Query psy5323
Match_columns 110
No_of_seqs 162 out of 1165
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 23:42:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10073 putative glycosyl tra 99.8 3.2E-19 6.9E-24 134.5 10.9 93 15-110 6-102 (328)
2 cd02510 pp-GalNAc-T pp-GalNAc- 99.8 1.1E-18 2.3E-23 129.0 10.3 92 19-110 2-100 (299)
3 PRK10018 putative glycosyl tra 99.8 8.3E-18 1.8E-22 124.6 12.0 97 14-110 4-102 (279)
4 cd06442 DPM1_like DPM1_like re 99.8 4.9E-18 1.1E-22 119.1 8.9 90 19-110 1-95 (224)
5 PF00535 Glycos_transf_2: Glyc 99.7 5.7E-18 1.2E-22 112.1 7.3 90 19-110 2-95 (169)
6 cd04195 GT2_AmsE_like GT2_AmsE 99.7 2.1E-17 4.5E-22 114.4 9.3 89 19-110 2-97 (201)
7 cd04196 GT_2_like_d Subfamily 99.7 5.4E-17 1.2E-21 112.6 10.4 91 19-110 2-96 (214)
8 cd06913 beta3GnTL1_like Beta 1 99.7 4.9E-17 1.1E-21 114.6 9.8 91 19-110 1-101 (219)
9 cd06427 CESA_like_2 CESA_like_ 99.7 1.1E-16 2.3E-21 114.8 9.6 95 15-110 1-101 (241)
10 cd04184 GT2_RfbC_Mx_like Myxoc 99.7 1.6E-16 3.6E-21 109.8 10.2 94 15-110 1-100 (202)
11 cd04188 DPG_synthase DPG_synth 99.7 1.1E-16 2.3E-21 112.3 8.7 91 19-110 1-99 (211)
12 KOG3737|consensus 99.7 6.4E-17 1.4E-21 124.1 7.6 100 9-110 150-257 (603)
13 KOG3736|consensus 99.7 2.9E-17 6.2E-22 131.1 5.9 96 13-110 140-243 (578)
14 cd04179 DPM_DPG-synthase_like 99.7 1.2E-16 2.7E-21 108.9 8.0 89 20-110 2-96 (185)
15 cd06423 CESA_like CESA_like is 99.7 2.2E-16 4.8E-21 104.3 8.9 91 19-110 1-95 (180)
16 KOG3738|consensus 99.7 6.7E-17 1.5E-21 124.0 7.1 95 12-110 121-221 (559)
17 PRK10063 putative glycosyl tra 99.7 2.9E-16 6.2E-21 114.3 9.9 89 17-109 3-98 (248)
18 cd06437 CESA_CaSu_A2 Cellulose 99.7 4.9E-16 1.1E-20 110.3 10.7 95 15-110 1-104 (232)
19 cd06433 GT_2_WfgS_like WfgS an 99.7 5.8E-16 1.3E-20 105.8 9.9 87 19-110 2-92 (202)
20 PRK11204 N-glycosyltransferase 99.7 1E-15 2.2E-20 117.8 11.2 95 14-110 53-151 (420)
21 PLN02726 dolichyl-phosphate be 99.7 8E-16 1.7E-20 110.6 10.0 96 14-110 8-110 (243)
22 cd06439 CESA_like_1 CESA_like_ 99.7 1.1E-15 2.5E-20 109.2 10.1 93 14-110 28-126 (251)
23 cd04187 DPM1_like_bac Bacteria 99.7 5.3E-16 1.2E-20 106.2 7.9 89 20-110 2-97 (181)
24 cd02526 GT2_RfbF_like RfbF is 99.6 6.4E-16 1.4E-20 109.3 8.1 86 20-110 2-92 (237)
25 COG0463 WcaA Glycosyltransfera 99.6 2.3E-15 5E-20 99.3 10.0 93 14-109 2-98 (291)
26 cd06420 GT2_Chondriotin_Pol_N 99.6 2E-15 4.3E-20 102.8 9.0 90 20-110 2-96 (182)
27 cd04192 GT_2_like_e Subfamily 99.6 2.1E-15 4.6E-20 105.6 9.3 91 19-110 1-99 (229)
28 cd02520 Glucosylceramide_synth 99.6 3.1E-15 6.8E-20 104.2 10.0 95 15-110 1-103 (196)
29 TIGR03111 glyc2_xrt_Gpos1 puta 99.6 2.9E-15 6.3E-20 116.7 10.7 95 14-110 48-148 (439)
30 PRK14583 hmsR N-glycosyltransf 99.6 4.3E-15 9.4E-20 115.7 11.0 95 14-110 74-172 (444)
31 cd02525 Succinoglycan_BP_ExoA 99.6 5E-15 1.1E-19 104.8 10.1 91 17-110 2-98 (249)
32 TIGR03469 HonB hopene-associat 99.6 8E-15 1.7E-19 112.4 10.8 97 13-110 38-150 (384)
33 cd04185 GT_2_like_b Subfamily 99.6 6.5E-15 1.4E-19 102.2 9.0 88 20-110 2-96 (202)
34 PTZ00260 dolichyl-phosphate be 99.6 9E-15 2E-19 110.6 10.2 93 16-109 71-178 (333)
35 cd06421 CESA_CelA_like CESA_Ce 99.6 1.3E-14 2.9E-19 102.1 9.8 93 15-110 1-101 (234)
36 cd06434 GT2_HAS Hyaluronan syn 99.6 1.1E-14 2.3E-19 102.9 9.1 89 18-110 3-94 (235)
37 cd04186 GT_2_like_c Subfamily 99.6 1.3E-14 2.7E-19 96.6 8.5 86 20-110 2-91 (166)
38 PRK10714 undecaprenyl phosphat 99.6 2.3E-14 4.9E-19 108.1 10.3 94 15-109 6-106 (325)
39 cd06435 CESA_NdvC_like NdvC_li 99.6 2.1E-14 4.6E-19 101.8 9.4 91 19-110 2-101 (236)
40 cd02511 Beta4Glucosyltransfera 99.6 2.1E-14 4.4E-19 102.6 9.4 85 17-110 2-88 (229)
41 cd06436 GlcNAc-1-P_transferase 99.6 2.4E-14 5.3E-19 99.6 8.7 89 19-110 1-106 (191)
42 TIGR01556 rhamnosyltran L-rham 99.5 3.9E-14 8.4E-19 103.6 8.7 83 24-110 4-90 (281)
43 cd06438 EpsO_like EpsO protein 99.5 3.8E-14 8.3E-19 97.6 7.7 87 19-110 1-98 (183)
44 PRK13915 putative glucosyl-3-p 99.5 5.5E-14 1.2E-18 105.4 7.5 96 14-110 30-133 (306)
45 TIGR03472 HpnI hopanoid biosyn 99.5 2.7E-13 5.9E-18 103.5 10.7 96 14-110 40-143 (373)
46 cd02522 GT_2_like_a GT_2_like_ 99.5 1.7E-13 3.7E-18 95.8 8.5 84 18-110 2-89 (221)
47 PF13641 Glyco_tranf_2_3: Glyc 99.5 1.2E-13 2.6E-18 97.3 6.1 95 15-110 1-103 (228)
48 PF10111 Glyco_tranf_2_2: Glyc 99.4 1.2E-12 2.6E-17 96.6 8.7 89 19-109 2-104 (281)
49 COG1215 Glycosyltransferases, 99.3 1.9E-11 4.2E-16 93.7 9.6 95 15-110 54-154 (439)
50 PRK11498 bcsA cellulose syntha 99.3 1.9E-11 4E-16 102.0 9.1 90 14-110 259-356 (852)
51 TIGR03030 CelA cellulose synth 99.3 4E-11 8.7E-16 98.6 10.6 94 14-110 130-245 (713)
52 cd00761 Glyco_tranf_GTA_type G 99.3 7.7E-11 1.7E-15 75.9 9.8 89 20-110 2-94 (156)
53 KOG2978|consensus 99.1 2.9E-10 6.3E-15 80.3 8.1 89 19-108 7-103 (238)
54 PRK14716 bacteriophage N4 adso 99.0 3.1E-09 6.7E-14 84.7 10.6 95 14-110 65-175 (504)
55 COG1216 Predicted glycosyltran 99.0 2.2E-09 4.8E-14 79.9 9.0 92 15-110 3-101 (305)
56 KOG2977|consensus 98.9 4E-09 8.7E-14 78.4 7.2 89 16-105 68-169 (323)
57 cd04190 Chitin_synth_C C-termi 98.9 1.9E-09 4.1E-14 77.8 5.0 74 20-110 2-90 (244)
58 PRK11234 nfrB bacteriophage N4 98.7 1.2E-07 2.5E-12 78.6 10.5 93 15-109 63-171 (727)
59 cd04191 Glucan_BSP_ModH Glucan 98.7 2E-07 4.3E-12 68.4 9.2 91 19-110 3-112 (254)
60 cd02514 GT13_GLCNAC-TI GT13_GL 98.5 8.6E-07 1.9E-11 67.6 8.9 86 19-109 4-113 (334)
61 KOG3737|consensus 98.4 4.1E-07 8.9E-12 70.7 4.4 62 1-63 201-263 (603)
62 PRK15489 nfrB bacteriophage N4 98.2 1.5E-05 3.3E-10 66.0 10.8 93 15-109 71-179 (703)
63 PRK05454 glucosyltransferase M 98.2 1.4E-05 3E-10 66.2 10.5 92 17-109 126-236 (691)
64 KOG3736|consensus 98.0 4.6E-06 1E-10 67.5 4.0 62 2-66 189-251 (578)
65 KOG3738|consensus 97.1 0.00075 1.6E-08 53.0 4.7 52 13-66 177-229 (559)
66 PF13704 Glyco_tranf_2_4: Glyc 97.1 0.0063 1.4E-07 37.6 7.9 76 27-108 4-86 (97)
67 PF13712 Glyco_tranf_2_5: Glyc 96.8 0.00074 1.6E-08 48.5 1.8 38 70-107 31-68 (217)
68 COG4092 Predicted glycosyltran 96.0 0.034 7.4E-07 41.8 6.8 65 41-107 37-108 (346)
69 PF13506 Glyco_transf_21: Glyc 95.4 0.02 4.4E-07 39.6 3.5 39 72-110 6-48 (175)
70 KOG2547|consensus 94.4 0.38 8.2E-06 37.7 8.3 67 42-109 114-186 (431)
71 cd00218 GlcAT-I Beta1,3-glucur 93.9 0.94 2E-05 33.0 9.1 89 17-107 3-109 (223)
72 TIGR03202 pucB xanthine dehydr 93.2 1.4 2.9E-05 30.3 8.8 80 25-106 24-108 (190)
73 PF03452 Anp1: Anp1; InterPro 93.2 0.59 1.3E-05 34.9 7.3 91 17-108 27-157 (269)
74 PF11397 GlcNAc: Glycosyltrans 92.7 0.15 3.2E-06 39.3 3.6 42 69-110 89-133 (343)
75 PF06306 CgtA: Beta-1,4-N-acet 92.5 0.37 8E-06 37.0 5.4 89 17-107 89-189 (347)
76 PF03214 RGP: Reversibly glyco 92.3 0.12 2.7E-06 39.6 2.6 30 81-110 79-108 (348)
77 COG2068 Uncharacterized MobA-r 92.2 2 4.3E-05 30.8 8.5 77 25-105 29-108 (199)
78 cd06422 NTP_transferase_like_1 91.6 1.2 2.7E-05 31.1 7.0 85 21-108 25-111 (221)
79 cd04181 NTP_transferase NTP_tr 91.4 1.2 2.5E-05 30.8 6.6 82 24-108 27-110 (217)
80 PLN03180 reversibly glycosylat 90.5 0.17 3.8E-06 38.9 1.9 29 82-110 82-110 (346)
81 cd06915 NTP_transferase_WcbM_l 88.8 3.1 6.8E-05 28.7 7.1 77 28-107 30-109 (223)
82 KOG1476|consensus 88.8 5.1 0.00011 30.8 8.5 89 17-106 89-194 (330)
83 cd02540 GT2_GlmU_N_bac N-termi 88.2 6.9 0.00015 27.2 9.2 74 27-105 26-101 (229)
84 PF11316 Rhamno_transf: Putati 88.1 1.5 3.1E-05 32.1 5.2 81 25-108 38-129 (234)
85 PLN02893 Cellulose synthase-li 87.9 1.1 2.3E-05 38.0 4.8 41 65-106 262-311 (734)
86 PF12804 NTP_transf_3: MobA-li 87.4 5 0.00011 26.4 7.2 72 28-106 25-98 (160)
87 cd02510 pp-GalNAc-T pp-GalNAc- 86.8 2.8 6.1E-05 30.7 6.1 49 15-63 57-106 (299)
88 PRK14503 mannosyl-3-phosphogly 86.7 10 0.00022 29.8 9.1 88 16-106 52-173 (393)
89 COG1213 Predicted sugar nucleo 85.9 1.2 2.6E-05 32.7 3.7 79 27-108 31-111 (239)
90 TIGR02460 osmo_MPGsynth mannos 85.7 12 0.00026 29.2 9.1 88 16-106 51-172 (381)
91 PLN02458 transferase, transfer 84.7 15 0.00033 28.4 9.2 64 42-107 144-216 (346)
92 cd02503 MobA MobA catalyzes th 84.2 5.9 0.00013 26.7 6.4 70 27-106 26-96 (181)
93 cd02518 GT2_SpsF SpsF is a gly 84.2 11 0.00024 26.6 8.0 77 26-106 23-100 (233)
94 PF03360 Glyco_transf_43: Glyc 83.8 2.4 5.1E-05 30.5 4.4 64 42-106 10-90 (207)
95 TIGR03552 F420_cofC 2-phospho- 83.6 7.3 0.00016 26.7 6.7 56 43-106 46-103 (195)
96 PF09488 Osmo_MPGsynth: Mannos 83.4 20 0.00043 28.2 11.8 87 16-105 51-171 (381)
97 cd02523 PC_cytidylyltransferas 82.9 14 0.0003 25.9 8.3 79 23-107 26-106 (229)
98 TIGR03310 matur_ygfJ molybdenu 81.6 13 0.00029 24.9 7.7 76 27-106 25-102 (188)
99 cd04189 G1P_TT_long G1P_TT_lon 80.7 15 0.00031 25.8 7.5 83 22-108 27-112 (236)
100 cd06425 M1P_guanylylT_B_like_N 80.6 7.1 0.00015 27.5 5.9 80 22-106 27-113 (233)
101 PF03071 GNT-I: GNT-I family; 79.8 7 0.00015 31.2 6.0 90 15-109 93-207 (434)
102 PRK14360 glmU bifunctional N-a 79.6 21 0.00046 27.7 8.7 74 28-105 30-105 (450)
103 cd06428 M1P_guanylylT_A_like_N 78.6 13 0.00027 26.7 6.8 84 21-106 26-115 (257)
104 PLN02195 cellulose synthase A 78.5 3.6 7.7E-05 35.9 4.3 42 66-108 418-468 (977)
105 PF13896 Glyco_transf_49: Glyc 77.7 2.3 4.9E-05 32.3 2.7 30 80-109 114-143 (317)
106 cd04182 GT_2_like_f GT_2_like_ 76.0 20 0.00044 23.8 7.3 75 27-106 26-103 (186)
107 cd04183 GT2_BcE_like GT2_BcbE_ 75.8 24 0.00052 24.6 8.4 85 22-108 25-112 (231)
108 PRK14502 bifunctional mannosyl 74.6 38 0.00083 28.8 9.2 88 16-106 56-177 (694)
109 cd02524 G1P_cytidylyltransfera 69.8 38 0.00082 24.2 7.5 86 20-108 23-132 (253)
110 PRK00317 mobA molybdopterin-gu 68.0 35 0.00077 23.2 7.3 70 27-106 30-101 (193)
111 PLN02189 cellulose synthase 66.5 12 0.00025 33.1 4.7 66 42-108 456-547 (1040)
112 PF00483 NTP_transferase: Nucl 64.5 14 0.00031 25.9 4.2 82 25-107 29-116 (248)
113 PRK14352 glmU bifunctional N-a 63.7 72 0.0016 25.2 8.7 79 23-105 29-110 (482)
114 PRK02726 molybdopterin-guanine 63.2 17 0.00037 25.3 4.4 73 26-106 32-105 (200)
115 TIGR02623 G1P_cyt_trans glucos 61.3 59 0.0013 23.4 7.9 86 21-107 25-131 (254)
116 cd02509 GDP-M1P_Guanylyltransf 61.3 62 0.0014 23.7 7.9 85 21-107 27-116 (274)
117 cd04179 DPM_DPG-synthase_like 60.1 46 0.00099 21.8 6.1 56 6-63 46-102 (185)
118 PRK14353 glmU bifunctional N-a 58.9 39 0.00086 26.2 6.1 75 28-105 34-110 (446)
119 TIGR01173 glmU UDP-N-acetylglu 58.6 83 0.0018 24.3 8.9 73 28-105 29-102 (451)
120 cd02516 CDP-ME_synthetase CDP- 58.0 45 0.00097 22.9 5.8 77 27-106 28-108 (218)
121 PF09258 Glyco_transf_64: Glyc 57.4 28 0.00061 25.4 4.8 85 19-107 3-89 (247)
122 cd06426 NTP_transferase_like_2 57.2 45 0.00098 22.9 5.7 80 24-107 27-108 (220)
123 PF00535 Glycos_transf_2: Glyc 56.4 47 0.001 20.8 5.3 49 15-63 52-104 (169)
124 PRK14355 glmU bifunctional N-a 55.6 99 0.0022 24.2 9.2 78 23-105 28-107 (459)
125 PRK15480 glucose-1-phosphate t 55.2 71 0.0015 23.8 6.7 82 20-104 28-112 (292)
126 cd02538 G1P_TT_short G1P_TT_sh 54.7 63 0.0014 22.7 6.2 79 26-105 30-110 (240)
127 PRK14358 glmU bifunctional N-a 54.0 1.1E+02 0.0023 24.4 7.9 72 28-105 36-110 (481)
128 cd04188 DPG_synthase DPG_synth 52.9 70 0.0015 21.7 6.7 57 6-63 48-105 (211)
129 cd04195 GT2_AmsE_like GT2_AmsE 51.4 70 0.0015 21.3 6.1 34 18-51 57-90 (201)
130 TIGR01207 rmlA glucose-1-phosp 51.0 1E+02 0.0022 22.9 6.9 82 21-105 25-109 (286)
131 PLN02638 cellulose synthase A 50.9 26 0.00057 31.2 4.2 39 69-107 517-564 (1079)
132 PLN02248 cellulose synthase-li 50.2 27 0.00058 31.3 4.1 43 65-108 583-634 (1135)
133 PRK13368 3-deoxy-manno-octulos 49.7 88 0.0019 21.9 8.1 71 27-105 27-100 (238)
134 cd06442 DPM1_like DPM1_like re 49.5 79 0.0017 21.3 6.9 46 18-63 55-101 (224)
135 PLN02917 CMP-KDO synthetase 48.9 94 0.002 23.2 6.5 72 27-106 72-148 (293)
136 TIGR02665 molyb_mobA molybdopt 48.1 46 0.00099 22.3 4.4 72 27-106 27-100 (186)
137 PRK14356 glmU bifunctional N-a 47.4 1.3E+02 0.0029 23.3 8.3 74 27-105 33-109 (456)
138 cd04198 eIF-2B_gamma_N The N-t 47.1 95 0.0021 21.6 7.8 79 23-105 28-112 (214)
139 PRK14354 glmU bifunctional N-a 46.6 1.4E+02 0.003 23.3 8.4 77 22-105 26-104 (458)
140 cd02513 CMP-NeuAc_Synthase CMP 46.5 79 0.0017 21.7 5.6 76 26-106 25-110 (223)
141 PRK05450 3-deoxy-manno-octulos 45.5 1E+02 0.0023 21.6 7.7 74 26-105 26-102 (245)
142 cd04187 DPM1_like_bac Bacteria 45.4 86 0.0019 20.5 6.6 47 17-63 56-103 (181)
143 PRK13385 2-C-methyl-D-erythrit 44.9 1.1E+02 0.0023 21.5 6.5 76 27-106 30-110 (230)
144 PF01501 Glyco_transf_8: Glyco 44.7 64 0.0014 22.2 4.9 27 81-107 85-112 (250)
145 TIGR00453 ispD 2-C-methyl-D-er 42.5 1.1E+02 0.0024 21.0 6.9 75 27-106 27-103 (217)
146 KOG0385|consensus 42.4 71 0.0015 27.9 5.4 59 41-106 510-571 (971)
147 cd06423 CESA_like CESA_like is 41.9 85 0.0018 19.5 5.6 46 16-61 53-99 (180)
148 COG2197 CitB Response regulato 40.6 1.1E+02 0.0024 21.5 5.6 21 78-98 59-79 (211)
149 cd04184 GT2_RfbC_Mx_like Myxoc 40.0 1.1E+02 0.0024 20.2 6.4 47 17-63 59-106 (202)
150 PRK00155 ispD 2-C-methyl-D-ery 39.9 1.3E+02 0.0028 21.0 7.4 76 27-106 31-108 (227)
151 COG0746 MobA Molybdopterin-gua 39.9 72 0.0016 22.4 4.5 70 27-106 29-99 (192)
152 PF05679 CHGN: Chondroitin N-a 38.6 2.1E+02 0.0046 23.1 8.9 89 19-108 251-356 (499)
153 cd04197 eIF-2B_epsilon_N The N 36.8 1.4E+02 0.0031 20.6 6.6 84 20-107 25-117 (217)
154 PRK10018 putative glycosyl tra 36.7 1.7E+02 0.0037 21.6 6.2 46 6-51 50-95 (279)
155 cd02541 UGPase_prokaryotic Pro 36.6 1.6E+02 0.0034 21.0 8.4 85 21-106 26-131 (267)
156 PRK14357 glmU bifunctional N-a 36.0 2.1E+02 0.0045 22.2 8.0 78 20-105 22-100 (448)
157 PRK09451 glmU bifunctional N-a 35.9 2.1E+02 0.0046 22.3 7.8 74 27-105 33-107 (456)
158 PRK14489 putative bifunctional 35.4 2.1E+02 0.0045 22.0 6.8 28 79-106 78-105 (366)
159 COG5258 GTPBP1 GTPase [General 33.1 1.9E+02 0.0041 23.5 6.1 66 2-67 183-257 (527)
160 PF05060 MGAT2: N-acetylglucos 33.1 2.2E+02 0.0048 22.3 6.5 51 16-67 32-83 (356)
161 cd02517 CMP-KDO-Synthetase CMP 32.7 1.7E+02 0.0037 20.4 8.1 71 27-105 26-101 (239)
162 cd08770 DAP_dppA_3 Peptidase M 31.6 1.2E+02 0.0026 22.7 4.6 66 32-104 41-106 (263)
163 PRK13233 nifH nitrogenase redu 31.5 1.2E+02 0.0026 21.8 4.7 36 71-107 6-44 (275)
164 COG1023 Gnd Predicted 6-phosph 31.5 1.7E+02 0.0038 22.1 5.4 75 6-85 50-128 (300)
165 COG1209 RfbA dTDP-glucose pyro 30.9 2.4E+02 0.0052 21.5 7.2 66 33-100 37-106 (286)
166 PF01697 Glyco_transf_92: Glyc 30.8 91 0.002 22.4 3.9 63 42-107 32-117 (285)
167 COG1859 KptA RNA:NAD 2'-phosph 30.3 49 0.0011 24.0 2.3 39 69-109 144-182 (211)
168 cd06439 CESA_like_1 CESA_like_ 30.1 1.5E+02 0.0032 20.5 4.9 46 18-63 86-132 (251)
169 cd06434 GT2_HAS Hyaluronan syn 28.3 2E+02 0.0042 19.6 5.4 40 24-63 60-100 (235)
170 cd02508 ADP_Glucose_PP ADP-glu 27.8 2E+02 0.0043 19.5 5.9 83 21-105 24-122 (200)
171 TIGR03584 PseF pseudaminic aci 27.4 2E+02 0.0043 20.3 5.1 76 27-107 24-108 (222)
172 TIGR01208 rmlA_long glucose-1- 27.4 2.7E+02 0.0058 20.9 9.1 84 22-107 26-111 (353)
173 PRK15384 type III secretion sy 26.7 53 0.0012 24.7 2.0 64 42-106 35-100 (336)
174 PLN02190 cellulose synthase-li 26.7 1.3E+02 0.0029 25.9 4.6 42 65-107 250-300 (756)
175 PLN02436 cellulose synthase A 26.5 1.2E+02 0.0025 27.4 4.3 42 65-107 530-580 (1094)
176 cd04196 GT_2_like_d Subfamily 25.7 2E+02 0.0044 18.9 6.7 37 15-51 53-89 (214)
177 PF09670 Cas_Cas02710: CRISPR- 25.4 3.3E+02 0.0071 21.2 7.6 60 4-63 1-63 (379)
178 PHA02518 ParA-like protein; Pr 25.4 2E+02 0.0044 19.4 4.8 35 72-106 5-41 (211)
179 PF11051 Mannosyl_trans3: Mann 24.6 2.6E+02 0.0057 20.5 5.5 70 34-106 23-103 (271)
180 PRK14490 putative bifunctional 24.3 3.3E+02 0.0072 20.9 7.4 73 25-106 198-271 (369)
181 PF09886 DUF2113: Uncharacteri 24.0 1.3E+02 0.0029 21.4 3.6 50 46-110 124-174 (188)
182 PHA01631 hypothetical protein 23.2 53 0.0012 23.0 1.4 61 42-108 17-86 (176)
183 PRK07649 para-aminobenzoate/an 23.1 2.1E+02 0.0046 19.9 4.6 30 45-76 2-32 (195)
184 PLN02726 dolichyl-phosphate be 22.8 2.7E+02 0.0059 19.4 6.9 47 17-63 69-116 (243)
185 PLN02915 cellulose synthase A 22.8 1.7E+02 0.0036 26.4 4.5 42 65-107 452-502 (1044)
186 PF04951 Peptidase_M55: D-amin 22.3 1E+02 0.0022 23.0 2.9 64 32-103 41-104 (265)
187 COG3696 Putative silver efflux 22.2 35 0.00076 30.1 0.4 36 4-40 304-339 (1027)
188 COG1208 GCD1 Nucleoside-diphos 22.1 3.7E+02 0.008 20.6 7.4 78 28-107 33-112 (358)
189 cd02507 eIF-2B_gamma_N_like Th 22.0 2.8E+02 0.0061 19.2 5.7 83 22-106 27-115 (216)
190 PF05673 DUF815: Protein of un 21.9 3.4E+02 0.0074 20.2 5.8 62 17-78 80-150 (249)
191 TIGR03018 pepcterm_TyrKin exop 21.8 2.6E+02 0.0055 19.3 4.8 30 76-105 44-76 (207)
192 TIGR00454 conserved hypothetic 21.8 2.7E+02 0.006 19.0 6.3 72 27-106 27-101 (183)
193 cd08769 DAP_dppA_2 Peptidase M 21.6 1.7E+02 0.0038 21.9 4.0 65 32-104 41-105 (270)
194 PLN02400 cellulose synthase 21.6 1.8E+02 0.0039 26.3 4.5 41 66-107 522-571 (1085)
195 cd00899 b4GalT Beta-4-Galactos 21.4 99 0.0021 22.4 2.6 28 82-109 51-82 (219)
196 TIGR01479 GMP_PMI mannose-1-ph 21.2 4.3E+02 0.0094 21.1 7.3 78 27-106 33-116 (468)
197 PF03314 DUF273: Protein of un 21.2 63 0.0014 23.6 1.5 15 92-106 40-54 (222)
198 COG1210 GalU UDP-glucose pyrop 21.1 1.9E+02 0.0041 22.1 4.0 39 69-107 98-136 (291)
199 KOG3765|consensus 20.9 92 0.002 24.6 2.5 29 81-109 179-207 (386)
200 cd02537 GT8_Glycogenin Glycoge 20.9 3.2E+02 0.0069 19.4 6.1 25 84-108 80-104 (240)
201 TIGR01556 rhamnosyltran L-rham 20.6 2.8E+02 0.0062 19.7 4.9 46 17-62 46-95 (281)
202 PRK06774 para-aminobenzoate sy 20.3 2.6E+02 0.0056 19.1 4.5 7 69-75 25-31 (191)
203 cd06062 H2MP_MemB-H2up Endopep 20.2 2.5E+02 0.0055 18.4 4.3 10 93-102 52-61 (146)
204 PRK06683 hypothetical protein; 20.2 1.5E+02 0.0032 17.9 2.9 49 33-84 19-68 (82)
No 1
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.81 E-value=3.2e-19 Score=134.49 Aligned_cols=93 Identities=20% Similarity=0.219 Sum_probs=82.6
Q ss_pred CCeEEEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHH
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAE 90 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~ 90 (110)
|...+|++.++.+.++.+++.|+..|+ +.|||+|||| |++.++++.+.. +++ ++++++. +|.|.+.|||.|++
T Consensus 6 p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~-~~~-~i~vi~~-~n~G~~~arN~gl~ 82 (328)
T PRK10073 6 PKLSIIIPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAE-NYP-HVRLLHQ-ANAGVSVARNTGLA 82 (328)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHh-hCC-CEEEEEC-CCCChHHHHHHHHH
Confidence 545678899999999999999998886 6899999999 778889998877 776 7999875 58999999999999
Q ss_pred hcCCCEEEEEcCCCCcCCCC
Q psy5323 91 NAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 91 ~a~g~~i~flD~d~~~~~~W 110 (110)
.|+|+||+|+|+|+...+++
T Consensus 83 ~a~g~yi~flD~DD~~~p~~ 102 (328)
T PRK10073 83 VATGKYVAFPDADDVVYPTM 102 (328)
T ss_pred hCCCCEEEEECCCCccChhH
Confidence 99999999999999988764
No 2
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.79 E-value=1.1e-18 Score=128.99 Aligned_cols=92 Identities=38% Similarity=0.597 Sum_probs=76.3
Q ss_pred EEEecCCch-HHHHHHHhccccccC----CEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHh
Q psy5323 19 RLIRLKERA-GLIRARIAGAENAKG----DVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAEN 91 (110)
Q Consensus 19 ~ii~~~~~~-~~i~~~l~~~~~~~~----~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~ 91 (110)
+||++++.. ..+.+++.|+..++. .|||||||+ |.+...+.........+++++++++.|.|.+.|+|.|++.
T Consensus 2 IIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~ 81 (299)
T cd02510 2 VIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARA 81 (299)
T ss_pred EEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 567777777 999999999887652 599999999 6677776553221232379999999999999999999999
Q ss_pred cCCCEEEEEcCCCCcCCCC
Q psy5323 92 AKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 92 a~g~~i~flD~d~~~~~~W 110 (110)
|+|+||+|||+|+++.++|
T Consensus 82 A~gd~i~fLD~D~~~~~~w 100 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGW 100 (299)
T ss_pred ccCCEEEEEeCCcccCccH
Confidence 9999999999999999998
No 3
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.76 E-value=8.3e-18 Score=124.61 Aligned_cols=97 Identities=16% Similarity=0.140 Sum_probs=80.2
Q ss_pred CCCeEEEEecCCchHHHHHHHhcccccc--CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHh
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAEN 91 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~ 91 (110)
.|...++++.++++.++.+++.|+..|+ .+|||||||++.+.+.+..+..+....++++++++.|.|.+.|||.|++.
