Query psy5322
Match_columns 476
No_of_seqs 151 out of 1056
Neff 6.9
Searched_HMMs 13730
Date Fri Aug 16 23:41:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5322.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5322hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m7ja2 b.92.1.6 (A:420-480) N 28.8 6.5 0.00047 27.2 0.4 37 434-472 6-42 (61)
2 d1qksa2 b.70.2.1 (A:136-567) C 21.9 33 0.0024 31.9 4.3 34 420-454 378-412 (432)
3 d1pbyb_ b.69.2.2 (B:) Quinohem 20.4 1.7E+02 0.013 23.9 8.7 94 173-277 4-100 (337)
4 d1l0qa2 b.69.2.3 (A:1-301) Sur 16.9 2.3E+02 0.017 22.6 8.7 74 381-470 223-296 (301)
5 d1zaka2 g.41.2.1 (A:128-158) M 16.2 30 0.0022 20.6 1.5 14 212-225 3-17 (31)
6 d1hzua2 b.70.2.1 (A:118-543) C 15.2 50 0.0036 30.0 3.7 32 422-454 375-406 (426)
7 d1k91a_ b.104.1.1 (A:) Calreti 15.1 35 0.0025 21.1 1.6 12 405-416 1-12 (37)
8 d1pbyb_ b.69.2.2 (B:) Quinohem 14.6 1.6E+02 0.012 24.0 7.0 62 382-458 260-321 (337)
9 d1l0qa2 b.69.2.3 (A:1-301) Sur 13.9 1.9E+02 0.013 23.3 7.1 71 367-454 2-72 (301)
10 d1jmxb_ b.69.2.2 (B:) Quinohem 11.7 1.9E+02 0.014 23.7 6.5 61 382-457 272-332 (346)
No 1
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=28.83 E-value=6.5 Score=27.22 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=29.9
Q ss_pred CceEEEEEeCCCCCcceEEEEeCCCCCCCCCceeeecCC
Q psy5322 434 TRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGWYFPHE 472 (476)
Q Consensus 434 ~~s~LlILDA~~l~~vAr~~l~~P~~vP~gfHG~f~~~~ 472 (476)
...+|+|||..++.+-|.-.- |...+.|++..|+...
T Consensus 6 ~~ADlvvfDp~~i~d~~~~~~--~~~~~~Gi~~v~VnG~ 42 (61)
T d1m7ja2 6 YYADLVVFDPATVADSATFEH--PTERAAGIHSVYVNGA 42 (61)
T ss_dssp SBCCEEEECTTTCBCCCCSSS--TTCCCBSEEEEEETTE
T ss_pred cCCCEEEECHHHccCcccccc--cccccceeEEEEECCE
Confidence 357899999999887665555 8999999999998764
No 2
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=21.91 E-value=33 Score=31.87 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=24.6
Q ss_pred Cc-EEEEEEEeCCCCCceEEEEEeCCCCCcceEEEE
Q psy5322 420 EG-VLLSVLLWSHHPTRVSLLVLNARTMQELGRVNF 454 (476)
Q Consensus 420 DG-~ll~~v~d~~~~~~s~LlILDA~~l~~vAr~~l 454 (476)
|| +|+..+.... +..+.++|+|++++++.++++-
T Consensus 378 DG~~v~~S~~~~~-~~~g~i~i~D~~T~k~~~~i~~ 412 (432)
T d1qksa2 378 DGTEVWFSVWNGK-DQESALVVVDDKTLELKHVIKD 412 (432)
T ss_dssp TSSEEEEEEECCT-TSCCEEEEEETTTTEEEEEECC
T ss_pred CCCEEEEEEecCC-CCCCcEEEEECCCceEEeEecC
Confidence 45 5544454443 3468999999999999888876
No 3
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=20.43 E-value=1.7e+02 Score=23.88 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=54.7
Q ss_pred EEEeecCCceeEEcCCCCcccccccCCCccCCCCcCccceecCCCCEEEEEeeeCCCCCeEEEEEECCCcccceEEEEee
Q psy5322 173 VYALGDSNYMHRIDPATLDTLEKMDLARDVTILHQTSHPLTTSDGETFNLGVTLRPTGPRYCILQLNDVADHRVKLVTSV 252 (476)
Q Consensus 173 LlAl~E~~~p~~iDp~TLeT~G~~d~~g~l~~~~~tAHPk~Dp~Ge~~~~g~~~~~~~~~~~v~~~~~g~~~~~~~v~~~ 252 (476)
+++-++++.-+-+|..|.+.+......+.- ....|..+.|+|+.+.+.-. ..-.+.+|++..| +++.++
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~---~~~~~i~~spDg~~l~v~~~---~~~~v~v~D~~t~-----~~~~~~ 72 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAVDKVITIADAG---PTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTG-----ETLGRI 72 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCT---TCCCCEEECTTSSEEEEEET---TTTEEEEEETTTC-----CEEEEE
T ss_pred EEEEcCCCEEEEEECCCCeEEEEEECCCCC---CCccEEEECCCCCEEEEEEC---CCCeEEEEECCCC-----cEEEEE
Confidence 556678888999999999988877654331 12367789999986443311 1245778876554 344444
Q ss_pred eccCCCC-CceeeeeeecC--CEEEEEe
Q psy5322 253 PVRWKFH-PGYMHTFAMTP--HYFIIVE 277 (476)
Q Consensus 253 ~~~~~~~-p~~iHDfaiTe--ny~V~~~ 277 (476)
+...... ...++..++++ ++++...
