|+|++||+.+.|+ ++++|++||+|||||++++|||||||++|+|.+. ++|+|+||||+++++ |||+.| |++||
T Consensus 402 ~k~D~~tg~~~~~~~g~~~y~~E~vfvPrpg~~~EdDGwLl~~vyd~~~-~~Sel~v~DA~~~~~epIa~l~L--p~~vP 478 (490)
T COG3670 402 AKHDLETGTSQVYSFGPRGYGSEPVFVPRPGSSAEDDGWLLTLVYDGDR-HASELLVFDAQRVTAEPIARLAL--PQRVP 478 (490)
T ss_pred EEEeccCCcEEEEecCCCCcccccccccCCCCCcCCCcEEEEEEEecCC-CcceEEEEecccCCCCcceEEec--ccccc
Confidence 99999999999997 8999999999999999999999999999999985 799999999999877 888888 99999
Q ss_pred CCCceeeecCC
Q psy5322 462 KCLHGWYFPHE 472 (476)
Q Consensus 462 ~gfHG~f~~~~ 472 (476)
+||||+|++.+
T Consensus 479 ~gfHG~w~~~~ 489 (490)
T COG3670 479 YGFHGNWVPTE 489 (490)
T ss_pred ccccccccccc
Confidence 99999999875
No 3
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=1.7e-98 Score=806.41 Aligned_cols=412 Identities=22% Similarity=0.356 Sum_probs=337.5
Q ss_pred CCCCcccccccccCCccc-cC-C--ccceEEeeCCCCCceEEEeecCCCCCCCCcccccccCCCCceEEEEEecCcEEEE
Q psy5322 37 IFDNVDAGVWFRDCHTEV-DQ-P--VQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQ 112 (476)
Q Consensus 37 ~~~~~~~~~~~~~~~~e~-~~-~--~~~~V~G~IP~~L~Gtl~RnGP~~~~~g~~~~~H~FDGdGmlh~~~f~~G~v~y~ 112 (476)
|+++.||.++++++++++ .| + ..++|+|+||+||+|||||||||+++. +..++||||||||||+|+|++|+|+|+
T Consensus 42 ~~~~~~~~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~Gt~~RNGPnp~~~-~~~~~H~FDGDGMlha~~f~~G~a~y~ 120 (545)
T PLN02491 42 MHDASQPLHYLSGNFAPVRDETPPVKDLPVRGHLPECLNGEFVRVGPNPKFS-PVAGYHWFDGDGMIHGMRIKDGKATYV 120 (545)
T ss_pred ccCCCCCcccccCCCcCccccCCcccCcEEEeeCCCcCCeEEEEeCCCCCCC-CCCCCccccCCccEEEEEEcCCcEEEE
Confidence 788999999999999988 34 2 247899999999999999999999864 467789999999999999999999999
Q ss_pred EEEecCHHHHHHHHcCCceeeccCcccCCCCcchHHHH-------HHhh---cCC--CCCCceeeeeeeCCEEEEeecCC
Q psy5322 113 CKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQR-------IATL---FKP--GSDNTLVSVYPIQDQVYALGDSN 180 (476)
Q Consensus 113 ~RfV~T~~~~~e~~agr~l~~~fg~~~~~~p~~~~~~r-------~~~~---~~~--~~~~aNt~v~~~gg~LlAl~E~~ 180 (476)
||||||++|++|+++|+.+|+.+|.. +++|+. +... ... .+++|||||++|+|+||||||++
T Consensus 121 ~RfVrT~~~~~E~~ag~~~~~~~~~~------~g~~g~~~~~~~~~r~~~~~~~~~~~~~~ANT~vi~~~grLlAl~E~g 194 (545)
T PLN02491 121 SRYVKTSRLKQEEFFGGAKFMKIGDL------KGLFGLLMVNMQQLRAKLKVLDFSYGNGTGNTALIYHHGKLLALSEAD 194 (545)
T ss_pred eeeecccchhhhhhcCcccccccccc------cccchhhhhhhhhhhccccccccccCCCCCceeEEEECCEEEEEEcCC
Confidence 99999999999999999999865532 222221 0111 111 35899999999999999999999
Q ss_pred ceeEE---cCCCCcccccccCCCccCCCCcCccceecC-CCCEEEEEeeeCCCCCeEEEEEE-CCCcccceEEEEeeecc
Q psy5322 181 YMHRI---DPATLDTLEKMDLARDVTILHQTSHPLTTS-DGETFNLGVTLRPTGPRYCILQL-NDVADHRVKLVTSVPVR 255 (476)
Q Consensus 181 ~p~~i---Dp~TLeT~G~~d~~g~l~~~~~tAHPk~Dp-~Ge~~~~g~~~~~~~~~~~v~~~-~~g~~~~~~~v~~~~~~ 255 (476)
.||+| ||.||||+|++||+|+|. .+||||||+|| |||+|+|||+.. ++++.++.+ ++|... ..+++
T Consensus 195 ~Py~l~~~Dp~tLeT~G~~df~g~l~-~~~TAHPk~DP~TGel~~fgy~~~--~p~~~y~~~~~~G~~~-----~~v~i- 265 (545)
T PLN02491 195 KPYVVKVLEDGDLQTLGLLDYDKRLK-HSFTAHPKVDPFTGEMFTFGYSHE--PPYITYRVISKDGAMH-----DPVPI- 265 (545)
T ss_pred CCeEecCCCCCCcceeeecccCCccC-cccccCccCcCCCCCEEEEEecCC--CCcEEEEEECCCCcCc-----ceeEe-
Confidence 99996 779999999999999996 78999999999 999999999873 467777777 556322 22222
Q ss_pred CCCCCceeeeeeecCCEEEEEecCceechhhhhcccC----------------CCC-CCCcceEEeccC-------CCCC
Q psy5322 256 WKFHPGYMHTFAMTPHYFIIVEQPLSISVPRLIKNSV----------------TNR-PLATCLKFFEKQ-------SNIH 311 (476)
Q Consensus 256 ~~~~p~~iHDfaiTeny~V~~~~P~~~~~~~~~~g~~----------------~~~-~~~~~~~W~~~~-------~n~~ 311 (476)
.++.|+|||||||||||+||+++|+.+++.+|+++.. .+. ...+.++|++.+ .|+.