T Consensus 4 ~p~VSVIip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi~~ 83 (279)
T PRK10018 4 NPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIML 83 (279)
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3545577889999999999999998886 57999999993345566666652122379999999999999999999999
Q ss_pred cCCCEEEEEcCCCCcCCCC
Q psy5323 92 AKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 92 a~g~~i~flD~d~~~~~~W 110 (110)
|+|+||+|+|+|+...|++
T Consensus 84 a~g~~I~~lDaDD~~~p~~ 102 (279)
T PRK10018 84 AQGEYITGIDDDDEWTPNR 102 (279)
T ss_pred cCCCEEEEECCCCCCCccH
Confidence 9999999999999988864
No 4
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.75 E-value=4.9e-18 Score=119.11 Aligned_cols=90 Identities=22% Similarity=0.281 Sum_probs=79.7
Q ss_pred EEEecCCchHHHHHHHhcccccc---CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC
Q psy5323 19 RLIRLKERAGLIRARIAGAENAK---GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK 93 (110)
Q Consensus 19 ~ii~~~~~~~~i~~~l~~~~~~~---~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~ 93 (110)
++++.++++..+..++.++..|+ ..|||+|||+ |++.+.+.++.+ +.+ .+++++++.|.|.+.|+|.|++.|+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~-~~~-~i~~~~~~~n~G~~~a~n~g~~~a~ 78 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAK-EYP-RVRLIVRPGKRGLGSAYIEGFKAAR 78 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHH-hCC-ceEEEecCCCCChHHHHHHHHHHcC
Confidence 36788888888999999988764 5899999999 778888888877 666 6899999999999999999999999
Q ss_pred CCEEEEEcCCCCcCCCC
Q psy5323 94 GDVLMFLDSHCELGTNW 110 (110)
Q Consensus 94 g~~i~flD~d~~~~~~W 110 (110)
|+|++|+|+|+.+.++|
T Consensus 79 gd~i~~lD~D~~~~~~~ 95 (224)
T cd06442 79 GDVIVVMDADLSHPPEY 95 (224)
T ss_pred CCEEEEEECCCCCCHHH
Confidence 99999999999998876
No 5
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.74 E-value=5.7e-18 Score=112.12 Aligned_cols=90 Identities=24% Similarity=0.399 Sum_probs=76.8
Q ss_pred EEEecCCchHHHHHHHhccccc--cCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCC
Q psy5323 19 RLIRLKERAGLIRARIAGAENA--KGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKG 94 (110)
Q Consensus 19 ~ii~~~~~~~~i~~~l~~~~~~--~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g 94 (110)
++++++++...+.+++.++..| ...|||||||+ +.+...++++.+ ..+ ++++++++.|.|.+.++|.|++.|+|
T Consensus 2 vvip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~-~i~~i~~~~n~g~~~~~n~~~~~a~~ 79 (169)
T PF00535_consen 2 VVIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDP-NIRYIRNPENLGFSAARNRGIKHAKG 79 (169)
T ss_dssp EEEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CST-TEEEEEHCCCSHHHHHHHHHHHH--S
T ss_pred EEEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-ccc-ccccccccccccccccccccccccce
Confidence 5788888899999999999877 36899999999 778888888875 444 79999999999999999999999999
Q ss_pred CEEEEEcCCCCcCCCC
Q psy5323 95 DVLMFLDSHCELGTNW 110 (110)
Q Consensus 95 ~~i~flD~d~~~~~~W 110 (110)
+|++|+|+|+.+.++|
T Consensus 80 ~~i~~ld~D~~~~~~~ 95 (169)
T PF00535_consen 80 EYILFLDDDDIISPDW 95 (169)
T ss_dssp SEEEEEETTEEE-TTH
T ss_pred eEEEEeCCCceEcHHH
Confidence 9999999999999876
No 6
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.73 E-value=2.1e-17 Score=114.39 Aligned_cols=89 Identities=16% Similarity=0.253 Sum_probs=74.4
Q ss_pred EEEecCCc--hHHHHHHHhcccccc--CCEEEEEeCC---CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHh
Q psy5323 19 RLIRLKER--AGLIRARIAGAENAK--GDVLMFLDSH---YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAEN 91 (110)
Q Consensus 19 ~ii~~~~~--~~~i~~~l~~~~~~~--~~EiivVDD~---d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~ 91 (110)
++++.+++ ..++.+++.|+..|+ ..|||||||+ +.+..+++.+.. +++ +++++++.|.|.+.|+|.|++.
T Consensus 2 viip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~-~~~--i~~i~~~~n~G~~~a~N~g~~~ 78 (201)
T cd04195 2 VLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKR-KLP--LKVVPLEKNRGLGKALNEGLKH 78 (201)
T ss_pred EEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHh-cCC--eEEEEcCccccHHHHHHHHHHh
Confidence 34554443 468999999998887 5899999999 346677777766 554 9999999999999999999999
Q ss_pred cCCCEEEEEcCCCCcCCCC
Q psy5323 92 AKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 92 a~g~~i~flD~d~~~~~~W 110 (110)
|+|+||+|+|+|+...++|
T Consensus 79 a~gd~i~~lD~Dd~~~~~~ 97 (201)
T cd04195 79 CTYDWVARMDTDDISLPDR 97 (201)
T ss_pred cCCCEEEEeCCccccCcHH
Confidence 9999999999999998875
No 7
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.72 E-value=5.4e-17 Score=112.60 Aligned_cols=91 Identities=20% Similarity=0.191 Sum_probs=80.7
Q ss_pred EEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCC
Q psy5323 19 RLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKG 94 (110)
Q Consensus 19 ~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g 94 (110)
++++.+++..++.+++.|+..|+ .+|||||||+ |.|.+.++.+.. +.|..+++++++.|.|.+.++|.|+..++|
T Consensus 2 IvIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~-~~~~~~~~~~~~~~~G~~~~~n~g~~~~~g 80 (214)
T cd04196 2 VLMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYID-KDPFIIILIRNGKNLGVARNFESLLQAADG 80 (214)
T ss_pred EEEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHh-cCCceEEEEeCCCCccHHHHHHHHHHhCCC
Confidence 57888888899999999998776 5899999999 778888888877 665458888999999999999999999999
Q ss_pred CEEEEEcCCCCcCCCC
Q psy5323 95 DVLMFLDSHCELGTNW 110 (110)
Q Consensus 95 ~~i~flD~d~~~~~~W 110 (110)
+|++|+|+|+...++|
T Consensus 81 ~~v~~ld~Dd~~~~~~ 96 (214)
T cd04196 81 DYVFFCDQDDIWLPDK 96 (214)
T ss_pred CEEEEECCCcccChhH
Confidence 9999999999998875
No 8
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.72 E-value=4.9e-17 Score=114.63 Aligned_cols=91 Identities=12% Similarity=0.131 Sum_probs=76.4
Q ss_pred EEEecCCchHHHHHHHhcccccc---CCEEEEEeCC--CCchHHHHHHHhccCC-CcEEEEE----ccCCcchHHHHHHH
Q psy5323 19 RLIRLKERAGLIRARIAGAENAK---GDVLMFLDSH--YELQGKLDYYIQTRLP-PKVRLIR----LKERAGLIRARIAG 88 (110)
Q Consensus 19 ~ii~~~~~~~~i~~~l~~~~~~~---~~EiivVDD~--d~t~~~l~~~~~~~~~-~~~~~i~----~~~~~G~~~arn~G 88 (110)
++++.++++..+.+++.|+..|+ ..|||||||+ |+|.++++++.. +.+ .+++++. ++.+.|.+.|||.|
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~G~~~a~N~g 79 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRK-KLEDSGVIVLVGSHNSPSPKGVGYAKNQA 79 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHH-hCcccCeEEEEecccCCCCccHHHHHHHH
Confidence 36788888999999999998775 3799999999 778888888776 543 2577665 34568999999999
Q ss_pred HHhcCCCEEEEEcCCCCcCCCC
Q psy5323 89 AENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 89 ~~~a~g~~i~flD~d~~~~~~W 110 (110)
++.|+|+|++|+|+|+...++|
T Consensus 80 ~~~a~gd~i~~lD~D~~~~~~~ 101 (219)
T cd06913 80 IAQSSGRYLCFLDSDDVMMPQR 101 (219)
T ss_pred HHhcCCCEEEEECCCccCChhH
Confidence 9999999999999999988875
No 9
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.70 E-value=1.1e-16 Score=114.78 Aligned_cols=95 Identities=14% Similarity=0.017 Sum_probs=77.3
Q ss_pred CCeEEEEecCCchHHHHHHHhccccccC----CEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHH
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAENAKG----DVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAG 88 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~~~~~----~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G 88 (110)
|...++++.++.+..+.+++.|+..++. .|||+|||+ |++.++++.+.. ....+++++.+..+.|.+.|+|.|
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~-~~~~~i~~~~~~~~~G~~~a~n~g 79 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRL-PSIFRVVVVPPSQPRTKPKACNYA 79 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhcc-CCCeeEEEecCCCCCchHHHHHHH
Confidence 4466888988888999999999987652 699999999 678888877633 111246666666778999999999
Q ss_pred HHhcCCCEEEEEcCCCCcCCCC
Q psy5323 89 AENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 89 ~~~a~g~~i~flD~d~~~~~~W 110 (110)
++.|+|+||+|+|+|+.+.++|
T Consensus 80 ~~~a~gd~i~~~DaD~~~~~~~ 101 (241)
T cd06427 80 LAFARGEYVVIYDAEDAPDPDQ 101 (241)
T ss_pred HHhcCCCEEEEEcCCCCCChHH
Confidence 9999999999999999999876
No 10
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.70 E-value=1.6e-16 Score=109.79 Aligned_cols=94 Identities=19% Similarity=0.237 Sum_probs=78.0
Q ss_pred CCeEEEEecCCch-HHHHHHHhcccccc--CCEEEEEeCC--CCch-HHHHHHHhccCCCcEEEEEccCCcchHHHHHHH
Q psy5323 15 PPKVRLIRLKERA-GLIRARIAGAENAK--GDVLMFLDSH--YELQ-GKLDYYIQTRLPPKVRLIRLKERAGLIRARIAG 88 (110)
Q Consensus 15 p~~v~ii~~~~~~-~~i~~~l~~~~~~~--~~EiivVDD~--d~t~-~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G 88 (110)
|...+|++.++++ ..+.+++.|+..|+ ..|||||||+ |.+. ..++.+.. ..+ ++++++++.+.|.+.|+|.|
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~-~~~-~~~~~~~~~~~g~~~a~n~g 78 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAA-QDP-RIKVVFREENGGISAATNSA 78 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHh-cCC-CEEEEEcccCCCHHHHHHHH
Confidence 3456778888887 88999999998775 4699999999 4344 45555555 555 79999999999999999999
Q ss_pred HHhcCCCEEEEEcCCCCcCCCC
Q psy5323 89 AENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 89 ~~~a~g~~i~flD~d~~~~~~W 110 (110)
++.|+|+|++|+|+|+.++++|
T Consensus 79 ~~~a~~d~i~~ld~D~~~~~~~ 100 (202)
T cd04184 79 LELATGEFVALLDHDDELAPHA 100 (202)
T ss_pred HHhhcCCEEEEECCCCcCChHH
Confidence 9999999999999999999876
No 11
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.69 E-value=1.1e-16 Score=112.29 Aligned_cols=91 Identities=16% Similarity=0.152 Sum_probs=78.3
Q ss_pred EEEecCCchHHHHHHHhccccc------cCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHH
Q psy5323 19 RLIRLKERAGLIRARIAGAENA------KGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAE 90 (110)
Q Consensus 19 ~ii~~~~~~~~i~~~l~~~~~~------~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~ 90 (110)
+|++.++.+..+.+++.++..+ ..+|||+|||+ |++...+..+.+ +++..+++++++.|.|.++|+|.|++
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~-~~~~~i~~i~~~~n~G~~~a~~~g~~ 79 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLAR-KNPALIRVLTLPKNRGKGGAVRAGML 79 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHH-hCCCcEEEEEcccCCCcHHHHHHHHH
Confidence 3677788888899989888755 36899999999 778888888877 66634699999999999999999999
Q ss_pred hcCCCEEEEEcCCCCcCCCC
Q psy5323 91 NAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 91 ~a~g~~i~flD~d~~~~~~W 110 (110)
.|+|+||+|+|+|+...++|
T Consensus 80 ~a~gd~i~~ld~D~~~~~~~ 99 (211)
T cd04188 80 AARGDYILFADADLATPFEE 99 (211)
T ss_pred HhcCCEEEEEeCCCCCCHHH
Confidence 99999999999999988764
No 12
>KOG3737|consensus
Probab=99.69 E-value=6.4e-17 Score=124.11 Aligned_cols=100 Identities=34% Similarity=0.594 Sum_probs=82.0
Q ss_pred HHhhhCCC-eEEEEecCCchHHHHHHHhcccccc----CCEEEEEeCC---CCchHHHHHHHhccCCCcEEEEEccCCcc
Q psy5323 9 YIQTRLPP-KVRLIRLKERAGLIRARIAGAENAK----GDVLMFLDSH---YELQGKLDYYIQTRLPPKVRLIRLKERAG 80 (110)
Q Consensus 9 ~~~~~lp~-~v~ii~~~~~~~~i~~~l~~~~~~~----~~EiivVDD~---d~t~~~l~~~~~~~~~~~~~~i~~~~~~G 80 (110)
|.. +||. .|+|+..++....+-+++.|+...+ ..||++|||. +...+.|++|+. .++..++++|++++.|
T Consensus 150 Ype-~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~-~fnGlVkV~Rne~REG 227 (603)
T KOG3737|consen 150 YPE-NLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVK-LFNGLVKVFRNERREG 227 (603)
T ss_pred Ccc-cCCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHH-HhcCEEEEEecchhhh
Confidence 444 5777 4566665555555555577765444 4799999999 457889999998 8877899999999999
Q ss_pred hHHHHHHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 81 LIRARIAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 81 ~~~arn~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
+..||-.|+..|+|++++|||||||+..+|
T Consensus 228 LI~aRSiGA~~atGeV~ifLDAHCEVntNW 257 (603)
T KOG3737|consen 228 LIQARSIGAQKATGEVLIFLDAHCEVNTNW 257 (603)
T ss_pred hhhhhccchhhccccEEEEEecceeeeccc
Confidence 999999999999999999999999999999
No 13
>KOG3736|consensus
Probab=99.69 E-value=2.9e-17 Score=131.09 Aligned_cols=96 Identities=40% Similarity=0.684 Sum_probs=81.1
Q ss_pred hCCCe-EEEEecCCchHHHHHHHhcccccc----CCEEEEEeCC---CCchHHHHHHHhccCCCcEEEEEccCCcchHHH
Q psy5323 13 RLPPK-VRLIRLKERAGLIRARIAGAENAK----GDVLMFLDSH---YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRA 84 (110)
Q Consensus 13 ~lp~~-v~ii~~~~~~~~i~~~l~~~~~~~----~~EiivVDD~---d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~a 84 (110)
+||.. |+++..++...++.+.+.|+...+ ..|||+|||+ +.....++.+++ ++. .++++|++++.|+..|
T Consensus 140 ~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k-~~~-~v~i~r~~~R~GLIrA 217 (578)
T KOG3736|consen 140 KLPTTSVIIIFHNEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVK-RFS-KVRILRTKKREGLIRA 217 (578)
T ss_pred ccCCCceEEEEecCCCcchhheEEeehccCChhHeEEEEEeecCcchhhhhhhhHHHHh-hhc-ceeEEeecchhhhHHH
Confidence 47775 455556777777777788887666 3799999999 344566999998 766 5999999999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 85 RIAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 85 rn~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
|+.|++.|+||+++|||||||++.||
T Consensus 218 Rl~GA~~A~geVL~FLDsHcE~n~gW 243 (578)
T KOG3736|consen 218 RLLGASMATGEVLTFLDSHCEVNVGW 243 (578)
T ss_pred HhhhhhhhhchheeeeecceeEecCc
Confidence 99999999999999999999999999
No 14
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.69 E-value=1.2e-16 Score=108.89 Aligned_cols=89 Identities=20% Similarity=0.205 Sum_probs=79.0
Q ss_pred EEecCCchHHHHHHHhcccccc----CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC
Q psy5323 20 LIRLKERAGLIRARIAGAENAK----GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK 93 (110)
Q Consensus 20 ii~~~~~~~~i~~~l~~~~~~~----~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~ 93 (110)
+++.++.+..+.+++.++..++ .+|||+|||+ +.+.+.+.++.. +.+ .++++++++|.|.+.|+|.|++.|+
T Consensus 2 ii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~-~~~-~~~~~~~~~n~G~~~a~n~g~~~a~ 79 (185)
T cd04179 2 VIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAA-RVP-RVRVIRLSRNFGKGAAVRAGFKAAR 79 (185)
T ss_pred eecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHH-hCC-CeEEEEccCCCCccHHHHHHHHHhc
Confidence 5677777888889999988774 6999999999 778888888877 666 6899999999999999999999999
Q ss_pred CCEEEEEcCCCCcCCCC
Q psy5323 94 GDVLMFLDSHCELGTNW 110 (110)
Q Consensus 94 g~~i~flD~d~~~~~~W 110 (110)
|||++|+|+|+.+.++|
T Consensus 80 gd~i~~lD~D~~~~~~~ 96 (185)
T cd04179 80 GDIVVTMDADLQHPPED 96 (185)
T ss_pred CCEEEEEeCCCCCCHHH
Confidence 99999999999998876
No 15
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.69 E-value=2.2e-16 Score=104.35 Aligned_cols=91 Identities=21% Similarity=0.219 Sum_probs=78.5
Q ss_pred EEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCC
Q psy5323 19 RLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKG 94 (110)
Q Consensus 19 ~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g 94 (110)
++++.++++..+.+++.++..|+ ..||+||||+ +.+...+..+.. ..+..+.+++++++.|.+.|+|.|++.++|
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~n~~~~~~~~ 79 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAA-LYIRRVLVVRDKENGGKAGALNAGLRHAKG 79 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhc-cccceEEEEEecccCCchHHHHHHHHhcCC
Confidence 36778888899999999998886 7899999999 667778877766 443357788899999999999999999999
Q ss_pred CEEEEEcCCCCcCCCC
Q psy5323 95 DVLMFLDSHCELGTNW 110 (110)
Q Consensus 95 ~~i~flD~d~~~~~~W 110 (110)
+|++|+|+|+.+.++|
T Consensus 80 ~~i~~~D~D~~~~~~~ 95 (180)
T cd06423 80 DIVVVLDADTILEPDA 95 (180)
T ss_pred CEEEEECCCCCcChHH
Confidence 9999999999998875
No 16
>KOG3738|consensus
Probab=99.68 E-value=6.7e-17 Score=124.02 Aligned_cols=95 Identities=37% Similarity=0.688 Sum_probs=72.6
Q ss_pred hhCCCeEEEEecC--CchHHHHHHHhcccccc----CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHH
Q psy5323 12 TRLPPKVRLIRLK--ERAGLIRARIAGAENAK----GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRAR 85 (110)
Q Consensus 12 ~~lp~~v~ii~~~--~~~~~i~~~l~~~~~~~----~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~ar 85 (110)
..||+..+||+++ .|+.++|. +-|+.+++ ..|||+|||++...+... .+. +.+ ++|++|+.++.|+..+|
T Consensus 121 ~dlp~TsviITfHNEARS~LLRT-v~SvlnrsP~~li~EiILVDD~S~Dped~~-~L~-ri~-kvr~LRN~~ReGLirSR 196 (559)
T KOG3738|consen 121 VDLPPTSVIITFHNEARSTLLRT-VVSVLNRSPEHLIHEIILVDDFSQDPEDGK-LLK-RIP-KVRVLRNNEREGLIRSR 196 (559)
T ss_pred cCCCCceEEEEeccHHHHHHHHH-HHHHHcCChHHhhheeEEecCCCCChHHHH-HHh-hhh-eeeeecccchhhhhhhh
Confidence 3578776666543 44555555 44555444 379999999922223332 334 677 89999999999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 86 IAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 86 n~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
+.|+..|+|.+++|||||||+.++|
T Consensus 197 vrGAdvA~a~vltFLDSHcEvN~~W 221 (559)
T KOG3738|consen 197 VRGADVAQATVLTFLDSHCEVNEGW 221 (559)
T ss_pred ccccccccceEEEEEecceeecchh
Confidence 9999999999999999999999999
No 17
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.68 E-value=2.9e-16 Score=114.31 Aligned_cols=89 Identities=15% Similarity=0.079 Sum_probs=73.0
Q ss_pred eEEEEecCCchHHHHHHHhcccc---c--cCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHH
Q psy5323 17 KVRLIRLKERAGLIRARIAGAEN---A--KGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGA 89 (110)
Q Consensus 17 ~v~ii~~~~~~~~i~~~l~~~~~---~--~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~ 89 (110)
..+|++.++.+..+.+++.++.. + ...|||||||+ |+|.++++.+.. .. +++++..+ +.|.+.|+|.|+
T Consensus 3 vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~-~~--~i~~i~~~-~~G~~~A~N~Gi 78 (248)
T PRK10063 3 LSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNG-IF--NLRFVSEP-DNGIYDAMNKGI 78 (248)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcc-cC--CEEEEECC-CCCHHHHHHHHH
Confidence 45667788888889999999863 2 25799999999 778888887654 32 48888765 569999999999
Q ss_pred HhcCCCEEEEEcCCCCcCCC
Q psy5323 90 ENAKGDVLMFLDSHCELGTN 109 (110)
Q Consensus 90 ~~a~g~~i~flD~d~~~~~~ 109 (110)
+.|+|+||+|+|+|+...++
T Consensus 79 ~~a~g~~v~~ld~DD~~~~~ 98 (248)
T PRK10063 79 AMAQGRFALFLNSGDIFHQD 98 (248)
T ss_pred HHcCCCEEEEEeCCcccCcC
Confidence 99999999999999988775
No 18
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.68 E-value=4.9e-16 Score=110.35 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=77.9
Q ss_pred CCeEEEEecCCchHHHHHHHhccccccC----CEEEEEeCC-CCchHHHHHHHhccC---CCcEEEEEccCCcc-hHHHH
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAENAKG----DVLMFLDSH-YELQGKLDYYIQTRL---PPKVRLIRLKERAG-LIRAR 85 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~~~~~----~EiivVDD~-d~t~~~l~~~~~~~~---~~~~~~i~~~~~~G-~~~ar 85 (110)
|...+||+.++.+..+.++|.++..|+. .|||||||. |+|...+.++.. ++ ..+++++...++.| .+.|+
T Consensus 1 p~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~-~~~~~~~~i~~~~~~~~~G~k~~a~ 79 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVE-EYAAQGVNIKHVRRADRTGYKAGAL 79 (232)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHH-HHhhcCCceEEEECCCCCCCchHHH
Confidence 3456788888889999999999887653 589999998 888888887654 21 12577777777677 58899
Q ss_pred HHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 86 IAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 86 n~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
|.|++.|+|+||+|+|+|+.+.++|
T Consensus 80 n~g~~~a~~~~i~~~DaD~~~~~~~ 104 (232)
T cd06437 80 AEGMKVAKGEYVAIFDADFVPPPDF 104 (232)
T ss_pred HHHHHhCCCCEEEEEcCCCCCChHH
Confidence 9999999999999999999999887
No 19
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.67 E-value=5.8e-16 Score=105.83 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=73.6
Q ss_pred EEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCC
Q psy5323 19 RLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKG 94 (110)
Q Consensus 19 ~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g 94 (110)
++++.++++..+.+++.++..|+ .+|||||||+ |.+.+.++.+.. .+.++.+.++.|.+.|+|.|++.|+|
T Consensus 2 ivi~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~-----~~~~~~~~~~~g~~~a~n~~~~~a~~ 76 (202)
T cd06433 2 IITPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED-----KITYWISEPDKGIYDAMNKGIALATG 76 (202)
T ss_pred EEEeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh-----hcEEEEecCCcCHHHHHHHHHHHcCC
Confidence 56778888899999999998776 4799999999 678777776644 24455667889999999999999999
Q ss_pred CEEEEEcCCCCcCCCC
Q psy5323 95 DVLMFLDSHCELGTNW 110 (110)
Q Consensus 95 ~~i~flD~d~~~~~~W 110 (110)
+|++|+|+|+.+.++|
T Consensus 77 ~~v~~ld~D~~~~~~~ 92 (202)
T cd06433 77 DIIGFLNSDDTLLPGA 92 (202)
T ss_pred CEEEEeCCCcccCchH
Confidence 9999999999998875
No 20
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.66 E-value=1e-15 Score=117.76 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=83.0
Q ss_pred CCCeEEEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHH
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGA 89 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~ 89 (110)
.|...++++.++.+..+.+++.++..|+ ..||++|||+ |++.+.++++.. +++ +++++++++|.|.+.|+|.|+
T Consensus 53 ~p~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~-~~~-~v~~i~~~~n~Gka~aln~g~ 130 (420)
T PRK11204 53 YPGVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAA-QIP-RLRVIHLAENQGKANALNTGA 130 (420)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHH-hCC-cEEEEEcCCCCCHHHHHHHHH
Confidence 3556678888888899999999987765 5799999999 778888888777 666 799999899999999999999
Q ss_pred HhcCCCEEEEEcCCCCcCCCC
Q psy5323 90 ENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 90 ~~a~g~~i~flD~d~~~~~~W 110 (110)
+.++|||++|+|+|+...++|
T Consensus 131 ~~a~~d~i~~lDaD~~~~~d~ 151 (420)
T PRK11204 131 AAARSEYLVCIDGDALLDPDA 151 (420)
T ss_pred HHcCCCEEEEECCCCCCChhH
Confidence 999999999999999998875
No 21
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.66 E-value=8e-16 Score=110.56 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=78.4
Q ss_pred CCCeEEEEecCCchHHHHHHHhccccc----cCCEEEEEeCC--CCchHHHHHHHhccCC-CcEEEEEccCCcchHHHHH
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAENA----KGDVLMFLDSH--YELQGKLDYYIQTRLP-PKVRLIRLKERAGLIRARI 86 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~~~----~~~EiivVDD~--d~t~~~l~~~~~~~~~-~~~~~i~~~~~~G~~~arn 86 (110)
.|...++++.++.+..+..++..+..+ ...|||||||+ |+|.+++..+.. .++ ..++++.+++|.|.+.|+|
T Consensus 8 ~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~-~~~~~~v~~~~~~~n~G~~~a~n 86 (243)
T PLN02726 8 AMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQK-VYGEDRILLRPRPGKLGLGTAYI 86 (243)
T ss_pred CceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHH-hcCCCcEEEEecCCCCCHHHHHH
Confidence 355668888888888887776665422 25799999999 778888888765 443 2688888899999999999
Q ss_pred HHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 87 AGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 87 ~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
.|++.|+|+|++|+|+|+...++|
T Consensus 87 ~g~~~a~g~~i~~lD~D~~~~~~~ 110 (243)
T PLN02726 87 HGLKHASGDFVVIMDADLSHHPKY 110 (243)
T ss_pred HHHHHcCCCEEEEEcCCCCCCHHH
Confidence 999999999999999999988765
No 22
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.65 E-value=1.1e-15 Score=109.18 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=80.0
Q ss_pred CCCeEEEEecCCchHHHHHHHhcccccc--C--CEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHH
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAENAK--G--DVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIA 87 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~~~~--~--~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~ 87 (110)
+|...++++.++++..+.+++.++..|+ . .|||+|||+ |.+..++..+.. + +++++.++.|.|.+.|+|.
T Consensus 28 ~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~-~---~v~~i~~~~~~g~~~a~n~ 103 (251)
T cd06439 28 LPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYAD-K---GVKLLRFPERRGKAAALNR 103 (251)
T ss_pred CCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhh-C---cEEEEEcCCCCChHHHHHH
Confidence 4556688889999999999999987665 2 699999999 668888877655 3 4899999999999999999
Q ss_pred HHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 88 GAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 88 G~~~a~g~~i~flD~d~~~~~~W 110 (110)
|++.++|||++|+|+|+.+.++|
T Consensus 104 gi~~a~~d~i~~lD~D~~~~~~~ 126 (251)
T cd06439 104 ALALATGEIVVFTDANALLDPDA 126 (251)
T ss_pred HHHHcCCCEEEEEccccCcCHHH
Confidence 99999999999999999998876
No 23
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.65 E-value=5.3e-16 Score=106.17 Aligned_cols=89 Identities=19% Similarity=0.271 Sum_probs=74.8
Q ss_pred EEecCCchHHHHHHHhccccc-----cCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhc
Q psy5323 20 LIRLKERAGLIRARIAGAENA-----KGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENA 92 (110)
Q Consensus 20 ii~~~~~~~~i~~~l~~~~~~-----~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a 92 (110)
+++.++++..+..++.++..+ ...||++|||+ |++.+.+..+.. +.+ +++++++.+|.|.++|+|.|++.|
T Consensus 2 iIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~-~~~-~i~~i~~~~n~G~~~a~n~g~~~a 79 (181)
T cd04187 2 VVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAA-RDP-RVKVIRLSRNFGQQAALLAGLDHA 79 (181)
T ss_pred EEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHh-hCC-CEEEEEecCCCCcHHHHHHHHHhc
Confidence 567777777777776665432 25799999999 778888888776 666 799999999999999999999999
Q ss_pred CCCEEEEEcCCCCcCCCC
Q psy5323 93 KGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 93 ~g~~i~flD~d~~~~~~W 110 (110)
+|+|++|+|+|+...++|
T Consensus 80 ~~d~i~~~D~D~~~~~~~ 97 (181)
T cd04187 80 RGDAVITMDADLQDPPEL 97 (181)
T ss_pred CCCEEEEEeCCCCCCHHH
Confidence 999999999999988776
No 24
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.65 E-value=6.4e-16 Score=109.33 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=72.0
Q ss_pred EEecCCch-HHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCC---
Q psy5323 20 LIRLKERA-GLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKG--- 94 (110)
Q Consensus 20 ii~~~~~~-~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g--- 94 (110)
+|++++++ ..+.+++.|+..| ..|||||||+ +++......+ ..+ ++++++.+.|.|.+.|+|.|++.|+|
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~~~---~~~-~i~~i~~~~n~G~~~a~N~g~~~a~~~~~ 76 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRLRL---NSE-KIELIHLGENLGIAKALNIGIKAALENGA 76 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHhhc---cCC-cEEEEECCCceehHHhhhHHHHHHHhCCC
Confidence 45566666 9999999999887 7899999999 6655544433 123 69999999999999999999999998
Q ss_pred CEEEEEcCCCCcCCCC
Q psy5323 95 DVLMFLDSHCELGTNW 110 (110)
Q Consensus 95 ~~i~flD~d~~~~~~W 110 (110)
+|++|+|+|+...++|
T Consensus 77 d~v~~lD~D~~~~~~~ 92 (237)
T cd02526 77 DYVLLFDQDSVPPPDM 92 (237)
T ss_pred CEEEEECCCCCcCHhH
Confidence 9999999999999886
No 25
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.64 E-value=2.3e-15 Score=99.28 Aligned_cols=93 Identities=20% Similarity=0.184 Sum_probs=81.0
Q ss_pred CCCeEEEEecCCchHHHHHHHhccccccC--CEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHH
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAENAKG--DVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGA 89 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~~~~~--~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~ 89 (110)
+|...++++..+++..+..++.|+..|+. +|||+|||+ |+|.+++..+.. +.+ ++.....+.|.|.+.|||.|+
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~-~~~-~~~~~~~~~~~g~~~~~~~~~ 79 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGA-KDV-RVIRLINERNGGLGAARNAGL 79 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhh-hcc-eEEEeecccCCChHHHHHhhH
Confidence 35577889999999999999999998873 599999999 788999998877 433 577777889999999999999
Q ss_pred HhcCCCEEEEEcCCCCcCCC
Q psy5323 90 ENAKGDVLMFLDSHCELGTN 109 (110)
Q Consensus 90 ~~a~g~~i~flD~d~~~~~~ 109 (110)
..++|+++.|+|+|.. ++.
T Consensus 80 ~~~~~~~~~~~d~d~~-~~~ 98 (291)
T COG0463 80 EYARGDYIVFLDADDQ-HPP 98 (291)
T ss_pred HhccCCEEEEEccCCC-CCH
Confidence 9999999999999998 764
No 26
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.63 E-value=2e-15 Score=102.83 Aligned_cols=90 Identities=18% Similarity=0.286 Sum_probs=72.2
Q ss_pred EEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEE-EccCCcchHHHHHHHHHhcCC
Q psy5323 20 LIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLI-RLKERAGLIRARIAGAENAKG 94 (110)
Q Consensus 20 ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i-~~~~~~G~~~arn~G~~~a~g 94 (110)
+++.+++...+.+++.++..|+ ..||++|||+ +.+.+++..+.. +.+.+++.+ +...+.|.+.++|.|++.|+|
T Consensus 2 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~g 80 (182)
T cd06420 2 IITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKS-QFPIPIKHVWQEDEGFRKAKIRNKAIAAAKG 80 (182)
T ss_pred EEeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHh-hcCCceEEEEcCCcchhHHHHHHHHHHHhcC
Confidence 5677778888999999998775 6899999999 667788887766 444334433 444445788999999999999
Q ss_pred CEEEEEcCCCCcCCCC
Q psy5323 95 DVLMFLDSHCELGTNW 110 (110)
Q Consensus 95 ~~i~flD~d~~~~~~W 110 (110)
+|++|+|+|+.+.++|
T Consensus 81 ~~i~~lD~D~~~~~~~ 96 (182)
T cd06420 81 DYLIFIDGDCIPHPDF 96 (182)
T ss_pred CEEEEEcCCcccCHHH
Confidence 9999999999998876
No 27
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.63 E-value=2.1e-15 Score=105.55 Aligned_cols=91 Identities=16% Similarity=0.281 Sum_probs=74.0
Q ss_pred EEEecCCchHHHHHHHhcccccc--C--CEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEcc--CCcchHHHHHHHHH
Q psy5323 19 RLIRLKERAGLIRARIAGAENAK--G--DVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLK--ERAGLIRARIAGAE 90 (110)
Q Consensus 19 ~ii~~~~~~~~i~~~l~~~~~~~--~--~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~--~~~G~~~arn~G~~ 90 (110)
+||+.+++...+.+++.|+..|+ . .|||||||+ |++.+.+. +..+....+++++..+ .+.|.+.|+|.|++
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~ 79 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSRVSISGKKNALTTAIK 79 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccCcccchhHHHHHHHHH
Confidence 36778888899999999987665 3 799999999 66777776 3321222368888776 57899999999999
Q ss_pred hcCCCEEEEEcCCCCcCCCC
Q psy5323 91 NAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 91 ~a~g~~i~flD~d~~~~~~W 110 (110)
.++|+|++|+|+|+.+.++|
T Consensus 80 ~~~~d~i~~~D~D~~~~~~~ 99 (229)
T cd04192 80 AAKGDWIVTTDADCVVPSNW 99 (229)
T ss_pred HhcCCEEEEECCCcccCHHH
Confidence 99999999999999999886
No 28
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.63 E-value=3.1e-15 Score=104.17 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=76.3
Q ss_pred CCeEEEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCC-CcEEEEEccCCcch---HHHHH
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLP-PKVRLIRLKERAGL---IRARI 86 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~-~~~~~i~~~~~~G~---~~arn 86 (110)
|...+|++.++.+..+.++|.++..|+ .+|||+|||+ |++.++++.+.. +++ .+++++....+.|. +.++|
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~n 79 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIA-KYPNVDARLLIGGEKVGINPKVNNLI 79 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHH-HCCCCcEEEEecCCcCCCCHhHHHHH
Confidence 345677887777778899999988765 5899999999 678888888877 665 24677777666554 45678
Q ss_pred HHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 87 AGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 87 ~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
.|++.++|+|++|+|+|+...++|
T Consensus 80 ~g~~~a~~d~i~~~D~D~~~~~~~ 103 (196)
T cd02520 80 KGYEEARYDILVISDSDISVPPDY 103 (196)
T ss_pred HHHHhCCCCEEEEECCCceEChhH
Confidence 999999999999999999998887
No 29
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.63 E-value=2.9e-15 Score=116.69 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=82.1
Q ss_pred CCCeEEEEecCCchHHHHHHHhccccccC----CEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHH
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAENAKG----DVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIA 87 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~~~~~----~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~ 87 (110)
.|...++++.++.+..+.+++.++..|+. .||++|||+ |+|.+.++++.+ +++ ++++...+.+.|.+.|+|.