T Consensus 73 ~~~~~~~~~~~~~~v~~s~dg~~l~~~~ 100 (337)
T d1pbyb_ 73 DLSTPEERVKSLFGAALSPDGKTLAIYE 100 (337)
T ss_dssp ECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred ecCCCcccccceeeEEEcCCCcEEEEee
Confidence 4321111 12345556553 3554443
No 4
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=16.93 E-value=2.3e+02 Score=22.56 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=43.2
Q ss_pred CCeEEEEeccCCceEEEcCCCCCCCccEEeeCCCCCCCCCcEEEEEEEeCCCCCceEEEEEeCCCCCcceEEEEeCCCCC
Q psy5322 381 PGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPV 460 (476)
Q Consensus 381 ~~~l~K~Dl~tg~~~~w~~~~~~~~EPvFVPrp~~~~EDDG~ll~~v~d~~~~~~s~LlILDA~~l~~vAr~~l~~P~~v 460 (476)
.+.|..+|+.+++...-...+ .+|.-|.= ..|.-+|++. ... ...+.|+|.++.+.++++.+ ..-
T Consensus 223 ~~~v~v~D~~t~~~~~~~~~~---~~~~~va~----spdg~~l~va--~~~---~~~i~v~D~~t~~~~~~~~v---g~~ 287 (301)
T d1l0qa2 223 FNTVSMIDTGTNKITARIPVG---PDPAGIAV----TPDGKKVYVA--LSF---CNTVSVIDTATNTITATMAV---GKN 287 (301)
T ss_dssp CCEEEEEETTTTEEEEEEECC---SSEEEEEE----CTTSSEEEEE--ETT---TTEEEEEETTTTEEEEEEEC---SSS
T ss_pred eeeeeeeecCCCeEEEEEcCC---CCEEEEEE----eCCCCEEEEE--ECC---CCeEEEEECCCCeEEEEEeC---CCC
Confidence 457888999998764322211 23433321 1233466442 322 24799999999888888776 345
Q ss_pred CCCCceeeec
Q psy5322 461 PKCLHGWYFP 470 (476)
Q Consensus 461 P~gfHG~f~~ 470 (476)
|+++ |.|+.
T Consensus 288 P~~~-g~f~~ 296 (301)
T d1l0qa2 288 PYAS-GQFIG 296 (301)
T ss_dssp EECC-SSCEE
T ss_pred CcEe-EEEcc
Confidence 7776 55543
No 5
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=16.22 E-value=30 Score=20.59 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=10.5
Q ss_pred eecC-CCCEEEEEee
Q psy5322 212 LTTS-DGETFNLGVT 225 (476)
Q Consensus 212 k~Dp-~Ge~~~~g~~ 225 (476)
++|| ||++|-+-++
T Consensus 3 R~DP~TG~iYH~~f~ 17 (31)
T d1zaka2 3 RLDPVTGKIYHLKYS 17 (31)
T ss_dssp EECTTTCCEEESSSS
T ss_pred cCCCCCCcEeEEecC
Confidence 5799 9999876543
No 6
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=15.17 E-value=50 Score=30.00 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=23.2
Q ss_pred EEEEEEEeCCCCCceEEEEEeCCCCCcceEEEE
Q psy5322 422 VLLSVLLWSHHPTRVSLLVLNARTMQELGRVNF 454 (476)
Q Consensus 422 ~ll~~v~d~~~~~~s~LlILDA~~l~~vAr~~l 454 (476)
+|++.++... +..+.+.|+|++++++++++.-
T Consensus 375 ~i~vs~~~~~-~~~~~i~v~D~~T~k~~~~i~~ 406 (426)
T d1hzua2 375 EVWFSVWNGK-NDSSALVVVDDKTLKLKAVVKD 406 (426)
T ss_dssp EEEEEECCCT-TSCCEEEEEETTTTEEEEEECC
T ss_pred EEEEEEecCC-CCCCeEEEEECCCCeEEEEECC
Confidence 5655454444 3467899999999998888765
No 7
>d1k91a_ b.104.1.1 (A:) Calreticulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.08 E-value=35 Score=21.13 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=10.2
Q ss_pred CccEEeeCCCCC
Q psy5322 405 SEPVFVATPNAV 416 (476)
Q Consensus 405 ~EPvFVPrp~~~ 416 (476)
+||-|||.|.++
T Consensus 1 ~eP~~IpDp~A~ 12 (37)
T d1k91a_ 1 GKPEHIPDPDAK 12 (37)
T ss_dssp CCCSEEECSSCC
T ss_pred CCccccCCCCCC
Confidence 699999999864
No 8
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=14.56 E-value=1.6e+02 Score=24.03 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=37.0
Q ss_pred CeEEEEeccCCceEEEcCCCCCCCccEEeeCCCCCCCCCcEEEEEEEeCCCCCceEEEEEeCCCCCcceEEEEeCCC
Q psy5322 382 GTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPT 458 (476)
Q Consensus 382 ~~l~K~Dl~tg~~~~w~~~~~~~~EPvFVPrp~~~~EDDG~ll~~v~d~~~~~~s~LlILDA~~l~~vAr~~l~~P~ 458 (476)
+.|..+|+.+++...-...+..+.-..|= .|.-+|.+ -. . .+.|.|+|++++++++++.+ |.
