BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5323
         (110 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
           Mn2+
 pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
           Galnac-ser On Lectin Domain
          Length = 570

 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 23/45 (51%)

Query: 66  LPPKVRLIRLKEXXXXXXXXXXXXENAKGDVLMFLDSHCELGTNW 110
           L P VR++R K+              A GDV+ FLDSHCE   NW
Sbjct: 169 LFPSVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNW 213



 Score = 30.8 bits (68), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 14  LPPKVRLIRLKEXXXXXXXXXXXXENAKGDVLMFLDSHYE 53
           L P VR++R K+              A GDV+ FLDSH E
Sbjct: 169 LFPSVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCE 208


>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
           Acetylgalactosaminyltransferase-T1
          Length = 472

 Score = 32.3 bits (72), Expect = 0.077,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 54  LQGKLDYYIQTRLPPKVRLIRLKEXXXXXXXXXXXXENAKGDVLMFLDSHCELGTNW 110
           L+  L+ Y++ +L   V +IR+++              ++G V+ FLD+HCE    W
Sbjct: 76  LKRPLESYVK-KLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGW 131


>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
           And Ea2
 pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
 pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
          Length = 501

 Score = 32.0 bits (71), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 69  KVRLIRLKEXXXXXXXXXXXXENAKGDVLMFLDSHCELGTNW 110
           KVR++R               + A+  VL FLDSHCE   +W
Sbjct: 122 KVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHW 163


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.142    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,490,044
Number of Sequences: 62578
Number of extensions: 60470
Number of successful extensions: 72
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 6
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)