T Consensus 48 ~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~-~~~-~v~v~~~~~~~Gka~AlN~ 125 (439)
T TIGR03111 48 LPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQN-EFP-GLSLRYMNSDQGKAKALNA 125 (439)
T ss_pred CCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHH-hCC-CeEEEEeCCCCCHHHHHHH
Confidence 56667888988899999999999887762 489999999 778888887766 666 7888877888999999999
Q ss_pred HHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 88 GAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 88 G~~~a~g~~i~flD~d~~~~~~W 110 (110)
|++.++|+|++|+|+|+.++++|
T Consensus 126 gl~~s~g~~v~~~DaD~~~~~d~ 148 (439)
T TIGR03111 126 AIYNSIGKYIIHIDSDGKLHKDA 148 (439)
T ss_pred HHHHccCCEEEEECCCCCcChHH
Confidence 99999999999999999998865
No 30
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.62 E-value=4.3e-15 Score=115.73 Aligned_cols=95 Identities=21% Similarity=0.210 Sum_probs=82.0
Q ss_pred CCCeEEEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHH
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGA 89 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~ 89 (110)
.|...++++.++.+..+.+++.++..|+ ..||++|||+ |++.+.++++.+ +++ ++++++.++|.|.+.|+|.|+
T Consensus 74 ~p~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~-~~~-~v~vv~~~~n~Gka~AlN~gl 151 (444)
T PRK14583 74 HPLVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLA-EDP-RLRVIHLAHNQGKAIALRMGA 151 (444)
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHH-hCC-CEEEEEeCCCCCHHHHHHHHH
Confidence 3445678888888888999999987765 5799999999 678888888777 666 799999899999999999999
Q ss_pred HhcCCCEEEEEcCCCCcCCCC
Q psy5323 90 ENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 90 ~~a~g~~i~flD~d~~~~~~W 110 (110)
+.++|||++++|+|+.++++|
T Consensus 152 ~~a~~d~iv~lDAD~~~~~d~ 172 (444)
T PRK14583 152 AAARSEYLVCIDGDALLDKNA 172 (444)
T ss_pred HhCCCCEEEEECCCCCcCHHH
Confidence 999999999999999988764
No 31
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.62 E-value=5e-15 Score=104.83 Aligned_cols=91 Identities=16% Similarity=0.247 Sum_probs=77.3
Q ss_pred eEEEEecCCchHHHHHHHhcccccc----CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHH
Q psy5323 17 KVRLIRLKERAGLIRARIAGAENAK----GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAE 90 (110)
Q Consensus 17 ~v~ii~~~~~~~~i~~~l~~~~~~~----~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~ 90 (110)
..++++.++++..+.+++.++..|+ .+|||+|||+ |++.+.++.+.. +.+ .++++.++. .|.+.|+|.|++
T Consensus 2 ~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~-~~~-~v~~i~~~~-~~~~~a~N~g~~ 78 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAA-KDP-RIRLIDNPK-RIQSAGLNIGIR 78 (249)
T ss_pred EEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHh-cCC-eEEEEeCCC-CCchHHHHHHHH
Confidence 3567788888888999999987664 4799999999 678888888877 555 699998764 589999999999
Q ss_pred hcCCCEEEEEcCCCCcCCCC
Q psy5323 91 NAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 91 ~a~g~~i~flD~d~~~~~~W 110 (110)
.|+|||++|+|+|+.+.++|
T Consensus 79 ~a~~d~v~~lD~D~~~~~~~ 98 (249)
T cd02525 79 NSRGDIIIRVDAHAVYPKDY 98 (249)
T ss_pred HhCCCEEEEECCCccCCHHH
Confidence 99999999999999998876
No 32
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.60 E-value=8e-15 Score=112.41 Aligned_cols=97 Identities=14% Similarity=0.201 Sum_probs=80.9
Q ss_pred hCCCeEEEEecCCchHHHHHHHhcccccc---CCEEEEEeCC--CCchHHHHHHHhccCC--CcEEEEEccC----Ccch
Q psy5323 13 RLPPKVRLIRLKERAGLIRARIAGAENAK---GDVLMFLDSH--YELQGKLDYYIQTRLP--PKVRLIRLKE----RAGL 81 (110)
Q Consensus 13 ~lp~~v~ii~~~~~~~~i~~~l~~~~~~~---~~EiivVDD~--d~t~~~l~~~~~~~~~--~~~~~i~~~~----~~G~ 81 (110)
..|...+||+..+.+..+.+++.++..|+ ..|||||||+ |+|.+.++++.+ ++| .++++++.+. ..|.
T Consensus 38 ~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~-~~~~~~~i~vi~~~~~~~g~~Gk 116 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAAR-AYGRGDRLTVVSGQPLPPGWSGK 116 (384)
T ss_pred CCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHH-hcCCCCcEEEecCCCCCCCCcch
Confidence 35666788899998999999999998775 3699999999 778888888766 554 2688887532 3588
Q ss_pred HHHHHHHHHhcC-----CCEEEEEcCCCCcCCCC
Q psy5323 82 IRARIAGAENAK-----GDVLMFLDSHCELGTNW 110 (110)
Q Consensus 82 ~~arn~G~~~a~-----g~~i~flD~d~~~~~~W 110 (110)
..|.|.|++.|+ |||++|+|+|+..+++|
T Consensus 117 ~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~ 150 (384)
T TIGR03469 117 LWAVSQGIAAARTLAPPADYLLLTDADIAHGPDN 150 (384)
T ss_pred HHHHHHHHHHHhccCCCCCEEEEECCCCCCChhH
Confidence 889999999999 99999999999999886
No 33
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.60 E-value=6.5e-15 Score=102.22 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=76.2
Q ss_pred EEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhc---
Q psy5323 20 LIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENA--- 92 (110)
Q Consensus 20 ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a--- 92 (110)
||+.++++..+..++.++..|+ ..|||+|||+ |.+.+.+.++.. .. ++++++++.|.|.+.++|.|++.|
T Consensus 2 iI~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~-~~--~i~~~~~~~n~g~~~~~n~~~~~a~~~ 78 (202)
T cd04185 2 VVVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGD-LD--NIVYLRLPENLGGAGGFYEGVRRAYEL 78 (202)
T ss_pred EEEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcC-CC--ceEEEECccccchhhHHHHHHHHHhcc
Confidence 6777788899999999998876 4799999999 678888887655 43 389999999999999999999976
Q ss_pred CCCEEEEEcCCCCcCCCC
Q psy5323 93 KGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 93 ~g~~i~flD~d~~~~~~W 110 (110)
+|+|++|+|+|+.+.++|
T Consensus 79 ~~d~v~~ld~D~~~~~~~ 96 (202)
T cd04185 79 GYDWIWLMDDDAIPDPDA 96 (202)
T ss_pred CCCEEEEeCCCCCcChHH
Confidence 799999999999998876
No 34
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.59 E-value=9e-15 Score=110.63 Aligned_cols=93 Identities=11% Similarity=0.109 Sum_probs=76.8
Q ss_pred CeEEEEecCCchHHHHHHHhccccc----------cCCEEEEEeCC--CCchHHHHHHHhccC--C-CcEEEEEccCCcc
Q psy5323 16 PKVRLIRLKERAGLIRARIAGAENA----------KGDVLMFLDSH--YELQGKLDYYIQTRL--P-PKVRLIRLKERAG 80 (110)
Q Consensus 16 ~~v~ii~~~~~~~~i~~~l~~~~~~----------~~~EiivVDD~--d~t~~~l~~~~~~~~--~-~~~~~i~~~~~~G 80 (110)
...++++.++.+..+.+++.++..+ ...|||+|||| |+|.+.+..+.. .. + .++++++++.|.|
T Consensus 71 ~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~-~~~~~~~~i~vi~~~~N~G 149 (333)
T PTZ00260 71 DLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWR-QNINPNIDIRLLSLLRNKG 149 (333)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHH-hcCCCCCcEEEEEcCCCCC
Confidence 3567788888888888887776432 15799999999 889898888876 42 1 2599999999999
Q ss_pred hHHHHHHHHHhcCCCEEEEEcCCCCcCCC
Q psy5323 81 LIRARIAGAENAKGDVLMFLDSHCELGTN 109 (110)
Q Consensus 81 ~~~arn~G~~~a~g~~i~flD~d~~~~~~ 109 (110)
.+.|+|.|++.|+|+||+|+|+|....++
T Consensus 150 ~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~ 178 (333)
T PTZ00260 150 KGGAVRIGMLASRGKYILMVDADGATDID 178 (333)
T ss_pred hHHHHHHHHHHccCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999987654
No 35
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.59 E-value=1.3e-14 Score=102.12 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=74.6
Q ss_pred CCeEEEEecCCc-hHHHHHHHhccccccC----CEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcc-hHHHHH
Q psy5323 15 PPKVRLIRLKER-AGLIRARIAGAENAKG----DVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAG-LIRARI 86 (110)
Q Consensus 15 p~~v~ii~~~~~-~~~i~~~l~~~~~~~~----~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G-~~~arn 86 (110)
|...+|++.+++ ..++++++.++..|+. +|||||||+ |.+.++++.+.. ++ .++++..+.+.| .++++|
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~n 77 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGV-EY--GYRYLTRPDNRHAKAGNLN 77 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhc-cc--CceEEEeCCCCCCcHHHHH
Confidence 445677787775 4789999999987763 599999999 668888887755 44 467776666655 577899
Q ss_pred HHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 87 AGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 87 ~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
.|++.++||||+|+|+|+...++|
T Consensus 78 ~~~~~a~~d~i~~lD~D~~~~~~~ 101 (234)
T cd06421 78 NALAHTTGDFVAILDADHVPTPDF 101 (234)
T ss_pred HHHHhCCCCEEEEEccccCcCccH
Confidence 999999999999999999999876
No 36
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.58 E-value=1.1e-14 Score=102.93 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=72.7
Q ss_pred EEEEecCCch-HHHHHHHhccccccCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCC
Q psy5323 18 VRLIRLKERA-GLIRARIAGAENAKGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKG 94 (110)
Q Consensus 18 v~ii~~~~~~-~~i~~~l~~~~~~~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g 94 (110)
.++++.++.+ ..+.+++.++..|+..|||||||+ |.+...+... . +.+ .++++. .++.|.+.|+|.|++.|+|
T Consensus 3 sVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~-~-~~~-~~~v~~-~~~~g~~~a~n~g~~~a~~ 78 (235)
T cd06434 3 TVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQT-V-KYG-GIFVIT-VPHPGKRRALAEGIRHVTT 78 (235)
T ss_pred EEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhh-c-cCC-cEEEEe-cCCCChHHHHHHHHHHhCC
Confidence 4667777777 999999999998889999999999 5566655332 2 333 566665 6788999999999999999
Q ss_pred CEEEEEcCCCCcCCCC
Q psy5323 95 DVLMFLDSHCELGTNW 110 (110)
Q Consensus 95 ~~i~flD~d~~~~~~W 110 (110)
+|++|+|+|+.+.++|
T Consensus 79 d~v~~lD~D~~~~~~~ 94 (235)
T cd06434 79 DIVVLLDSDTVWPPNA 94 (235)
T ss_pred CEEEEECCCceeChhH
Confidence 9999999999999887
No 37
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.58 E-value=1.3e-14 Score=96.60 Aligned_cols=86 Identities=21% Similarity=0.241 Sum_probs=73.2
Q ss_pred EEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCC
Q psy5323 20 LIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGD 95 (110)
Q Consensus 20 ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~ 95 (110)
+++..++...+.+++.++..++ ..||+++||+ +.+.+.+... .+ +++++..+.+.|.+.|+|.|++.++++
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~----~~-~~~~~~~~~~~g~~~a~n~~~~~~~~~ 76 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLREL----FP-EVRLIRNGENLGFGAGNNQGIREAKGD 76 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHh----CC-CeEEEecCCCcChHHHhhHHHhhCCCC
Confidence 5777778999999999998775 6899999999 5565655543 22 688999999999999999999999999
Q ss_pred EEEEEcCCCCcCCCC
Q psy5323 96 VLMFLDSHCELGTNW 110 (110)
Q Consensus 96 ~i~flD~d~~~~~~W 110 (110)
|++|+|+|+.+.++|
T Consensus 77 ~i~~~D~D~~~~~~~ 91 (166)
T cd04186 77 YVLLLNPDTVVEPGA 91 (166)
T ss_pred EEEEECCCcEECccH
Confidence 999999999998875
No 38
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.57 E-value=2.3e-14 Score=108.09 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=75.5
Q ss_pred CCeEEEEecCCchHHHHHHHhccc---cc--cCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHH
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAE---NA--KGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIA 87 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~---~~--~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~ 87 (110)
+...++++.++.+..+.+++.++. .+ ..+|||+|||+ |.|.+.+.++.+ +.+.+++.+.++.|.|.+.|+|.
T Consensus 6 ~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~-~~~~~v~~i~~~~n~G~~~A~~~ 84 (325)
T PRK10714 6 KKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQ-APDSHIVAILLNRNYGQHSAIMA 84 (325)
T ss_pred CeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHh-hcCCcEEEEEeCCCCCHHHHHHH
Confidence 445688888888887877666543 22 25799999999 778888887765 43336888888889999999999
Q ss_pred HHHhcCCCEEEEEcCCCCcCCC
Q psy5323 88 GAENAKGDVLMFLDSHCELGTN 109 (110)
Q Consensus 88 G~~~a~g~~i~flD~d~~~~~~ 109 (110)
|++.|+|||++++|+|+...+.
T Consensus 85 G~~~A~gd~vv~~DaD~q~~p~ 106 (325)
T PRK10714 85 GFSHVTGDLIITLDADLQNPPE 106 (325)
T ss_pred HHHhCCCCEEEEECCCCCCCHH
Confidence 9999999999999999998764
No 39
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.57 E-value=2.1e-14 Score=101.78 Aligned_cols=91 Identities=11% Similarity=0.234 Sum_probs=73.3
Q ss_pred EEEecCCch-HHHHHHHhcccccc--CCEEEEEeCC--CCch-HHHHHHHhccCCCcEEEEEccCCcch-HHHHHHHHHh
Q psy5323 19 RLIRLKERA-GLIRARIAGAENAK--GDVLMFLDSH--YELQ-GKLDYYIQTRLPPKVRLIRLKERAGL-IRARIAGAEN 91 (110)
Q Consensus 19 ~ii~~~~~~-~~i~~~l~~~~~~~--~~EiivVDD~--d~t~-~~l~~~~~~~~~~~~~~i~~~~~~G~-~~arn~G~~~ 91 (110)
++++.++.+ ..+++++.++..++ ..||+||||+ |++. ..++.+.. +.+.++++++...+.|. ++|+|.|++.
T Consensus 2 iiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~-~~~~~i~~i~~~~~~G~~~~a~n~g~~~ 80 (236)
T cd06435 2 IHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCA-QLGERFRFFHVEPLPGAKAGALNYALER 80 (236)
T ss_pred eeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHH-HhCCcEEEEEcCCCCCCchHHHHHHHHh
Confidence 467766665 78999999988775 5899999999 5553 56666665 55447888888877785 9999999999
Q ss_pred cC--CCEEEEEcCCCCcCCCC
Q psy5323 92 AK--GDVLMFLDSHCELGTNW 110 (110)
Q Consensus 92 a~--g~~i~flD~d~~~~~~W 110 (110)
+. ||||+|+|+|+.++++|
T Consensus 81 a~~~~d~i~~lD~D~~~~~~~ 101 (236)
T cd06435 81 TAPDAEIIAVIDADYQVEPDW 101 (236)
T ss_pred cCCCCCEEEEEcCCCCcCHHH
Confidence 86 69999999999998875
No 40
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.57 E-value=2.1e-14 Score=102.64 Aligned_cols=85 Identities=18% Similarity=0.078 Sum_probs=70.7
Q ss_pred eEEEEecCCchHHHHHHHhccccccCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCC
Q psy5323 17 KVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKG 94 (110)
Q Consensus 17 ~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g 94 (110)
...+++..+.+..+.+++.++..+ ..|||||||+ |+|.++++. + ++++++. .+.|.+.|||.|+..|+|
T Consensus 2 isvii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~-----~--~~~v~~~-~~~g~~~~~n~~~~~a~~ 72 (229)
T cd02511 2 LSVVIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKE-----Y--GAKVYQR-WWDGFGAQRNFALELATN 72 (229)
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHH-----c--CCEEEEC-CCCChHHHHHHHHHhCCC
Confidence 346677777888999999998766 3699999999 667766652 2 4777877 888999999999999999
Q ss_pred CEEEEEcCCCCcCCCC
Q psy5323 95 DVLMFLDSHCELGTNW 110 (110)
Q Consensus 95 ~~i~flD~d~~~~~~W 110 (110)
+||+|+|+|...+++|
T Consensus 73 d~vl~lDaD~~~~~~~ 88 (229)
T cd02511 73 DWVLSLDADERLTPEL 88 (229)
T ss_pred CEEEEEeCCcCcCHHH
Confidence 9999999999988764
No 41
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.56 E-value=2.4e-14 Score=99.64 Aligned_cols=89 Identities=18% Similarity=0.224 Sum_probs=72.3
Q ss_pred EEEecCCchHHHHHHHhcccccc-CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEcc---CCcchHHHHHHHHHhc
Q psy5323 19 RLIRLKERAGLIRARIAGAENAK-GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLK---ERAGLIRARIAGAENA 92 (110)
Q Consensus 19 ~ii~~~~~~~~i~~~l~~~~~~~-~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~---~~~G~~~arn~G~~~a 92 (110)
+||+.++.+..+.+++.++..++ ..|||+|||+ |.|.++++ +.. ..+ ++++++.. .+.|.+.|+|.|++.+
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~-~~~-~~~-~v~~i~~~~~~~~~Gk~~aln~g~~~~ 77 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR-LAI-TDS-RVHLLRRHLPNARTGKGDALNAAYDQI 77 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh-hee-cCC-cEEEEeccCCcCCCCHHHHHHHHHHHH
Confidence 36788888899999999987665 5799999999 66777776 322 344 78888753 5679999999999998
Q ss_pred C-----------CCEEEEEcCCCCcCCCC
Q psy5323 93 K-----------GDVLMFLDSHCELGTNW 110 (110)
Q Consensus 93 ~-----------g~~i~flD~d~~~~~~W 110 (110)
+ ++|++|+|+|+.+.++|
T Consensus 78 ~~~~~~~g~~~~~d~v~~~DaD~~~~~~~ 106 (191)
T cd06436 78 RQILIEEGADPERVIIAVIDADGRLDPNA 106 (191)
T ss_pred hhhccccccCCCccEEEEECCCCCcCHhH
Confidence 6 37999999999999876
No 42
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.54 E-value=3.9e-14 Score=103.63 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=68.2
Q ss_pred CCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhc---CCCEEEE
Q psy5323 24 KERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENA---KGDVLMF 99 (110)
Q Consensus 24 ~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a---~g~~i~f 99 (110)
+.....+..++.++..| ..|||||||+ ++. +.++...+ ..+ +++++++++|.|.++|+|.|++.| .+|||+|
T Consensus 4 n~~~~~l~~~l~sl~~q-~~~iiVVDN~S~~~-~~~~~~~~-~~~-~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~ 79 (281)
T TIGR01556 4 NPDLEHLGELITSLPKQ-VDRIIAVDNSPHSD-QPLKNARL-RGQ-KIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLL 79 (281)
T ss_pred CccHHHHHHHHHHHHhc-CCEEEEEECcCCCc-HhHHHHhc-cCC-CeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEE
Confidence 33467888899998877 4799999999 433 44555545 555 799999999999999999999999 7999999
Q ss_pred EcCCCCcCCCC
Q psy5323 100 LDSHCELGTNW 110 (110)
Q Consensus 100 lD~d~~~~~~W 110 (110)
+|+|+.+.++|
T Consensus 80 lD~D~~~~~~~ 90 (281)
T TIGR01556 80 LDQDSRPGNAF 90 (281)
T ss_pred ECCCCCCCHHH
Confidence 99999988765
No 43
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.53 E-value=3.8e-14 Score=97.59 Aligned_cols=87 Identities=14% Similarity=0.040 Sum_probs=69.1
Q ss_pred EEEecCCchHHHHHHHhcccccc----CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhc
Q psy5323 19 RLIRLKERAGLIRARIAGAENAK----GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENA 92 (110)
Q Consensus 19 ~ii~~~~~~~~i~~~l~~~~~~~----~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a 92 (110)
++|+.++.+..+.+++.++..+. ..||++|||+ |.|.+++..+ ...+.+...+.+.|.+.|+|.|++.+
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~-----~~~~~~~~~~~~~gk~~aln~g~~~a 75 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA-----GATVLERHDPERRGKGYALDFGFRHL 75 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc-----CCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 36788888899999999987664 3799999999 6676666533 21344445567889999999999987
Q ss_pred -----CCCEEEEEcCCCCcCCCC
Q psy5323 93 -----KGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 93 -----~g~~i~flD~d~~~~~~W 110 (110)
+|+|++|+|+|+.+.++|
T Consensus 76 ~~~~~~~d~v~~~DaD~~~~p~~ 98 (183)
T cd06438 76 LNLADDPDAVVVFDADNLVDPNA 98 (183)
T ss_pred HhcCCCCCEEEEEcCCCCCChhH
Confidence 499999999999999876
No 44
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.50 E-value=5.5e-14 Score=105.37 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=73.8
Q ss_pred CCCeEEEEecCCchHHHHHHHhcccccc----CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEE-EccCCcchHHHHH
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAENAK----GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLI-RLKERAGLIRARI 86 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~~~~----~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i-~~~~~~G~~~arn 86 (110)
.|...++|+.++.+..+.+++.++..+. ..|||||||+ |.|.+.+..+.. +.-...+++ .++.|.|.+.|+|
T Consensus 30 ~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~-~v~~~~~~~~~~~~n~Gkg~A~~ 108 (306)
T PRK13915 30 GRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGA-RVVSREEILPELPPRPGKGEALW 108 (306)
T ss_pred CCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcc-hhhcchhhhhccccCCCHHHHHH
Confidence 3556788999999999999999887543 4799999999 778777776533 211012222 2477899999999
Q ss_pred HHHHhcCCCEEEEEcCCCC-cCCCC
Q psy5323 87 AGAENAKGDVLMFLDSHCE-LGTNW 110 (110)
Q Consensus 87 ~G~~~a~g~~i~flD~d~~-~~~~W 110 (110)
.|+..++|+|++|+|+|+. ..++|
T Consensus 109 ~g~~~a~gd~vv~lDaD~~~~~p~~ 133 (306)
T PRK13915 109 RSLAATTGDIVVFVDADLINFDPMF 133 (306)
T ss_pred HHHHhcCCCEEEEEeCccccCCHHH
Confidence 9999999999999999996 77665
No 45
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.49 E-value=2.7e-13 Score=103.54 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=76.9
Q ss_pred CCCeEEEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCC-cEEEEEccCCcch---HHHH
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPP-KVRLIRLKERAGL---IRAR 85 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~-~~~~i~~~~~~G~---~~ar 85 (110)
.|...++++.++.+..+.+++.|+..|+ .+|||++||+ |.+.+.++++.+ ++|. +++++..+.+.|. ..+.
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~-~~p~~~i~~v~~~~~~G~~~K~~~l 118 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRA-DFPDADIDLVIDARRHGPNRKVSNL 118 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHH-hCCCCceEEEECCCCCCCChHHHHH
Confidence 4556678898888889999999988776 4899999999 446788888776 6662 4788877766663 4456
Q ss_pred HHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 86 IAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 86 n~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
+.+++.|+|||++|+|||+.+.++|
T Consensus 119 ~~~~~~a~ge~i~~~DaD~~~~p~~ 143 (373)
T TIGR03472 119 INMLPHARHDILVIADSDISVGPDY 143 (373)
T ss_pred HHHHHhccCCEEEEECCCCCcChhH
Confidence 6689999999999999999999887
No 46
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.49 E-value=1.7e-13 Score=95.83 Aligned_cols=84 Identities=23% Similarity=0.274 Sum_probs=68.1
Q ss_pred EEEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC
Q psy5323 18 VRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK 93 (110)
Q Consensus 18 v~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~ 93 (110)
.++++.++++..+.+++.++..|+ ..||+||||+ |++.+.+. . + +++++. .+.|.+.|+|.|++.|+
T Consensus 2 svii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~-----~-~-~~~~~~--~~~g~~~a~n~g~~~a~ 72 (221)
T cd02522 2 SIIIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIAR-----S-A-GVVVIS--SPKGRARQMNAGAAAAR 72 (221)
T ss_pred EEEEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHh-----c-C-CeEEEe--CCcCHHHHHHHHHHhcc
Confidence 456777777889999999988776 5899999999 55655443 2 2 466665 45689999999999999
Q ss_pred CCEEEEEcCCCCcCCCC
Q psy5323 94 GDVLMFLDSHCELGTNW 110 (110)
Q Consensus 94 g~~i~flD~d~~~~~~W 110 (110)
|+|++|+|+|+.+.++|
T Consensus 73 ~~~i~~~D~D~~~~~~~ 89 (221)
T cd02522 73 GDWLLFLHADTRLPPDW 89 (221)
T ss_pred CCEEEEEcCCCCCChhH
Confidence 99999999999999876
No 47
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.46 E-value=1.2e-13 Score=97.31 Aligned_cols=95 Identities=24% Similarity=0.355 Sum_probs=66.2
Q ss_pred CCeEEEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCC-cEEEEEccCCcc---hHHHHH
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPP-KVRLIRLKERAG---LIRARI 86 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~-~~~~i~~~~~~G---~~~arn 86 (110)
|...++|+..++...+.+++.++..++ ..||++|||+ +.+.+.++.+.+ +++. ++++++.+.+.| .+.|+|
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~-~~~~~~v~vi~~~~~~g~~~k~~a~n 79 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAA-RYPRVRVRVIRRPRNPGPGGKARALN 79 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHH-TTGG-GEEEEE----HHHHHHHHHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHH-HcCCCceEEeecCCCCCcchHHHHHH
Confidence 556788999999889999999988664 6899999999 566777777766 6663 478988877665 688999
Q ss_pred HHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 87 AGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 87 ~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
.|++.++++||+|+|+|+.+.++|
T Consensus 80 ~~~~~~~~d~i~~lD~D~~~~p~~ 103 (228)
T PF13641_consen 80 EALAAARGDYILFLDDDTVLDPDW 103 (228)
T ss_dssp HHHHH---SEEEEE-SSEEE-CHH
T ss_pred HHHHhcCCCEEEEECCCcEECHHH
Confidence 999999999999999999998875
No 48
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.41 E-value=1.2e-12 Score=96.64 Aligned_cols=89 Identities=22% Similarity=0.395 Sum_probs=64.7
Q ss_pred EEEecCCchH------HHHHHHhcccc---ccCCEEEEEeCC-CC-chHHHHHHHhccCCCcEEEEEccCCc---chHHH
Q psy5323 19 RLIRLKERAG------LIRARIAGAEN---AKGDVLMFLDSH-YE-LQGKLDYYIQTRLPPKVRLIRLKERA---GLIRA 84 (110)
Q Consensus 19 ~ii~~~~~~~------~i~~~l~~~~~---~~~~EiivVDD~-d~-t~~~l~~~~~~~~~~~~~~i~~~~~~---G~~~a 84 (110)
+|||...+.. -+..++.++.. ....|||||||+ +. +.+.+..+.+ ... ..+++..+.+. |.+.|
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~-~~~-~~~~i~~~~~~~~f~~a~a 79 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCE-KNG-FIRYIRHEDNGEPFSRAKA 79 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHh-ccC-ceEEEEcCCCCCCcCHHHH
Confidence 4566544442 24445555554 336899999999 44 4466777766 443 34477777666 99999
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcCCC
Q psy5323 85 RIAGAENAKGDVLMFLDSHCELGTN 109 (110)
Q Consensus 85 rn~G~~~a~g~~i~flD~d~~~~~~ 109 (110)
||.|++.|+|++|+|+|+||.++++
T Consensus 80 rN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 80 RNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred HHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 9999999999999999999998875
No 49
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=1.9e-11 Score=93.69 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=79.0
Q ss_pred CCeEEEEecCCchH-HHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEc-cCCcchHHHHHHH
Q psy5323 15 PPKVRLIRLKERAG-LIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRL-KERAGLIRARIAG 88 (110)
Q Consensus 15 p~~v~ii~~~~~~~-~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~-~~~~G~~~arn~G 88 (110)
|...++++.++.+. .+.+++.++.++. ..|+++|||+ |++.+++++... ++++++++++. ..+.|.++|.|.|
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~gK~~al~~~ 132 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGA-EYGPNFRVIYPEKKNGGKAGALNNG 132 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHh-hcCcceEEEeccccCccchHHHHHH
Confidence 66667788655544 9999999998776 3599999998 778899998887 66336777754 5788999999999
Q ss_pred HHhcCCCEEEEEcCCCCcCCCC
Q psy5323 89 AENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 89 ~~~a~g~~i~flD~d~~~~~~W 110 (110)
+..++||+++++|||..++++|
T Consensus 133 l~~~~~d~V~~~DaD~~~~~d~ 154 (439)
T COG1215 133 LKRAKGDVVVILDADTVPEPDA 154 (439)
T ss_pred HhhcCCCEEEEEcCCCCCChhH
Confidence 9999999999999999998875
No 50
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.28 E-value=1.9e-11 Score=102.00 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=67.8
Q ss_pred CCCeEEEEecCCch-HHHHHHHhcccccc----CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCC-cchHHHH
Q psy5323 14 LPPKVRLIRLKERA-GLIRARIAGAENAK----GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKER-AGLIRAR 85 (110)
Q Consensus 14 lp~~v~ii~~~~~~-~~i~~~l~~~~~~~----~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~-~G~~~ar 85 (110)
.|...++|+.+|.+ .++++++.++..++ ..||+|+||+ |++.+.++ +. ++++++.++| .|.++++
T Consensus 259 ~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~-----~~--~v~yI~R~~n~~gKAGnL 331 (852)
T PRK11498 259 WPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQ-----EV--GVKYIARPTHEHAKAGNI 331 (852)
T ss_pred CCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHH-----HC--CcEEEEeCCCCcchHHHH
Confidence 35455677766554 67788888776554 3699999999 55544443 33 4888877654 4689999
Q ss_pred HHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 86 IAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 86 n~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
|.|++.++||||+++|||+.++++|
T Consensus 332 N~aL~~a~GEyIavlDAD~ip~pdf 356 (852)
T PRK11498 332 NNALKYAKGEFVAIFDCDHVPTRSF 356 (852)
T ss_pred HHHHHhCCCCEEEEECCCCCCChHH
Confidence 9999999999999999999998765
No 51
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.27 E-value=4e-11 Score=98.60 Aligned_cols=94 Identities=13% Similarity=0.194 Sum_probs=70.6
Q ss_pred CCCeEEEEecCCc-hHHHHHHHhcccccc----CCEEEEEeCC--CCc--------------hHHHHHHHhccCCCcEEE
Q psy5323 14 LPPKVRLIRLKER-AGLIRARIAGAENAK----GDVLMFLDSH--YEL--------------QGKLDYYIQTRLPPKVRL 72 (110)
Q Consensus 14 lp~~v~ii~~~~~-~~~i~~~l~~~~~~~----~~EiivVDD~--d~t--------------~~~l~~~~~~~~~~~~~~ 72 (110)
.|...++|+.++. ..++++++.++..++ ..||++|||+ |.| ...+.++.+ +. ++++
T Consensus 130 ~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~-~~--~v~y 206 (713)
T TIGR03030 130 WPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR-KL--GVNY 206 (713)
T ss_pred CCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH-Hc--CcEE
Confidence 3444467786655 467778888876654 3699999999 555 234444444 44 5888
Q ss_pred EEccCCc-chHHHHHHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 73 IRLKERA-GLIRARIAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 73 i~~~~~~-G~~~arn~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
++.++|. |.+++.|.|+++++|||++|+|||+.++++|
T Consensus 207 i~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~ 245 (713)
T TIGR03030 207 ITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDF 245 (713)
T ss_pred EECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhH
Confidence 8877765 5789999999999999999999999998875
No 52
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.27 E-value=7.7e-11 Score=75.93 Aligned_cols=89 Identities=22% Similarity=0.329 Sum_probs=73.3
Q ss_pred EEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCC
Q psy5323 20 LIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGD 95 (110)
Q Consensus 20 ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~ 95 (110)
+++..++...+..++.++..+. ..|++++||+ +.+...+..... ... .+..+....+.|.+.++|.|+..++++
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~d 79 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAK-KDP-RVIRVINEENQGLAAARNAGLKAARGE 79 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHh-cCC-CeEEEEecCCCChHHHHHHHHHHhcCC
Confidence 5677777888999999988776 7899999999 556666666554 322 467777888999999999999999999
Q ss_pred EEEEEcCCCCcCCCC
Q psy5323 96 VLMFLDSHCELGTNW 110 (110)
Q Consensus 96 ~i~flD~d~~~~~~W 110 (110)
+++|+|+|+.+.++|
T Consensus 80 ~v~~~d~D~~~~~~~ 94 (156)
T cd00761 80 YILFLDADDLLLPDW 94 (156)
T ss_pred EEEEECCCCccCccH
Confidence 999999999988764
No 53
>KOG2978|consensus
Probab=99.14 E-value=2.9e-10 Score=80.32 Aligned_cols=89 Identities=20% Similarity=0.229 Sum_probs=65.0
Q ss_pred EEEe-cCCchHH--HHHHHhcccc--ccCCEEEEEeCC--CCchHHHHHHHhccC-CCcEEEEEccCCcchHHHHHHHHH
Q psy5323 19 RLIR-LKERAGL--IRARIAGAEN--AKGDVLMFLDSH--YELQGKLDYYIQTRL-PPKVRLIRLKERAGLIRARIAGAE 90 (110)
Q Consensus 19 ~ii~-~~~~~~~--i~~~l~~~~~--~~~~EiivVDD~--d~t~~~l~~~~~~~~-~~~~~~i~~~~~~G~~~arn~G~~ 90 (110)
++++ +|+++.+ +..-+..... ...+|||+|||+ |.|.+.++.+.. -+ .+++.+.......|++.|...|+.
