RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5322
(476 letters)
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid
cleavage, retinal forma oxidoreductase, dioxygenase;
HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Length = 490
Score = 288 bits (739), Expect = 2e-92
Identities = 107/496 (21%), Positives = 192/496 (38%), Gaps = 84/496 (16%)
Query: 38 FDNVDAGVWFRDCHTEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSG 97
+ D ++ E D VEG IP + G L RNGPG +G+ H FD G
Sbjct: 15 YSPQDWLRGYQSQPQEWD-YWVEDVEGSIPPDLQGTLYRNGPGLLEIGDRPLKHPFDGDG 73
Query: 98 LLHRFKISS-GLVTYQCKFIKSESYIKNHAARRIVVTG-FGTRFVPDPCASIFQRIATLF 155
++ FK G V +Q KF++++ Y++ A +++ G FG++ +IF
Sbjct: 74 MVTAFKFPGDGRVHFQSKFVRTQGYVEEQKAGKMIYRGVFGSQPAGGWLKTIFDL----- 128
Query: 156 KPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLEKMDLARDVTI-LHQTSHPL-- 212
+ ++ D++ AL + HR++P+ L T+ DL + ++HP
Sbjct: 129 -RLKNIANTNITYWGDRLLALWEGGQPHRLEPSNLATIGLDDLGGILAEGQPLSAHPRID 187
Query: 213 ---TTSDGETFNLGVTLRPTGPRYCILQLNDVADHRVKLVTSVPVRWKFHPGYMHTFAMT 269
T G+ + +++ + L D + KL+ + ++H FA+T
Sbjct: 188 PASTFDGGQPCYVTFSIKSSLSSTLTL---LELDPQGKLLRQKTETFP-GFAFIHDFAIT 243
Query: 270 PHYFIIVEQPLSISVPRLIKNSVTNRPLATCLKFF-EKQSNIHSTPR------------- 315
PHY I ++ ++++ + R C++F +K + I PR
Sbjct: 244 PHYAIFLQNNVTLNGLPYLFG---LRGAGECVQFHPDKPAQIILVPRDGGEIKRIPVQAG 300
Query: 316 --------------------------------------YAQMFRARPLRFRLDLASPRTA 337
+ + + RF +D A
Sbjct: 301 FVFHHANAFEENGKIILDSICYNSLPQVDTDGDFRSTNFDNLDPGQLWRFTIDPA----- 355
Query: 338 PTGKVRPSVICDVGCETPRMNGQHQGRPYTYFYAISADIDRDNP--GTLIKVNVQNNTCK 395
V ++ CE P ++ Q GRPY Y Y +A N ++KV++++ T
Sbjct: 356 -AATVEKQLMVSRCCEFPVVHPQQVGRPYRYVYMGAAHHSTGNAPLQAILKVDLESGTET 414
Query: 396 SWSQKD-VYPSEPVFVATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNF 454
S + EP+FV P V ED+G LL + ++ R L++L+A+ +
Sbjct: 415 LRSFAPHGFAGEPIFVPRPGGVAEDDGWLLCL-IYKADLHRSELVILDAQDITAPAIATL 473
Query: 455 TTPTPVPKCLHGWYFP 470
+P LHG +
Sbjct: 474 KLKHHIPYPLHGSWAQ 489
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic
membrane protein, sensory transduction, vision,
isomerase, non-heme iron protein; 1.90A {Bos taurus}
PDB: 3fsn_A
Length = 533
Score = 219 bits (560), Expect = 1e-65
Identities = 89/277 (32%), Positives = 153/277 (55%), Gaps = 11/277 (3%)
Query: 52 TEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISSGLVTY 111
E+ P+ V G IP W+ G L+R GPG + VG E F HLFD LLH+F G VTY
Sbjct: 20 EELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTY 79
Query: 112 QCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFKP--GSDNTLVSVYPI 169
+FI++++Y++ +RIV+T FGT PDPC +IF R + F+ +DN LV++YP+
Sbjct: 80 HRRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGVEVTDNALVNIYPV 139
Query: 170 QDQVYALGDSNYMHRIDPATLDTLEKMDLARDVTILHQTSHPLTTSDGETFNLGVTL-RP 228
+ YA ++N++ +++P TL+T++++DL V++ T+HP +DG +N+G +