T Consensus 266 ~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~irw~e~~~~f~fH~~NA~ 345 (545)
T PLN02491 266 TISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELMIRWFELPNCFIFHNANAW 345 (545)
T ss_pred ecCCCceeeeeEecCCEEEEEECCcccCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCceEEEEcCCceEeecCCcc
Confidence 2467999999999999999999999999999987631 111 223578998877 3443
Q ss_pred CCc-------------c-------c---cccCCCcceEEEEeCCCCCCCCCCceeeeEeccCCccCccccCCCCCCCCcE
Q psy5322 312 STP-------------R-------Y---AQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPRMNGQHQGRPYTY 368 (476)
Q Consensus 312 ~~~-------------~-------~---~~~~~~~l~R~~idl~tg~~~~~~~~~~~~l~~~~~EfP~In~~~~Gr~yRy 368 (476)
++. . + ...+.++|+||||||+++ .++++.|++.+||||+||++|+||+|||
T Consensus 346 Ee~~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ridl~tg------~~~~~~l~~~~~EfP~In~~~~Grk~ry 419 (545)
T PLN02491 346 EEEDEVVLITCRLENPDLDMVNGKVKEKLENFGNELYEMRFNMKTG------AASQKKLSASAVDFPRVNESYTGRKQRY 419 (545)
T ss_pred ccCCeEEEEEeccCCCccccccccccccccccCceEEEEEEECCCC------ceeeeccCCcccccCccCHHHCCCcccE
Confidence 221 0 0 012347899999999998 3677888889999999999999999999
Q ss_pred EEEeecCCCCCCCCeEEEEeccC----CceE---------EE-cCCCCCCCccEEeeCCCC--CCCCCcEEEEEEEeCCC
Q psy5322 369 FYAISADIDRDNPGTLIKVNVQN----NTCK---------SW-SQKDVYPSEPVFVATPNA--VKEDEGVLLSVLLWSHH 432 (476)
Q Consensus 369 ~Y~~~~~~~~~~~~~l~K~Dl~t----g~~~---------~w-~~~~~~~~EPvFVPrp~~--~~EDDG~ll~~v~d~~~ 432 (476)
+|++..++.. .+++|+|+|+++ |+.+ .| +++++|+|||+||||+++ .+|||||||++|+|..+
T Consensus 420 ~Y~~~~~~~~-~~~gl~K~D~~t~~~~g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~~~~~~EDDG~ll~~V~d~~~ 498 (545)
T PLN02491 420 VYGTILDSIA-KVTGIIKFDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREPGTTSEEDDGYLIFFVHDENT 498 (545)
T ss_pred EEEeccCCcc-CcCeEEEEEecccccCCccccccccceeEEEEcCCCccccCCEEecCCCCCCcccCCcEEEEEEEcCCC
Confidence 9998776543 479999999996 4432 45 699999999999999753 58999999999999984
Q ss_pred CCceEEEEEeCCCCCc--ceEEEEeCCCCCCCCCceeeecCCCC
Q psy5322 433 PTRVSLLVLNARTMQE--LGRVNFTTPTPVPKCLHGWYFPHERK 474 (476)
Q Consensus 433 ~~~s~LlILDA~~l~~--vAr~~l~~P~~vP~gfHG~f~~~~~~ 474 (476)
++|+|+||||++|+. ||||+| |+|||+||||+|++.++.
T Consensus 499 -~~S~l~VlDAk~~~~~pVA~v~L--P~rVP~GfHG~fv~~~~l 539 (545)
T PLN02491 499 -GKSSVNVIDAKTMSADPVAVVEL--PHRVPYGFHAFFVTEEQL 539 (545)
T ss_pred -CcceEEEEeCCCCCCCeeEEEEC--CCCCCCCccccCcCHHHH
Confidence 789999999999994 999999 999999999999998653
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=2.7e-98 Score=801.36 Aligned_cols=407 Identities=35% Similarity=0.648 Sum_probs=303.1
Q ss_pred ccccCCccccCCccceEEeeCCCCCceEEEeecCCCCC-CCCcccccccCCCCceEEEEEecCcEEEEEEEecCHHHHHH
Q psy5322 46 WFRDCHTEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWN-VGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKN 124 (476)
Q Consensus 46 ~~~~~~~e~~~~~~~~V~G~IP~~L~Gtl~RnGP~~~~-~g~~~~~H~FDGdGmlh~~~f~~G~v~y~~RfV~T~~~~~e 124 (476)
.|+++.+|...+..++|+|+||+||+|||||||||+++ .++.+++||||||||||+|+|++|+|+|+||||+|+.|++|
T Consensus 3 ~f~~~~~E~~~~~~~~v~G~iP~~L~G~~~RnGP~~~~~~~~~~~~H~FDGdGmv~~~~f~~g~v~y~~R~v~T~~~~~e 82 (486)
T PF03055_consen 3 GFAPVTEEVPDPEDLEVEGEIPSWLDGTLYRNGPGPFEVIGGRRYNHWFDGDGMVHAFRFDDGRVTYRNRFVRTEGYKAE 82 (486)
T ss_dssp CGS---SEE-EEEC-EEEE---TT-EEEEEEEEBEESE-ETTEE-SCGGGSEBEEEEEEEETTEEEEEEEE---HHHHHH
T ss_pred CCCCCccccCCccccEEeeeCCCcCCCeeEEEcCcccccCCCcccccccCCCCEEEEEEECCCCceeEEEEeCcHHHHHH
Confidence 47889999855556899999999999999999999999 88899999999999999999999999999999999999999
Q ss_pred HHcCCceeec-cCcccCCCCcchHHHHHHhh-cC-CCCCCceeeeeeeCCEEEEeecCCceeEEcCCCCcccccccCCCc
Q psy5322 125 HAARRIVVTG-FGTRFVPDPCASIFQRIATL-FK-PGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLEKMDLARD 201 (476)
Q Consensus 125 ~~agr~l~~~-fg~~~~~~p~~~~~~r~~~~-~~-~~~~~aNt~v~~~gg~LlAl~E~~~p~~iDp~TLeT~G~~d~~g~ 201 (476)
+++||.+|++ ||+...++||+++| .+... +. ..+|+|||||++|+|+||||||+|.||+|||+||||+|.++|++.
T Consensus 83 ~~~g~~~~~g~~gt~~~~~~~~~~~-~~~~~~~~~~~~~~aNt~v~~~~g~llAl~E~g~p~~lDp~TLeT~g~~~~~~~ 161 (486)
T PF03055_consen 83 REAGRRLYRGEFGTVPLPDPCRNIF-RFPMPFFRGKPKNNANTNVIPHGGRLLALWEGGPPYELDPDTLETLGPFDFDGK 161 (486)
T ss_dssp HHHTSS-SC-TTTCTTCSTHHHHTC-HHTTS--GGGB-----SEEEEETTEEEEE-TTSEEEEEETTTCEEEEEEEGGGT
T ss_pred HhcCCceecccccccccCchhhhhh-hhccccccccCCCCceeeeEEECCEEEEEEcCCCCEEechhHhhhcCccccccc
Confidence 9999999976 89887778887753 11100 11 178999999999999999999999999999999999999999999
Q ss_pred cCCCCcCccceecC-CCCEEEEEeeeCCC-CCeEEEEEE-CCCcccceEEEEeeeccCCCCCceeeeeeecCCEEEEEec
Q psy5322 202 VTILHQTSHPLTTS-DGETFNLGVTLRPT-GPRYCILQL-NDVADHRVKLVTSVPVRWKFHPGYMHTFAMTPHYFIIVEQ 278 (476)
Q Consensus 202 l~~~~~tAHPk~Dp-~Ge~~~~g~~~~~~-~~~~~v~~~-~~g~~~~~~~v~~~~~~~~~~p~~iHDfaiTeny~V~~~~ 278 (476)
|++..||||||+|| +|++|+|++++++. .+.+.+|++ ++| +++.+++...++.++|||||+|||||+||+++
T Consensus 162 l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~iHdf~vT~~Y~V~~~~ 236 (486)
T PF03055_consen 162 LPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEIDPDG-----KKIHRVPSFPLPRPSYIHDFAVTENYVVFPDN 236 (486)
T ss_dssp SSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE-TTS-----EEEEEEEESCCCS-B-----EE-SSEEEEEE-
T ss_pred ccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEEcCcc-----ceeEEeeeccCCCCcccccccccCceEEEEEC
Confidence 98899999999999 99999999998764 379999999 444 45666666667889999999999999999999
Q ss_pred CceechhhhhcccCCCCCCCcceEEeccC-----------------------------CCCCC--C---c----------
Q psy5322 279 PLSISVPRLIKNSVTNRPLATCLKFFEKQ-----------------------------SNIHS--T---P---------- 314 (476)
Q Consensus 279 P~~~~~~~~~~g~~~~~~~~~~~~W~~~~-----------------------------~n~~~--~---~---------- 314 (476)
|+.+++.++++|... .++++|+++. .|+.+ + .