T Consensus 7 vilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k-~yg~d~i~l~pR~~klGLgtAy~hgl~ 85 (238)
T KOG2978|consen 7 VILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQK-IYGEDNILLKPRTKKLGLGTAYIHGLK 85 (238)
T ss_pred EEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHH-HhCCCcEEEEeccCcccchHHHHhhhh
Confidence 4555 4555443 2233333322 347999999999 778888777553 22 237888888888999999999999
Q ss_pred hcCCCEEEEEcCCCCcCC
Q psy5323 91 NAKGDVLMFLDSHCELGT 108 (110)
Q Consensus 91 ~a~g~~i~flD~d~~~~~ 108 (110)
+|+|+|++.||||..-+|
T Consensus 86 ~a~g~fiviMDaDlsHhP 103 (238)
T KOG2978|consen 86 HATGDFIVIMDADLSHHP 103 (238)
T ss_pred hccCCeEEEEeCccCCCc
Confidence 999999999999987655
No 54
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.02 E-value=3.1e-09 Score=84.69 Aligned_cols=95 Identities=9% Similarity=0.025 Sum_probs=74.3
Q ss_pred CCCeEEEEecCCchHHHHHHHhccc-cc--cCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCC--cchHHHHH
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAE-NA--KGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKER--AGLIRARI 86 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~-~~--~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~--~G~~~arn 86 (110)
.|...++|+.++.+..|.+++.+.. .+ ...||+|+||+ |+|.+.++++.+ ++| +++++..+.+ .|.+.|.|
T Consensus 65 ~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~-~~p-~v~~vv~~~~gp~~Ka~aLN 142 (504)
T PRK14716 65 EKRIAIFVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAA-RYP-RVHLVIVPHDGPTSKADCLN 142 (504)
T ss_pred CCceEEEEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHH-HCC-CeEEEEeCCCCCCCHHHHHH
Confidence 4556788999999999999998853 32 25799999988 678888888777 787 6776554332 35899999
Q ss_pred HHHHhc------CC---CEEEEEcCCCCcCCCC
Q psy5323 87 AGAENA------KG---DVLMFLDSHCELGTNW 110 (110)
Q Consensus 87 ~G~~~a------~g---~~i~flD~d~~~~~~W 110 (110)
.|++.+ +| |+++++|||+.++|++
T Consensus 143 ~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~ 175 (504)
T PRK14716 143 WIYQAIFAFERERGIRFAIIVLHDAEDVIHPLE 175 (504)
T ss_pred HHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccH
Confidence 998764 67 9999999999998863
No 55
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.02 E-value=2.2e-09 Score=79.93 Aligned_cols=92 Identities=20% Similarity=0.220 Sum_probs=76.1
Q ss_pred CCeEEEEecCCchHHHHHHHhccccccC--CEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHH
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAENAKG--DVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAE 90 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~~~~~--~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~ 90 (110)
|....++.++++...+..|+.++..++. .++++||++ |.+.+.+.... .+ +++++.+.+|.|.+++-|.|++
T Consensus 3 ~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~---~~-~v~~i~~~~NlG~agg~n~g~~ 78 (305)
T COG1216 3 PKISIIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF---FP-NVRLIENGENLGFAGGFNRGIK 78 (305)
T ss_pred cceEEEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc---CC-cEEEEEcCCCccchhhhhHHHH
Confidence 5567888899999999999999888773 455567888 77776665421 44 7999999999999999999999
Q ss_pred hcCCC---EEEEEcCCCCcCCCC
Q psy5323 91 NAKGD---VLMFLDSHCELGTNW 110 (110)
Q Consensus 91 ~a~g~---~i~flD~d~~~~~~W 110 (110)
.|.++ |+++|+.|+.+.++|
T Consensus 79 ~a~~~~~~~~l~LN~D~~~~~~~ 101 (305)
T COG1216 79 YALAKGDDYVLLLNPDTVVEPDL 101 (305)
T ss_pred HHhcCCCcEEEEEcCCeeeChhH
Confidence 99887 999999998887765
No 56
>KOG2977|consensus
Probab=98.93 E-value=4e-09 Score=78.37 Aligned_cols=89 Identities=18% Similarity=0.198 Sum_probs=70.7
Q ss_pred CeEEEEecCCchHHHHH----HHhccccc------cCCEEEEEeCC--CCchHHHHHHHhccCC-CcEEEEEccCCcchH
Q psy5323 16 PKVRLIRLKERAGLIRA----RIAGAENA------KGDVLMFLDSH--YELQGKLDYYIQTRLP-PKVRLIRLKERAGLI 82 (110)
Q Consensus 16 ~~v~ii~~~~~~~~i~~----~l~~~~~~------~~~EiivVDD~--d~t~~~l~~~~~~~~~-~~~~~i~~~~~~G~~ 82 (110)
.+.+||+..+.++-+.+ +++.+... -.+||++|||+ |.|.+.+-.+.. ++. +++||+....|.|.+
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~-K~~~d~irV~~l~~nrgKG 146 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSR-KLGDDNIRVIKLKKNRGKG 146 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHH-HcCcceEEEeehhccCCCC
Confidence 45678887776666554 44444321 25899999999 888888888774 332 479999999999999
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCC
Q psy5323 83 RARIAGAENAKGDVLMFLDSHCE 105 (110)
Q Consensus 83 ~arn~G~~~a~g~~i~flD~d~~ 105 (110)
+|-..|+..++|+++.|.|||..
T Consensus 147 gAvR~g~l~~rG~~ilfadAdGa 169 (323)
T KOG2977|consen 147 GAVRKGMLSSRGQKILFADADGA 169 (323)
T ss_pred cceehhhHhccCceEEEEcCCCC
Confidence 99999999999999999999975
No 57
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=98.91 E-value=1.9e-09 Score=77.78 Aligned_cols=74 Identities=4% Similarity=-0.003 Sum_probs=53.3
Q ss_pred EEecCCc-hHHHHHHHhccccccC------------CEEEEEeCC-CCchHHHHHHHhccCCCcEEEEEccCCcc-hHHH
Q psy5323 20 LIRLKER-AGLIRARIAGAENAKG------------DVLMFLDSH-YELQGKLDYYIQTRLPPKVRLIRLKERAG-LIRA 84 (110)
Q Consensus 20 ii~~~~~-~~~i~~~l~~~~~~~~------------~EiivVDD~-d~t~~~l~~~~~~~~~~~~~~i~~~~~~G-~~~a 84 (110)
+|+.++. +..|.+++.|+..|+. .|||||||| .+ . +.. +. ...+ ...+
T Consensus 2 ~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d---------~-~~g-k~------~~~~~~~~~ 64 (244)
T cd04190 2 CVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK---------K-NRG-KR------DSQLWFFNY 64 (244)
T ss_pred EEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc---------c-cCc-ch------HHHHHHHHH
Confidence 5676666 4899999999876653 499999999 44 1 100 00 0000 2357
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 85 RIAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 85 rn~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
.|.|+..++|||++|+|+|+.+.++|
T Consensus 65 ~~~~~~~a~~e~i~~~DaD~~~~~~~ 90 (244)
T cd04190 65 FCRVLFPDDPEFILLVDADTKFDPDS 90 (244)
T ss_pred HHHHhhcCCCCEEEEECCCCcCCHhH
Confidence 88999999999999999999998875
No 58
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=98.73 E-value=1.2e-07 Score=78.59 Aligned_cols=93 Identities=11% Similarity=0.039 Sum_probs=73.0
Q ss_pred CCeEEEEecCCchHHHHHHHhccc-cc--cCCEEEEEeCC-CC-chHHHHHHHhccCCCcEEEEEccC--CcchHHHHHH
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAE-NA--KGDVLMFLDSH-YE-LQGKLDYYIQTRLPPKVRLIRLKE--RAGLIRARIA 87 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~-~~--~~~EiivVDD~-d~-t~~~l~~~~~~~~~~~~~~i~~~~--~~G~~~arn~ 87 (110)
|+..++++-++.++.+.+.+.++. .+ .++||++++|+ |+ |.+.++.+.+ ++| +++++..+. +.|.+.|.|.
T Consensus 63 ~~vsIlVPa~nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~nD~~T~~~~~~l~~-~~p-~~~~v~~~~~g~~gKa~aLN~ 140 (727)
T PRK11234 63 KPLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNDPATQADVDAVCA-RFP-NVHKVVCARPGPTSKADCLNN 140 (727)
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHhCCCCCeEEEEEecCCChhHHHHHHHHHH-HCC-CcEEEEeCCCCCCCHHHHHHH
Confidence 445677899999999998888753 22 35899999988 44 6788888877 787 677665554 7899999999
Q ss_pred HHHhc-------CCC--EEEEEcCCCCcCCC
Q psy5323 88 GAENA-------KGD--VLMFLDSHCELGTN 109 (110)
Q Consensus 88 G~~~a-------~g~--~i~flD~d~~~~~~ 109 (110)
|+..+ .++ +++++|||+.++|+
T Consensus 141 ~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd 171 (727)
T PRK11234 141 VLDAITQFERSANFAFAGFILHDAEDVISPM 171 (727)
T ss_pred HHHHHHhhhcccCCcccEEEEEcCCCCCChh
Confidence 99998 444 57779999999885
No 59
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=98.68 E-value=2e-07 Score=68.38 Aligned_cols=91 Identities=10% Similarity=0.043 Sum_probs=59.8
Q ss_pred EEEecCCc-hHHHHHHHhcccc----c---cCCEEEEEeCC-CCchHHHH-----HHHhccCC--CcEEEEEccCCcch-
Q psy5323 19 RLIRLKER-AGLIRARIAGAEN----A---KGDVLMFLDSH-YELQGKLD-----YYIQTRLP--PKVRLIRLKERAGL- 81 (110)
Q Consensus 19 ~ii~~~~~-~~~i~~~l~~~~~----~---~~~EiivVDD~-d~t~~~l~-----~~~~~~~~--~~~~~i~~~~~~G~- 81 (110)
++++.++. ...+.+++.+.-. + ..+||+++||+ +......+ ++.+ +++ .++++++.++|.|.
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~-~~~~~~~v~~~~r~~~~g~K 81 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCE-ELGAQGRIYYRRRRENTGRK 81 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHH-HhCCCCcEEEEEcCCCCCcc
Confidence 56675544 4446666665421 2 36899999999 55332222 2322 222 26899999888886
Q ss_pred HHHHHHHHHh--cCCCEEEEEcCCCCcCCCC
Q psy5323 82 IRARIAGAEN--AKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 82 ~~arn~G~~~--a~g~~i~flD~d~~~~~~W 110 (110)
+++.|.++.. ++++||+++|||..+.+++
T Consensus 82 ag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~ 112 (254)
T cd04191 82 AGNIADFCRRWGSRYDYMVVLDADSLMSGDT 112 (254)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCCCHHH
Confidence 5555555554 7889999999999988753
No 60
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=98.51 E-value=8.6e-07 Score=67.60 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=65.6
Q ss_pred EEEecCCchHHHHHHHhcccccc----CCEEEEEeCC-C-CchHHHHHHHhccCCCcEEEEEccC----C----------
Q psy5323 19 RLIRLKERAGLIRARIAGAENAK----GDVLMFLDSH-Y-ELQGKLDYYIQTRLPPKVRLIRLKE----R---------- 78 (110)
Q Consensus 19 ~ii~~~~~~~~i~~~l~~~~~~~----~~EiivVDD~-d-~t~~~l~~~~~~~~~~~~~~i~~~~----~---------- 78 (110)
+++..++|...++++|.++..+. ..+|+|.+|| . ++.+.+..+. ..++++.++. +
T Consensus 4 Vlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~-----~~i~~i~~~~~~~~~~~~~~~~~~y 78 (334)
T cd02514 4 VLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFG-----DGVTHIQHPPISIKNVNPPHKFQGY 78 (334)
T ss_pred EEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhc-----cccEEEEcccccccccCcccccchh
Confidence 56778899999999999988764 6899999999 3 3455554442 1466666532 2
Q ss_pred cchHH----HHHHHHHhcCCCEEEEEcCCCCcCCC
Q psy5323 79 AGLIR----ARIAGAENAKGDVLMFLDSHCELGTN 109 (110)
Q Consensus 79 ~G~~~----arn~G~~~a~g~~i~flD~d~~~~~~ 109 (110)
.+++. |+|.++..+.+++++|||.|+.++|+
T Consensus 79 ~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPd 113 (334)
T cd02514 79 YRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPD 113 (334)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHh
Confidence 23455 99999999999999999999999875
No 61
>KOG3737|consensus
Probab=98.38 E-value=4.1e-07 Score=70.71 Aligned_cols=62 Identities=39% Similarity=0.583 Sum_probs=57.6
Q ss_pred ChhhHHHHHHhhhCCCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHh
Q psy5323 1 ELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQ 63 (110)
Q Consensus 1 ~~~~~l~~~~~~~lp~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~ 63 (110)
+|+++||+|+++ +.++|+++++.+|+|+|+++-.++...++..+|++|.| +....|+.++++
T Consensus 201 hLkekLDeYv~~-fnGlVkV~Rne~REGLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlA 263 (603)
T KOG3737|consen 201 HLKEKLDEYVKL-FNGLVKVFRNERREGLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLA 263 (603)
T ss_pred HHHHHHHHHHHH-hcCEEEEEecchhhhhhhhhccchhhccccEEEEEecceeeeccccccccc
Confidence 578999999994 89999999999999999999999988899999999999 888899999987
No 62
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=98.24 E-value=1.5e-05 Score=65.96 Aligned_cols=93 Identities=10% Similarity=0.018 Sum_probs=71.3
Q ss_pred CCeEEEEecCCchHHHHHHHhccc-c--ccCCEEEEEe-CC-CCchHHHHHHHhccCCCcEEEEEccCC--cchHHHHHH
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAE-N--AKGDVLMFLD-SH-YELQGKLDYYIQTRLPPKVRLIRLKER--AGLIRARIA 87 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~-~--~~~~EiivVD-D~-d~t~~~l~~~~~~~~~~~~~~i~~~~~--~G~~~arn~ 87 (110)
|...++|+-++.+..|.+.+.++. . -..+||+++. +. .+|...++.+.. ++| ++++++.+.+ .|.+.|.|.
T Consensus 71 ~~vsIlVPa~nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~~~~~~~~-~~p-~~~~v~~~~~gp~gKa~ALN~ 148 (703)
T PRK15489 71 QPLAIMVPAWKEYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETITEVERMRR-RYK-RLVRVEVPHDGPTCKADCLNW 148 (703)
T ss_pred CceEEEEeCCCcHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHHHHHHHhc-cCC-cEEEEEcCCCCCCCHHHHHHH
Confidence 445688999999999999888853 2 2357888853 22 567788887766 677 7888776555 689999999
Q ss_pred HHHhc-------CCCE--EEEEcCCCCcCCC
Q psy5323 88 GAENA-------KGDV--LMFLDSHCELGTN 109 (110)
Q Consensus 88 G~~~a-------~g~~--i~flD~d~~~~~~ 109 (110)
|+..+ .++| ++..|||+.++|+
T Consensus 149 ~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~ 179 (703)
T PRK15489 149 IIQAIFRYEAGHGIEFAGVILHDSEDVLHPL 179 (703)
T ss_pred HHHHHHhhhhhccCccceEEEEcCCCCCChh
Confidence 99986 5555 8999999999875
No 63
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=98.24 E-value=1.4e-05 Score=66.16 Aligned_cols=92 Identities=11% Similarity=0.025 Sum_probs=60.4
Q ss_pred eEEEEecCCch-----HHHHHHHhcccccc---CCEEEEEeCC-CCchHHH-----HHHHhccCC--CcEEEEEccCCcc
Q psy5323 17 KVRLIRLKERA-----GLIRARIAGAENAK---GDVLMFLDSH-YELQGKL-----DYYIQTRLP--PKVRLIRLKERAG 80 (110)
Q Consensus 17 ~v~ii~~~~~~-----~~i~~~l~~~~~~~---~~EiivVDD~-d~t~~~l-----~~~~~~~~~--~~~~~i~~~~~~G 80 (110)
..++++.++.+ ..+++++.++..+. .+|++++||+ |+..... .++.+ +++ .++.+.+...|.|
T Consensus 126 VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~-~~~~~~~i~yr~R~~n~~ 204 (691)
T PRK05454 126 TAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRA-ELGGEGRIFYRRRRRNVG 204 (691)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHH-hcCCCCcEEEEECCcCCC
Confidence 45667765554 35777777765432 5899999999 5433222 23333 432 2677777777766
Q ss_pred -hHHHHHHHHHh--cCCCEEEEEcCCCCcCCC
Q psy5323 81 -LIRARIAGAEN--AKGDVLMFLDSHCELGTN 109 (110)
Q Consensus 81 -~~~arn~G~~~--a~g~~i~flD~d~~~~~~ 109 (110)
.++..|..++. +++||++++|||..+.++
T Consensus 205 ~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d 236 (691)
T PRK05454 205 RKAGNIADFCRRWGGAYDYMVVLDADSLMSGD 236 (691)
T ss_pred ccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHH
Confidence 45555555887 566999999999988764
No 64
>KOG3736|consensus
Probab=98.05 E-value=4.6e-06 Score=67.46 Aligned_cols=62 Identities=47% Similarity=0.743 Sum_probs=55.9
Q ss_pred hhhHHHHHHhhhCCCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHhccC
Q psy5323 2 LQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQTRL 66 (110)
Q Consensus 2 ~~~~l~~~~~~~lp~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~~~~ 66 (110)
++.+|++|+++ ++. |+++++..|+|+|++++.++...++..++++|.| +.+.+|++++++ ++
T Consensus 189 l~~~Ld~y~k~-~~~-v~i~r~~~R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~-~I 251 (578)
T KOG3736|consen 189 LKDKLEEYVKR-FSK-VRILRTKKREGLIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLA-RI 251 (578)
T ss_pred hhhhhHHHHhh-hcc-eeEEeecchhhhHHHHhhhhhhhhchheeeeecceeEecCcchHHHH-Hh
Confidence 56779999996 333 9999999999999999999999999999999999 999999999998 44
No 65
>KOG3738|consensus
Probab=97.14 E-value=0.00075 Score=52.97 Aligned_cols=52 Identities=50% Similarity=0.806 Sum_probs=46.9
Q ss_pred hCCCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHhccC
Q psy5323 13 RLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQTRL 66 (110)
Q Consensus 13 ~lp~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~~~~ 66 (110)
++| +|+++++++|+|+|+.++.++....+.-+.|+|.| +....||+++++ +.
T Consensus 177 ri~-kvr~LRN~~ReGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~-Rv 229 (559)
T KOG3738|consen 177 RIP-KVRVLRNNEREGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLE-RV 229 (559)
T ss_pred hhh-eeeeecccchhhhhhhhccccccccceEEEEEecceeecchhhHHHHH-HH
Confidence 454 88999999999999999999988888999999999 999999999998 44
No 66
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=97.10 E-value=0.0063 Score=37.61 Aligned_cols=76 Identities=22% Similarity=0.132 Sum_probs=45.1
Q ss_pred hHHHHHHHhccccccCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcc---h-HHHHHHHHHh-cCCCEEEE
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAG---L-IRARIAGAEN-AKGDVLMF 99 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G---~-~~arn~G~~~-a~g~~i~f 99 (110)
..++.+-+.-........++|+||+ |++.+++..+ + .++++....... . ...++.-.+. ..++|++|
T Consensus 4 ~~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~-----~-~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~ 77 (97)
T PF13704_consen 4 ADYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRAL-----P-GVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLF 77 (97)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhC-----C-CcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEE
Confidence 3445555544433335679999999 6787777653 3 466665433211 1 2233333333 48899999
Q ss_pred EcCCCCcCC
Q psy5323 100 LDSHCELGT 108 (110)
Q Consensus 100 lD~d~~~~~ 108 (110)
+|+|-...+
T Consensus 78 ~D~DEfl~~ 86 (97)
T PF13704_consen 78 LDADEFLVP 86 (97)
T ss_pred EeeeEEEec
Confidence 999976443
No 67
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=96.78 E-value=0.00074 Score=48.51 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=28.2
Q ss_pred EEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCCCcC
Q psy5323 70 VRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCELG 107 (110)
Q Consensus 70 ~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~~~~ 107 (110)
+.++......++++|.|.|++.|+|+|++|+.-|+...
T Consensus 31 i~i~~~~~~~s~~~~yN~a~~~a~~~ylvflHqDv~i~ 68 (217)
T PF13712_consen 31 IEIDNVRNAKSMAAAYNEAMEKAKAKYLVFLHQDVFII 68 (217)
T ss_dssp EEEE-SSS-S-TTTHHHHHGGG--SSEEEEEETTEE-S
T ss_pred EEEeccCCCcCHHHHHHHHHHhCCCCEEEEEeCCeEEc
Confidence 56666666689999999999999999999999998764
No 68
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=96.02 E-value=0.034 Score=41.77 Aligned_cols=65 Identities=18% Similarity=0.342 Sum_probs=47.1
Q ss_pred cCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcc---hHHHHHHHHHhcC----CCEEEEEcCCCCcC
Q psy5323 41 KGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAG---LIRARIAGAENAK----GDVLMFLDSHCELG 107 (110)
Q Consensus 41 ~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G---~~~arn~G~~~a~----g~~i~flD~d~~~~ 107 (110)
.+.++|+++.++.....+..++. ..+ ++-++.-....- .+.-+|.|+.-|. ..++.|||.||..+
T Consensus 37 ~~~~vi~~~~~~~~d~~i~~~i~-~~~-~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S 108 (346)
T COG4092 37 DITMVICLRAHEVMDRLIRSYID-PMP-RVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGS 108 (346)
T ss_pred ccEEEEEEecchhHHHHHHHHhc-ccc-ceEEEecCCCccccchhhhhhccchhhhccccccEEEEEecccccc
Confidence 36899999888544466777877 555 666665332222 2567899998887 99999999999876
No 69
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=95.42 E-value=0.02 Score=39.62 Aligned_cols=39 Identities=26% Similarity=0.289 Sum_probs=30.4
Q ss_pred EEEccCCcc---hHHHHHHHHHh-cCCCEEEEEcCCCCcCCCC
Q psy5323 72 LIRLKERAG---LIRARIAGAEN-AKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 72 ~i~~~~~~G---~~~arn~G~~~-a~g~~i~flD~d~~~~~~W 110 (110)
++......| .......|++. |+.|+++|+|||+.++++|
T Consensus 6 lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~ 48 (175)
T PF13506_consen 6 LVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDY 48 (175)
T ss_pred EEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHH
Confidence 444444333 66777888898 9999999999999998876
No 70
>KOG2547|consensus
Probab=94.44 E-value=0.38 Score=37.73 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=51.9
Q ss_pred CCEEEEE-eCC-CCchHHHHHHHhccCCC-cEEEEEccCCcchHHHHH---HHHHhcCCCEEEEEcCCCCcCCC
Q psy5323 42 GDVLMFL-DSH-YELQGKLDYYIQTRLPP-KVRLIRLKERAGLIRARI---AGAENAKGDVLMFLDSHCELGTN 109 (110)
Q Consensus 42 ~~EiivV-DD~-d~t~~~l~~~~~~~~~~-~~~~i~~~~~~G~~~arn---~G~~~a~g~~i~flD~d~~~~~~ 109 (110)
.+|++++ +|. |...+.++++++ ++|. ..|++--.+..|+..--| -|.+.|+=|+|.|.|++....+|
T Consensus 114 ~~ElLfcv~s~eDpAi~vv~~Ll~-kyp~VdAklf~gG~~vg~npKInN~mpgy~~a~ydlvlisDsgI~m~pd 186 (431)
T KOG2547|consen 114 KYELLFCVESSEDPAIEVVERLLK-KYPNVDAKLFFGGEKVGLNPKINNMMPGYRAAKYDLVLISDSGIFMKPD 186 (431)
T ss_pred ceEEEEEEccCCCcHHHHHHHHHh-hCCCcceEEEEcccccccChhhhccCHHHHHhcCCEEEEecCCeeecCc
Confidence 5787665 555 778899999999 8872 347777667777665555 59999999999999999987765
No 71
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=93.90 E-value=0.94 Score=32.98 Aligned_cols=89 Identities=10% Similarity=0.010 Sum_probs=49.9
Q ss_pred eEEEEecCCchHH---HHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCC--------cchHHHH
Q psy5323 17 KVRLIRLKERAGL---IRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKER--------AGLIRAR 85 (110)
Q Consensus 17 ~v~ii~~~~~~~~---i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~--------~G~~~ar 85 (110)
++.|.+++.|..- +.+-...+..-.+.-.|||+|+.........++. +..-..+.+..+.+ .| ..-|
T Consensus 3 i~vVTPTy~R~~Q~~~LtRLa~TL~lVp~l~WIVVEd~~~~t~~va~lL~-~sgl~y~HL~~~~~~~~~~~~~rg-~~qR 80 (223)
T cd00218 3 IYVVTPTYARPVQKAELTRLAHTLRLVPPLHWIVVEDSEEKTPLVAELLR-RSGLMYTHLNAKTPSDPTWLKPRG-VEQR 80 (223)
T ss_pred EEEECCCCccchhhHHHHHHHHHHhcCCceEEEEEeCCCCCCHHHHHHHH-HcCCceEEeccCCCCCcccCCccc-HHHH
Confidence 4455556654322 2222222333346778999999433344455565 44323444433322 45 4569
Q ss_pred HHHHHhcCC-------CEEEEEcCCCCcC
Q psy5323 86 IAGAENAKG-------DVLMFLDSHCELG 107 (110)
Q Consensus 86 n~G~~~a~g-------~~i~flD~d~~~~ 107 (110)
|.|++..+. -++.|.|.|-.++
T Consensus 81 n~AL~~ir~~~~~~~~GVVyFADDdN~Ys 109 (223)
T cd00218 81 NLALRWIREHLSAKLDGVVYFADDDNTYD 109 (223)
T ss_pred HHHHHHHHhccccCcceEEEEccCCCccc
Confidence 999987743 3799999887654
No 72
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=93.23 E-value=1.4 Score=30.29 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=48.3
Q ss_pred CchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHhccCCCcEEEEEccC-CcchHHHHHHHHHhc---CCCEEEE
Q psy5323 25 ERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQTRLPPKVRLIRLKE-RAGLIRARIAGAENA---KGDVLMF 99 (110)
Q Consensus 25 ~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~~~~~~~~~~i~~~~-~~G~~~arn~G~~~a---~g~~i~f 99 (110)
....++...+.........+++||-.. .....++..... ... ++.++.++. ..|.+.+.-.|++.+ ..+++.+
T Consensus 24 ~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~G~~~si~~gl~~~~~~~~d~vlv 101 (190)
T TIGR03202 24 GETTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLL-ADE-RIMLVCCRDACEGQAHSLKCGLRKAEAMGADAVVI 101 (190)
T ss_pred CCccHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhh-cCC-CeEEEECCChhhhHHHHHHHHHHHhccCCCCeEEE
Confidence 345667766655433345677877654 322233332221 112 356554333 358889999999976 4789999
Q ss_pred EcCCCCc
Q psy5323 100 LDSHCEL 106 (110)
Q Consensus 100 lD~d~~~ 106 (110)
+++|..+
T Consensus 102 ~~~D~P~ 108 (190)
T TIGR03202 102 LLADQPF 108 (190)
T ss_pred EeCCCCC
Confidence 9999864
No 73
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=93.21 E-value=0.59 Score=34.93 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=56.6
Q ss_pred eEEEEecCCchHHHHHHHhcccccc-C---CEE-EEEeCC---CCchHHHHHHHhc---------cCCCcEEEEEccC--
Q psy5323 17 KVRLIRLKERAGLIRARIAGAENAK-G---DVL-MFLDSH---YELQGKLDYYIQT---------RLPPKVRLIRLKE-- 77 (110)
Q Consensus 17 ~v~ii~~~~~~~~i~~~l~~~~~~~-~---~Ei-ivVDD~---d~t~~~l~~~~~~---------~~~~~~~~i~~~~-- 77 (110)
..++++..+.+.++..-+..+...+ + ..| .+|.|. +.+.+.++.++.+ ++. ++.+++.+-
T Consensus 27 VLILtplrna~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~-~itIl~~df~~ 105 (269)
T PF03452_consen 27 VLILTPLRNAASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFR-SITILRKDFGQ 105 (269)
T ss_pred EEEEEecCCchHHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcc-eEEEEcCCCcc
Confidence 4456667677777777666655443 2 334 344555 4455666655431 122 466665422
Q ss_pred ------------------CcchHHHHHHHHHhcCC---CEEEEEcCCCCcCC
Q psy5323 78 ------------------RAGLIRARIAGAENAKG---DVLMFLDSHCELGT 108 (110)
Q Consensus 78 ------------------~~G~~~arn~G~~~a~g---~~i~flD~d~~~~~ 108 (110)
+.-++.|||.-+-.+=+ +|+.++|+|..-+|
T Consensus 106 ~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P 157 (269)
T PF03452_consen 106 QLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETP 157 (269)
T ss_pred cccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCC
Confidence 23478899998888866 79999999998654
No 74
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=92.71 E-value=0.15 Score=39.27 Aligned_cols=42 Identities=29% Similarity=0.508 Sum_probs=36.4
Q ss_pred cEEEEE--ccCCcchHHHHHHHHHhcCCC-EEEEEcCCCCcCCCC
Q psy5323 69 KVRLIR--LKERAGLIRARIAGAENAKGD-VLMFLDSHCELGTNW 110 (110)
Q Consensus 69 ~~~~i~--~~~~~G~~~arn~G~~~a~g~-~i~flD~d~~~~~~W 110 (110)
.|++++ .....|...||+.+-+.-+|| |.+-+|||+.+.++|
T Consensus 89 ~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~W 133 (343)
T PF11397_consen 89 QIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGW 133 (343)
T ss_pred eEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccH
Confidence 455554 556789999999999999987 899999999999999
No 75
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=92.48 E-value=0.37 Score=36.98 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=67.3
Q ss_pred eEEEEecCCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHhccCCCcEEEEE-------c---cCCcchHHHH
Q psy5323 17 KVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQTRLPPKVRLIR-------L---KERAGLIRAR 85 (110)
Q Consensus 17 ~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~~~~~~~~~~i~-------~---~~~~G~~~ar 85 (110)
..-.+|..+...++++++.|+......=||..+|| |+|.+++.++.. ++|..+.+.. + ..| -+..=.
T Consensus 89 ~~~~iRvKnE~~tl~~si~S~Lpai~~gVI~yNdc~D~t~Eiil~fck-kyP~fip~~Ypy~v~~~n~~~~~n-~l~~YY 166 (347)
T PF06306_consen 89 PWAFIRVKNEAMTLAESIESILPAIDEGVIGYNDCTDGTEEIILEFCK-KYPSFIPIKYPYEVIIKNPKSEEN-SLYNYY 166 (347)
T ss_pred cceEEEEcchhhhHHHHHHHHHHHHhccEEEeecCCCCHHHHHHHHHH-hCcccccccCcchhhccCCchhhh-hhhhhh
Confidence 34667888888999999999876655668889999 999999999988 8885554422 1 112 255667
Q ss_pred HHHHHhc-CCCEEEEEcCCCCcC
Q psy5323 86 IAGAENA-KGDVLMFLDSHCELG 107 (110)
Q Consensus 86 n~G~~~a-~g~~i~flD~d~~~~ 107 (110)
|.++... +.+|++=+|+|-.+.