T Consensus 260 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s-------~dG~~l~v--~~-~---~~~i~v~D~~t~~~v~~i~~--~g 321 (337)
T d1pbyb_ 260 NVLESFDLEKNASIKRVPLPHSYYSVNVS-------TDGSTVWL--GG-A---LGDLAAYDAETLEKKGQVDL--PG 321 (337)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEEC-------TTSCEEEE--ES-B---SSEEEEEETTTCCEEEEEEC--GG
T ss_pred ccEEEEECCCCcEEEEEcCCCCEEEEEEC-------CCCCEEEE--Ee-C---CCcEEEEECCCCcEEEEEEC--CC
Confidence 46888999988765443221111112222 23334443 12 2 24699999999999999998 64
No 9
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=13.94 E-value=1.9e+02 Score=23.28 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=41.4
Q ss_pred cEEEEeecCCCCCCCCeEEEEeccCCceEEEcCCCCCCCccEEeeCCCCCCCCCcEEEEEEEeCCCCCceEEEEEeCCCC
Q psy5322 367 TYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNARTM 446 (476)
Q Consensus 367 Ry~Y~~~~~~~~~~~~~l~K~Dl~tg~~~~w~~~~~~~~EPvFVPrp~~~~EDDG~ll~~v~d~~~~~~s~LlILDA~~l 446 (476)
-|+|.+... -+.|..+|++|++...-..- ...|.=|- -..|..+|++. ... ...+.|+|..+.
T Consensus 2 ~~~yV~~~~-----~~~v~v~D~~t~~~~~~i~~---g~~p~~va----~spdG~~l~v~--~~~---~~~i~v~d~~t~ 64 (301)
T d1l0qa2 2 TFAYIANSE-----SDNISVIDVTSNKVTATIPV---GSNPMGAV----ISPDGTKVYVA--NAH---SNDVSIIDTATN 64 (301)
T ss_dssp EEEEEEETT-----TTEEEEEETTTTEEEEEEEC---SSSEEEEE----ECTTSSEEEEE--EGG---GTEEEEEETTTT
T ss_pred eEEEEEECC-----CCEEEEEECCCCeEEEEEEC---CCCceEEE----EeCCCCEEEEE--ECC---CCEEEEEECCCC
Confidence 488875433 35799999999986432211 12343221 12244566532 222 247999999988
Q ss_pred CcceEEEE
Q psy5322 447 QELGRVNF 454 (476)
Q Consensus 447 ~~vAr~~l 454 (476)
+.+.++..
T Consensus 65 ~~~~~~~~ 72 (301)
T d1l0qa2 65 NVIATVPA 72 (301)
T ss_dssp EEEEEEEC
T ss_pred ceeeeeec
Confidence 77776655
No 10
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}
Probab=11.71 E-value=1.9e+02 Score=23.68 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=37.5
Q ss_pred CeEEEEeccCCceEEEcCCCCCCCccEEeeCCCCCCCCCcEEEEEEEeCCCCCceEEEEEeCCCCCcceEEEEeCC
Q psy5322 382 GTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTP 457 (476)
Q Consensus 382 ~~l~K~Dl~tg~~~~w~~~~~~~~EPvFVPrp~~~~EDDG~ll~~v~d~~~~~~s~LlILDA~~l~~vAr~~l~~P 457 (476)
+.|..+|+.+++...-...+..+.--.|=| |.-+|.+ -. . ...+.|+|+++++.++++.+ |
T Consensus 272 ~~v~v~d~~~~~~~~~~~~~~~~~~va~s~-------DG~~l~v--~~-~---d~~v~v~D~~t~~~i~~i~~--p 332 (346)
T d1jmxb_ 272 NRLAKYDLKQRKLIKAANLDHTYYCVAFDK-------KGDKLYL--GG-T---FNDLAVFNPDTLEKVKNIKL--P 332 (346)
T ss_dssp SEEEEEETTTTEEEEEEECSSCCCEEEECS-------SSSCEEE--ES-B---SSEEEEEETTTTEEEEEEEC--S
T ss_pred CeEEEEECCCCcEEEEEcCCCCEEEEEEcC-------CCCEEEE--Ee-C---CCcEEEEECccCCEEEEEEC--C
Confidence 568888998887644322222233333433 2234433 12 1 24799999999999999998 7
Done!