T Consensus 237 P~~~~~~~~~~g~~~----~~~~~~~p~~~t~~~VipR~~~~~~v~~~~~~~~~~~H~~NAyE~~dg~~~iv~d~~~~~~ 312 (486)
T PF03055_consen 237 PLRFDPERLLLGGSP----IDCLKWDPERPTRFHVIPRDGGKSPVRWFEAPPFFVFHFVNAYEDDDGGGEIVLDACRYDD 312 (486)
T ss_dssp SEEE-HHHHHTTCCT----GGCEEE-TTS-EEEEEEETTTSCCCEEEEEETTCEEEEEEEEEEETTT-TEEEEEEEEECS
T ss_pred CeEECHHHHhhCCcc----cceEEECCCCCeEEEEEECcCCCceeEEEecCChhhccccceeecCCCceEEEEEEeecCC
Confidence 999999999976421 3455555544 12211 1 0
Q ss_pred -c----------------ccccCCCcceEEEEeCC--CCCCCCCCceeeeEeccC-CccCccccCCCCCCCCcEEEEeec
Q psy5322 315 -R----------------YAQMFRARPLRFRLDLA--SPRTAPTGKVRPSVICDV-GCETPRMNGQHQGRPYTYFYAISA 374 (476)
Q Consensus 315 -~----------------~~~~~~~~l~R~~idl~--tg~~~~~~~~~~~~l~~~-~~EfP~In~~~~Gr~yRy~Y~~~~ 374 (476)
. ......++|+||+||+. ++ .++++.|++. +||||+||+++.||+|||+|+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~------~~~~~~l~~~~~~EfP~in~~~~g~~~ry~Y~~~~ 386 (486)
T PF03055_consen 313 PEFLDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTG------RVSEEPLDDGNPCEFPRINPRYSGRPYRYVYAVGM 386 (486)
T ss_dssp SS-CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TC------EEEEEEEETTEEEEEEEE-GGGTTS--SEEEEEEE
T ss_pred cccccccchhcccccccccccCCCceEEEEEEccccccc------eeEHhHhccCCCcccceeCcccCCCcccEEEEEee
Confidence 0 01234689999999999 54 3788889887 699999999999999999998765
Q ss_pred CCCC---CCCCeEEEEeccCCceEEEc-CCCCCCCccEEeeCCCCCCCCCcEEEEEEEeCCCCCceEEEEEeCCCCCc--
Q psy5322 375 DIDR---DNPGTLIKVNVQNNTCKSWS-QKDVYPSEPVFVATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQE-- 448 (476)
Q Consensus 375 ~~~~---~~~~~l~K~Dl~tg~~~~w~-~~~~~~~EPvFVPrp~~~~EDDG~ll~~v~d~~~~~~s~LlILDA~~l~~-- 448 (476)
.... ..+++|+|+|++||+.+.|+ +++++++||+|||||++.+|||||||++|++.++ ++|+|+||||++|++
T Consensus 387 ~~~~~~~~~~~~l~k~D~~tg~~~~~~~~~~~~~~EpvFVPr~~~~~EdDG~Ll~~v~~~~~-~~s~l~VlDA~~l~~GP 465 (486)
T PF03055_consen 387 DPERSPGFPFNGLVKVDLETGEVQRWSFGPGCFPGEPVFVPRPGGAEEDDGYLLSVVYDSDT-NRSELLVLDAKDLEEGP 465 (486)
T ss_dssp CSCTS---EEEEEEEEETTTTEEEEEE-TTTEEE--EEEEE-TTS-STT-EEEEEEEEETTT-TCEEEEEEETTTTCE--
T ss_pred cccCCcCcCCCEEEEEecccccceEEECCCCceecceEeccCCCCCCCCceEEEEEEEECCC-CccEEEEEeCCCCCcCc
Confidence 5433 46899999999999999997 6799999999999999999999999999999984 799999999999999
Q ss_pred ceEEEEeCCCCCCCCCceeeecC
Q psy5322 449 LGRVNFTTPTPVPKCLHGWYFPH 471 (476)
Q Consensus 449 vAr~~l~~P~~vP~gfHG~f~~~ 471 (476)
|||++| |++||+||||+|+++
T Consensus 466 vAr~~l--P~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 466 VARVEL--PHRVPYGFHGSWVPE 486 (486)
T ss_dssp EEEEEE--SS---S-SEEEEEE-
T ss_pred eEEEEC--CCCCCCCccccccCC
Confidence 999999 999999999999974
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=4.3e-92 Score=766.41 Aligned_cols=410 Identities=21% Similarity=0.325 Sum_probs=323.2
Q ss_pred ccccccccCCccccCCccc-eEEeeCCCCC-ceEEEeecCCCCCCCCcccccccCCCCceEEEEEecC--cEEEEEEEec
Q psy5322 42 DAGVWFRDCHTEVDQPVQG-TVEGVIPSWI-DGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSG--LVTYQCKFIK 117 (476)
Q Consensus 42 ~~~~~~~~~~~e~~~~~~~-~V~G~IP~~L-~Gtl~RnGP~~~~~g~~~~~H~FDGdGmlh~~~f~~G--~v~y~~RfV~ 117 (476)
|-+..|+++.+|..+++++ .|+|+||+|| +|||||||||+++.++.+++||||||||||+|+|++| +|+|+|||||
T Consensus 59 ~~~~~f~~~~~E~~~~~~l~~V~G~IP~~L~~GtlyRnGPg~~~~~~~~~~HwFDGdGmlh~f~f~~G~~~v~y~nRfVr 138 (610)
T PLN02969 59 DYQFLFVSQRSETKDPVRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRAFHIDGGDRPVQYSARYVK 138 (610)
T ss_pred HhhhhhcCChhhcCCccccceEEecCCchhcCCEEEEecCCcccCCCCCccccCCCCceEEEEEEcCCCeEEEEEeeeec
Confidence 3445588999998455566 5899999999 9999999999999876678999999999999999998 5999999999
Q ss_pred CHHHHHHHHcCCceee----c-cCcccCCCCcchHHHHHHhhcCCCCCCceeeeeeeCCEEEEeecCCceeEEcCCCCcc
Q psy5322 118 SESYIKNHAARRIVVT----G-FGTRFVPDPCASIFQRIATLFKPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDT 192 (476)
Q Consensus 118 T~~~~~e~~agr~l~~----~-fg~~~~~~p~~~~~~r~~~~~~~~~~~aNt~v~~~gg~LlAl~E~~~p~~iDp~TLeT 192 (476)
|++|++|+++|+.++. + |++... .+. +.+ ....+|+|||||++|+|+||||||+|.||+|||+||||
T Consensus 139 T~~~~~E~~ag~~~~~~~~~~pfs~~~~-~~~------~~~-~~~~kn~ANT~V~~~gg~LlAl~E~g~P~~lDP~TLeT 210 (610)
T PLN02969 139 TEAKKEEHDPETRTWRFTYRGPFSVLKG-GKR------VGN-VKVMKNVANTSVLKWGGRLLCLWEGGEPYEIDSGTLET 210 (610)
T ss_pred cHHHHHHHHhCCcceeeeeccchhcccC-CCC------ccc-ccccccCCCcceeeeCCEEEEecCCCCCeEcCcCccce
Confidence 9999999999988763 2 222111 110 000 11157999999999999999999999999999999999
Q ss_pred cccccC-----------------------------CCccC--CCCcCccceecC-CCCEEEEEeeeC---CCCCeEEEEE
Q psy5322 193 LEKMDL-----------------------------ARDVT--ILHQTSHPLTTS-DGETFNLGVTLR---PTGPRYCILQ 237 (476)
Q Consensus 193 ~G~~d~-----------------------------~g~l~--~~~~tAHPk~Dp-~Ge~~~~g~~~~---~~~~~~~v~~ 237 (476)
+|++|| .|.+. ...||||||+|| ||++++|+|+.. ..++.+.+|+
T Consensus 211 ~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP~tg~lv~f~~~~~~~~~~~~~~~~y~ 290 (610)
T PLN02969 211 IGRFDLAPDDDSSKDDRLQGSDAWDLAARLLKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDMLLPRSNFTFYE 290 (610)
T ss_pred eecccccccccccccccccccccccccccccccccccccccCCccccccCCcCCCCCCEEEEEeccccccCCCceeEEEE
Confidence 999999 34443 457999999999 999999999863 2347899999
Q ss_pred E-CCCcccceEEEEeeeccCCCCCceeeeeeecCCEEEEEecCceechhhhhcccCCCCCCC------------------
Q psy5322 238 L-NDVADHRVKLVTSVPVRWKFHPGYMHTFAMTPHYFIIVEQPLSISVPRLIKNSVTNRPLA------------------ 298 (476)
Q Consensus 238 ~-~~g~~~~~~~v~~~~~~~~~~p~~iHDfaiTeny~V~~~~P~~~~~~~~~~g~~~~~~~~------------------ 298 (476)
+ ++|+ ++.+..+ .++.++|||||+|||||+||+++|+++|+.+++.+..+..++.