T Consensus 167 Ny~ls~ipk~~w~iKID~DhIy~ 189 (347)
T PF06306_consen 167 NYVLSFIPKNEWAIKIDADHIYD 189 (347)
T ss_pred hhhhcccccceEEEEeccceeec
Confidence 7787774 689999999997654
No 76
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=92.28 E-value=0.12 Score=39.65 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 81 LIRARIAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 81 ~~~arn~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
-.+.||.|.-.|+-+|++|+|.||.++.++
T Consensus 79 ~~a~R~fGyL~s~~~yivsiDDD~~P~~D~ 108 (348)
T PF03214_consen 79 GDACRNFGYLVSKKDYIVSIDDDCLPAKDD 108 (348)
T ss_pred ccchhhhHhhhcccceEEEEccccccccCC
Confidence 356899999999999999999999988764
No 77
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=92.18 E-value=2 Score=30.77 Aligned_cols=77 Identities=18% Similarity=0.246 Sum_probs=54.1
Q ss_pred CchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccC-CcchHHHHHHHHHhcCCC--EEEEEc
Q psy5323 25 ERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKE-RAGLIRARIAGAENAKGD--VLMFLD 101 (110)
Q Consensus 25 ~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~-~~G~~~arn~G~~~a~g~--~i~flD 101 (110)
+...++..++..+......++|+|--+. ..+....+.. .. .++++.|+. ..|++.+.-.|++.+.++ .++++=
T Consensus 29 ~g~plv~~~~~~a~~a~~~~vivV~g~~-~~~~~~a~~~-~~--~~~~v~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~l 104 (199)
T COG2068 29 DGKPLVRASAETALSAGLDRVIVVTGHR-VAEAVEALLA-QL--GVTVVVNPDYAQGLSTSLKAGLRAADAEGDGVVLML 104 (199)
T ss_pred CCCcHHHHHHHHHHhcCCCeEEEEeCcc-hhhHHHhhhc-cC--CeEEEeCcchhhhHhHHHHHHHHhcccCCCeEEEEe
Confidence 3445566666655555678999998775 2233333433 33 488887754 789999999999999988 888887
Q ss_pred CCCC
Q psy5323 102 SHCE 105 (110)
Q Consensus 102 ~d~~ 105 (110)
+|..
T Consensus 105 gDmP 108 (199)
T COG2068 105 GDMP 108 (199)
T ss_pred CCCC
Confidence 8865
No 78
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=91.56 E-value=1.2 Score=31.08 Aligned_cols=85 Identities=7% Similarity=0.037 Sum_probs=52.9
Q ss_pred EecCCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhc-cCCCcEEEEEcc-CCcchHHHHHHHHHhcCCCEEE
Q psy5323 21 IRLKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQT-RLPPKVRLIRLK-ERAGLIRARIAGAENAKGDVLM 98 (110)
Q Consensus 21 i~~~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~-~~~~~~~~i~~~-~~~G~~~arn~G~~~a~g~~i~ 98 (110)
++..++ .++...++.+......+|+++-... .+.+..++.. ..+..+.+.... +..|.+.|...+......+.++
T Consensus 25 lpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~--~~~i~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~l 101 (221)
T cd06422 25 VPVAGK-PLIDHALDRLAAAGIRRIVVNTHHL--ADQIEAHLGDSRFGLRITISDEPDELLETGGGIKKALPLLGDEPFL 101 (221)
T ss_pred eeECCE-EHHHHHHHHHHHCCCCEEEEEccCC--HHHHHHHHhcccCCceEEEecCCCcccccHHHHHHHHHhcCCCCEE
Confidence 444555 7888888887766566777765541 1222333321 122124444443 4568899999999887668888
Q ss_pred EEcCCCCcCC
Q psy5323 99 FLDSHCELGT 108 (110)
Q Consensus 99 flD~d~~~~~ 108 (110)
++.+|..+..
T Consensus 102 v~~~D~i~~~ 111 (221)
T cd06422 102 VVNGDILWDG 111 (221)
T ss_pred EEeCCeeeCC
Confidence 9999987654
No 79
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=91.36 E-value=1.2 Score=30.76 Aligned_cols=82 Identities=10% Similarity=0.112 Sum_probs=52.7
Q ss_pred CCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhcc--CCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEc
Q psy5323 24 KERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTR--LPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLD 101 (110)
Q Consensus 24 ~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~--~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD 101 (110)
.++ .++...++.+......+++++-... ...+..++... ....+.++..+...|.+.|...+......+.++++.
T Consensus 27 ~g~-pli~~~l~~l~~~g~~~i~vv~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~~lv~~ 103 (217)
T cd04181 27 AGK-PILEYIIERLARAGIDEIILVVGYL--GEQIEEYFGDGSKFGVNIEYVVQEEPLGTAGAVRNAEDFLGDDDFLVVN 103 (217)
T ss_pred CCe-eHHHHHHHHHHHCCCCEEEEEeccC--HHHHHHHHcChhhcCceEEEEeCCCCCccHHHHHHhhhhcCCCCEEEEE
Confidence 444 6777777776655456777775551 12233333311 112466666666679999999999888778899999
Q ss_pred CCCCcCC
Q psy5323 102 SHCELGT 108 (110)
Q Consensus 102 ~d~~~~~ 108 (110)
+|..+..
T Consensus 104 ~D~~~~~ 110 (217)
T cd04181 104 GDVLTDL 110 (217)
T ss_pred CCeecCc
Confidence 9986543
No 80
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=90.52 E-value=0.17 Score=38.85 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 82 IRARIAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 82 ~~arn~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
.+.||.|.-.+.-+|++++|.||.++.+|
T Consensus 82 ~a~R~fGyL~s~~~yivsiDDD~~Pa~d~ 110 (346)
T PLN03180 82 SACRCFGYLVSKKKYIFTIDDDCFVAKDP 110 (346)
T ss_pred ccchhhhheeecceEEEEECCCCCCCCCC
Confidence 56799999999999999999999999886
No 81
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=88.82 E-value=3.1 Score=28.65 Aligned_cols=77 Identities=9% Similarity=0.022 Sum_probs=49.3
Q ss_pred HHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHhcc--CCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQTR--LPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHC 104 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~~~--~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~ 104 (110)
.++...+..+......+|+++-+. .. .+..++... ....+.+.......|.+.+.-.+.+...++.++++.+|.
T Consensus 30 pli~~~l~~l~~~g~~~v~vv~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~~~~~lv~~~D~ 106 (223)
T cd06915 30 PFLEYLLEYLARQGISRIVLSVGYLAE---QIEEYFGDGYRGGIRIYYVIEPEPLGTGGAIKNALPKLPEDQFLVLNGDT 106 (223)
T ss_pred chHHHHHHHHHHCCCCEEEEEcccCHH---HHHHHHcCccccCceEEEEECCCCCcchHHHHHHHhhcCCCCEEEEECCc
Confidence 667777776655544677777665 22 222333311 121344555566789999999999888778899999998
Q ss_pred CcC
Q psy5323 105 ELG 107 (110)
Q Consensus 105 ~~~ 107 (110)
.+.
T Consensus 107 ~~~ 109 (223)
T cd06915 107 YFD 109 (223)
T ss_pred ccC
Confidence 653
No 82
>KOG1476|consensus
Probab=88.78 E-value=5.1 Score=30.75 Aligned_cols=89 Identities=9% Similarity=-0.005 Sum_probs=52.1
Q ss_pred eEEEEecCCchHH---HHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcch-----HHHHHHH
Q psy5323 17 KVRLIRLKERAGL---IRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGL-----IRARIAG 88 (110)
Q Consensus 17 ~v~ii~~~~~~~~---i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~-----~~arn~G 88 (110)
.+.|.+++.|..- +.+-...+..-.+.-.|+|+|++.+.......++ +..-..+.+..+...|- -.-||.+
T Consensus 89 iivVTPTY~R~~q~~~LtRlanTL~~V~nLhWIVVEd~~~~~p~v~~~L~-rtgl~ythl~~~t~~~~~~~rg~~qRn~a 167 (330)
T KOG1476|consen 89 IIVVTPTYVRPVQAAELTRLANTLRLVPNLHWIVVEDGEGTTPEVSGILR-RTGLPYTHLVHKTPMGYKARRGWEQRNMA 167 (330)
T ss_pred EEEEcccccchhHHHHHHHHHHHHhhcCCeeEEEEecCCCCCHHHHHHHH-HcCCceEEEeccCCCCCccccchhHHHHH
Confidence 4455557766422 2222222333346778999999444444445555 44323566666665553 3569999
Q ss_pred HHhcC---------CCEEEEEcCCCCc
Q psy5323 89 AENAK---------GDVLMFLDSHCEL 106 (110)
Q Consensus 89 ~~~a~---------g~~i~flD~d~~~ 106 (110)
++..+ .-++.|-|.|-.+
T Consensus 168 L~~ir~~~~~~~~~~GVVyFADDdN~Y 194 (330)
T KOG1476|consen 168 LRWIRSRILRHHKLEGVVYFADDDNTY 194 (330)
T ss_pred HHHHHHhcccccccceEEEEccCCcch
Confidence 88766 3378888888654
No 83
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=88.17 E-value=6.9 Score=27.23 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=49.8
Q ss_pred hHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC--CCEEEEEcCCC
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSHC 104 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~--g~~i~flD~d~ 104 (110)
..++...+..+......++++|-..+ .+.+..++. .. +++++..+...|.+.|.-.|..... .+.++++++|.
T Consensus 26 kpli~~~i~~l~~~~i~~i~iv~~~~--~~~i~~~~~-~~--~~~~~~~~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~ 100 (229)
T cd02540 26 KPMLEHVLDAARALGPDRIVVVVGHG--AEQVKKALA-NP--NVEFVLQEEQLGTGHAVKQALPALKDFEGDVLVLYGDV 100 (229)
T ss_pred ccHHHHHHHHHHhCCCCeEEEEECCC--HHHHHHHhC-CC--CcEEEECCCCCCCHHHHHHHHHhhccCCCeEEEEeCCc
Confidence 36777777776555446766654332 233444444 32 4677777777899999999988765 68899999997
Q ss_pred C
Q psy5323 105 E 105 (110)
Q Consensus 105 ~ 105 (110)
.
T Consensus 101 p 101 (229)
T cd02540 101 P 101 (229)
T ss_pred c
Confidence 4
No 84
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=88.10 E-value=1.5 Score=32.07 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=47.7
Q ss_pred CchHHHHH-HHhcccccc--CCE-EEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHH---HHhcCCC
Q psy5323 25 ERAGLIRA-RIAGAENAK--GDV-LMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAG---AENAKGD 95 (110)
Q Consensus 25 ~~~~~i~~-~l~~~~~~~--~~E-iivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G---~~~a~g~ 95 (110)
+|-.++++ ||.|+..|| ++. +|++|+. +...+.|..+.+ .+| .++++..+... ...+.... .....++
T Consensus 38 ~R~~lFe~~~LpSl~~QTd~dF~~lv~~~~~~P~~~~~rL~~l~~-~~p-~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~ 114 (234)
T PF11316_consen 38 ERFALFETYCLPSLRAQTDQDFTWLVLFDDDLPEPYRERLRDLLA-DYP-QFRIVFRPPGP-HRDAMRRAINAARRDGAD 114 (234)
T ss_pred HHHHHHHHHHhhHHHhccCCCeEEEEEECCCCCHHHHHHHHHHhc-cCC-CcEEEecCCch-HHHHHHHHHhhhccCCCC
Confidence 33344544 688888887 354 4556776 445678888888 777 67776655432 33333333 2223445
Q ss_pred E--EEEEcCCCCcCC
Q psy5323 96 V--LMFLDSHCELGT 108 (110)
Q Consensus 96 ~--i~flD~d~~~~~ 108 (110)
+ .+-||+|+.++.
T Consensus 115 ~~~~~RLDdDDAl~~ 129 (234)
T PF11316_consen 115 PVLQFRLDDDDALHR 129 (234)
T ss_pred EEEEEEECCcchhhH
Confidence 3 344799988764
No 85
>PLN02893 Cellulose synthase-like protein
Probab=87.90 E-value=1.1 Score=37.97 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=34.8
Q ss_pred cCCCcEEEEEccCC-----cchHHHHHHHHHh----cCCCEEEEEcCCCCc
Q psy5323 65 RLPPKVRLIRLKER-----AGLIRARIAGAEN----AKGDVLMFLDSHCEL 106 (110)
Q Consensus 65 ~~~~~~~~i~~~~~-----~G~~~arn~G~~~----a~g~~i~flD~d~~~ 106 (110)
..| .+.++..++| .-.++|.|.+++. +.|++|+.+|+|-.+
T Consensus 262 ~lP-~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~ 311 (734)
T PLN02893 262 TMP-NLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYS 311 (734)
T ss_pred cCC-ceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCC
Confidence 456 7888888877 3489999999996 789999999999885
No 86
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=87.42 E-value=5 Score=26.40 Aligned_cols=72 Identities=13% Similarity=0.229 Sum_probs=48.0
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEcc-CCcchHHHHHHHHHhc-CCCEEEEEcCCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLK-ERAGLIRARIAGAENA-KGDVLMFLDSHCE 105 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~-~~~G~~~arn~G~~~a-~g~~i~flD~d~~ 105 (110)
.++...+..+......+|+++-.. +.+...+. +. +++++.++ ...|...+.-.|+... ..+++.++-+|..
T Consensus 25 ~li~~~l~~l~~~~~~~Ivvv~~~----~~~~~~~~-~~--~~~~v~~~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p 97 (160)
T PF12804_consen 25 PLIERVLEALREAGVDDIVVVTGE----EEIYEYLE-RY--GIKVVVDPEPGQGPLASLLAALSQLPSSEPVLVLPCDQP 97 (160)
T ss_dssp EHHHHHHHHHHHHTESEEEEEEST----HHHHHHHT-TT--TSEEEE-STSSCSHHHHHHHHHHTSTTSSEEEEEETTET
T ss_pred cHHHHHHHHhhccCCceEEEecCh----HHHHHHHh-cc--CceEEEeccccCChHHHHHHHHHhcccCCCcEEEeCCcc
Confidence 455555555543334677777433 22333333 33 47887765 3689999999999999 9999999999985
Q ss_pred c
Q psy5323 106 L 106 (110)
Q Consensus 106 ~ 106 (110)
+
T Consensus 98 ~ 98 (160)
T PF12804_consen 98 F 98 (160)
T ss_dssp T
T ss_pred c
Confidence 4
No 87
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=86.78 E-value=2.8 Score=30.74 Aligned_cols=49 Identities=59% Similarity=0.855 Sum_probs=39.2
Q ss_pred CCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHh
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQ 63 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~ 63 (110)
++.++++++....|+..++..++....+.-|+++|+. .-..+|++.++.
T Consensus 57 ~~~v~vi~~~~n~G~~~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~ 106 (299)
T cd02510 57 LPKVKVLRLKKREGLIRARIAGARAATGDVLVFLDSHCEVNVGWLEPLLA 106 (299)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHccCCEEEEEeCCcccCccHHHHHHH
Confidence 4468888888888999999888888888889999988 556677776664
No 88
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=86.66 E-value=10 Score=29.81 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=47.6
Q ss_pred CeEEEEe-cCCchHHHHHHHhccccccCCEEEEEeCC--C--Cc----hHHHHHHHhccCCCcEEEEEccC---------
Q psy5323 16 PKVRLIR-LKERAGLIRARIAGAENAKGDVLMFLDSH--Y--EL----QGKLDYYIQTRLPPKVRLIRLKE--------- 77 (110)
Q Consensus 16 ~~v~ii~-~~~~~~~i~~~l~~~~~~~~~EiivVDD~--d--~t----~~~l~~~~~~~~~~~~~~i~~~~--------- 77 (110)
+..++|+ -+++..++.-.|+++... .-||+|-.. . +. .+.+..+.. -....+-++++..
T Consensus 52 ~mAIVVP~KdE~l~lleGVL~gIPh~--c~iIvVSNS~r~~~d~f~~E~dlv~~f~~-~t~r~~i~vHQkDp~la~Af~~ 128 (393)
T PRK14503 52 RMAIVVPVKNERLKLLEGVLKGIPHE--CPIIVVSNSKREPPDRFKLEVDLVRHFYR-LTQRPIIIVHQKDPGLAEALKE 128 (393)
T ss_pred CcEEEEEcCCCchhHHhhHhhcCCCC--CeEEEEeCCCCCCchHHHHHHHHHHHHHh-hhcCceEEEEcCCHHHHHHHHH
Confidence 3667777 456777888888777433 445666555 1 11 122222222 1111244444321
Q ss_pred -------------CcchHHHHHHHHHhc---CCCEEEEEcCCCCc
Q psy5323 78 -------------RAGLIRARIAGAENA---KGDVLMFLDSHCEL 106 (110)
Q Consensus 78 -------------~~G~~~arn~G~~~a---~g~~i~flD~d~~~ 106 (110)
+.|.+.+...|+-.| .-+||-|+|||-.+
T Consensus 129 aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyi 173 (393)
T PRK14503 129 AGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYI 173 (393)
T ss_pred cCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCC
Confidence 224555555565444 56899999999764
No 89
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=85.95 E-value=1.2 Score=32.71 Aligned_cols=79 Identities=8% Similarity=0.138 Sum_probs=56.7
Q ss_pred hHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccC--CcchHHHHHHHHHhcCCCEEEEEcCCC
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKE--RAGLIRARIAGAENAKGDVLMFLDSHC 104 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~--~~G~~~arn~G~~~a~g~~i~flD~d~ 104 (110)
..++.+.+..+......|+++|-.+ -....++.++. +++...++++|+. +.+.+.+.-.|.+.++++ ++.++||.
T Consensus 31 r~ii~~~i~~L~~~gi~e~vvV~~g-~~~~lve~~l~-~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~~~-fii~~sD~ 107 (239)
T COG1213 31 REIIYRTIENLAKAGITEFVVVTNG-YRADLVEEFLK-KYPFNAKIVINSDYEKTNTGYSLLLAKDYMDGR-FILVMSDH 107 (239)
T ss_pred eEeHHHHHHHHHHcCCceEEEEecc-chHHHHHHHHh-cCCcceEEEeCCCcccCCceeEEeeehhhhcCc-EEEEeCCE
Confidence 3466677777777778899999655 11235666777 7776688888643 444577888899999999 67788888
Q ss_pred CcCC
Q psy5323 105 ELGT 108 (110)
Q Consensus 105 ~~~~ 108 (110)
.+++
T Consensus 108 vye~ 111 (239)
T COG1213 108 VYEP 111 (239)
T ss_pred eecH
Confidence 7765
No 90
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=85.74 E-value=12 Score=29.23 Aligned_cols=88 Identities=14% Similarity=0.203 Sum_probs=47.2
Q ss_pred CeEEEEe-cCCchHHHHHHHhccccccCCEEEEEeCC--C--Cc----hHHHHHHHhccCCCcEEEEEccC---------
Q psy5323 16 PKVRLIR-LKERAGLIRARIAGAENAKGDVLMFLDSH--Y--EL----QGKLDYYIQTRLPPKVRLIRLKE--------- 77 (110)
Q Consensus 16 ~~v~ii~-~~~~~~~i~~~l~~~~~~~~~EiivVDD~--d--~t----~~~l~~~~~~~~~~~~~~i~~~~--------- 77 (110)
+..++|+ -+++..++...|+++... .-||+|-.. . +. .+.+..+.. -...++-++++..
T Consensus 51 ~maIVVP~KdE~l~lleGVL~gIPh~--c~iIvVSNS~r~~~d~f~~E~d~~~~f~~-~t~r~~i~vHQkDp~la~Af~~ 127 (381)
T TIGR02460 51 KTAIVVPVKNEKLHLLEGVLSGIPHE--CPIIIVSNSKREPPDRFKMEVDLIRHFSN-LTHRKIIIIHQKDPALAEAFKE 127 (381)
T ss_pred CcEEEEEcCCCchhHHhhHhhcCCCC--CeEEEEeCCCCCChhHHHHHHHHHHHHHH-hhcCceEEEEcCCHHHHHHHHH
Confidence 3567777 456677777777776433 445666555 1 11 112222221 1111244444321
Q ss_pred -------------CcchHHHHHHHHHhc---CCCEEEEEcCCCCc
Q psy5323 78 -------------RAGLIRARIAGAENA---KGDVLMFLDSHCEL 106 (110)
Q Consensus 78 -------------~~G~~~arn~G~~~a---~g~~i~flD~d~~~ 106 (110)
+.|.+.+...|+-.| .-+||-|+|||-.+
T Consensus 128 ~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyi 172 (381)
T TIGR02460 128 VGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYF 172 (381)
T ss_pred cCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCC
Confidence 235555555665444 56899999999764
No 91
>PLN02458 transferase, transferring glycosyl groups
Probab=84.69 E-value=15 Score=28.44 Aligned_cols=64 Identities=9% Similarity=0.089 Sum_probs=39.4
Q ss_pred CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCc-----chHHHHHHHHHhcCC----CEEEEEcCCCCcC
Q psy5323 42 GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERA-----GLIRARIAGAENAKG----DVLMFLDSHCELG 107 (110)
Q Consensus 42 ~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~-----G~~~arn~G~~~a~g----~~i~flD~d~~~~ 107 (110)
+.-.|||+|+..+.+ ...++. +..-..+.+..+.+. ....-||.|++..+. -++.|.|.|-.++
T Consensus 144 pL~WIVVEd~~~t~~-va~lLr-rsGl~y~HL~~k~~~~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYs 216 (346)
T PLN02458 144 PLLWIVVEGQSDSEE-VSEMLR-KTGIMYRHLVFKENFTDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYD 216 (346)
T ss_pred CceEEEEeCCCCCHH-HHHHHH-HcCCceEEeccCCCCCCccchhHHHHHHHHHHHHhcCcCceEEEccCCCccc
Confidence 567888998843333 555555 443234444333332 234569999988854 4899999887654
No 92
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=84.20 E-value=5.9 Score=26.65 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=46.5
Q ss_pred hHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEcc-CCcchHHHHHHHHHhcCCCEEEEEcCCCC
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLK-ERAGLIRARIAGAENAKGDVLMFLDSHCE 105 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~-~~~G~~~arn~G~~~a~g~~i~flD~d~~ 105 (110)
..++...+..+... ..+|++|-..+... + . .. .++++..+ ...|...+...|++....++++++.+|..
T Consensus 26 ~~ll~~~i~~l~~~-~~~iivv~~~~~~~-----~-~-~~--~~~~v~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P 95 (181)
T cd02503 26 KPLLEHVLERLKPL-VDEVVISANRDQER-----Y-A-LL--GVPVIPDEPPGKGPLAGILAALRAAPADWVLVLACDMP 95 (181)
T ss_pred EEHHHHHHHHHHhh-cCEEEEECCCChHH-----H-h-hc--CCcEeeCCCCCCCCHHHHHHHHHhcCCCeEEEEeCCcC
Confidence 45666666555433 46677765442111 1 1 22 36667654 35799999999999998999999999986
Q ss_pred c
Q psy5323 106 L 106 (110)
Q Consensus 106 ~ 106 (110)
+
T Consensus 96 ~ 96 (181)
T cd02503 96 F 96 (181)
T ss_pred C
Confidence 4
No 93
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=84.19 E-value=11 Score=26.56 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=45.0
Q ss_pred chHHHHHHHhcccccc-CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCC
Q psy5323 26 RAGLIRARIAGAENAK-GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHC 104 (110)
Q Consensus 26 ~~~~i~~~l~~~~~~~-~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~ 104 (110)
...++..++..+.... ..+++++-+.+.-...+..+.. .. .++++..+...+++ +-..+++....++++++++|.
T Consensus 23 Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~-~~--~v~~v~~~~~~~l~-~~~~~~~~~~~d~vli~~~D~ 98 (233)
T cd02518 23 GKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAK-KL--GVKVFRGSEEDVLG-RYYQAAEEYNADVVVRITGDC 98 (233)
T ss_pred CccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHH-Hc--CCeEEECCchhHHH-HHHHHHHHcCCCEEEEeCCCC
Confidence 3466776666665443 4677777655211133444444 33 46777776643333 333345556679999999998
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 99 P~ 100 (233)
T cd02518 99 PL 100 (233)
T ss_pred CC
Confidence 75
No 94
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=83.79 E-value=2.4 Score=30.52 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=35.2
Q ss_pred CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCc-------ch---HHHHHHHHHhcC-------CCEEEEEcCCC
Q psy5323 42 GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERA-------GL---IRARIAGAENAK-------GDVLMFLDSHC 104 (110)
Q Consensus 42 ~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~-------G~---~~arn~G~~~a~-------g~~i~flD~d~ 104 (110)
+.-.|||+|++.+...+..+++ +..-..+.+..+... .. ...||.|++..+ .-+|.|.|.|-
T Consensus 10 ~l~WIVVEd~~~~~~~v~~lL~-~sgl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFaDDdN 88 (207)
T PF03360_consen 10 PLHWIVVEDSEETTPLVARLLR-RSGLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVYFADDDN 88 (207)
T ss_dssp SEEEEEEESSSS--HHHHHHHH-HHTSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEEE--TTS
T ss_pred ceEEEEEeCCCCCCHHHHHHHH-HcCCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEEECCCCC
Confidence 5667999999555555666666 543223333322210 11 458999998776 33789999986
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 89 tY 90 (207)
T PF03360_consen 89 TY 90 (207)
T ss_dssp EE
T ss_pred ee
Confidence 54
No 95
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=83.63 E-value=7.3 Score=26.72 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=36.7
Q ss_pred CEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC--CCEEEEEcCCCCc
Q psy5323 43 DVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSHCEL 106 (110)
Q Consensus 43 ~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~--g~~i~flD~d~~~ 106 (110)
.++++|.+.+. ...+.. .. +++++.++. .|++.+...|++.+. +++++++-+|...
T Consensus 46 ~~vvvv~~~~~----~~~~~~-~~--~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~ 103 (195)
T TIGR03552 46 GAVLVVSPDPA----LLEAAR-NL--GAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPL 103 (195)
T ss_pred CCEEEECCCHH----HHHHHH-hc--CCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCC
Confidence 56777755421 122222 22 467777655 499999999998754 4689999999763
No 96
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=83.42 E-value=20 Score=28.16 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=47.8
Q ss_pred CeEEEEe-cCCchHHHHHHHhccccccCCEEEEEeCC-C---Cc----hHHHHHHHhccCCCcEEEEEcc----------
Q psy5323 16 PKVRLIR-LKERAGLIRARIAGAENAKGDVLMFLDSH-Y---EL----QGKLDYYIQTRLPPKVRLIRLK---------- 76 (110)
Q Consensus 16 ~~v~ii~-~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d---~t----~~~l~~~~~~~~~~~~~~i~~~---------- 76 (110)
+..++|+ -+++..+++-.|+++... .-||+|-.. . +. .+.+..+.. .-...+-++++.
T Consensus 51 ~maIVVP~KnE~l~lleGVL~gIPh~--C~IIvVSNS~r~~~d~f~~E~d~l~~f~~-~t~r~~~~vHQkDp~lA~Af~~ 127 (381)
T PF09488_consen 51 KMAIVVPCKNEKLKLLEGVLSGIPHD--CLIIVVSNSSREPVDRFKMEVDLLKHFCR-LTRRQIIIVHQKDPGLAEAFKE 127 (381)
T ss_dssp TEEEEEEESS--HHHHHHHHHCS-TT--SEEEEEE---CSSSCHHHHHHHHHHHHHH-HCT--EEEEETT-HHHHHHHHH
T ss_pred CcEEEEECCCCchhhhhhhhhcCCCC--CeEEEEECCCCCCccHHHHHHHHHHHHHH-hhcCceEEEecCCHHHHHHHHH
Confidence 4788888 567788899999887433 567778777 2 22 223344433 222135566642
Q ss_pred ------------CCcchHHHHHHHHHhc---CCCEEEEEcCCCC
Q psy5323 77 ------------ERAGLIRARIAGAENA---KGDVLMFLDSHCE 105 (110)
Q Consensus 77 ------------~~~G~~~arn~G~~~a---~g~~i~flD~d~~ 105 (110)
-+.|.+.+...|+-.| .-+||-|+|||-.
T Consensus 128 aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNy 171 (381)
T PF09488_consen 128 AGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNY 171 (381)
T ss_dssp TT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS
T ss_pred cCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCC
Confidence 2335666666676544 6789999999965
No 97
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=82.86 E-value=14 Score=25.88 Aligned_cols=79 Identities=9% Similarity=0.241 Sum_probs=51.4
Q ss_pred cCCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccC--CcchHHHHHHHHHhcCCCEEEEE
Q psy5323 23 LKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKE--RAGLIRARIAGAENAKGDVLMFL 100 (110)
Q Consensus 23 ~~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~--~~G~~~arn~G~~~a~g~~i~fl 100 (110)
..++ .++...++.+......+|++|-... .+.+..++. ... .+.++.++. ..|.+.|...+.... ++.++++
T Consensus 26 ~~g~-~li~~~l~~l~~~gi~~i~vv~~~~--~~~~~~~~~-~~~-~~~~~~~~~~~~~g~~~s~~~~~~~~-~~~~lv~ 99 (229)
T cd02523 26 INGK-PLLERQIETLKEAGIDDIVIVTGYK--KEQIEELLK-KYP-NIKFVYNPDYAETNNIYSLYLARDFL-DEDFLLL 99 (229)
T ss_pred ECCE-EHHHHHHHHHHHCCCceEEEEeccC--HHHHHHHHh-ccC-CeEEEeCcchhhhCcHHHHHHHHHHc-CCCEEEE
Confidence 3444 7777777776655456777775541 123344443 322 577777654 578999999998888 5678889
Q ss_pred cCCCCcC
Q psy5323 101 DSHCELG 107 (110)
Q Consensus 101 D~d~~~~ 107 (110)
.+|..+.
T Consensus 100 ~~D~~~~ 106 (229)
T cd02523 100 EGDVVFD 106 (229)
T ss_pred eCCEecC
Confidence 9998654
No 98
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=81.62 E-value=13 Score=24.90 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=45.6
Q ss_pred hHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccC-CcchHHHHHHHHH-hcCCCEEEEEcCCC
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKE-RAGLIRARIAGAE-NAKGDVLMFLDSHC 104 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~-~~G~~~arn~G~~-~a~g~~i~flD~d~ 104 (110)
..++...+..+......++++|-..+. ......+.. +. ++.++..+. ..|...+...|++ ....++++++++|.
T Consensus 25 ~pll~~~i~~l~~~~~~~iivv~~~~~-~~~~~~~~~-~~--~v~~v~~~~~~~g~~~si~~~l~~~~~~~~vlv~~~D~ 100 (188)
T TIGR03310 25 KTILEHVVDNALRLFFDEVILVLGHEA-DELVALLAN-HS--NITLVHNPQYAEGQSSSIKLGLELPVQSDGYLFLLGDQ 100 (188)
T ss_pred eeHHHHHHHHHHHcCCCcEEEEeCCcH-HHHHHHhcc-CC--CeEEEECcChhcCHHHHHHHHhcCCCCCCEEEEEeCCc
Confidence 456666665554434466766644411 112232222 22 466666542 3588888888888 56678999999998
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 101 P~ 102 (188)
T TIGR03310 101 PF 102 (188)
T ss_pred CC
Confidence 53
No 99
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=80.74 E-value=15 Score=25.79 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=48.6
Q ss_pred ecCCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhcc--CCCcEEEEEccCCcchHHHHHHHHHhcC-CCEEE
Q psy5323 22 RLKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTR--LPPKVRLIRLKERAGLIRARIAGAENAK-GDVLM 98 (110)
Q Consensus 22 ~~~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~--~~~~~~~i~~~~~~G~~~arn~G~~~a~-g~~i~ 98 (110)
+..++ .++...+..+......++++|-.. ....+..++... .+..+.++......|.+.|...|..... ++++
T Consensus 27 ~i~g~-~li~~~l~~l~~~~~~~i~vv~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~sl~~a~~~i~~~~~l- 102 (236)
T cd04189 27 PVAGK-PIIQYAIEDLREAGIEDIGIVVGP--TGEEIKEALGDGSRFGVRITYILQEEPLGLAHAVLAARDFLGDEPFV- 102 (236)
T ss_pred EECCc-chHHHHHHHHHHCCCCEEEEEcCC--CHHHHHHHhcchhhcCCeEEEEECCCCCChHHHHHHHHHhcCCCCEE-
Confidence 33444 667777776655545677777554 112233333311 2223666666666788998888888765 5554
Q ss_pred EEcCCCCcCC
Q psy5323 99 FLDSHCELGT 108 (110)
Q Consensus 99 flD~d~~~~~ 108 (110)
++.+|..+..
T Consensus 103 i~~~D~~~~~ 112 (236)
T cd04189 103 VYLGDNLIQE 112 (236)
T ss_pred EEECCeecCc
Confidence 4677776543
No 100
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=80.65 E-value=7.1 Score=27.53 Aligned_cols=80 Identities=13% Similarity=0.122 Sum_probs=46.3
Q ss_pred ecCCchHHHHHHHhccccccCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEE--ccCCcchHHHHHHHHHhcCC---
Q psy5323 22 RLKERAGLIRARIAGAENAKGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIR--LKERAGLIRARIAGAENAKG--- 94 (110)
Q Consensus 22 ~~~~~~~~i~~~l~~~~~~~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~--~~~~~G~~~arn~G~~~a~g--- 94 (110)
+..++ .++...+..+..+...++++|-.. +.....+..+.. +. .+.++. .....|.+.|...+......
T Consensus 27 pv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~-~~--~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~ 102 (233)
T cd06425 27 EFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEK-KL--GIKITFSIETEPLGTAGPLALARDLLGDDDE 102 (233)
T ss_pred eECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccc-cC--CeEEEeccCCCCCccHHHHHHHHHHhccCCC
Confidence 33444 677777777766555666666554 333444443211 22 344433 44557889998888887653
Q ss_pred CEEEEEcCCCCc
Q psy5323 95 DVLMFLDSHCEL 106 (110)
Q Consensus 95 ~~i~flD~d~~~ 106 (110)
++ +.+.+|..+
T Consensus 103 ~~-lv~~~D~~~ 113 (233)
T cd06425 103 PF-FVLNSDVIC 113 (233)
T ss_pred CE-EEEeCCEee
Confidence 54 555787654
No 101
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=79.83 E-value=7 Score=31.25 Aligned_cols=90 Identities=13% Similarity=0.136 Sum_probs=47.8
Q ss_pred CCeEEEEecCCchHHHHHHHhccccc-c---CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccC---------C-
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAENA-K---GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKE---------R- 78 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~~~-~---~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~---------~- 78 (110)
|...++|..++|...++++|.++... . .+.|+|-.|| +.+.+.+..+.. .++.++++. .