Sbjct: 140 GEDYYACTETNFITKVNPETLETIKQVDLCNYVSVNGATAHPHIENDGTVYNIGNCFGKN 199
Query: 229 TGPRYCILQLN------DVADHRVKLVTSVPVRWKFHPGYMHTFAMTPHYFIIVEQPLSI 282
Y I+++ + + ++V P +F P Y+H+F +TP+Y + VE P+ I
Sbjct: 200 FSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKI 259
Query: 283 SVPRLIK-NSVTNRPLATCLKFF-EKQSNIHSTPRYA 317
++ + + S+ C + +H +
Sbjct: 260 NLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKR 296
Score = 109 bits (273), Expect = 8e-26
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 29/182 (15%)
Query: 314 PRYAQMFRARPLRFRLDLASPRTAP--------------------TGKVRPSVIC---DV 350
+ + R+ L L + T + P V+
Sbjct: 355 KNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQ 414
Query: 351 GCETPRMNGQHQG-RPYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVF 409
E P++N Q G +PYTY Y + + P L K+NV+ W + D YPSEP+F
Sbjct: 415 AFEFPQINYQKYGGKPYTYAYGLGLN--HFVPDRLCKLNVKTKETWVWQEPDSYPSEPIF 472
Query: 410 VATPNAVKEDEGVLLSVLLWSHHPTRVS-LLVLNARTMQELGRVNFTTPTPVPKCLHGWY 468
V+ P+A++ED+GV+LSV++ + + LL+LNA+ + E+ R +P HG +
Sbjct: 473 VSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEV--EINIPVTFHGLF 530
Query: 469 FP 470
Sbjct: 531 KK 532
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta
propeller, abscisic acid, non iron, oxidoreductase;
3.20A {Zea mays}
Length = 529
Score = 194 bits (493), Expect = 5e-56
Identities = 86/485 (17%), Positives = 150/485 (30%), Gaps = 73/485 (15%)
Query: 47 FRDCHTEVDQPVQGTVEGVIPSWIDGVLIRNGPGSWNVGEESFDHLFDCSGLLHRFKISS 106
F + V G IP +IDGV RNG + HLFD G++H +I +
Sbjct: 52 FAPVGERPP-VHELPVSGRIPPFIDGVYARNGAN-PCFDPVAGHHLFDGDGMVHALRIRN 109
Query: 107 G-LVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDP----CASIFQRIATLFKPGSDN 161
G +Y C+F ++ + A R V A + R A S
Sbjct: 110 GAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAG 169
Query: 162 TLV---SVYPIQDQVYAL---GDSNYMHRIDPATLDTLEKMDLARDVTILHQTSHPLTTS 215
T V + ++ A+ ++ D L+T+ + D + L +
Sbjct: 170 TGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPA 229
Query: 216 DGETFNLGVTLRPTGPRYCILQLNDVADHRVKLVTSVPVRWKFHPGYMHTFAMTPHYFII 275
GE L Y D +P+ P +H FA+T + ++
Sbjct: 230 TGELHALSY--DVIKRPYLKYFYFR-PDGTKSDDVEIPLEQ---PTMIHDFAITENLVVV 283
Query: 276 VEQPLSISVPRLIKNS----------------VTNRPLATCLKFFE-------------- 305
+ + + +++ + A+ + + +
Sbjct: 284 PDHQVVFKLQEMLRGGSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWE 343
Query: 306 -------------KQSNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGC 352
+ + RLD + R+ T + V
Sbjct: 344 DEATGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGRS--TRRAVLPPSQQVNL 401
Query: 353 ETPRMNGQHQGRPYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKD-VYPSEPVFV- 410
E +N GR Y Y A+ KV++ + + + EP FV
Sbjct: 402 EVGMVNRNLLGRETRYAYLAVAE-PWPKVSGFAKVDLSTGELTKFEYGEGRFGGEPCFVP 460
Query: 411 ---ATPNAVKEDEGVLLSVLLWSHHPTRVSLLVLNARTMQELGRVNFTTPTPVPKCLHGW 467
A + ED+G +L+ + LLV+NA M+ V P+ VP HG
