RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5322
         (476 letters)



>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
           [TaxId: 4682]}
          Length = 425

 Score = 28.1 bits (62), Expect = 2.7
 Identities = 2/35 (5%), Positives = 10/35 (28%)

Query: 314 PRYAQMFRARPLRFRLDLASPRTAPTGKVRPSVIC 348
               + F  +   +  + A+       +    ++ 
Sbjct: 169 REQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVT 203


>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
           beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
           [TaxId: 1902]}
          Length = 216

 Score = 26.5 bits (57), Expect = 6.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 128 RRIVVTGFGTRF 139
           RR+V+TG G R 
Sbjct: 1   RRVVITGVGVRA 12


>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II
           {Synechocystis sp. [TaxId: 1143]}
          Length = 250

 Score = 26.4 bits (57), Expect = 6.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 128 RRIVVTGFGTRF 139
           +R+VVTG G   
Sbjct: 2   KRVVVTGLGAIT 13


>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II
           {Escherichia coli [TaxId: 562]}
          Length = 250

 Score = 25.9 bits (56), Expect = 9.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 128 RRIVVTGFGTRF 139
           RR+VVTG G   
Sbjct: 2   RRVVVTGLGMLS 13


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.433 

Gapped
Lambda     K      H
   0.267   0.0417    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,853,820
Number of extensions: 87214
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 12
Length of query: 476
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 387
Effective length of database: 1,185,626
Effective search space: 458837262
Effective search space used: 458837262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)