T Consensus 291 ~d~~G~-----~~~~~~~-~~p~~~~iHDfaiTeny~Vf~~~P~~~d~~~~l~~~~G~~~~~~~l~wdp~~~t~~~~Vip 364 (610)
T PLN02969 291 FDADFK-----LVQRKEF-KLDDHLMIHDWAFTDTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSSPVYLLP 364 (610)
T ss_pred ECCCCC-----Eecceee-cCCCcceeeeeeccCCEEEEEECceecCHHHHHHHhhcCCCchheeEECCCCCccEEEEEE
Confidence 9 5552 2222233 3567999999999999999999999999986553211112222
Q ss_pred -------cceEE---eccC--------CCCCCC----c---c--------ccc---------------------------
Q psy5322 299 -------TCLKF---FEKQ--------SNIHST----P---R--------YAQ--------------------------- 318 (476)
Q Consensus 299 -------~~~~W---~~~~--------~n~~~~----~---~--------~~~--------------------------- 318 (476)
..++| ++.+ .|+.++ . . |+.
T Consensus 365 R~~~~~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (610)
T PLN02969 365 RFPEKEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGNLRIQLHASACSYQWFSFHRMFGYDWQNKKLDPSVMNNAKGK 444 (610)
T ss_pred CcCCCcccceeeeeEEeeCCCeEEEeccceeecCCCCCceEEEEEEeccccccccccccccccccccccCcchhcccCcc
Confidence 34555 4432 233221 0 0 100
Q ss_pred cCCCcceEEEEeCC-CCCCCCCCceeeeEec---cCCccCccccCCCCCCCCcEEEEeecCCC-----CCCCCeEEEEec
Q psy5322 319 MFRARPLRFRLDLA-SPRTAPTGKVRPSVIC---DVGCETPRMNGQHQGRPYTYFYAISADID-----RDNPGTLIKVNV 389 (476)
Q Consensus 319 ~~~~~l~R~~idl~-tg~~~~~~~~~~~~l~---~~~~EfP~In~~~~Gr~yRy~Y~~~~~~~-----~~~~~~l~K~Dl 389 (476)
...++|+||+||+. ++ .+. .++.+.|+ +.++|||+||++|.||+|||+|++..+.. ...+++|+|+|+
T Consensus 445 ~~~~~l~r~~idl~~~g-~~~--~~~~~~l~~~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~~~~~~~~~~~~l~K~D~ 521 (610)
T PLN02969 445 ELLPHLVQVSIDLDRTG-DCR--SCDVEPLSNQWEKPADFPVINPSFSGQKNEYTYAAAASGSRKTLPHFPFDSVVKLDV 521 (610)
T ss_pred cccceEEEEEEeCCcCC-ccc--cccceeeccccccccccCccChhHCCCcceEEEEeeecCCCcccccCCcCeEEEEEC
Confidence 01358999999997 45 221 24567775 77999999999999999999999876532 235799999999
Q ss_pred cCCceEEEc-CCCCCCCccEEeeC---CCCCCCCCcEEEEEEEeCCCCCceEEEEEeCCCCCc----ceEEEEeCCCCC-
Q psy5322 390 QNNTCKSWS-QKDVYPSEPVFVAT---PNAVKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQE----LGRVNFTTPTPV- 460 (476)
Q Consensus 390 ~tg~~~~w~-~~~~~~~EPvFVPr---p~~~~EDDG~ll~~v~d~~~~~~s~LlILDA~~l~~----vAr~~l~~P~~v- 460 (476)
++|+.+.|+ ++++|+|||||||| |++.+|||||||++|++... ++|+|+||||++|++ |||++| |++|
T Consensus 522 ~tg~~~~w~~g~~~~~~EPvFVPr~~~p~~~~EDDG~Ll~~v~d~~~-~~S~LvILDAk~~~eg~~PVAri~L--P~~v~ 598 (610)
T PLN02969 522 PDGSARSWSTGARRFVGEPVFVPRKSSQGGGEEDDGYVLVVEYAVSD-ERCYLVILDAKRIGERDAVVAKLEV--PKHLT 598 (610)
T ss_pred CCCCEEEEEeCCCCcccCCEEecCCCCCCCCccCCcEEEEEEEECCC-CceEEEEEeCCCCcccCceeEEEEC--CcccC
Confidence 999999997 79999999999999 46889999999999999984 799999999999997 999999 9998
Q ss_pred -CCCCceeeecC
Q psy5322 461 -PKCLHGWYFPH 471 (476)
Q Consensus 461 -P~gfHG~f~~~ 471 (476)
|+||||+|++.
T Consensus 599 ~P~GfHG~w~~~ 610 (610)
T PLN02969 599 FPMGFHGFWADE 610 (610)
T ss_pred CCccccccccCC
Confidence 99999999863
No 6
>KOG1285|consensus
Probab=100.00 E-value=3.1e-67 Score=558.73 Aligned_cols=414 Identities=28% Similarity=0.491 Sum_probs=343.2
Q ss_pred cCCccccCCc-cceEEeeCCCCCceEEEeecCCCCCCCCcccccccCCCCceEEEEEecCcEEEEEEEecCHHHHHHHHc
Q psy5322 49 DCHTEVDQPV-QGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAA 127 (476)
Q Consensus 49 ~~~~e~~~~~-~~~V~G~IP~~L~Gtl~RnGP~~~~~g~~~~~H~FDGdGmlh~~~f~~G~v~y~~RfV~T~~~~~e~~a 127 (476)
+..+++..+. ++.+.|.||+||+|+++|||||++..|...++|||||.+++|+++|.||++.|++||++|+.|++....
T Consensus 25 ~~~~~~~~~~~~~~~~g~ip~wL~g~~lrn~pg~~~~g~~~~~h~fd~~~~~~~~~~~dg~~~~~~~~~~s~~y~~~~~p 104 (582)
T KOG1285|consen 25 PPFENVSIPRRECTVKGSIPKWLDGTLLRNGPGLFTVGEEKYNHLFDGPALLHAFHFLDGRVYYSSRYLESDPYKKTVDP 104 (582)
T ss_pred CChhhccCCccccccccccCccccccccCCCCcccccCcccccccccchhhhhheeecCCeEEEEeeecccCCccccccc
Confidence 4444444433 478899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeccCccc-CCCCcchHHHHHHhhcCC---CCCCceeeeeee-CCEEEEeecCCceeEEcCCCCcccccccCCC-c
Q psy5322 128 RRIVVTGFGTRF-VPDPCASIFQRIATLFKP---GSDNTLVSVYPI-QDQVYALGDSNYMHRIDPATLDTLEKMDLAR-D 201 (476)
Q Consensus 128 gr~l~~~fg~~~-~~~p~~~~~~r~~~~~~~---~~~~aNt~v~~~-gg~LlAl~E~~~p~~iDp~TLeT~G~~d~~g-~ 201 (476)
.|.+.++|++.+ .|+||.++|.++...+.. .++|||+++.+. |++|||.+|....++||++||+|+..++|.+ .