Sbjct: 461 MDPAAAHPRGEDDGYVLTFVHDERA-GTSELLVVNAADMRLEATVQL--PSRVPFGFHGT 517
Query: 468 YFPHE 472
+ +
Sbjct: 518 FITGQ 522
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 1e-08
Identities = 72/532 (13%), Positives = 150/532 (28%), Gaps = 177/532 (33%)
Query: 14 YFHHLDNDATIAALERRVENGDSIFDNVDAGVWFRDCHTEVDQPVQGTVEGVIPSW-IDG 72
+ HH+D + E + + D + DA V DC + VQ + ++ ID
Sbjct: 3 HHHHMDFETG----EHQYQYKDILSVFEDAFVDNFDC-----KDVQDMPKSILSKEEIDH 53
Query: 73 VLIRNGPGSWNVGEESFDHLFDC-----SGLLHRFKISSGL----------VTYQCK--- 114
+++ LF ++ +F + L + + +
Sbjct: 54 IIMSKDA------VSGTLRLFWTLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPS 106
Query: 115 -----FIK--------SESYIKNHAARR------------------IVV---TGFG-TRF 139
+I+ ++ + K + +R +++ G G T
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 140 VPDPCASIFQRIATLF-------KPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDT 192
D C S ++ + N+ +V + ++ D N+ R D ++
Sbjct: 167 ALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 193 LEKMDL-ARDVTILHQTSHPLTTSDGETFNLGVTLRPTGPRYCILQLNDVADHRV----- 246
L + A +L + C+L L +V + +
Sbjct: 225 LRIHSIQAELRRLLKSKPYE---------------------NCLLVLLNVQNAKAWNAFN 263
Query: 247 ---K-LVTSVPVRWKFHPGYMHTFAMTPHYFIIVEQPLSISVPRLIKNSVTNR-PLATCL 301
K L+T+ R+K V + + T L
Sbjct: 264 LSCKILLTT---RFK-------------------------QVTDFLSAATTTHISLDHHS 295
Query: 302 KFFEKQSNIHSTPRYAQMFRARPLRFRL-DLASPRTAPTGKVRPSVICDVGCETPRMNGQ 360
TP + + L R DL PR P + +
Sbjct: 296 MTL--------TPDEVKSLLLKYLDCRPQDL--PREVL--TTNPRRLSIIAESIRDGLAT 343
Query: 361 HQGRPYTYFYAISADIDRDNPGTLIKVNVQNNTCKSWSQKDVYPSEPVFVATPNAVKEDE 420
+ + ++ D T+I+ ++ N + + ++ VF P +
Sbjct: 344 -----WDNW----KHVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVF---PPSAHIPT 389
Query: 421 GVLLSVLLWSHHPTRVSLLVLN---ARTMQELGRVNFTTPTPVPKCLHGWYF 469
+L L+W ++V+N ++ E T + Y
Sbjct: 390 ILL--SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS------IPSIYL 433
Score = 32.9 bits (74), Expect = 0.28
Identities = 48/290 (16%), Positives = 85/290 (29%), Gaps = 82/290 (28%)
Query: 4 RGRQVVDI--ARYFHHLDNDATIAALERRVENGDSIFDNVDAGVWFRDCHTEVDQPVQGT 61
R +QV D A H+ D L + S+ + DC + D P +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLLLK-----YL-DCRPQ-DLPRE-- 321
Query: 62 VEGVIPSWID--GVLIRNGPGSWN------------VGEESFDHLFDCSGLLHRF----- 102
V P + IR+G +W+ + E S + L + + F
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSV 380
Query: 103 -----KISSG-LVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLFK 156
I + L IKS+ +VV +L +
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDV--------MVVVNKLHKY--------------SLVE 418
Query: 157 PGSDNTLVSVYPIQDQVYALGDSNY-MHR--ID----PATLDTLEKMDLARDVTILHQTS 209
+ +S+ I ++ ++ Y +HR +D P T D+ + + D
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 210 HPLTTSD-GETFN-----------LGVTLRPTGPRYCILQ--LNDVADHR 245
H L + E L +R + LN + +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 1e-05