T Consensus 93 ~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~y~~-----~v~~i~~~~~~~i~~~~~~~ 167 (434)
T PF03071_consen 93 PVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKSYGD-----QVTYIQHPDFSPITIPPKEK 167 (434)
T ss_dssp ----EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHGGGG-----GSEEEE-S--S-----TT-G
T ss_pred CcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHHhhh-----hheeeecCCcCCceeCcccc
Confidence 44557778899999999999997642 2 3569999999 345555555522 344444321 1
Q ss_pred -----cchHHHHHHHHHhc----CCCEEEEEcCCCCcCCC
Q psy5323 79 -----AGLIRARIAGAENA----KGDVLMFLDSHCELGTN 109 (110)
Q Consensus 79 -----~G~~~arn~G~~~a----~g~~i~flD~d~~~~~~ 109 (110)
.+++.-.-.|+... .-+.++++..|.+++|+
T Consensus 168 ~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPD 207 (434)
T PF03071_consen 168 KFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPD 207 (434)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TT
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCcc
Confidence 01222222333332 45679999999998886
No 102
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=79.60 E-value=21 Score=27.74 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=46.9
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC--CCEEEEEcCCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSHCE 105 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~--g~~i~flD~d~~ 105 (110)
.++...+..+......++++|-.... ..+..++. +.. .++++..+...|.+.+.-.++.... .+.++++++|..
T Consensus 30 pli~~~l~~l~~~g~~~iivvv~~~~--~~i~~~~~-~~~-~i~~v~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P 105 (450)
T PRK14360 30 SLVERVLDSCEELKPDRRLVIVGHQA--EEVEQSLA-HLP-GLEFVEQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVP 105 (450)
T ss_pred hHHHHHHHHHHhCCCCeEEEEECCCH--HHHHHHhc-ccC-CeEEEEeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCcc
Confidence 77777777776555556666654411 22444444 333 5777776666788888777776653 356777999974
No 103
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=78.58 E-value=13 Score=26.73 Aligned_cols=84 Identities=7% Similarity=0.073 Sum_probs=49.2
Q ss_pred EecCCchHHHHHHHhcccc-ccCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhc---CC
Q psy5323 21 IRLKERAGLIRARIAGAEN-AKGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENA---KG 94 (110)
Q Consensus 21 i~~~~~~~~i~~~l~~~~~-~~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a---~g 94 (110)
++..++ .+|...++.+.. ....+|++|-.. +.....+..... .....+.++..++..|.+.|........ ..
T Consensus 26 lpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~-~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~ 103 (257)
T cd06428 26 FPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQ-EFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNP 103 (257)
T ss_pred CeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhccc-ccCceEEEecCCccCCcHHHHHHHHHHhhccCC
Confidence 444565 788888888766 345677777554 333344433211 2222355555556678888766655543 24
Q ss_pred CEEEEEcCCCCc
Q psy5323 95 DVLMFLDSHCEL 106 (110)
Q Consensus 95 ~~i~flD~d~~~ 106 (110)
+.++++.+|..+
T Consensus 104 ~~~lv~~gD~~~ 115 (257)
T cd06428 104 SAFFVLNADVCC 115 (257)
T ss_pred CCEEEEcCCeec
Confidence 667778888764
No 104
>PLN02195 cellulose synthase A
Probab=78.52 E-value=3.6 Score=35.95 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=33.2
Q ss_pred CCCcEEEEEccCCcc-----hHHHHHHHHHhc----CCCEEEEEcCCCCcCC
Q psy5323 66 LPPKVRLIRLKERAG-----LIRARIAGAENA----KGDVLMFLDSHCELGT 108 (110)
Q Consensus 66 ~~~~~~~i~~~~~~G-----~~~arn~G~~~a----~g~~i~flD~d~~~~~ 108 (110)
.| .+.++..+++.| .++|+|..++.+ .|+||..+|+|-.+.+
T Consensus 418 lP-~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~ 468 (977)
T PLN02195 418 LP-RLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNN 468 (977)
T ss_pred Cc-eeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCc
Confidence 45 677777777776 688999999854 5999999999976543
No 105
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=77.72 E-value=2.3 Score=32.28 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=27.1
Q ss_pred chHHHHHHHHHhcCCCEEEEEcCCCCcCCC
Q psy5323 80 GLIRARIAGAENAKGDVLMFLDSHCELGTN 109 (110)
Q Consensus 80 G~~~arn~G~~~a~g~~i~flD~d~~~~~~ 109 (110)
-+..-||.+...|+.+|+..+|.|..+++|
T Consensus 114 PiN~LRNvAr~~a~T~~v~~~DvD~~ps~~ 143 (317)
T PF13896_consen 114 PINLLRNVARSGARTDYVFLLDVDFLPSPG 143 (317)
T ss_pred ChHHHHHHHHHhcCcceEEEecceeeeCcc
Confidence 367899999999999999999999988765
No 106
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=75.96 E-value=20 Score=23.76 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=45.5
Q ss_pred hHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEcc-CCcchHHHHHHHHHhcC--CCEEEEEcCC
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLK-ERAGLIRARIAGAENAK--GDVLMFLDSH 103 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~-~~~G~~~arn~G~~~a~--g~~i~flD~d 103 (110)
..++...+..+......+|++|-..+. ........ .. .+.++..+ ...|...+...|++.+. .++++++.+|
T Consensus 26 ~~li~~~i~~l~~~~~~~i~vv~~~~~--~~~~~~~~-~~--~~~~~~~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D 100 (186)
T cd04182 26 KPLLRHALDAALAAGLSRVIVVLGAEA--DAVRAALA-GL--PVVVVINPDWEEGMSSSLAAGLEALPADADAVLILLAD 100 (186)
T ss_pred eeHHHHHHHHHHhCCCCcEEEECCCcH--HHHHHHhc-CC--CeEEEeCCChhhCHHHHHHHHHHhccccCCEEEEEeCC
Confidence 456666666655443456666643311 11122222 22 35555543 33589999999999887 7999999999
Q ss_pred CCc
Q psy5323 104 CEL 106 (110)
Q Consensus 104 ~~~ 106 (110)
..+
T Consensus 101 ~P~ 103 (186)
T cd04182 101 QPL 103 (186)
T ss_pred CCC
Confidence 853
No 107
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=75.82 E-value=24 Score=24.60 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=49.0
Q ss_pred ecCCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHhccCCCcEEEE-EccCCcchHHHHHHHHHhcC-CCEEE
Q psy5323 22 RLKERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQTRLPPKVRLI-RLKERAGLIRARIAGAENAK-GDVLM 98 (110)
Q Consensus 22 ~~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~~~~~~~~~~i-~~~~~~G~~~arn~G~~~a~-g~~i~ 98 (110)
+..++ .++...+..+..+...++++|--. ......+...+..... ++.++ ..+...|.+.|.-.+..... .+.+.
T Consensus 25 ~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~g~~~~l~~a~~~l~~~~~~l 102 (231)
T cd04183 25 EVDGK-PMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLLAP-NATVVELDGETLGAACTVLLAADLIDNDDPLL 102 (231)
T ss_pred EECCE-EHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHhCC-CCEEEEeCCCCCcHHHHHHHHHhhcCCCCCEE
Confidence 44444 577777777765544567766533 2222222222220112 34433 33456789999988888764 36677
Q ss_pred EEcCCCCcCC
Q psy5323 99 FLDSHCELGT 108 (110)
Q Consensus 99 flD~d~~~~~ 108 (110)
++.+|..+..
T Consensus 103 v~~~D~i~~~ 112 (231)
T cd04183 103 IFNCDQIVES 112 (231)
T ss_pred EEecceeecc
Confidence 8899986543
No 108
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=74.62 E-value=38 Score=28.78 Aligned_cols=88 Identities=11% Similarity=0.199 Sum_probs=47.1
Q ss_pred CeEEEEe-cCCchHHHHHHHhccccccCCEEEEEeCC--C--Cc----hHHHHHHHhccCCCcEEEEEccC---------
Q psy5323 16 PKVRLIR-LKERAGLIRARIAGAENAKGDVLMFLDSH--Y--EL----QGKLDYYIQTRLPPKVRLIRLKE--------- 77 (110)
Q Consensus 16 ~~v~ii~-~~~~~~~i~~~l~~~~~~~~~EiivVDD~--d--~t----~~~l~~~~~~~~~~~~~~i~~~~--------- 77 (110)
+..++|+ -+++..+++..|+++... .-||+|-.. . +. .+.+..+.. -....+-++++..
T Consensus 56 ~~aivvp~k~e~~~~~~gvl~~ip~~--c~ii~vsns~r~~~d~~~~e~~~~~~~~~-~~~~~~~~vhq~dp~~a~a~~~ 132 (694)
T PRK14502 56 KMAIVLPIKDEDLKVFEGVLSGIPHD--CLMIVISNSSKQEVDNFKNEKDIVNRFCR-ITHRQAIVVHQKNPELANAIAD 132 (694)
T ss_pred CcEEEEEcCCCchhHHhhHhhcCCCC--CeEEEEeCCCCCchHHHHHHHHHHHHHHH-hhcCceEEEEcCCHHHHHHHHH
Confidence 3667777 456677777777776432 445666555 1 11 112222221 1111233444321
Q ss_pred -------------CcchHHHHHHHHHhc---CCCEEEEEcCCCCc
Q psy5323 78 -------------RAGLIRARIAGAENA---KGDVLMFLDSHCEL 106 (110)
Q Consensus 78 -------------~~G~~~arn~G~~~a---~g~~i~flD~d~~~ 106 (110)
+.|.+.+...|+-.| .-+||-|+|||-.+
T Consensus 133 ~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~ 177 (694)
T PRK14502 133 AGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYI 177 (694)
T ss_pred cCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCC
Confidence 235555566666554 56899999999764
No 109
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=69.84 E-value=38 Score=24.22 Aligned_cols=86 Identities=5% Similarity=-0.076 Sum_probs=48.6
Q ss_pred EEecCCchHHHHHHHhccccccCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEE---------------------Ecc
Q psy5323 20 LIRLKERAGLIRARIAGAENAKGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLI---------------------RLK 76 (110)
Q Consensus 20 ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i---------------------~~~ 76 (110)
+++..++. ++...+..+....-.||++|--+ +...+.+..... ... .+++. ...
T Consensus 23 llpv~~~p-~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (253)
T cd02524 23 MVEIGGRP-ILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFL-HNS-DVTIDLGTNRIELHNSDIEDWKVTLVDTG 99 (253)
T ss_pred EEEECCEE-HHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhh-hcC-ceeEeecccceeeecccccccceeecccC
Confidence 34556665 66666666655545677777655 233333332211 001 12221 111
Q ss_pred CCcchHHHHHHHHHhcCC-CEEEEEcCCCCcCC
Q psy5323 77 ERAGLIRARIAGAENAKG-DVLMFLDSHCELGT 108 (110)
Q Consensus 77 ~~~G~~~arn~G~~~a~g-~~i~flD~d~~~~~ 108 (110)
...|.+.|.-.+.....+ +.++++++|..+..
T Consensus 100 ~~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~ 132 (253)
T cd02524 100 LNTMTGGRLKRVRRYLGDDETFMLTYGDGVSDV 132 (253)
T ss_pred cccccHHHHHHHHHhcCCCCeEEEEcCCEEECC
Confidence 245678888888888765 78899999976543
No 110
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=68.01 E-value=35 Score=23.20 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=43.9
Q ss_pred hHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccC--CcchHHHHHHHHHhcCCCEEEEEcCCC
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKE--RAGLIRARIAGAENAKGDVLMFLDSHC 104 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~--~~G~~~arn~G~~~a~g~~i~flD~d~ 104 (110)
..++...+..+. ....+|++|-..+ . . .+ . .. .++++.... ..|...+...|++....++++++++|.
T Consensus 30 ~~ll~~~i~~l~-~~~~~i~vv~~~~-~-~---~~-~-~~--~~~~v~~~~~~~~g~~~~i~~~l~~~~~~~vlv~~~D~ 99 (193)
T PRK00317 30 KPLIQHVIERLA-PQVDEIVINANRN-L-A---RY-A-AF--GLPVIPDSLADFPGPLAGILAGLKQARTEWVLVVPCDT 99 (193)
T ss_pred EEHHHHHHHHHh-hhCCEEEEECCCC-h-H---HH-H-hc--CCcEEeCCCCCCCCCHHHHHHHHHhcCCCeEEEEcCCc
Confidence 566666666655 3346777763221 1 1 11 1 12 245554432 368888999999988889999999998
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
..
T Consensus 100 P~ 101 (193)
T PRK00317 100 PF 101 (193)
T ss_pred CC
Confidence 64
No 111
>PLN02189 cellulose synthase
Probab=66.52 E-value=12 Score=33.13 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=45.4
Q ss_pred CCEEEEEeCCC--------CchHHHHHHHhc---------cCCCcEEEEEccCCcc-----hHHHHHHHHH----hcCCC
Q psy5323 42 GDVLMFLDSHY--------ELQGKLDYYIQT---------RLPPKVRLIRLKERAG-----LIRARIAGAE----NAKGD 95 (110)
Q Consensus 42 ~~EiivVDD~d--------~t~~~l~~~~~~---------~~~~~~~~i~~~~~~G-----~~~arn~G~~----~a~g~ 95 (110)
+.|-.+.+|+. +...+++-++.. ..| .+-++..+++.| .++|.|..++ ...|+
T Consensus 456 p~~~~~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP-~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaP 534 (1040)
T PLN02189 456 PPEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELP-RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAP 534 (1040)
T ss_pred CCccceeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccc-eeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCC
Confidence 34556678871 344455444330 223 477887777777 7899999994 56899
Q ss_pred EEEEEcCCCCcCC
Q psy5323 96 VLMFLDSHCELGT 108 (110)
Q Consensus 96 ~i~flD~d~~~~~ 108 (110)
||..+|+|..+.+
T Consensus 535 fILNLDCDmY~Nn 547 (1040)
T PLN02189 535 FMLNLDCDHYINN 547 (1040)
T ss_pred eEEEccCccccCc
Confidence 9999999988653
No 112
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=64.51 E-value=14 Score=25.94 Aligned_cols=82 Identities=13% Similarity=0.166 Sum_probs=52.5
Q ss_pred CchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccC--CCcEEEEEccCCcchHHHHHHHHHhcCCCE----EE
Q psy5323 25 ERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRL--PPKVRLIRLKERAGLIRARIAGAENAKGDV----LM 98 (110)
Q Consensus 25 ~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~--~~~~~~i~~~~~~G~~~arn~G~~~a~g~~----i~ 98 (110)
++..++...+..+......++|+|--+.. ...+..++.... ..++.++..+...|.+.|.-.......++- ++
T Consensus 29 g~~pli~~~l~~l~~~g~~~ii~V~~~~~-~~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a~~~i~~~~~~~~~l 107 (248)
T PF00483_consen 29 GKYPLIDYVLENLANAGIKEIIVVVNGYK-EEQIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQALDFIEEEDDDEDFL 107 (248)
T ss_dssp TEEEHHHHHHHHHHHTTCSEEEEEEETTT-HHHHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHTHHHHTTSEE-SEEE
T ss_pred CCCcchhhhhhhhcccCCceEEEEEeecc-cccccccccccccccccceeeecccccchhHHHHHHHHHhhhccccceEE
Confidence 33356777777766666678554533211 123444444121 114788888888899999999999998876 88
Q ss_pred EEcCCCCcC
Q psy5323 99 FLDSHCELG 107 (110)
Q Consensus 99 flD~d~~~~ 107 (110)
++.+|..+.
T Consensus 108 v~~gD~i~~ 116 (248)
T PF00483_consen 108 VLNGDIIFD 116 (248)
T ss_dssp EETTEEEES
T ss_pred EEecccccc
Confidence 888886544
No 113
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=63.71 E-value=72 Score=25.25 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=47.5
Q ss_pred cCCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC---CCEEEE
Q psy5323 23 LKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK---GDVLMF 99 (110)
Q Consensus 23 ~~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~---g~~i~f 99 (110)
..++. ++...+..+......+++++-.... ..+..++. .....+.++..+...|.+.|.-.|+.... .+++++
T Consensus 29 i~gkp-li~~~l~~l~~~g~~~iivvv~~~~--~~i~~~~~-~~~~~~~~~~~~~~~Gt~~si~~al~~l~~~~~~~vlV 104 (482)
T PRK14352 29 LAGRS-MLGHVLHAAAGLAPQHLVVVVGHDR--ERVAPAVA-ELAPEVDIAVQDEQPGTGHAVQCALEALPADFDGTVVV 104 (482)
T ss_pred eCCcc-HHHHHHHHHHhcCCCcEEEEECCCH--HHHHHHhh-ccCCccEEEeCCCCCCcHHHHHHHHHHhccCCCCeEEE
Confidence 34443 7777777776554456665544411 12333333 22114556666666788888888888754 267888
Q ss_pred EcCCCC
Q psy5323 100 LDSHCE 105 (110)
Q Consensus 100 lD~d~~ 105 (110)
+++|..
T Consensus 105 ~~gD~P 110 (482)
T PRK14352 105 TAGDVP 110 (482)
T ss_pred EeCCee
Confidence 889974
No 114
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=63.24 E-value=17 Score=25.26 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=46.2
Q ss_pred chHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccC-CcchHHHHHHHHHhcCCCEEEEEcCCC
Q psy5323 26 RAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKE-RAGLIRARIAGAENAKGDVLMFLDSHC 104 (110)
Q Consensus 26 ~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~-~~G~~~arn~G~~~a~g~~i~flD~d~ 104 (110)
...++..++..+... ..+|++|--.. +....... . +++++..+. ..|...+.-.|+.....+++.++++|.
T Consensus 32 g~~ll~~~i~~l~~~-~~~ivvv~~~~---~~~~~~~~---~-~~~~i~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~ 103 (200)
T PRK02726 32 GVPLLQRVARIAAAC-ADEVYIITPWP---ERYQSLLP---P-GCHWLREPPPSQGPLVAFAQGLPQIKTEWVLLLACDL 103 (200)
T ss_pred CEeHHHHHHHHHHhh-CCEEEEECCCH---HHHHhhcc---C-CCeEecCCCCCCChHHHHHHHHHhCCCCcEEEEeCCC
Confidence 355666666655432 45666663221 11122111 1 466676443 368999999999999999999999998
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 104 P~ 105 (200)
T PRK02726 104 PR 105 (200)
T ss_pred CC
Confidence 64
No 115
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=61.33 E-value=59 Score=23.41 Aligned_cols=86 Identities=8% Similarity=0.015 Sum_probs=48.2
Q ss_pred EecCCchHHHHHHHhccccccCCEEEEEeCC--CCchHHHHHHHhccCC-------------------CcEEEEEccCCc
Q psy5323 21 IRLKERAGLIRARIAGAENAKGDVLMFLDSH--YELQGKLDYYIQTRLP-------------------PKVRLIRLKERA 79 (110)
Q Consensus 21 i~~~~~~~~i~~~l~~~~~~~~~EiivVDD~--d~t~~~l~~~~~~~~~-------------------~~~~~i~~~~~~ 79 (110)
++..+++ ++...+..+......+|++|-.+ +...+.+..+...... .++.+.......
T Consensus 25 lpv~g~p-ii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (254)
T TIGR02623 25 VEIGGKP-ILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADNTMEVHHKRVEPWRVTLVDTGEST 103 (254)
T ss_pred eEECCEE-HHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecccccccccccCCccceeeeecCCcC
Confidence 4446666 77777777665555788887654 2233333321100000 012223333446
Q ss_pred chHHHHHHHHHhcCCCEEEEEcCCCCcC
Q psy5323 80 GLIRARIAGAENAKGDVLMFLDSHCELG 107 (110)
Q Consensus 80 G~~~arn~G~~~a~g~~i~flD~d~~~~ 107 (110)
|.+.|...+......+.++++++|..+.
T Consensus 104 gt~~al~~~~~~i~~e~flv~~gD~i~~ 131 (254)
T TIGR02623 104 QTGGRLKRVREYLDDEAFCFTYGDGVAD 131 (254)
T ss_pred CcHHHHHHHHHhcCCCeEEEEeCCeEec
Confidence 8888887777776656677999997653
No 116
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=61.30 E-value=62 Score=23.70 Aligned_cols=85 Identities=15% Similarity=0.131 Sum_probs=52.7
Q ss_pred EecCCchHHHHHHHhcccccc-CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC----CC
Q psy5323 21 IRLKERAGLIRARIAGAENAK-GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK----GD 95 (110)
Q Consensus 21 i~~~~~~~~i~~~l~~~~~~~-~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~----g~ 95 (110)
++..++..++...+..+.... ..+|++|-... ....++.++....+ .+.++..+...|.+.|--.++.... .+
T Consensus 27 l~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~-~~~~v~~~l~~~~~-~~~ii~ep~~~gTa~ai~~a~~~~~~~~~~~ 104 (274)
T cd02509 27 LKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEE-YRFLVREQLPEGLP-EENIILEPEGRNTAPAIALAALYLAKRDPDA 104 (274)
T ss_pred eEcCCCCcHHHHHHHHHhcCCCCCcEEEEechH-HHHHHHHHHhhcCC-CceEEECCCCCCcHHHHHHHHHHHHhcCCCC
Confidence 444555777887777765543 45666664431 12234444441133 5777877777888888888877654 46
Q ss_pred EEEEEcCCCCcC
Q psy5323 96 VLMFLDSHCELG 107 (110)
Q Consensus 96 ~i~flD~d~~~~ 107 (110)
+++++.+|..+.
T Consensus 105 ~vlVl~~D~~i~ 116 (274)
T cd02509 105 VLLVLPSDHLIE 116 (274)
T ss_pred eEEEecchhccc
Confidence 888888886543
No 117
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=60.09 E-value=46 Score=21.75 Aligned_cols=56 Identities=27% Similarity=0.405 Sum_probs=35.7
Q ss_pred HHHHHhhhCCCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHh
Q psy5323 6 LDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQ 63 (110)
Q Consensus 6 l~~~~~~~lp~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~ 63 (110)
++.+.. +.| .+.++.+....|...+...++....+.-++++|+. .-...+++.++.
T Consensus 46 ~~~~~~-~~~-~~~~~~~~~n~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~ 102 (185)
T cd04179 46 ARELAA-RVP-RVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLE 102 (185)
T ss_pred HHHHHH-hCC-CeEEEEccCCCCccHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 444444 233 33566666666777777777766666678888887 446677776665
No 118
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=58.87 E-value=39 Score=26.22 Aligned_cols=75 Identities=15% Similarity=0.138 Sum_probs=43.9
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC--CCEEEEEcCCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSHCE 105 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~--g~~i~flD~d~~ 105 (110)
.++...+..+......+++++-.... +.+.+++. .....+.++......|.+.+...+..... .+.++++++|..
T Consensus 34 pli~~~l~~l~~~gi~~ivvv~~~~~--~~i~~~~~-~~~~~~~~~~~~~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P 110 (446)
T PRK14353 34 PMLAHVLAAAASLGPSRVAVVVGPGA--EAVAAAAA-KIAPDAEIFVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTP 110 (446)
T ss_pred hHHHHHHHHHHhCCCCcEEEEECCCH--HHHHHHhh-ccCCCceEEEcCCCCCcHHHHHHHHHHHhccCCCEEEEeCCcc
Confidence 67777777766554566666644411 22333333 22113444444556688888877877652 467788899973
No 119
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=58.61 E-value=83 Score=24.29 Aligned_cols=73 Identities=11% Similarity=0.063 Sum_probs=47.1
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC-CCEEEEEcCCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK-GDVLMFLDSHCE 105 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~-g~~i~flD~d~~ 105 (110)
.++...+..+......+++++-..+. +.+.+++. .. .++++..+...|.+.|...++.... .+.++++++|..
T Consensus 29 pli~~~l~~l~~~g~~~iiiv~~~~~--~~i~~~~~-~~--~i~~~~~~~~~G~~~ai~~a~~~l~~~~~~lv~~~D~p 102 (451)
T TIGR01173 29 PMLEHVIDAARALGPQKIHVVYGHGA--EQVRKALA-NR--DVNWVLQAEQLGTGHAVLQALPFLPDDGDVLVLYGDVP 102 (451)
T ss_pred cHHHHHHHHHHhCCCCeEEEEECCCH--HHHHHHhc-CC--CcEEEEcCCCCchHHHHHHHHHhcCCCCcEEEEECCcC
Confidence 66666777665554567666654421 22344444 33 3666665656788888888888874 478999999974
No 120
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=57.96 E-value=45 Score=22.93 Aligned_cols=77 Identities=9% Similarity=0.097 Sum_probs=43.8
Q ss_pred hHHHHHHHhcccccc-CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhc---CCCEEEEEcC
Q psy5323 27 AGLIRARIAGAENAK-GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENA---KGDVLMFLDS 102 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~-~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a---~g~~i~flD~ 102 (110)
..++...+..+.... ..+|++|-+.+.. .....+........+.++... .|...+...|++.. ..++++++++
T Consensus 28 kpll~~~i~~l~~~~~~~~ivVv~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~si~~al~~~~~~~~~~vlv~~~ 104 (218)
T cd02516 28 KPVLEHTLEAFLAHPAIDEIVVVVPPDDI-DLAKELAKYGLSKVVKIVEGG--ATRQDSVLNGLKALPDADPDIVLIHDA 104 (218)
T ss_pred eEHHHHHHHHHhcCCCCCEEEEEeChhHH-HHHHHHHhcccCCCeEEECCc--hHHHHHHHHHHHhcccCCCCEEEEccC
Confidence 466777676665433 4677776554211 111111000111135555432 36778888999876 5789999999
Q ss_pred CCCc
Q psy5323 103 HCEL 106 (110)
Q Consensus 103 d~~~ 106 (110)
|..+
T Consensus 105 D~P~ 108 (218)
T cd02516 105 ARPF 108 (218)
T ss_pred cCCC
Confidence 9764
No 121
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=57.42 E-value=28 Score=25.41 Aligned_cols=85 Identities=14% Similarity=0.161 Sum_probs=47.4
Q ss_pred EEEec-CCchHHHHHHHhcccccc-CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCCE
Q psy5323 19 RLIRL-KERAGLIRARIAGAENAK-GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDV 96 (110)
Q Consensus 19 ~ii~~-~~~~~~i~~~l~~~~~~~-~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~ 96 (110)
.++.+ ..|...+...+..+.... ..||+||=.++............. ..+++++.+.| -...|-.-......+-
T Consensus 3 vvi~t~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~--vpV~~~~~~~n--sLnnRF~p~~~i~T~A 78 (247)
T PF09258_consen 3 VVINTSYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTG--VPVRVVRSSRN--SLNNRFLPDPEIETDA 78 (247)
T ss_dssp EEEEE-SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT-----S-EEEEEESSH--HGGGGGS--TT--SSE
T ss_pred EEEEecccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCC--ceEEEEecCCc--cHHhcCcCccccCcce
Confidence 45555 899999998888875444 356666633311111112222212 25899887664 3456666778889999
Q ss_pred EEEEcCCCCcC
Q psy5323 97 LMFLDSHCELG 107 (110)
Q Consensus 97 i~flD~d~~~~ 107 (110)
|..+|.|..+.
T Consensus 79 Vl~~DDDv~~~ 89 (247)
T PF09258_consen 79 VLSLDDDVMLS 89 (247)
T ss_dssp EEEEETTEEE-
T ss_pred EEEecCCcccC
Confidence 99999997654
No 122
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=57.18 E-value=45 Score=22.91 Aligned_cols=80 Identities=9% Similarity=0.056 Sum_probs=43.1
Q ss_pred CCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhc--cCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEc
Q psy5323 24 KERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQT--RLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLD 101 (110)
Q Consensus 24 ~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~--~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD 101 (110)
.++ .++...++.+......+++++=... .+.+..++.. +....+.++......|.+.|...+.. ...+.++++.
T Consensus 27 ~g~-pli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~~-~~~~~~lv~~ 102 (220)
T cd06426 27 GGK-PILETIIDRFIAQGFRNFYISVNYL--AEMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLPE-KPTDPFLVMN 102 (220)
T ss_pred CCc-chHHHHHHHHHHCCCcEEEEECccC--HHHHHHHHCCccccCccEEEEECCCCCcchHHHHHHHh-hCCCCEEEEc
Confidence 444 5777777776655445666664331 1223333320 11113555555455687777654443 3356677778
Q ss_pred CCCCcC
Q psy5323 102 SHCELG 107 (110)
Q Consensus 102 ~d~~~~ 107 (110)
+|....
T Consensus 103 ~D~i~~ 108 (220)
T cd06426 103 GDILTN 108 (220)
T ss_pred CCEeec
Confidence 886543
No 123
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=56.36 E-value=47 Score=20.79 Aligned_cols=49 Identities=33% Similarity=0.516 Sum_probs=31.5
Q ss_pred CCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC----CCchHHHHHHHh
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH----YELQGKLDYYIQ 63 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~----d~t~~~l~~~~~ 63 (110)
...++++......|.-.+...++......=++++||. ++....+-..+.
T Consensus 52 ~~~i~~i~~~~n~g~~~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~ 104 (169)
T PF00535_consen 52 DPNIRYIRNPENLGFSAARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALE 104 (169)
T ss_dssp STTEEEEEHCCCSHHHHHHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeEEEEeCCCceEcHHHHHHHHHHHH
Confidence 4467788877666888887777776666678888888 333344444444
No 124
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=55.55 E-value=99 Score=24.23 Aligned_cols=78 Identities=17% Similarity=0.156 Sum_probs=48.8
Q ss_pred cCCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC--CCEEEEE
Q psy5323 23 LKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFL 100 (110)
Q Consensus 23 ~~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~--g~~i~fl 100 (110)
...+ .++...+..+......+++++-... .+.+.+++. ... .+.++..+...|.+.|...+..... .++++++
T Consensus 28 i~g~-pli~~~l~~l~~~gi~~iiiv~~~~--~~~i~~~~~-~~~-~i~~~~~~~~~Gt~~al~~a~~~l~~~~~~vlv~ 102 (459)
T PRK14355 28 LAGR-PMVSWPVAAAREAGAGRIVLVVGHQ--AEKVREHFA-GDG-DVSFALQEEQLGTGHAVACAAPALDGFSGTVLIL 102 (459)
T ss_pred eCCc-cHHHHHHHHHHhcCCCeEEEEECCC--HHHHHHHhc-cCC-ceEEEecCCCCCHHHHHHHHHHHhhccCCcEEEE
Confidence 3443 6777777776655456666664431 122333333 222 4777666666788888888887764 3789999
Q ss_pred cCCCC
Q psy5323 101 DSHCE 105 (110)
Q Consensus 101 D~d~~ 105 (110)
++|..
T Consensus 103 ~gD~p 107 (459)
T PRK14355 103 CGDVP 107 (459)
T ss_pred ECCcc
Confidence 99973
No 125
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=55.21 E-value=71 Score=23.84 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=50.1
Q ss_pred EEecCCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhc--cCCCcEEEEEccCCcchHHHHHHHHHhcCC-CE
Q psy5323 20 LIRLKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQT--RLPPKVRLIRLKERAGLIRARIAGAENAKG-DV 96 (110)
Q Consensus 20 ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~--~~~~~~~~i~~~~~~G~~~arn~G~~~a~g-~~ 96 (110)
+++...+ .+|...++.+......||++|-.+... ..+..++.. ....++.++..+...|.+.|...|.....+ ++
T Consensus 28 Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~-~~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al~~a~~~i~~~~~ 105 (292)
T PRK15480 28 LLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDT-PRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDC 105 (292)
T ss_pred EeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCch-HHHHHHHcCccccCceeEEEECCCCCCHHHHHHHHHHHhCCCCE
Confidence 3455555 567777777665556788877544211 123333320 122246778888788999999999888754 56
Q ss_pred EEEEcCCC
Q psy5323 97 LMFLDSHC 104 (110)
Q Consensus 97 i~flD~d~ 104 (110)
++++ +|.
T Consensus 106 ~lv~-gD~ 112 (292)
T PRK15480 106 ALVL-GDN 112 (292)
T ss_pred EEEE-CCe
Confidence 5555 553
No 126
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=54.67 E-value=63 Score=22.73 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=45.5
Q ss_pred chHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhc--cCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCC
Q psy5323 26 RAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQT--RLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 103 (110)
Q Consensus 26 ~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~--~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d 103 (110)
...++...++.+......+|++|-.+... +.+..++.. ..+..+.+...+...|.+.|...+.....++-++++.+|
T Consensus 30 ~~pli~~~l~~l~~~gi~~i~vv~~~~~~-~~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~lv~~gD 108 (240)
T cd02538 30 DKPMIYYPLSTLMLAGIREILIISTPEDL-PLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDDPVCLILGD 108 (240)
T ss_pred CEEhHHHHHHHHHHCCCCEEEEEeCcchH-HHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHhcCCCCEEEEECC
Confidence 35677777777665555688777543111 122333320 122135555555567999999888887765655555666
Q ss_pred CC
Q psy5323 104 CE 105 (110)
Q Consensus 104 ~~ 105 (110)
..