T Consensus 105 ~r~v~~~f~~~~~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~pv~g~~~~~gtet~~~~ki~~~tl~t~~~~~~~k~~ 184 (582)
T KOG1285|consen 105 NRIVSGEFAPVAEFPDPCKNIFSGFFPEFRNGESIRDNANPNFTPVGGHHLYAGTETPHAVKIDPGTLETTYKVRFTKTL 184 (582)
T ss_pred ceeeeccccccCCCCCccCcceeeeeeecccccccccCCCcceeecCCCeeEecCCCceeEEecCcccceeEeeccccce
Confidence 999999999988 889999999997666653 789999999999 8999999999999999999999999999999 7
Q ss_pred cCCCCcCccceecCCCCEEE-EEee-eCCC-CCeEEEEEECCC--c-------ccceEEEEeeeccCCCCCceeeeeeec
Q psy5322 202 VTILHQTSHPLTTSDGETFN-LGVT-LRPT-GPRYCILQLNDV--A-------DHRVKLVTSVPVRWKFHPGYMHTFAMT 269 (476)
Q Consensus 202 l~~~~~tAHPk~Dp~Ge~~~-~g~~-~~~~-~~~~~v~~~~~g--~-------~~~~~~v~~~~~~~~~~p~~iHDfaiT 269 (476)
+....++|||++|++|++++ +|.. +... +..+.+...+.+ . ......++ ++++++++|.|||+||+|
T Consensus 185 v~~~~~gah~~~d~~G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a-~~~dd~~~p~yvhs~G~t 263 (582)
T KOG1285|consen 185 VQEHTAGAHPHPDEIGTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLA-YSEDDLPYPGYVHSFGDT 263 (582)
T ss_pred eeeeecccCCcccCcccEEeeechhhccccccceeEEEecCCCccccccccceEeecceee-eccCCCccceEEeecCCc
Confidence 77788999999999999999 6655 4333 345677777443 1 11222223 558899999999999999
Q ss_pred CCEEEEEecCceechhhhhcccCC---CCCCCcceEEeccC----------------------------CCCC-CC----
Q psy5322 270 PHYFIIVEQPLSISVPRLIKNSVT---NRPLATCLKFFEKQ----------------------------SNIH-ST---- 313 (476)
Q Consensus 270 eny~V~~~~P~~~~~~~~~~g~~~---~~~~~~~~~W~~~~----------------------------~n~~-~~---- 313 (476)
|||+|++++|+++++.+++..++. +..++.++.|.+.+ .|+. +|
T Consensus 264 enyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~~~~~~t~hh~na~eedg~vi 343 (582)
T KOG1285|consen 264 ENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVEIFPSFPTFHHDNAFEEDGCVV 343 (582)
T ss_pred cceEeEecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCcceeccCcceEEEeeeecccCceE
Confidence 999999999999999999877653 45567777888755 0000 00
Q ss_pred -------------------------------------------------------------ccc----------------
Q psy5322 314 -------------------------------------------------------------PRY---------------- 316 (476)
Q Consensus 314 -------------------------------------------------------------~~~---------------- 316 (476)
..+
T Consensus 344 ~D~~~~~~~~~~~~~~~p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~~~~~~e~~~~~~~~~v~~~~~s~~~~ 423 (582)
T KOG1285|consen 344 PDLCVYFDLSEMIRDTSPLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFHLWNNWEKKPYDWEVVVIGSCMSSTST 423 (582)
T ss_pred EEEEEEechhhhhcccceeecccccccccccccccCCcccceEEEeccccccccchhhhcccCCCceEEeecccCCccch
Confidence 000
Q ss_pred -----cccCCCcceEEEEeCCCCCCCCCCceeeeEe-ccCCccCccccCCCCCCCCcEEEEeecCCCCCCCCeEEEEecc
Q psy5322 317 -----AQMFRARPLRFRLDLASPRTAPTGKVRPSVI-CDVGCETPRMNGQHQGRPYTYFYAISADIDRDNPGTLIKVNVQ 390 (476)
Q Consensus 317 -----~~~~~~~l~R~~idl~tg~~~~~~~~~~~~l-~~~~~EfP~In~~~~Gr~yRy~Y~~~~~~~~~~~~~l~K~Dl~ 390 (476)
++....+|...++++.++.+ .+..+ ...++|+++||+.|.||+|||+|++..++ ...+++|+|+|+.
T Consensus 424 i~~~~de~~~~~l~e~r~~~~tg~~------~~~~~~~~~nl~~~~in~~~~Gkk~ryvY~ai~~~-~p~~~g~vKvDl~ 496 (582)
T KOG1285|consen 424 IFRESDELLGNRLEEIRLNLKTGLE------FPRPVIPKINLDFGMINRSYLGKKYRYVYGAILDP-WPKVSGIVKVDLV 496 (582)
T ss_pred hhcccccchhceeeeeeeccccccc------ccceeecccccccccccceeecccceEEEEEecCC-ccCCCeEEEEEec
Confidence 01223567777777777622 22222 23599999999999999999999998886 4558999999999
Q ss_pred CCceEEEc-CCCCCCCccEEeeCCCCCCCCCcEEEEEEEeCCCCCceEEEEEeCCCCCcceEEEEeCCCCCCCCCceeee
Q psy5322 391 NNTCKSWS-QKDVYPSEPVFVATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYF 469 (476)
Q Consensus 391 tg~~~~w~-~~~~~~~EPvFVPrp~~~~EDDG~ll~~v~d~~~~~~s~LlILDA~~l~~vAr~~l~~P~~vP~gfHG~f~ 469 (476)
+|+.++|. +.+++.|||+|||+|++.+||||||+++|+++.+ .+|+|+||||++|+++||+++ |.+||+||||+|+
T Consensus 497 ~g~~~~w~~~~~~~~GEP~FVP~p~~~eEDdG~Iv~~v~~~~~-~~s~l~ildAK~l~~~ar~~v--p~rvP~gfHG~f~ 573 (582)
T KOG1285|consen 497 TGEVKKWREGGGRPGGEPIFVPRPGTLEEDDGYIVSVVHDESK-EKSFLLILDAKTLEEVARVEV--PTRVPYGFHGTFV 573 (582)
T ss_pred CCceeeEecCCCccCCCceEecCCCCcccCCcEEEEEEEcCCC-CcccEEEEeccccceeeEEec--CCCCCCccceeEe
Confidence 99999997 5667777999999999999999999999999996 789999999999999999999 9999999999999
Q ss_pred cCCC
Q psy5322 470 PHER 473 (476)
Q Consensus 470 ~~~~ 473 (476)
+..+
T Consensus 574 ~~~~ 577 (582)
T KOG1285|consen 574 STTD 577 (582)
T ss_pred cccc
Confidence 8765
No 7
>KOG1285|consensus
Probab=99.88 E-value=6.4e-23 Score=219.62 Aligned_cols=248 Identities=18% Similarity=0.279 Sum_probs=195.9
Q ss_pred hcCCCCCCCcccccccccCCccccC-Cc--cceEEeeCCCCCceEEEeecCCCCCCCCcccccccCCCCceEEEEEecC-
Q psy5322 32 ENGDSIFDNVDAGVWFRDCHTEVDQ-PV--QGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSG- 107 (476)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~e~~~-~~--~~~V~G~IP~~L~Gtl~RnGP~~~~~g~~~~~H~FDGdGmlh~~~f~~G- 107 (476)