Identities = 54/304 (17%), Positives = 93/304 (30%), Gaps = 141/304 (46%)
Query: 22 ATIAALERRVENGDSIFDNVDAGV----W--FRDCH----------TEVDQPVQGTVEGV 65
IA ++ +S F +V + + R C+ + ++ ++ EGV
Sbjct: 281 VAIAE----TDSWESFFVSVRKAITVLFFIGVR-CYEAYPNTSLPPSILEDSLENN-EGV 334
Query: 66 IPS---------------WIDGV-------------LIRNGPGSWNV-GE-ESFDHLFDC 95
PS +++ L+ NG + V G +S L
Sbjct: 335 -PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV-NGAKNLVVSGPPQSLYGL--- 389
Query: 96 SGLLHRFKISSGLVTYQCKFIKSESYIKNHAARRIVVTGFGTRFVPDPCASIFQRIATLF 155
+ L + K SGL Q + I + R++ F RF+P
Sbjct: 390 NLTLRKAKAPSGL--DQSR-------IP-FSERKLK---FSNRFLP-------------- 422
Query: 156 KPGSDNTLVSVYPIQDQVYALGDSNYMHRIDPATLDTLEKMDLARDVTILHQTSHPLT-- 213
V+ P S+ + PA+ D + K DL ++ + +
Sbjct: 423 --------VAS-PFH--------SHLL---VPAS-DLINK-DLVKNNVSFNAKD--IQIP 458
Query: 214 ---TSDGETFNLGVTLRPTGPRYCILQLNDVADHR-VKLVTSVPVRWK------------ 257
T DG LR L+ R V + +PV+W+
Sbjct: 459 VYDTFDGSD------LR---------VLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 258 FHPG 261
F PG
Sbjct: 504 FGPG 507
Score = 41.2 bits (96), Expect = 7e-04
Identities = 54/375 (14%), Positives = 97/375 (25%), Gaps = 165/375 (44%)
Query: 208 TSHPLTTSDGETFNLGVTLR-PTGPRYCILQLNDVADHRVKLVTSVPVRWKFHPGYMHTF 266
++ PLT S G +L L PT + QL + +F+
Sbjct: 5 STRPLTLSHG---SLEHVLLVPTASFFIASQLQE----------------QFN----KIL 41
Query: 267 AMTPHYFIIVEQPLSIS---------VPRLIKNSVTNRP---LATCLKFFEKQ----SNI 310
F ++P + + V L++ S + L CL FE ++I
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI 101
Query: 311 HS------------TPRYAQMFRA---------RPLRFRLDLASPRTAPTGKVRPSVICD 349
H+ + ++ + RP + + A R G + I
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-- 159
Query: 350 VGCETPRMNGQHQGRPYTYF------YAISA----------------------------- 374
GQ G YF Y
Sbjct: 160 -------FGGQ--GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 375 ---DIDR--DNPGT---------------LIKVNVQ----NNTCKS--WSQKDVYP---- 404
+I +NP LI V +Q T K ++ ++
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGV-IQLAHYVVTAKLLGFTPGELRSYLKG 269
Query: 405 ----SEPVFVATP------------NAVKEDEGVLLSVLLW----SHHPTRVSLLVLNAR 444
S+ + A + K ++VL + + + L
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRK-----AITVLFFIGVRCYEAYPNT--SLPPS 322
Query: 445 TMQELGRVNFTTPTP 459
+++ N P+P
Sbjct: 323 ILEDSLENNEGVPSP 337
Score = 38.5 bits (89), Expect = 0.005
Identities = 63/394 (15%), Positives = 117/394 (29%), Gaps = 124/394 (31%)
Query: 87 ESFDHLFDCSGLLHRFKISSGLVTYQCKFIKSESYIKNH-AARRIVVTGFGTRFVPDPCA 145
F++ + +H + L +K++ IKN+ AR + R
Sbjct: 89 TEFENCYLEGNDIHAL-AAKLLQENDTTLVKTKELIKNYITARIMA-----KRPFDKKSN 142
Query: 146 SIFQRIATLFKPGSDNTLVSVYPI---QDQVYALGDSN-YMHRIDPATLDTLEKMDLARD 201
S LF+ + + I Q G+++ Y + L RD
Sbjct: 143 SA------LFRAVGEGN-AQLVAIFGGQ------GNTDDY--------FEEL------RD 175
Query: 202 VTILHQTSHP----LTTSDGETFNLGVTLRPTGPRYC-----ILQ-LNDVAD-HRVKLVT 250