T Consensus 109 ~~ 110 (240)
T cd02538 109 NI 110 (240)
T ss_pred EE
Confidence 43
No 127
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=54.03 E-value=1.1e+02 Score=24.44 Aligned_cols=72 Identities=15% Similarity=0.224 Sum_probs=46.2
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC---CCEEEEEcCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK---GDVLMFLDSHC 104 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~---g~~i~flD~d~ 104 (110)
.++...+..+......+++++-... .+.+..++. .. ++.++..+...|.+.|.-.|+.... .+ ++++++|.
T Consensus 36 pli~~~l~~l~~~gi~~ivvv~~~~--~~~i~~~~~-~~--~i~~v~~~~~~Gt~~al~~~~~~l~~~~~~-~lV~~gD~ 109 (481)
T PRK14358 36 PMVAWAVKAARDLGARKIVVVTGHG--AEQVEAALQ-GS--GVAFARQEQQLGTGDAFLSGASALTEGDAD-ILVLYGDT 109 (481)
T ss_pred eHHHHHHHHHHhCCCCeEEEEeCCC--HHHHHHHhc-cC--CcEEecCCCcCCcHHHHHHHHHHhhCCCCc-EEEEeCCe
Confidence 6666667766555456777775541 123444443 32 4778877777799998888887753 34 56789996
Q ss_pred C
Q psy5323 105 E 105 (110)
Q Consensus 105 ~ 105 (110)
.
T Consensus 110 P 110 (481)
T PRK14358 110 P 110 (481)
T ss_pred e
Confidence 3
No 128
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=52.90 E-value=70 Score=21.69 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=32.9
Q ss_pred HHHHHhhhCCCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHh
Q psy5323 6 LDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQ 63 (110)
Q Consensus 6 l~~~~~~~lp~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~ 63 (110)
+..+.. +.|..++++.+....|.-.+...++....+.-|+++|+. ......++.+++
T Consensus 48 ~~~~~~-~~~~~i~~i~~~~n~G~~~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~ 105 (211)
T cd04188 48 ARKLAR-KNPALIRVLTLPKNRGKGGAVRAGMLAARGDYILFADADLATPFEELEKLEE 105 (211)
T ss_pred HHHHHH-hCCCcEEEEEcccCCCcHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 444444 244445666665556666666666665666667777755 334455555554
No 129
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=51.44 E-value=70 Score=21.26 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=24.3
Q ss_pred EEEEecCCchHHHHHHHhccccccCCEEEEEeCC
Q psy5323 18 VRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 51 (110)
Q Consensus 18 v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~ 51 (110)
++++......|.-.++..++....+.=|+++|+.
T Consensus 57 i~~i~~~~n~G~~~a~N~g~~~a~gd~i~~lD~D 90 (201)
T cd04195 57 LKVVPLEKNRGLGKALNEGLKHCTYDWVARMDTD 90 (201)
T ss_pred eEEEEcCccccHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6666666667777777777766666778888877
No 130
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=50.98 E-value=1e+02 Score=22.91 Aligned_cols=82 Identities=11% Similarity=0.129 Sum_probs=47.0
Q ss_pred EecCCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhc--cCCCcEEEEEccCCcchHHHHHHHHHhcCC-CEE
Q psy5323 21 IRLKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQT--RLPPKVRLIRLKERAGLIRARIAGAENAKG-DVL 97 (110)
Q Consensus 21 i~~~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~--~~~~~~~~i~~~~~~G~~~arn~G~~~a~g-~~i 97 (110)
++..++ .+|.-.++.+......+|++|-.+... +.+..++.. ...-++.++..+...|.+.|.-.|.....+ +++
T Consensus 25 lpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~-~~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al~~a~~~l~~~~~~ 102 (286)
T TIGR01207 25 LPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDT-PRFQQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGEDFIGGDPSA 102 (286)
T ss_pred eEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcH-HHHHHHhccccccCceEEEEEccCCCCHHHHHHHHHHHhCCCCEE
Confidence 444555 566666666655555788766533111 222333320 122236666666778999999999988754 455
Q ss_pred EEEcCCCC
Q psy5323 98 MFLDSHCE 105 (110)
Q Consensus 98 ~flD~d~~ 105 (110)
+++ +|..
T Consensus 103 li~-gD~i 109 (286)
T TIGR01207 103 LVL-GDNI 109 (286)
T ss_pred EEE-CCEe
Confidence 544 6543
No 131
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=50.88 E-value=26 Score=31.19 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=31.9
Q ss_pred cEEEEEccCCcc-----hHHHHHHHHHh----cCCCEEEEEcCCCCcC
Q psy5323 69 KVRLIRLKERAG-----LIRARIAGAEN----AKGDVLMFLDSHCELG 107 (110)
Q Consensus 69 ~~~~i~~~~~~G-----~~~arn~G~~~----a~g~~i~flD~d~~~~ 107 (110)
.+-++..+++.| .++|.|..++. ..|+||..+|+|-.+.
T Consensus 517 ~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiN 564 (1079)
T PLN02638 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYIN 564 (1079)
T ss_pred ceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccC
Confidence 567777777777 78999999955 4999999999998654
No 132
>PLN02248 cellulose synthase-like protein
Probab=50.19 E-value=27 Score=31.28 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=33.0
Q ss_pred cCCCcEEEEEccCCcc-----hHHHHHHHHH----hcCCCEEEEEcCCCCcCC
Q psy5323 65 RLPPKVRLIRLKERAG-----LIRARIAGAE----NAKGDVLMFLDSHCELGT 108 (110)
Q Consensus 65 ~~~~~~~~i~~~~~~G-----~~~arn~G~~----~a~g~~i~flD~d~~~~~ 108 (110)
+.| .+-++..+++.| .++|.|.-++ ...|+||..+|+|..+.+
T Consensus 583 ~lP-~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNn 634 (1135)
T PLN02248 583 RLP-MLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYN 634 (1135)
T ss_pred ccc-eeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCC
Confidence 345 566776666666 6888888887 679999999999987643
No 133
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=49.66 E-value=88 Score=21.86 Aligned_cols=71 Identities=8% Similarity=0.094 Sum_probs=38.7
Q ss_pred hHHHHHHHhccccc-cCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEc--cCCcchHHHHHHHHHhcCCCEEEEEcCC
Q psy5323 27 AGLIRARIAGAENA-KGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRL--KERAGLIRARIAGAENAKGDVLMFLDSH 103 (110)
Q Consensus 27 ~~~i~~~l~~~~~~-~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~--~~~~G~~~arn~G~~~a~g~~i~flD~d 103 (110)
..++...+..+... ...+|+++-+. +.+..++. ..+ ++++.. ....|.+... .++.....+.++++++|
T Consensus 27 kPli~~~i~~l~~~~~~~~ivv~t~~----~~i~~~~~-~~~--~~v~~~~~~~~~g~~~~~-~a~~~~~~d~~lv~~~D 98 (238)
T PRK13368 27 KPMIQHVYERAAQAAGVEEVYVATDD----QRIEDAVE-AFG--GKVVMTSDDHLSGTDRLA-EVMLKIEADIYINVQGD 98 (238)
T ss_pred cCHHHHHHHHHHhcCCCCeEEEECCh----HHHHHHHH-HcC--CeEEecCccCCCccHHHH-HHHHhCCCCEEEEEcCC
Confidence 45566666665554 34677776443 23344444 333 333332 3334554333 34555556899999999
Q ss_pred CC
Q psy5323 104 CE 105 (110)
Q Consensus 104 ~~ 105 (110)
..
T Consensus 99 ~P 100 (238)
T PRK13368 99 EP 100 (238)
T ss_pred cC
Confidence 74
No 134
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=49.55 E-value=79 Score=21.35 Aligned_cols=46 Identities=30% Similarity=0.426 Sum_probs=30.4
Q ss_pred EEEEecCCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHh
Q psy5323 18 VRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQ 63 (110)
Q Consensus 18 v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~ 63 (110)
+.++......|.-.+...++....+.=|+++|+. ....++++.++.
T Consensus 55 i~~~~~~~n~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~ 101 (224)
T cd06442 55 VRLIVRPGKRGLGSAYIEGFKAARGDVIVVMDADLSHPPEYIPELLE 101 (224)
T ss_pred eEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4566666666776666667666666667788877 445666666655
No 135
>PLN02917 CMP-KDO synthetase
Probab=48.90 E-value=94 Score=23.19 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=39.2
Q ss_pred hHHHHHHHhcccccc-CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEc--cCCcchHHHHHHHHHhcC--CCEEEEEc
Q psy5323 27 AGLIRARIAGAENAK-GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRL--KERAGLIRARIAGAENAK--GDVLMFLD 101 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~-~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~--~~~~G~~~arn~G~~~a~--g~~i~flD 101 (110)
..++...+..+.... ..+|++.-|.+. +..++. .. .++++.+ ....|.+.+. .|++... .+++++++
T Consensus 72 kPLL~~vi~~a~~~~~~~~VVV~~~~e~----I~~~~~-~~--~v~vi~~~~~~~~GT~~~~-~a~~~l~~~~d~Vlil~ 143 (293)
T PLN02917 72 KPMIQRTWERAKLATTLDHIVVATDDER----IAECCR-GF--GADVIMTSESCRNGTERCN-EALKKLEKKYDIVVNIQ 143 (293)
T ss_pred EEHHHHHHHHHHcCCCCCEEEEECChHH----HHHHHH-Hc--CCEEEeCCcccCCchHHHH-HHHHhccCCCCEEEEec
Confidence 345555555554332 345555433232 222333 22 3455543 3445777774 6776664 58999999
Q ss_pred CCCCc
Q psy5323 102 SHCEL 106 (110)
Q Consensus 102 ~d~~~ 106 (110)
+|..+
T Consensus 144 gD~Pl 148 (293)
T PLN02917 144 GDEPL 148 (293)
T ss_pred CCcCC
Confidence 99874
No 136
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=48.11 E-value=46 Score=22.30 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=44.0
Q ss_pred hHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEc--cCCcchHHHHHHHHHhcCCCEEEEEcCCC
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRL--KERAGLIRARIAGAENAKGDVLMFLDSHC 104 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~--~~~~G~~~arn~G~~~a~g~~i~flD~d~ 104 (110)
..++...+..+.. ...+|+++-+.+. .. +..... +++++.. +...|...+...|+.....++++++++|.
T Consensus 27 ~pll~~~l~~l~~-~~~~ivv~~~~~~-~~----~~~~~~--~~~~i~~~~~~~~g~~~si~~al~~~~~~~vlv~~~D~ 98 (186)
T TIGR02665 27 KPLIEHVLARLRP-QVSDLAISANRNP-ER----YAQAGF--GLPVVPDALADFPGPLAGILAGLRWAGTDWVLTVPCDT 98 (186)
T ss_pred EEHHHHHHHHHHh-hCCEEEEEcCCCH-HH----HhhccC--CCcEEecCCCCCCCCHHHHHHHHHhcCCCeEEEEecCC
Confidence 3555555555543 2567777654321 11 111012 3455554 33478999999999988889999999997
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 99 P~ 100 (186)
T TIGR02665 99 PF 100 (186)
T ss_pred Cc
Confidence 53
No 137
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=47.38 E-value=1.3e+02 Score=23.33 Aligned_cols=74 Identities=11% Similarity=0.064 Sum_probs=45.3
Q ss_pred hHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhc---CCCEEEEEcCC
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENA---KGDVLMFLDSH 103 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a---~g~~i~flD~d 103 (110)
..++...+..+......++++|-.+. .+.++.++. .. .++++.++...|.+.|.-.++... ..++++++++|
T Consensus 33 kpli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~-~~--~~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD 107 (456)
T PRK14356 33 EPMLRFVYRALRPLFGDNVWTVVGHR--ADMVRAAFP-DE--DARFVLQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGD 107 (456)
T ss_pred CcHHHHHHHHHHhcCCCcEEEEECCC--HHHHHHhcc-cc--CceEEEcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence 45566666655444345776665441 122333333 22 467777776678888877776654 35889999999
Q ss_pred CC
Q psy5323 104 CE 105 (110)
Q Consensus 104 ~~ 105 (110)
..
T Consensus 108 ~P 109 (456)
T PRK14356 108 TP 109 (456)
T ss_pred cc
Confidence 74
No 138
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=47.08 E-value=95 Score=21.55 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=45.2
Q ss_pred cCCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccC------CCcEEEEEccCCcchHHHHHHHHHhcCCCE
Q psy5323 23 LKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRL------PPKVRLIRLKERAGLIRARIAGAENAKGDV 96 (110)
Q Consensus 23 ~~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~------~~~~~~i~~~~~~G~~~arn~G~~~a~g~~ 96 (110)
..++ .++...+..+......+|++|-..+. ...++.++. .. +..+.++......|.+.|...+.....++
T Consensus 28 v~g~-pli~~~l~~l~~~g~~~iivv~~~~~-~~~i~~~l~-~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~d- 103 (214)
T cd04198 28 VANK-PMIWYPLDWLEKAGFEDVIVVVPEEE-QAEISTYLR-SFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKIKKD- 103 (214)
T ss_pred ECCe-eHHHHHHHHHHHCCCCeEEEEECHHH-HHHHHHHHH-hcccccCcceeEEEecCCCCcChHHHHHHHHhhcCCC-
Confidence 3444 56666666665544567777754311 122333333 22 11233444456679999999988887666
Q ss_pred EEEEcCCCC
Q psy5323 97 LMFLDSHCE 105 (110)
Q Consensus 97 i~flD~d~~ 105 (110)
++++.+|..
T Consensus 104 ~lv~~~D~i 112 (214)
T cd04198 104 FLVLSCDLI 112 (214)
T ss_pred EEEEeCccc
Confidence 566667754
No 139
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=46.65 E-value=1.4e+02 Score=23.25 Aligned_cols=77 Identities=9% Similarity=0.100 Sum_probs=46.9
Q ss_pred ecCCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC--CCEEEE
Q psy5323 22 RLKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK--GDVLMF 99 (110)
Q Consensus 22 ~~~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~--g~~i~f 99 (110)
+..++ .++...+..+......+++++-.... +.+..++. ..+.++..+...|.+.|...++.... .+++++
T Consensus 26 ~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~--~~i~~~~~----~~~~~~~~~~~~g~~~al~~a~~~l~~~~d~vlv 98 (458)
T PRK14354 26 KVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGA--EEVKEVLG----DRSEFALQEEQLGTGHAVMQAEEFLADKEGTTLV 98 (458)
T ss_pred EeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCH--HHHHHHhc----CCcEEEEcCCCCCHHHHHHHHHHHhcccCCeEEE
Confidence 33444 77777777776554566666544411 22333333 13555555666788888888877654 378899
Q ss_pred EcCCCC
Q psy5323 100 LDSHCE 105 (110)
Q Consensus 100 lD~d~~ 105 (110)
+++|..
T Consensus 99 ~~~D~p 104 (458)
T PRK14354 99 ICGDTP 104 (458)
T ss_pred EECCcc
Confidence 999964
No 140
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=46.52 E-value=79 Score=21.67 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=40.0
Q ss_pred chHHHHHHHhcccccc-CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEcc----CCcchHHHHHHHHHhcC-----CC
Q psy5323 26 RAGLIRARIAGAENAK-GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLK----ERAGLIRARIAGAENAK-----GD 95 (110)
Q Consensus 26 ~~~~i~~~l~~~~~~~-~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~----~~~G~~~arn~G~~~a~-----g~ 95 (110)
...++...+..+.... ..+|+++-|.+..... .. +....+.+.+.+ ...|...+-..|++... .+
T Consensus 25 Gkpll~~~l~~l~~~~~~~~IvV~~~~~~i~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d 99 (223)
T cd02513 25 GKPLIAWTIEAALESKLFDRVVVSTDDEEIAEV----AR-KYGAEVPFLRPAELATDTASSIDVILHALDQLEELGRDFD 99 (223)
T ss_pred CccHHHHHHHHHHhCCCCCEEEEECCcHHHHHH----HH-HhCCCceeeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCC
Confidence 3456666666655443 4567665443222222 22 222112233322 22356666677776543 37
Q ss_pred EEEEEcCCCCc
Q psy5323 96 VLMFLDSHCEL 106 (110)
Q Consensus 96 ~i~flD~d~~~ 106 (110)
+++++++|..+
T Consensus 100 ~vlv~~~D~P~ 110 (223)
T cd02513 100 IVVLLQPTSPL 110 (223)
T ss_pred EEEEeCCCCCc
Confidence 99999999864
No 141
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=45.51 E-value=1e+02 Score=21.57 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=38.1
Q ss_pred chHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhc---CCCEEEEEcC
Q psy5323 26 RAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENA---KGDVLMFLDS 102 (110)
Q Consensus 26 ~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a---~g~~i~flD~ 102 (110)
...++...+..+......+|+++-+.+ .+..++. +....+.+...+...|.+.+.. ++... .+++++++++
T Consensus 26 Gkpll~~~l~~l~~~~i~~ivvv~~~~----~i~~~~~-~~~~~v~~~~~~~~~gt~~~~~-~~~~~~~~~~~~vlv~~~ 99 (245)
T PRK05450 26 GKPMIVRVYERASKAGADRVVVATDDE----RIADAVE-AFGGEVVMTSPDHPSGTDRIAE-AAAKLGLADDDIVVNVQG 99 (245)
T ss_pred CcCHHHHHHHHHHhcCCCeEEEECCcH----HHHHHHH-HcCCEEEECCCcCCCchHHHHH-HHHhcCCCCCCEEEEecC
Confidence 356666666665544456777765432 2333333 3321232222344445544333 23222 4688899999
Q ss_pred CCC
Q psy5323 103 HCE 105 (110)
Q Consensus 103 d~~ 105 (110)
|..
T Consensus 100 D~P 102 (245)
T PRK05450 100 DEP 102 (245)
T ss_pred CCC
Confidence 984
No 142
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=45.37 E-value=86 Score=20.55 Aligned_cols=47 Identities=26% Similarity=0.455 Sum_probs=27.9
Q ss_pred eEEEEecCCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHh
Q psy5323 17 KVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQ 63 (110)
Q Consensus 17 ~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~ 63 (110)
.+.++......|.-.+...++....+.=++++|+. .-..++++.+++
T Consensus 56 ~i~~i~~~~n~G~~~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~ 103 (181)
T cd04187 56 RVKVIRLSRNFGQQAALLAGLDHARGDAVITMDADLQDPPELIPEMLA 103 (181)
T ss_pred CEEEEEecCCCCcHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 35555555555665555555555556667777766 445567776665
No 143
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=44.92 E-value=1.1e+02 Score=21.52 Aligned_cols=76 Identities=11% Similarity=0.169 Sum_probs=41.7
Q ss_pred hHHHHHHHhcccccc-CCEEEEEeCCCCchHHHHHHHhccCC---CcEEEEEccCCcchHHHHHHHHHhc-CCCEEEEEc
Q psy5323 27 AGLIRARIAGAENAK-GDVLMFLDSHYELQGKLDYYIQTRLP---PKVRLIRLKERAGLIRARIAGAENA-KGDVLMFLD 101 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~-~~EiivVDD~d~t~~~l~~~~~~~~~---~~~~~i~~~~~~G~~~arn~G~~~a-~g~~i~flD 101 (110)
..++..++..+.... ..+++||-+.+. ...++.++. ++. .+++++... .|-..+--.|+... ..++++++|
T Consensus 30 kpll~~~i~~~~~~~~~~~ivVv~~~~~-~~~~~~~~~-~~~~~~~~~~~v~~g--~~r~~sv~~gl~~~~~~d~vli~~ 105 (230)
T PRK13385 30 EPIFIHALRPFLADNRCSKIIIVTQAQE-RKHVQDLMK-QLNVADQRVEVVKGG--TERQESVAAGLDRIGNEDVILVHD 105 (230)
T ss_pred eEHHHHHHHHHHcCCCCCEEEEEeChhh-HHHHHHHHH-hcCcCCCceEEcCCC--chHHHHHHHHHHhccCCCeEEEcc
Confidence 456666666654433 456777655421 122222332 221 135555422 24457777788765 357899999
Q ss_pred CCCCc
Q psy5323 102 SHCEL 106 (110)
Q Consensus 102 ~d~~~ 106 (110)
+|..+
T Consensus 106 ~d~P~ 110 (230)
T PRK13385 106 GARPF 110 (230)
T ss_pred CCCCC
Confidence 99864
No 144
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=44.72 E-value=64 Score=22.25 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=19.6
Q ss_pred hHHHHHHHHHh-cCCCEEEEEcCCCCcC
Q psy5323 81 LIRARIAGAEN-AKGDVLMFLDSHCELG 107 (110)
Q Consensus 81 ~~~arn~G~~~-a~g~~i~flD~d~~~~ 107 (110)
..-+|-.-.+. ..=+-+++||+|..+.
T Consensus 85 ~~~~rl~i~~ll~~~drilyLD~D~lv~ 112 (250)
T PF01501_consen 85 ATFARLFIPDLLPDYDRILYLDADTLVL 112 (250)
T ss_dssp GGGGGGGHHHHSTTSSEEEEE-TTEEES
T ss_pred HHHHHhhhHHHHhhcCeEEEEcCCeeee
Confidence 44466667777 7778999999998764
No 145
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=42.45 E-value=1.1e+02 Score=21.02 Aligned_cols=75 Identities=8% Similarity=0.033 Sum_probs=42.8
Q ss_pred hHHHHHHHhccccc-cCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhc-CCCEEEEEcCCC
Q psy5323 27 AGLIRARIAGAENA-KGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENA-KGDVLMFLDSHC 104 (110)
Q Consensus 27 ~~~i~~~l~~~~~~-~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a-~g~~i~flD~d~ 104 (110)
..++..++..+... ...+|++|-+.+.. ..+...+. ... .+.++... .+...+...|+... ..++++++++|.
T Consensus 27 kpll~~~l~~l~~~~~~~~ivVv~~~~~~-~~~~~~~~-~~~-~~~~~~~~--~~~~~sl~~~l~~~~~~d~vlv~~~D~ 101 (217)
T TIGR00453 27 RPLLEHTLDAFLAHPAIDEVVVVVSPEDQ-EFFQKYLV-ARA-VPKIVAGG--DTRQDSVRNGLKALKDAEWVLVHDAAR 101 (217)
T ss_pred eEHHHHHHHHHhcCCCCCEEEEEEChHHH-HHHHHHhh-cCC-cEEEeCCC--chHHHHHHHHHHhCCCCCEEEEccCcc
Confidence 46666667666544 35677777554211 11222222 111 24444321 24567777888877 678999999998
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 102 P~ 103 (217)
T TIGR00453 102 PF 103 (217)
T ss_pred CC
Confidence 64
No 146
>KOG0385|consensus
Probab=42.41 E-value=71 Score=27.93 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=38.4
Q ss_pred cCCEEEEEeCC---CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCCCc
Q psy5323 41 KGDVLMFLDSH---YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCEL 106 (110)
Q Consensus 41 ~~~EiivVDD~---d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~~~ 106 (110)
.++|..=+|-. ++....++.|.+ ......-++-...-+|+ |+..+++|.++|.|||=-+
T Consensus 510 R~y~ycRiDGSt~~eeR~~aI~~fn~-~~s~~FiFlLSTRAGGL------GINL~aADtVIlyDSDWNP 571 (971)
T KOG0385|consen 510 RGYEYCRLDGSTSHEEREDAIEAFNA-PPSEKFIFLLSTRAGGL------GINLTAADTVILYDSDWNP 571 (971)
T ss_pred cCceeEeecCCCCcHHHHHHHHhcCC-CCcceEEEEEecccccc------ccccccccEEEEecCCCCc
Confidence 36888888777 445556666655 22112333333444455 7999999999999999543
No 147
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=41.87 E-value=85 Score=19.48 Aligned_cols=46 Identities=33% Similarity=0.402 Sum_probs=27.9
Q ss_pred CeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHH
Q psy5323 16 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYY 61 (110)
Q Consensus 16 ~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~ 61 (110)
..+.++...+..|...+...++......=|+++|+. .-...+++.+
T Consensus 53 ~~~~~~~~~~~~g~~~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 53 RRVLVVRDKENGGKAGALNAGLRHAKGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred ceEEEEEecccCCchHHHHHHHHhcCCCEEEEECCCCCcChHHHHHH
Confidence 345555566666666666666655555567888777 3345566655
No 148
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=40.65 E-value=1.1e+02 Score=21.48 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=8.6
Q ss_pred CcchHHHHHHHHHhcCCCEEE
Q psy5323 78 RAGLIRARIAGAENAKGDVLM 98 (110)
Q Consensus 78 ~~G~~~arn~G~~~a~g~~i~ 98 (110)
-.|+-..+-.--+.-+..+++
T Consensus 59 ~~G~e~~~~l~~~~p~~~vvv 79 (211)
T COG2197 59 MDGLEALKQLRARGPDIKVVV 79 (211)
T ss_pred CChHHHHHHHHHHCCCCcEEE
Confidence 334444444443333334333
No 149
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=40.04 E-value=1.1e+02 Score=20.24 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=28.9
Q ss_pred eEEEEecCCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHh
Q psy5323 17 KVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQ 63 (110)
Q Consensus 17 ~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~ 63 (110)
.+.+++.....|.-.+...++......=|+++|+. .-..++++.+++
T Consensus 59 ~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~ 106 (202)
T cd04184 59 RIKVVFREENGGISAATNSALELATGEFVALLDHDDELAPHALYEVVK 106 (202)
T ss_pred CEEEEEcccCCCHHHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHH
Confidence 45555665666666666666655556667788777 444556655554
No 150
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=39.90 E-value=1.3e+02 Score=20.96 Aligned_cols=76 Identities=11% Similarity=0.114 Sum_probs=43.4
Q ss_pred hHHHHHHHhcccccc-CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhc-CCCEEEEEcCCC
Q psy5323 27 AGLIRARIAGAENAK-GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENA-KGDVLMFLDSHC 104 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~-~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a-~g~~i~flD~d~ 104 (110)
..++...+..+.... ..+|++|-+.+........+.. ... ++.++... .+.+.+--.|+... ..++++++|+|.
T Consensus 31 ~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~-~~~-~~~~~~~~--~~~~~sv~~~l~~~~~~d~vlv~~~D~ 106 (227)
T PRK00155 31 KPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA-KDP-KVTVVAGG--AERQDSVLNGLQALPDDDWVLVHDAAR 106 (227)
T ss_pred EEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc-cCC-ceEEeCCc--chHHHHHHHHHHhCCCCCEEEEccCcc
Confidence 456666666655433 4577777555221222222222 211 34444322 25678888888876 678999999997
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 107 P~ 108 (227)
T PRK00155 107 PF 108 (227)
T ss_pred CC
Confidence 64
No 151
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=39.86 E-value=72 Score=22.38 Aligned_cols=70 Identities=11% Similarity=0.133 Sum_probs=45.1
Q ss_pred hHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCc-chHHHHHHHHHhcCCCEEEEEcCCCC
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERA-GLIRARIAGAENAKGDVLMFLDSHCE 105 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~-G~~~arn~G~~~a~g~~i~flD~d~~ 105 (110)
..++...++.+..+.. ++++.=..+.. .+.. + .+.++.-.... |...+.-+|++.+.++++.|+=+|+.
T Consensus 29 ~~lie~v~~~L~~~~~-~vvi~~~~~~~-----~~~~--~--g~~vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P 98 (192)
T COG0746 29 RPLIEHVIDRLRPQVD-VVVISANRNQG-----RYAE--F--GLPVVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMP 98 (192)
T ss_pred eEHHHHHHHHhcccCC-EEEEeCCCchh-----hhhc--c--CCceeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4455555555555544 44443222111 1222 2 36667655555 99999999999999999999999986
Q ss_pred c
Q psy5323 106 L 106 (110)
Q Consensus 106 ~ 106 (110)
+
T Consensus 99 ~ 99 (192)
T COG0746 99 F 99 (192)
T ss_pred C
Confidence 5
No 152
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=38.64 E-value=2.1e+02 Score=23.14 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=52.3
Q ss_pred EEEecCCc-hHHHHHHHhccc-----cccCCEEEEEeCC--CC---c---hHHHHHHHhccCC-CcEEEEEcc-CCcchH
Q psy5323 19 RLIRLKER-AGLIRARIAGAE-----NAKGDVLMFLDSH--YE---L---QGKLDYYIQTRLP-PKVRLIRLK-ERAGLI 82 (110)
Q Consensus 19 ~ii~~~~~-~~~i~~~l~~~~-----~~~~~EiivVDD~--d~---t---~~~l~~~~~~~~~-~~~~~i~~~-~~~G~~ 82 (110)
.|++..++ ...+.+-|.... .....-++||-.+ .+ . .+.+..+.. +++ .+++++... +.---+
T Consensus 251 iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~-k~~~~~i~~i~~~~~~fsr~ 329 (499)
T PF05679_consen 251 IIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELER-KYPFSRIKWISVKTGEFSRG 329 (499)
T ss_pred EEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHH-hCCccceEEEEecCCCccHH
Confidence 66787777 666655444322 1223345555444 11 1 235555555 664 257888766 444467
Q ss_pred HHHHHHHHhcC-CCEEEEEcCCCCcCC
Q psy5323 83 RARIAGAENAK-GDVLMFLDSHCELGT 108 (110)
Q Consensus 83 ~arn~G~~~a~-g~~i~flD~d~~~~~ 108 (110)
.|...|++... .+++.|+|-|..+++
T Consensus 330 ~~Ld~g~~~~~~d~L~f~~Dvd~~f~~ 356 (499)
T PF05679_consen 330 AALDVGAKKFPPDSLLFFCDVDMVFTS 356 (499)
T ss_pred HHHHhhcccCCCCcEEEEEeCCcccCH
Confidence 77788887554 447888899988765
No 153
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=36.79 E-value=1.4e+02 Score=20.62 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=45.8
Q ss_pred EEecCCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCC-------CcEEEEEccCCcchHHHHHH--HHH
Q psy5323 20 LIRLKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLP-------PKVRLIRLKERAGLIRARIA--GAE 90 (110)
Q Consensus 20 ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~-------~~~~~i~~~~~~G~~~arn~--G~~ 90 (110)
.++..++ .+|...++.+......+|+++-.. ..+.+.+++..... ..+.++.+++..|.+.|... ...
T Consensus 25 llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~--~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~al~~~~~~~ 101 (217)
T cd04197 25 LLPLANV-PLIDYTLEFLALNGVEEVFVFCCS--HSDQIKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDALRDLDAKG 101 (217)
T ss_pred eeEECCE-ehHHHHHHHHHHCCCCeEEEEeCC--CHHHHHHHHhhccccccccCcceEEEEeCCCcCccchHHHHHhhcc
Confidence 4555666 488888888776656788777665 11223333331111 13666666666676665322 111
Q ss_pred hcCCCEEEEEcCCCCcC
Q psy5323 91 NAKGDVLMFLDSHCELG 107 (110)
Q Consensus 91 ~a~g~~i~flD~d~~~~ 107 (110)
...++ ++.+.+|..+.
T Consensus 102 ~~~~~-flv~~gD~i~~ 117 (217)
T cd04197 102 LIRGD-FILVSGDVVSN 117 (217)
T ss_pred ccCCC-EEEEeCCeeec
Confidence 12445 45777886553
No 154
>PRK10018 putative glycosyl transferase; Provisional
Probab=36.67 E-value=1.7e+02 Score=21.61 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=29.0
Q ss_pred HHHHHhhhCCCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC
Q psy5323 6 LDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 51 (110)
Q Consensus 6 l~~~~~~~lp~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~ 51 (110)
+..+....-...++++.+....|.-.++..++....+.=|+++|+.
T Consensus 50 ~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi~~a~g~~I~~lDaD 95 (279)
T PRK10018 50 LQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQGEYITGIDDD 95 (279)
T ss_pred HHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEECCC
Confidence 3444443122356667766667777766667766667778888877
No 155
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=36.60 E-value=1.6e+02 Score=21.04 Aligned_cols=85 Identities=12% Similarity=0.197 Sum_probs=49.7
Q ss_pred EecCCchHHHHHHHhccccccCCEEEEEeCC--CCchHHH------HHHHhcc-----------C--CCcEEEEEccCCc
Q psy5323 21 IRLKERAGLIRARIAGAENAKGDVLMFLDSH--YELQGKL------DYYIQTR-----------L--PPKVRLIRLKERA 79 (110)
Q Consensus 21 i~~~~~~~~i~~~l~~~~~~~~~EiivVDD~--d~t~~~l------~~~~~~~-----------~--~~~~~~i~~~~~~ 79 (110)
++..++ .+|...++.+......+|+++-.+ +...+.+ +..+.+. . +..+.++..+...