.+-++|.++.+++.++.+++.++.+ |. .+.++|.+|..++|.++|||||+.+.. ...+|+|||+||+|+++|+.|
T Consensus 93 ~~s~~y~~~~~p~r~v~~~f~~~~~~pd~~~~~~s~~~~~~~~g~~~rd~aN~~f~p-v~g~~~~~gtet~~~~ki~~~t 171 (582)
T KOG1285|consen 93 LESDPYKKTVDPNRIVSGEFAPVAEFPDPCKNIFSGFFPEFRNGESIRDNANPNFTP-VGGHHLYAGTETPHAVKIDPGT 171 (582)
T ss_pred cccCCcccccccceeeeccccccCCCCCccCcceeeeeeecccccccccCCCcceee-cCCCeeEecCCCceeEEecCcc
Confidence 4457788999999999999999985 43 367899999999999999999998742 445799999999999999999
Q ss_pred -cEEEEEEEecCHHHHHHHHcCCcee-eccCcccCCCCcc---hHHHHHHhhcC-C--CCCCceeeeeeeCCEEEEeecC
Q psy5322 108 -LVTYQCKFIKSESYIKNHAARRIVV-TGFGTRFVPDPCA---SIFQRIATLFK-P--GSDNTLVSVYPIQDQVYALGDS 179 (476)
Q Consensus 108 -~v~y~~RfV~T~~~~~e~~agr~l~-~~fg~~~~~~p~~---~~~~r~~~~~~-~--~~~~aNt~v~~~gg~LlAl~E~ 179 (476)
+++|++||.+| |.+|+.+|+..+ ...|+......+. ..++|....+. + ..+.+|+..+++-++++|+.|+
T Consensus 172 l~t~~~~~~~k~--~v~~~~~gah~~~d~~G~~~g~~g~~~~~~~~~r~~~~~~~p~~~~~~~~~~~v~~~~~~~a~~~d 249 (582)
T KOG1285|consen 172 LETTYKVRFTKT--LVQEHTAGAHPHPDEIGTVYGHFGIARFGLFFARALTVLKNPANGVGLANAGLVWFHNRLLAYSED 249 (582)
T ss_pred cceeEeeccccc--eeeeeecccCCcccCcccEEeeechhhccccccceeEEEecCCCccccccccceEeecceeeeccC
Confidence 88999999999 999999997554 4577765432221 11233222221 2 4556899989999999999998
Q ss_pred Ccee--EEcC-CCCcc-cccccCCCccCCCCcCccceecC-CCCEEEEEeeeCCCCCeEEEEEE-CCC-cccceEEEEee
Q psy5322 180 NYMH--RIDP-ATLDT-LEKMDLARDVTILHQTSHPLTTS-DGETFNLGVTLRPTGPRYCILQL-NDV-ADHRVKLVTSV 252 (476)
Q Consensus 180 ~~p~--~iDp-~TLeT-~G~~d~~g~l~~~~~tAHPk~Dp-~Ge~~~~g~~~~~~~~~~~v~~~-~~g-~~~~~~~v~~~ 252 (476)
+.|| .+.- ..+|| +|+++|.+++. ..+.||||+|| +|+++..+|+..++ +++.++++ ..+ ++...++.
T Consensus 250 d~~~p~yvhs~G~tenyi~~~e~~~~l~-~~~~a~pk~~~~~g~~~~~~yd~~~~-~~l~~~~~~~~~~k~~~~~~~--- 324 (582)
T KOG1285|consen 250 DLPYPGYVHSFGDTENYIGRFEFPLRLN-LSKFAHPKLDPVTGEWFADFYDWVPK-PYLIYHKFSKEGGKSVPVEIF--- 324 (582)
T ss_pred CCccceEEeecCCccceEeEecCCcccc-hhhhccCcccccccchhhhhhcccCC-CcEEEEEeccccCccCcceec---
Confidence 8776 3433 67999 99999999997 67999999999 99999999998764 77888887 333 33333332
Q ss_pred eccCCCCCceeeeeeecCCEEEEEecCceechhhhhccc
Q psy5322 253 PVRWKFHPGYMHTFAMTPHYFIIVEQPLSISVPRLIKNS 291 (476)
Q Consensus 253 ~~~~~~~p~~iHDfaiTeny~V~~~~P~~~~~~~~~~g~ 291 (476)
...|+|+||||+|||+.|++++++..++..|..+.
T Consensus 325 ----~~~~t~hh~na~eedg~vi~D~~~~~~~~~~~~~~ 359 (582)
T KOG1285|consen 325 ----PSFPTFHHDNAFEEDGCVVPDLCVYFDLSEMIRDT 359 (582)
T ss_pred ----cCcceEEEeeeecccCceEEEEEEEechhhhhccc
Confidence 12689999999999999999999999999777654
No 8
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.34 E-value=1.4 Score=42.44 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=33.1
Q ss_pred eeeeeCCEEEEe-ecCCceeEEcCCCCcccccccCCCc
Q psy5322 165 SVYPIQDQVYAL-GDSNYMHRIDPATLDTLEKMDLARD 201 (476)
Q Consensus 165 ~v~~~gg~LlAl-~E~~~p~~iDp~TLeT~G~~d~~g~ 201 (476)
.+..+++.+|+| |-.+..+.+|++||+++|++.|.|.
T Consensus 95 Git~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge 132 (262)
T COG3823 95 GITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE 132 (262)
T ss_pred ceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc
Confidence 567899999998 6678999999999999999999886
No 9
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=64.13 E-value=8.3 Score=26.43 Aligned_cols=27 Identities=22% Similarity=0.158 Sum_probs=20.0
Q ss_pred eeeeeeeCCEEEEeecCCceeEEcCCC
Q psy5322 163 LVSVYPIQDQVYALGDSNYMHRIDPAT 189 (476)
Q Consensus 163 Nt~v~~~gg~LlAl~E~~~p~~iDp~T 189 (476)
+.++...+|++|+.++.|.-|.||++|
T Consensus 14 ~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 14 WSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred CcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 346677899999999999999999975
No 10
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=48.56 E-value=85 Score=32.80 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=43.0
Q ss_pred CCCcEEEEeecCCCCCCCCeEEEEeccCCceEEEcCCCCCCCccEEeeCCCCCCCCCcEEEEEEEeCCCCCceEEEEEeC
Q psy5322 364 RPYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNA 443 (476)
Q Consensus 364 r~yRy~Y~~~~~~~~~~~~~l~K~Dl~tg~~~~w~~~~~~~~EPvFVPrp~~~~EDDG~ll~~v~d~~~~~~s~LlILDA 443 (476)
..-||+|.++.+ +.|.++|+.+++...-.. .+.+|.=|.- ..|.-||++.-+.. ..+.|+|+
T Consensus 46 ~Dgr~~yv~~rd------g~vsviD~~~~~~v~~i~---~G~~~~~i~~----s~DG~~~~v~n~~~-----~~v~v~D~ 107 (369)
T PF02239_consen 46 PDGRYLYVANRD------GTVSVIDLATGKVVATIK---VGGNPRGIAV----SPDGKYVYVANYEP-----GTVSVIDA 107 (369)
T ss_dssp T-SSEEEEEETT------SEEEEEETTSSSEEEEEE----SSEEEEEEE------TTTEEEEEEEET-----TEEEEEET
T ss_pred CCCCEEEEEcCC------CeEEEEECCcccEEEEEe---cCCCcceEEE----cCCCCEEEEEecCC-----CceeEecc
Confidence 446899987532 479999999998643321 1223333321 23445777644332 48999999
Q ss_pred CCCCcceEEEE
Q psy5322 444 RTMQELGRVNF 454 (476)
Q Consensus 444 ~~l~~vAr~~l 454 (476)
++|+.+.++..