L+QT H L ET + + + IL+ L + ++ +
Sbjct: 176 ---LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 251 SVPVRWKFHPG-YMHTFAMTPHYFIIVEQPLSISVPRLIKN--SVTNR----PLATCL-- 301
S+P+ P + A HY + + L + L T A +
Sbjct: 233 SIPISC---PLIGVIQLA---HYVVTAKL-LGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 302 -----KFFEKQSNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVICDVGCETPR 356
FF ++ F + + P + PS++ D
Sbjct: 286 TDSWESFFV---SVRKAITVL---------FFIGVRCYEAYPNTSLPPSILED--SLE-- 329
Query: 357 MNGQHQGRPYTYFYAISADIDRDNPGTLI-KVNVQNNTCKSWSQKDVYPSEPVFVA---T 412
N +G P + +IS ++ ++ + K N + + V ++
Sbjct: 330 -NN--EGVP-SPMLSIS-NLTQEQVQDYVNKTN-----------SHLPAGKQVEISLVNG 373
Query: 413 PNAVKEDEGVLLSVLLWSHHPTRVSL--LVLNAR 444
+ V+ S P SL L L R
Sbjct: 374 AKNL-----VV------SGPP--QSLYGLNLTLR 394
Score = 30.8 bits (69), Expect = 1.3
Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 34/110 (30%)
Query: 367 TYFYAISADIDRDNPGTL-----------IKVNVQNNTCKSWSQKDVYPSEPVF-VATPN 414
TY ++I DI +NP L I+ N ++ + +E +F +
Sbjct: 1656 TYGFSIL-DIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL-KTEKIFKEINEH 1713
Query: 415 AVK----EDEGVLLS-------VLLWSHHPTRVSLLVLNARTMQELGRVN 453
+ ++G+L + + L + ++ G +
Sbjct: 1714 STSYTFRSEKGLLSATQFTQPALTLME-----KAAF----EDLKSKGLIP 1754
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.006
Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 13/42 (30%)
Query: 305 EKQSNIHSTPRYAQMFRARPLRFRLDLASPRTAPTGKVRPSV 346
EKQ+ + + L+ L L + +AP ++ ++
Sbjct: 18 EKQA-L------------KKLQASLKLYADDSAPALAIKATM 46
>1ne8_A Conserved hypothetical protein YDCE; structural genomics, NEW YORK
SGX research center for structural genomics, PSI; HET:
1PG; 2.10A {Bacillus subtilis} SCOP: b.34.6.2
Length = 117
Score = 28.0 bits (63), Expect = 2.9
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 230 GPRYC-ILQLNDVADHRVKLVTSVPVRWKFH----PGYMHTFAMTPHY----FIIVEQPL 280
G R ++Q ND+ + + + P ++ A + I++EQ
Sbjct: 24 GVRPVLVIQ-NDIGNRFSPTAIVAAITAQIQKAKLPTHVEIDAKRYGFERDSVILLEQIR 82
Query: 281 SISVPRLIK 289
+I RL
Sbjct: 83 TIDKQRLTD 91
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 27.6 bits (62), Expect = 9.2
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 185 IDPATLDTLEKMDLARDVTILHQTSHP 211
I+ L + L R+ I HP
Sbjct: 44 INTKKLSARDHQKLEREARICRLLKHP 70
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.433
Gapped
Lambda K H
0.267 0.0734 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,527,180
Number of extensions: 448573
Number of successful extensions: 955
Number of sequences better than 10.0: 1
Number of HSP's gapped: 927
Number of HSP's successfully gapped: 18
Length of query: 476
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 379
Effective length of database: 3,993,456
Effective search space: 1513519824
Effective search space used: 1513519824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)