T Consensus 108 ~tle~v~~I~~ 118 (369)
T PF02239_consen 108 ETLEPVKTIPT 118 (369)
T ss_dssp TT--EEEEEE-
T ss_pred ccccceeeccc
Confidence 99998777665
No 11
>PRK13680 hypothetical protein; Provisional
Probab=43.47 E-value=23 Score=30.81 Aligned_cols=62 Identities=13% Similarity=0.268 Sum_probs=44.4
Q ss_pred EEEEeccCCceEEEcCCCCCCC--ccE-EeeCCCCCCCCCcEEEEEEEeCCCCCceEEEEEeCCC
Q psy5322 384 LIKVNVQNNTCKSWSQKDVYPS--EPV-FVATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNART 445 (476)
Q Consensus 384 l~K~Dl~tg~~~~w~~~~~~~~--EPv-FVPrp~~~~EDDG~ll~~v~d~~~~~~s~LlILDA~~ 445 (476)
-+|=|+......+|..+....| -|| .|-..+-..+||+|++-+.+.+.+....+-+++|.++
T Consensus 45 qVK~DflqNRI~RW~~Dkk~LGt~~PVaWin~~~itg~~~~~~VPltVRG~k~d~~Y~V~vdC~~ 109 (117)
T PRK13680 45 SVKRDYLQNRIARWADDQKQLGQADPVAWVNVQDITGKDDKWQVPLTVRGKSADIHYQVVVDCKA 109 (117)
T ss_pred HHHHHHhhccccchhhhHhhcCCCCCeEEEcccccccccceEEEEEEEecccCceEEEEEEEccC
Confidence 3667777777778864434333 565 3333344678999999999998877889999999864
No 12
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=40.46 E-value=2.9e+02 Score=28.19 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=60.1
Q ss_pred eCCEEEEeecCC----c--eeEEcCC--CCcccccccCCCccCCCCcCccceecCCCCEEEEEeeeCCCCCeEEEEEE-C
Q psy5322 169 IQDQVYALGDSN----Y--MHRIDPA--TLDTLEKMDLARDVTILHQTSHPLTTSDGETFNLGVTLRPTGPRYCILQL-N 239 (476)
Q Consensus 169 ~gg~LlAl~E~~----~--p~~iDp~--TLeT~G~~d~~g~l~~~~~tAHPk~Dp~Ge~~~~g~~~~~~~~~~~v~~~-~ 239 (476)
-+..|||..|.+ . -|+|+++ +|+-+++..-.|. ...|-.+||+|+.... .++. +..+.+|.+ +
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~-----~p~~i~~~~~g~~l~v-any~--~g~v~v~~l~~ 118 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS-----SPCHIAVDPDGRFLYV-ANYG--GGSVSVFPLDD 118 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS-----CEEEEEECTTSSEEEE-EETT--TTEEEEEEECT
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC-----CcEEEEEecCCCEEEE-EEcc--CCeEEEEEccC
Confidence 457799998853 2 4688885 6777776543332 3468889998885433 3444 356899999 5
Q ss_pred CCcccceE-EE---EeeeccCCCCCceeeeeeecC--CEEEEEec
Q psy5322 240 DVADHRVK-LV---TSVPVRWKFHPGYMHTFAMTP--HYFIIVEQ 278 (476)
Q Consensus 240 ~g~~~~~~-~v---~~~~~~~~~~p~~iHDfaiTe--ny~V~~~~ 278 (476)
+|.+.... ++ ..-|...-...+-.|...++. +|+++++.
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl 163 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL 163 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec
Confidence 56432221 11 011111112357789999995 58877764
No 13
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=32.23 E-value=57 Score=32.63 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=31.3
Q ss_pred eeeeeCCEEEEe-ecCCceeEEcCCCCcccccccCCCc
Q psy5322 165 SVYPIQDQVYAL-GDSNYMHRIDPATLDTLEKMDLARD 201 (476)
Q Consensus 165 ~v~~~gg~LlAl-~E~~~p~~iDp~TLeT~G~~d~~g~ 201 (476)
++..++++||-| |-.+.-+..|+.||+.++.+.|.+.
T Consensus 94 Git~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E 131 (264)
T PF05096_consen 94 GITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE 131 (264)
T ss_dssp EEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS
T ss_pred eEEEECCEEEEEEecCCeEEEEccccceEEEEEecCCc
Confidence 567789999988 7788999999999999999888764
No 14
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=31.49 E-value=1.7e+02 Score=30.35 Aligned_cols=114 Identities=11% Similarity=0.157 Sum_probs=63.7
Q ss_pred CCCCceEEEEEecCcEEEEEEEecCHHHHHHHHcCCceee-c-cCcccCCCCc--chHHHHHHhhcCCCCCCceeeeeee
Q psy5322 94 DCSGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVT-G-FGTRFVPDPC--ASIFQRIATLFKPGSDNTLVSVYPI 169 (476)
Q Consensus 94 DGdGmlh~~~f~~G~v~y~~RfV~T~~~~~e~~agr~l~~-~-fg~~~~~~p~--~~~~~r~~~~~~~~~~~aNt~v~~~ 169 (476)
+.+|.++++..++|++.++..+-..... -..+..+|- . =|....-++. ..+|.. ....+....+.+..
T Consensus 263 ~~~g~l~ald~~tG~~~W~~~~~~~~~~---~~~~~~vy~~~~~g~l~ald~~tG~~~W~~-----~~~~~~~~~sp~v~ 334 (394)
T PRK11138 263 AYNGNLVALDLRSGQIVWKREYGSVNDF---AVDGGRIYLVDQNDRVYALDTRGGVELWSQ-----SDLLHRLLTAPVLY 334 (394)
T ss_pred EcCCeEEEEECCCCCEEEeecCCCccCc---EEECCEEEEEcCCCeEEEEECCCCcEEEcc-----cccCCCcccCCEEE
Confidence 6679999999999998887764211100 012222331 1 1111000100 001110 00111223355667
Q ss_pred CCEEEEeecCCceeEEcCCCCcccccccCCCccCCCCcCccceecCCCCEE
Q psy5322 170 QDQVYALGDSNYMHRIDPATLDTLEKMDLARDVTILHQTSHPLTTSDGETF 220 (476)
Q Consensus 170 gg~LlAl~E~~~p~~iDp~TLeT~G~~d~~g~l~~~~~tAHPk~Dp~Ge~~ 220 (476)
+|+||...+.|..+.||+.|=+.+.+.+..+ ..+.+.|.+. +|.+|
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~----~~~~s~P~~~-~~~l~ 380 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRFVAQQKVDS----SGFLSEPVVA-DDKLL 380 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEcCC----CcceeCCEEE-CCEEE
Confidence 9999999999999999999888887776642 2356778765 45554
No 15
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=29.81 E-value=3.7e+02 Score=28.03 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=52.9
Q ss_pred CceeEEcCCCCcccccccCCCccCCCCcCccceecCCCCEEEEEeeeCC------CCCeEEEEEECCCcccceEEEEeee
Q psy5322 180 NYMHRIDPATLDTLEKMDLARDVTILHQTSHPLTTSDGETFNLGVTLRP------TGPRYCILQLNDVADHRVKLVTSVP 253 (476)
Q Consensus 180 ~~p~~iDp~TLeT~G~~d~~g~l~~~~~tAHPk~Dp~Ge~~~~g~~~~~------~~~~~~v~~~~~g~~~~~~~v~~~~ 253 (476)
+.-+-||..|++.+|...-+ ...|..+-|+|....+...+-+ ..-.+.++.... .+++++++
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G-------~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-----~~~~~~i~ 94 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG-------FLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-----HLPIADIE 94 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc-------CCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECcc-----CcEEeEEc
Confidence 67899999999999987633 2344557777765544443211 223567777543 35677777
Q ss_pred ccCCCC---CceeeeeeecCC--EEEE
Q psy5322 254 VRWKFH---PGYMHTFAMTPH--YFII 275 (476)
Q Consensus 254 ~~~~~~---p~~iHDfaiTen--y~V~ 275 (476)
+..-+. ..+-+.|+++.+ ++.+
T Consensus 95 ~p~~p~~~~~~~~~~~~ls~dgk~l~V 121 (352)
T TIGR02658 95 LPEGPRFLVGTYPWMTSLTPDNKTLLF 121 (352)
T ss_pred cCCCchhhccCccceEEECCCCCEEEE
Confidence 643223 567889999966 4443
No 16
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=26.50 E-value=91 Score=32.57 Aligned_cols=86 Identities=15% Similarity=0.184 Sum_probs=45.3
Q ss_pred cCccccCCCCCCCCcEEEEeec-CCCCCCCCeEEEEeccCCceEE-Ec-CCCCCCCccEEeeCCCCCCCCCcEEEEEEEe
Q psy5322 353 ETPRMNGQHQGRPYTYFYAISA-DIDRDNPGTLIKVNVQNNTCKS-WS-QKDVYPSEPVFVATPNAVKEDEGVLLSVLLW 429 (476)
Q Consensus 353 EfP~In~~~~Gr~yRy~Y~~~~-~~~~~~~~~l~K~Dl~tg~~~~-w~-~~~~~~~EPvFVPrp~~~~EDDG~ll~~v~d 429 (476)
-|-+.+|+ -||+|.... .+. .+.|.-+|.++.+... .. .++.- ++.+ +-...++=+.+| +.+
T Consensus 272 lFi~thP~-----s~~vwvd~~~~~~---~~~v~viD~~tl~~~~~i~~~~~~~---~~h~---ef~~dG~~v~vS-~~~ 336 (369)
T PF02239_consen 272 LFIKTHPD-----SRYVWVDTFLNPD---ADTVQVIDKKTLKVVKTITPGPGKR---VVHM---EFNPDGKEVWVS-VWD 336 (369)
T ss_dssp --EE--TT------SEEEEE-TT-SS---HT-EEEEECCGTEEEE-HHHHHT-----EEEE---EE-TTSSEEEEE-EE-
T ss_pred ceeecCCC-----CccEEeeccCCCC---CceEEEEECcCcceeEEEeccCCCc---Eecc---EECCCCCEEEEE-Eec
Confidence 67777774 579997521 222 5789999999986533 22 22211 2222 112233444445 544
Q ss_pred CCCCCceEEEEEeCCCCCcceEEEEeCC
Q psy5322 430 SHHPTRVSLLVLNARTMQELGRVNFTTP 457 (476)
Q Consensus 430 ~~~~~~s~LlILDA~~l~~vAr~~l~~P 457 (476)
.+ + .|+|+|++++++++|+.+..|
T Consensus 337 ~~-~---~i~v~D~~Tl~~~~~i~~~tP 360 (369)
T PF02239_consen 337 GN-G---AIVVYDAKTLKEKKRIPVPTP 360 (369)
T ss_dssp -T-T---EEEEEETTTTEEEEEEE--SE
T ss_pred CC-C---EEEEEECCCcEEEEEEEeeCC
Confidence 43 2 999999999999999998444
No 17
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=22.89 E-value=3.4e+02 Score=27.67 Aligned_cols=52 Identities=8% Similarity=0.057 Sum_probs=38.3
Q ss_pred eeeeeCCEEEEeecCCceeEEcCCCCcccccccCCCccCCCCcCccceecCCCCEEE
Q psy5322 165 SVYPIQDQVYALGDSNYMHRIDPATLDTLEKMDLARDVTILHQTSHPLTTSDGETFN 221 (476)
Q Consensus 165 ~v~~~gg~LlAl~E~~~p~~iDp~TLeT~G~~d~~g~l~~~~~tAHPk~Dp~Ge~~~ 221 (476)
+.+..+++||+..+.|.-|.+|+.|-+.+.+....+ ..+.++|.+- ++.+|.
T Consensus 315 sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~----~~~~~sp~~~-~~~l~v 366 (377)
T TIGR03300 315 APAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDG----SGIASPPVVV-GDGLLV 366 (377)
T ss_pred cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC----CccccCCEEE-CCEEEE
Confidence 444578999999999999999999888887766543 2467888765 345653
No 18
>KOG4105|consensus
Probab=22.81 E-value=24 Score=30.50 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=29.7
Q ss_pred eeEEcCCCCcccccc-cCCCccC--CCCcCccceecC-CCCEEEEE
Q psy5322 182 MHRIDPATLDTLEKM-DLARDVT--ILHQTSHPLTTS-DGETFNLG 223 (476)
Q Consensus 182 p~~iDp~TLeT~G~~-d~~g~l~--~~~~tAHPk~Dp-~Ge~~~~g 223 (476)
+..-|.+.||+.|++ +++|.-. ..-.|-|.-+|| +|-.+++.
T Consensus 24 ~~LSDaENle~FGKCNN~nGHGHNY~v~vtvrGeiDp~tGMV~nla 69 (141)
T KOG4105|consen 24 EKLSDAENLETFGKCNNSNGHGHNYVVKVTVRGEIDPTTGMVYNLA 69 (141)
T ss_pred cccCchhhhHHhhccCCCCCCCcceEEEEEEecccCCccceeEEHH
Confidence 444578899999998 5666311 133578899999 89887753
No 19
>PF14839 DOR: DOR family
Probab=21.66 E-value=54 Score=31.83 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=12.8
Q ss_pred CCCCCCcEEEEEEEe
Q psy5322 415 AVKEDEGVLLSVLLW 429 (476)
Q Consensus 415 ~~~EDDG~ll~~v~d 429 (476)
.++|||||||+=+.+
T Consensus 2 ~e~edD~WilVD~~~ 16 (216)
T PF14839_consen 2 SEEEDDEWILVDFID 16 (216)
T ss_pred CccccCCeEEEEecC
Confidence 467999999998877
No 20
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.25 E-value=1.4e+02 Score=24.90 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=27.4
Q ss_pred CCEEEEeecCCceeEEcCCCCcccccccCCC
Q psy5322 170 QDQVYALGDSNYMHRIDPATLDTLEKMDLAR 200 (476)
Q Consensus 170 gg~LlAl~E~~~p~~iDp~TLeT~G~~d~~g 200 (476)
..|.|-|||.+.-+-+||.+..-.|+..|..
T Consensus 16 kkR~LiLTd~PrL~yvdp~~~~~KgeIp~s~ 46 (89)
T cd01262 16 KKRQLILTNGPRLIYVDPVKKVVKGEIPWSD 46 (89)
T ss_pred ceeeEEEecCceEEEEcCCcCeEEeEecccc
Confidence 6789999999999999999988889888776
No 21
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=20.11 E-value=1.4e+02 Score=19.79 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=22.2
Q ss_pred CCEEEEee-cCCceeEEcCCCCcccccccC
Q psy5322 170 QDQVYALG-DSNYMHRIDPATLDTLEKMDL 198 (476)
Q Consensus 170 gg~LlAl~-E~~~p~~iDp~TLeT~G~~d~ 198 (476)
+++||+.. .++....||+.|++.+++...
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 56688764 467788899999988888765
Done!