T Consensus 26 lpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 104 (267)
T cd02541 26 LPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQKEPL 104 (267)
T ss_pred eEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEEEEcCCCC
Confidence 444555 778777887766555677776655 2222222 1111100 0 1135566666668
Q ss_pred chHHHHHHHHHhcCCCEEEEEcCCCCc
Q psy5323 80 GLIRARIAGAENAKGDVLMFLDSHCEL 106 (110)
Q Consensus 80 G~~~arn~G~~~a~g~~i~flD~d~~~ 106 (110)
|.+.|...+......+-++++.+|..+
T Consensus 105 Gt~~al~~~~~~i~~~~~lv~~gD~~~ 131 (267)
T cd02541 105 GLGHAVLCAKPFIGDEPFAVLLGDDLI 131 (267)
T ss_pred ChHHHHHHHHHHhCCCceEEEECCeEE
Confidence 999999999888765655666676543
No 156
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=36.02 E-value=2.1e+02 Score=22.23 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=48.6
Q ss_pred EEecCCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC-CCEEE
Q psy5323 20 LIRLKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK-GDVLM 98 (110)
Q Consensus 20 ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~-g~~i~ 98 (110)
+++..++ .++...+..+... ..+|+++-.... +.+..++. ..+.++..+...|.+.|...+..... .++++
T Consensus 22 l~~v~gk-pli~~~l~~l~~~-~~~i~vv~~~~~--~~i~~~~~----~~~~~~~~~~~~g~~~ai~~a~~~l~~~~~vl 93 (448)
T PRK14357 22 LHKISGK-PMINWVIDTAKKV-AQKVGVVLGHEA--ELVKKLLP----EWVKIFLQEEQLGTAHAVMCARDFIEPGDDLL 93 (448)
T ss_pred eeEECCe-eHHHHHHHHHHhc-CCcEEEEeCCCH--HHHHHhcc----cccEEEecCCCCChHHHHHHHHHhcCcCCeEE
Confidence 3344554 6677777766554 367777655521 23344333 13555655666788888888887764 58899
Q ss_pred EEcCCCC
Q psy5323 99 FLDSHCE 105 (110)
Q Consensus 99 flD~d~~ 105 (110)
++++|..
T Consensus 94 v~~gD~p 100 (448)
T PRK14357 94 ILYGDVP 100 (448)
T ss_pred EEeCCcc
Confidence 9999963
No 157
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=35.87 E-value=2.1e+02 Score=22.32 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=45.5
Q ss_pred hHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC-CCEEEEEcCCCC
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK-GDVLMFLDSHCE 105 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~-g~~i~flD~d~~ 105 (110)
..++...+..+......+++++=... .+.+++++. .. +++++..+...|.+.|.-.++.... .++++++++|..
T Consensus 33 kpli~~~i~~l~~~gi~~i~vv~~~~--~~~i~~~~~-~~--~~~~i~~~~~~Gt~~al~~a~~~l~~~~~vlV~~gD~P 107 (456)
T PRK09451 33 KPMVQHVIDAANELGAQHVHLVYGHG--GDLLKQTLA-DE--PLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVP 107 (456)
T ss_pred hhHHHHHHHHHHhcCCCcEEEEECCC--HHHHHHhhc-cC--CcEEEECCCCCCcHHHHHHHHHhhccCCcEEEEeCCcc
Confidence 34555555555444345666664431 123444443 21 4677777777799998888887653 478899999963
No 158
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=35.35 E-value=2.1e+02 Score=22.03 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=24.5
Q ss_pred cchHHHHHHHHHhcCCCEEEEEcCCCCc
Q psy5323 79 AGLIRARIAGAENAKGDVLMFLDSHCEL 106 (110)
Q Consensus 79 ~G~~~arn~G~~~a~g~~i~flD~d~~~ 106 (110)
.|...+.-.|++....+++.++++|..+
T Consensus 78 ~G~~~si~~gl~~~~~~~vlv~~~D~P~ 105 (366)
T PRK14489 78 QGPLSGILAGLEHADSEYLFVVACDTPF 105 (366)
T ss_pred CChHHHHHHHHHhcCCCcEEEeeCCcCC
Confidence 5888999999999888999999999753
No 159
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=33.11 E-value=1.9e+02 Score=23.48 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=43.3
Q ss_pred hhhHHHHHHhh----hCCCeEEEEecCCchHHHHHHHhcccccc-CCEEEEE--eCC--CCchHHHHHHHhccCC
Q psy5323 2 LQGKLDYYIQT----RLPPKVRLIRLKERAGLIRARIAGAENAK-GDVLMFL--DSH--YELQGKLDYYIQTRLP 67 (110)
Q Consensus 2 ~~~~l~~~~~~----~lp~~v~ii~~~~~~~~i~~~l~~~~~~~-~~EiivV--DD~--d~t~~~l~~~~~~~~~ 67 (110)
+++||++.=+. .-...|+++-+-..+.+++.++.++..|. .+-+++| ||+ --|.+.+.-.++..+|
T Consensus 183 lknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lP 257 (527)
T COG5258 183 LKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELP 257 (527)
T ss_pred ecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCC
Confidence 56777765542 12346788888899999999999987665 4444443 666 2356666655554666
No 160
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=33.11 E-value=2.2e+02 Score=22.29 Aligned_cols=51 Identities=16% Similarity=0.299 Sum_probs=36.8
Q ss_pred CeEEEEecCCchHHHHHHHhccccccC-CEEEEEeCCCCchHHHHHHHhccCC
Q psy5323 16 PKVRLIRLKERAGLIRARIAGAENAKG-DVLMFLDSHYELQGKLDYYIQTRLP 67 (110)
Q Consensus 16 ~~v~ii~~~~~~~~i~~~l~~~~~~~~-~EiivVDD~d~t~~~l~~~~~~~~~ 67 (110)
..|.+|..++|..+++..+.|+....+ .+.++|=.||...+.+..+++ ...
T Consensus 32 ~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~-~I~ 83 (356)
T PF05060_consen 32 SIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQ-SID 83 (356)
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHH-hCC
Confidence 367889999999999999998876654 466677667555555666655 443
No 161
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=32.75 E-value=1.7e+02 Score=20.35 Aligned_cols=71 Identities=13% Similarity=0.151 Sum_probs=39.4
Q ss_pred hHHHHHHHhccccc-cCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEcc--CCcchHHHHHHHHHhcCC--CEEEEEc
Q psy5323 27 AGLIRARIAGAENA-KGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLK--ERAGLIRARIAGAENAKG--DVLMFLD 101 (110)
Q Consensus 27 ~~~i~~~l~~~~~~-~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~--~~~G~~~arn~G~~~a~g--~~i~flD 101 (110)
..++...+..+... ...+|+++=++ +.+..++. .++ ++++... ...|.+.+. .++....+ +.+++++
T Consensus 26 kpll~~~l~~l~~~~~i~~ivvv~~~----~~i~~~~~-~~~--~~~~~~~~~~~~gt~~~~-~~~~~~~~~~d~vlv~~ 97 (239)
T cd02517 26 KPMIQHVYERAKKAKGLDEVVVATDD----ERIADAVE-SFG--GKVVMTSPDHPSGTDRIA-EVAEKLDADDDIVVNVQ 97 (239)
T ss_pred cCHHHHHHHHHHhCCCCCEEEEECCc----HHHHHHHH-HcC--CEEEEcCcccCchhHHHH-HHHHhcCCCCCEEEEec
Confidence 46666666666554 35677776332 23344444 332 5554432 234665433 34445544 8899999
Q ss_pred CCCC
Q psy5323 102 SHCE 105 (110)
Q Consensus 102 ~d~~ 105 (110)
+|..
T Consensus 98 gD~P 101 (239)
T cd02517 98 GDEP 101 (239)
T ss_pred CCCC
Confidence 9974
No 162
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=31.56 E-value=1.2e+02 Score=22.68 Aligned_cols=66 Identities=29% Similarity=0.363 Sum_probs=37.3
Q ss_pred HHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCC
Q psy5323 32 ARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHC 104 (110)
Q Consensus 32 ~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~ 104 (110)
+++.++...-..||+|-|.|+.-..++.+ +.++++++++-.. |-.-....|+.. +-|-++|+==|.
T Consensus 41 Aaiega~~aGa~eIvV~DsHg~~~Nll~e----~L~~~a~lI~G~~--~rp~~Mm~Gld~-s~D~v~fiGYHa 106 (263)
T cd08770 41 AACEGAIEAGATEIVVKDAHGSGRNILPS----KLPDNVKLIRGWS--GHPYCMVEGLDE-SFDAVMFIGYHS 106 (263)
T ss_pred HHHHHHHHcCCcEEEEEcCCCCccCcChH----HCCcceEEEeCCC--CCcchHhhcccc-CccEEEEEecCC
Confidence 45555555556787777767443344433 3445899997432 223345556653 456677775454
No 163
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=31.53 E-value=1.2e+02 Score=21.84 Aligned_cols=36 Identities=11% Similarity=-0.008 Sum_probs=26.3
Q ss_pred EEEEccCCcchHH-HHHHHHHhc-C-CCEEEEEcCCCCcC
Q psy5323 71 RLIRLKERAGLIR-ARIAGAENA-K-GDVLMFLDSHCELG 107 (110)
Q Consensus 71 ~~i~~~~~~G~~~-arn~G~~~a-~-g~~i~flD~d~~~~ 107 (110)
-+. ++...|... |.|.|...| . |.=+..+|.|...+
T Consensus 6 av~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~ 44 (275)
T PRK13233 6 AIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKAD 44 (275)
T ss_pred EEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcC
Confidence 344 555555554 899999999 3 88888999998754
No 164
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=31.46 E-value=1.7e+02 Score=22.11 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=39.8
Q ss_pred HHHHHhhhCCCeEEEEecCCchH-HHHHHHhcccc--ccCCEEEEEeCC-CCchHHHHHHHhccCCCcEEEEEccCCcch
Q psy5323 6 LDYYIQTRLPPKVRLIRLKERAG-LIRARIAGAEN--AKGDVLMFLDSH-YELQGKLDYYIQTRLPPKVRLIRLKERAGL 81 (110)
Q Consensus 6 l~~~~~~~lp~~v~ii~~~~~~~-~i~~~l~~~~~--~~~~EiivVDD~-d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~ 81 (110)
|+.+++. ||.. +++...-..+ ...+.+..+.. +.++ ++||-+ +...+-+.++.. -..-.++++.--.+.|+
T Consensus 50 l~el~~~-L~~p-r~vWlMvPag~it~~vi~~la~~L~~GD--ivIDGGNS~y~Ds~rr~~~-l~~kgi~flD~GTSGG~ 124 (300)
T COG1023 50 LDELVAK-LSAP-RIVWLMVPAGDITDAVIDDLAPLLSAGD--IVIDGGNSNYKDSLRRAKL-LAEKGIHFLDVGTSGGV 124 (300)
T ss_pred HHHHHHh-cCCC-cEEEEEccCCCchHHHHHHHHhhcCCCC--EEEECCccchHHHHHHHHH-HHhcCCeEEeccCCCCc
Confidence 6677774 5544 4444333334 33333333322 2244 667888 655554444322 11125889988888888
Q ss_pred HHHH
Q psy5323 82 IRAR 85 (110)
Q Consensus 82 ~~ar 85 (110)
.+++
T Consensus 125 ~G~~ 128 (300)
T COG1023 125 WGAE 128 (300)
T ss_pred hhhh
Confidence 7665
No 165
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=30.92 E-value=2.4e+02 Score=21.45 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=41.1
Q ss_pred HHhccccccCCEEEEEeCC-CC-c-hHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC-CCEEEEE
Q psy5323 33 RIAGAENAKGDVLMFLDSH-YE-L-QGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK-GDVLMFL 100 (110)
Q Consensus 33 ~l~~~~~~~~~EiivVDD~-d~-t-~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~-g~~i~fl 100 (110)
++..+...--.+|++|-+. +. . ...+.. -+ ++..++.+..+++..|++.|--.|-.... .++++.+
T Consensus 37 ~l~~L~~aGI~dI~II~~~~~~~~~~~llGd-gs-~~gv~itY~~Q~~p~GlA~Av~~a~~fv~~~~f~l~L 106 (286)
T COG1209 37 PLETLMLAGIRDILIVVGPEDKPTFKELLGD-GS-DFGVDITYAVQPEPDGLAHAVLIAEDFVGDDDFVLYL 106 (286)
T ss_pred HHHHHHHcCCceEEEEecCCchhhhhhhhcC-cc-ccCcceEEEecCCCCcHHHHHHHHHhhcCCCceEEEe
Confidence 3444443444677777665 22 2 122211 11 22336899999999999999999999998 4455544
No 166
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=30.83 E-value=91 Score=22.35 Aligned_cols=63 Identities=24% Similarity=0.174 Sum_probs=42.9
Q ss_pred CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEcc-------------------CCcchHHHHHHHHHhcCCC--EEE
Q psy5323 42 GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLK-------------------ERAGLIRARIAGAENAKGD--VLM 98 (110)
Q Consensus 42 ~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~-------------------~~~G~~~arn~G~~~a~g~--~i~ 98 (110)
..=+.+.|.. +.....|+.|.+ . . .+.++.-+ ...|...|.|-.+-..++. |++
T Consensus 32 ~~~~~~Y~~~~~~~~~~vL~~Y~~-~-g-~v~~~~w~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~ 108 (285)
T PF01697_consen 32 VDHFYFYDNSSSPSVRKVLKEYER-S-G-YVEVIPWPLRPKFPDFPSPFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVA 108 (285)
T ss_pred CCEEEEEEccCCHHHHHhHHHHhh-c-C-eEEEEEcccccccCCcccchhhhhhHHHHHHHHHHHHHHHHHhhhhceEEE
Confidence 3456666666 667788888766 3 2 46666553 1236788888888887554 699
Q ss_pred EEcCCCCcC
Q psy5323 99 FLDSHCELG 107 (110)
Q Consensus 99 flD~d~~~~ 107 (110)
|+|-|...-
T Consensus 109 f~DiDE~lv 117 (285)
T PF01697_consen 109 FIDIDEFLV 117 (285)
T ss_pred EeccccEEE
Confidence 999997643
No 167
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=30.26 E-value=49 Score=23.99 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=31.2
Q ss_pred cEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCCCcCCC
Q psy5323 69 KVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCELGTN 109 (110)
Q Consensus 69 ~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~~~~~~ 109 (110)
+-+.++... +...|.+.|.++..-.++.++|+.+....|
T Consensus 144 ~R~~VHLS~--~~~~A~~vg~rh~~~pVvL~IDa~~l~~~G 182 (211)
T COG1859 144 KRRHVHLSA--DYETAKQVGLRHSGSPVVLEIDAESLREDG 182 (211)
T ss_pred cCceEEecC--CHHHHHHHhhccCCCcEEEEEehHHHHhCC
Confidence 345666654 799999999999999999999998765443
No 168
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=30.07 E-value=1.5e+02 Score=20.51 Aligned_cols=46 Identities=26% Similarity=0.399 Sum_probs=27.1
Q ss_pred EEEEecCCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHh
Q psy5323 18 VRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQ 63 (110)
Q Consensus 18 v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~ 63 (110)
++++......|...+...++....+.-|+++|+. --..++++.+++
T Consensus 86 v~~i~~~~~~g~~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~ 132 (251)
T cd06439 86 VKLLRFPERRGKAAALNRALALATGEIVVFTDANALLDPDALRLLVR 132 (251)
T ss_pred EEEEEcCCCCChHHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHH
Confidence 5555555555655555555554455667777777 334566766665
No 169
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=28.25 E-value=2e+02 Score=19.57 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=23.6
Q ss_pred CCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHh
Q psy5323 24 KERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQ 63 (110)
Q Consensus 24 ~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~ 63 (110)
..+.|...+...++....+.=|+++|+. .-..++++.++.
T Consensus 60 ~~~~g~~~a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~ 100 (235)
T cd06434 60 VPHPGKRRALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLK 100 (235)
T ss_pred cCCCChHHHHHHHHHHhCCCEEEEECCCceeChhHHHHHHH
Confidence 3444555554455554556667888887 444556666665
No 170
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=27.84 E-value=2e+02 Score=19.55 Aligned_cols=83 Identities=11% Similarity=0.032 Sum_probs=46.0
Q ss_pred EecCCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhcc--C-----CCcEEEEE------ccCCcchHHHHHH
Q psy5323 21 IRLKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTR--L-----PPKVRLIR------LKERAGLIRARIA 87 (110)
Q Consensus 21 i~~~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~--~-----~~~~~~i~------~~~~~G~~~arn~ 87 (110)
++..++..++...+..+......++++|-.... +.+..++... . ...++++. .+...|.+.|...
T Consensus 24 lpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gta~al~~ 101 (200)
T cd02508 24 VPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKS--RSLNDHLGSGKEWDLDRKNGGLFILPPQQRKGGDWYRGTADAIYQ 101 (200)
T ss_pred eEECCeeeeHHHHHHHHHHCCCCEEEEEeCCCh--HHHHHHHhCCCcccCCCCCCCEEEeCcccCCCCCcccCcHHHHHH
Confidence 344454345666666555555678888866611 1122222201 0 01244543 1345799999888
Q ss_pred HHHhcC---CCEEEEEcCCCC
Q psy5323 88 GAENAK---GDVLMFLDSHCE 105 (110)
Q Consensus 88 G~~~a~---g~~i~flD~d~~ 105 (110)
+..... .+.++++-+|..
T Consensus 102 a~~~i~~~~~~~~lv~~gD~v 122 (200)
T cd02508 102 NLDYIERSDPEYVLILSGDHI 122 (200)
T ss_pred HHHHHHhCCCCEEEEecCCEE
Confidence 887653 477778888864
No 171
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=27.43 E-value=2e+02 Score=20.34 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=42.5
Q ss_pred hHHHHHHHhcccccc-CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEcc----CCcchHHHHHHHHHhc----CCCEE
Q psy5323 27 AGLIRARIAGAENAK-GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLK----ERAGLIRARIAGAENA----KGDVL 97 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~-~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~----~~~G~~~arn~G~~~a----~g~~i 97 (110)
..++..++..+.... ..+|+|.-|.+. +..... ++...+.+.|.+ ...|...+...|+... ..+++
T Consensus 24 kpLi~~ti~~a~~s~~~d~IvVstd~~~----i~~~a~-~~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v 98 (222)
T TIGR03584 24 KPMIAYSIEAALNSGLFDKVVVSTDDEE----IAEVAK-SYGASVPFLRPKELADDFTGTAPVVKHAIEELKLQKQYDHA 98 (222)
T ss_pred cCHHHHHHHHHHhCCCCCEEEEeCCCHH----HHHHHH-HcCCEeEEeChHHHcCCCCCchHHHHHHHHHHhhcCCCCEE
Confidence 456666666655444 356665544322 222333 332123233322 2457778888888764 36899
Q ss_pred EEEcCCCCcC
Q psy5323 98 MFLDSHCELG 107 (110)
Q Consensus 98 ~flD~d~~~~ 107 (110)
+++++|..+-
T Consensus 99 ~~l~~tsPl~ 108 (222)
T TIGR03584 99 CCIYATAPFL 108 (222)
T ss_pred EEecCCCCcC
Confidence 9999998653
No 172
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=27.37 E-value=2.7e+02 Score=20.87 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=48.1
Q ss_pred ecCCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhc--cCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEE
Q psy5323 22 RLKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQT--RLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMF 99 (110)
Q Consensus 22 ~~~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~--~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~f 99 (110)
+..++ .++...++.+......+++++-... ....+..++.. .....+.++..+...|.+.|.-.+......+-+++
T Consensus 26 pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~al~~a~~~l~~~~~li 103 (353)
T TIGR01208 26 PVANK-PILQYAIEDLAEAGITDIGIVVGPV-TGEEIKEIVGEGERFGAKITYIVQGEPLGLAHAVYTARDFLGDDDFVV 103 (353)
T ss_pred EECCE-eHHHHHHHHHHHCCCCEEEEEeCCC-CHHHHHHHHhcccccCceEEEEECCCCCCHHHHHHHHHHhcCCCCEEE
Confidence 34455 6777777776655455776664442 12333444431 12223556665666799998888888765433445
Q ss_pred EcCCCCcC
Q psy5323 100 LDSHCELG 107 (110)
Q Consensus 100 lD~d~~~~ 107 (110)
+.+|..+.
T Consensus 104 ~~gD~~~~ 111 (353)
T TIGR01208 104 YLGDNLIQ 111 (353)
T ss_pred EECCeecC
Confidence 56776553
No 173
>PRK15384 type III secretion system protein; Provisional
Probab=26.74 E-value=53 Score=24.72 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=49.0
Q ss_pred CCEEEEEeCC-CCchHHHHHHHhccCC-CcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCCCc
Q psy5323 42 GDVLMFLDSH-YELQGKLDYYIQTRLP-PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCEL 106 (110)
Q Consensus 42 ~~EiivVDD~-d~t~~~l~~~~~~~~~-~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~~~ 106 (110)
.+++.++|-. +-..+|.++--+ ++. +.+-++..+++.-+..--|++.-...--+=+|+|+|..+
T Consensus 35 eY~l~~idektPilFQWFE~nP~-R~~k~evPIiNTk~~PYL~NiinaA~IE~eR~IGv~VDGdFs~ 100 (336)
T PRK15384 35 DYPLCFLDEKTPLLFQWFERNPA-RFGKNDIPIINTEKNPYLNNIIKAATIEKERLIGIFVDGDFFP 100 (336)
T ss_pred cccccccCCCCCeeeeeccCCHH-HhCCCCCceeecCcCchHHHhHhHhhhccccEEEEEEcCCcCh
Confidence 4788989888 778888887666 553 247788888888888888877766666677899998654
No 174
>PLN02190 cellulose synthase-like protein
Probab=26.68 E-value=1.3e+02 Score=25.91 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=32.2
Q ss_pred cCCCcEEEEEccCCcc-----hHHHHHHHHHh----cCCCEEEEEcCCCCcC
Q psy5323 65 RLPPKVRLIRLKERAG-----LIRARIAGAEN----AKGDVLMFLDSHCELG 107 (110)
Q Consensus 65 ~~~~~~~~i~~~~~~G-----~~~arn~G~~~----a~g~~i~flD~d~~~~ 107 (110)
+.| .+-++..+++.| .++|.|.-++. ..|.+|.-+|+|-.+.
T Consensus 250 ~lP-~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~N 300 (756)
T PLN02190 250 EVP-HLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYAN 300 (756)
T ss_pred cCc-eEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccC
Confidence 455 677777777776 67788877755 5899999999998653
No 175
>PLN02436 cellulose synthase A
Probab=26.51 E-value=1.2e+02 Score=27.42 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=33.2
Q ss_pred cCCCcEEEEEccCCcc-----hHHHHHHHHHh----cCCCEEEEEcCCCCcC
Q psy5323 65 RLPPKVRLIRLKERAG-----LIRARIAGAEN----AKGDVLMFLDSHCELG 107 (110)
Q Consensus 65 ~~~~~~~~i~~~~~~G-----~~~arn~G~~~----a~g~~i~flD~d~~~~ 107 (110)
..| .+.++..+++.| .++|.|.-++. ..|.||.-+|+|-.+.
T Consensus 530 ~LP-~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiN 580 (1094)
T PLN02436 530 ELP-RLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYIN 580 (1094)
T ss_pred cCc-eEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccccccC
Confidence 455 677887787776 68889988884 5899999999998653
No 176
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.72 E-value=2e+02 Score=18.95 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=23.9
Q ss_pred CCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 51 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~ 51 (110)
|..+.++.+.+..|...+...++....+.=|+++|+.
T Consensus 53 ~~~~~~~~~~~~~G~~~~~n~g~~~~~g~~v~~ld~D 89 (214)
T cd04196 53 PFIIILIRNGKNLGVARNFESLLQAADGDYVFFCDQD 89 (214)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHhCCCCEEEEECCC
Confidence 4445566666677777776666655555667777755
No 177
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.43 E-value=3.3e+02 Score=21.19 Aligned_cols=60 Identities=12% Similarity=0.013 Sum_probs=39.4
Q ss_pred hHHHHHHhhhCCCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC---CCchHHHHHHHh
Q psy5323 4 GKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH---YELQGKLDYYIQ 63 (110)
Q Consensus 4 ~~l~~~~~~~lp~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~---d~t~~~l~~~~~ 63 (110)
+|+.--+...-|..|.++.+.+....+......+......+.+++.|. ......+...+.
T Consensus 1 ePi~~sI~~~~Pd~V~f~~S~~s~~~~~~i~~~l~~~~~~~~~~~~d~dD~~~~y~~l~~~l~ 63 (379)
T PF09670_consen 1 EPIVLSIRELRPDRVVFFCSEESKPKAEQIRQQLGLSPDQEEIVIVDPDDPLECYRKLREVLE 63 (379)
T ss_pred ChHHHHHHHcCCCEEEEEecccchhhHHHHHHHHhcccCCceEeeCCCCCHHHHHHHHHHHHH
Confidence 466777776668889999988888877776665554444466667776 233444555554
No 178
>PHA02518 ParA-like protein; Provisional
Probab=25.39 E-value=2e+02 Score=19.36 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=22.2
Q ss_pred EEEccCCcchHH-HHHHHHHhc-CCCEEEEEcCCCCc
Q psy5323 72 LIRLKERAGLIR-ARIAGAENA-KGDVLMFLDSHCEL 106 (110)
Q Consensus 72 ~i~~~~~~G~~~-arn~G~~~a-~g~~i~flD~d~~~ 106 (110)
+...+...|... |.|.+...+ .|.=+..+|.|...
T Consensus 5 v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 5 VLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred EEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 333344445443 778777666 57778889988653
No 179
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=24.56 E-value=2.6e+02 Score=20.47 Aligned_cols=70 Identities=11% Similarity=0.023 Sum_probs=37.6
Q ss_pred HhccccccCCEEEEE--eCC-CCchHHHHH--HHhccCCCcEEEEEccCCcch------HHHHHHHHHhcCCCEEEEEcC
Q psy5323 34 IAGAENAKGDVLMFL--DSH-YELQGKLDY--YIQTRLPPKVRLIRLKERAGL------IRARIAGAENAKGDVLMFLDS 102 (110)
Q Consensus 34 l~~~~~~~~~EiivV--DD~-d~t~~~l~~--~~~~~~~~~~~~i~~~~~~G~------~~arn~G~~~a~g~~i~flD~ 102 (110)
|....+..+.||+.- ||- ....+.+.+ -+. .. +++.+..+.-.+. ..-+-.++-.++-+=++||||
T Consensus 23 LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~~q~v~-~v--d~~~~~~~~~~~~~~~~~~~~~K~lA~l~ssFeevllLDa 99 (271)
T PF11051_consen 23 LRRLGNTLPIEIIYPGDDDLSKEFCEKLLPDQDVW-FV--DASCVIDPDYLGKSFSKKGFQNKWLALLFSSFEEVLLLDA 99 (271)
T ss_pred HHHhCCCCCEEEEeCCccccCHHHHHHHhhhhhhh-ee--cceEEeeccccccccccCCchhhhhhhhhCCcceEEEEcC
Confidence 444445568899988 444 333333333 000 11 1232222222222 224456677888899999999
Q ss_pred CCCc
Q psy5323 103 HCEL 106 (110)
Q Consensus 103 d~~~ 106 (110)
|..+
T Consensus 100 D~vp 103 (271)
T PF11051_consen 100 DNVP 103 (271)
T ss_pred Cccc
Confidence 9875
No 180
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=24.31 E-value=3.3e+02 Score=20.87 Aligned_cols=73 Identities=7% Similarity=0.068 Sum_probs=44.1
Q ss_pred CchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccC-CcchHHHHHHHHHhcCCCEEEEEcCC
Q psy5323 25 ERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKE-RAGLIRARIAGAENAKGDVLMFLDSH 103 (110)
Q Consensus 25 ~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~-~~G~~~arn~G~~~a~g~~i~flD~d 103 (110)
+...++...+..+... ..+++++-..+.. ..+ . .. +++++.... ..|...+...|++.+..+++.|+=+|
T Consensus 198 ~Gk~ll~~~l~~l~~~-~~~vvV~~~~~~~----~~~-~-~~--~v~~i~d~~~~~Gpl~gi~~al~~~~~~~~lv~~~D 268 (369)
T PRK14490 198 HESNQLVHTAALLRPH-CQEVFISCRAEQA----EQY-R-SF--GIPLITDSYLDIGPLGGLLSAQRHHPDAAWLVVACD 268 (369)
T ss_pred CCccHHHHHHHHHHhh-CCEEEEEeCCchh----hHH-h-hc--CCcEEeCCCCCCCcHHHHHHHHHhCCCCcEEEEeCC
Confidence 3456677766665433 4566654322211 111 1 11 466665443 46888888889988888888888888
Q ss_pred CCc
Q psy5323 104 CEL 106 (110)
Q Consensus 104 ~~~ 106 (110)
..+
T Consensus 269 mP~ 271 (369)
T PRK14490 269 LPF 271 (369)
T ss_pred cCC
Confidence 764
No 181
>PF09886 DUF2113: Uncharacterized protein conserved in archaea (DUF2113); InterPro: IPR016762 There is currently no experimental data for members of this group or their homologues. Based on distant sequence similarity, they may be tentatively predicted to be nucleic acid-binding proteins, they are also likely to be linked to methanogenesis or a process closely connected to it.
Probab=23.96 E-value=1.3e+02 Score=21.37 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=30.5
Q ss_pred EEEeCC-CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 46 MFLDSH-YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 46 ivVDD~-d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
++|+|. ++....+-.++..=.|.+.|+.++. ..|+-++|+-|+....+.|
T Consensus 124 lvV~Dp~~~l~~~v~da~~RI~PEGFRVr~~~---------------~~~~~f~~vASE~~i~~ew 174 (188)
T PF09886_consen 124 LVVYDPSEDLKKKVYDAMFRIAPEGFRVRRHY---------------YEGNSFAFVASEETIKDEW 174 (188)
T ss_pred cEEECcHHHHHHHHHHHHHHhCCCccEEeecc---------------ccCCeEEEEECCCCCCHHH
Confidence 345555 4444434334431446677777643 4577889998888887776
No 182
>PHA01631 hypothetical protein
Probab=23.21 E-value=53 Score=23.04 Aligned_cols=61 Identities=13% Similarity=0.234 Sum_probs=33.9
Q ss_pred CCEEEEEeCC-CCchHHHHHHHhccCCCcEEEEEccCCcc-----hHHHHHHH---HHhcCCCEEEEEcCCCCcCC
Q psy5323 42 GDVLMFLDSH-YELQGKLDYYIQTRLPPKVRLIRLKERAG-----LIRARIAG---AENAKGDVLMFLDSHCELGT 108 (110)
Q Consensus 42 ~~EiivVDD~-d~t~~~l~~~~~~~~~~~~~~i~~~~~~G-----~~~arn~G---~~~a~g~~i~flD~d~~~~~ 108 (110)
.+..++|||. ....+- .+. ++ ..++++...|.- ++.-.-.- ++...-|+++|+|||..+.+
T Consensus 17 ~~D~V~VD~~~~~~~~c---~~~-~~--~~~Ii~~~t~~e~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn 86 (176)
T PHA01631 17 DFDYVVVDKTFNDMTEC---QIP-KY--QEKIIWIMTNTEIRWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPN 86 (176)
T ss_pred cccEEEEcccccccccc---ccc-cc--CCceEEecccchhHHHHHHHHHHHHHHhhccCCccEEEEeccceEecC
Confidence 5788999998 432121 112 33 245566555431 12222222 23467889999999987643
No 183
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=23.08 E-value=2.1e+02 Score=19.85 Aligned_cols=30 Identities=7% Similarity=0.122 Sum_probs=15.1
Q ss_pred EEEEeCCCC-chHHHHHHHhccCCCcEEEEEcc
Q psy5323 45 LMFLDSHYE-LQGKLDYYIQTRLPPKVRLIRLK 76 (110)
Q Consensus 45 iivVDD~d~-t~~~l~~~~~~~~~~~~~~i~~~ 76 (110)
|++||.+|. |..+++ ++++.. ..+++++..
T Consensus 2 il~idn~dsft~nl~~-~l~~~g-~~v~v~~~~ 32 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQ-FLGELG-QELVVKRND 32 (195)
T ss_pred EEEEeCCCccHHHHHH-HHHHCC-CcEEEEeCC
Confidence 456666643 444333 444132 257777654
No 184
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=22.84 E-value=2.7e+02 Score=19.37 Aligned_cols=47 Identities=26% Similarity=0.371 Sum_probs=25.3
Q ss_pred eEEEEecCCchHHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHh
Q psy5323 17 KVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQ 63 (110)
Q Consensus 17 ~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~ 63 (110)
.+.++......|.-.+...++....+.-|+++|+. .....+++.++.
T Consensus 69 ~v~~~~~~~n~G~~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~ 116 (243)
T PLN02726 69 RILLRPRPGKLGLGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIK 116 (243)
T ss_pred cEEEEecCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHH
Confidence 34555545445555554455544455666777766 334455555554
No 185
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=22.81 E-value=1.7e+02 Score=26.36 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=33.4
Q ss_pred cCCCcEEEEEccCCcc-----hHHHHHHHHHhc----CCCEEEEEcCCCCcC
Q psy5323 65 RLPPKVRLIRLKERAG-----LIRARIAGAENA----KGDVLMFLDSHCELG 107 (110)
Q Consensus 65 ~~~~~~~~i~~~~~~G-----~~~arn~G~~~a----~g~~i~flD~d~~~~ 107 (110)
..| .+-++..+++.| .++|.|.=++.+ .|.||.-+|+|-.+.
T Consensus 452 ~lP-~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~N 502 (1044)
T PLN02915 452 ELP-RLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYIN 502 (1044)
T ss_pred ccc-eeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccC
Confidence 345 677777777776 688888888887 899999999997754
No 186
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=22.30 E-value=1e+02 Score=23.01 Aligned_cols=64 Identities=31% Similarity=0.439 Sum_probs=30.3
Q ss_pred HHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCC
Q psy5323 32 ARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 103 (110)
Q Consensus 32 ~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d 103 (110)
+++.++...-..||+|-|.|+.-..++. . ..|+++++++-.. -.-....|+. .+-|-++|+==|
T Consensus 41 Aaiega~~aGa~eVvV~DsHg~~~Nl~~---~-~L~~~~~LI~G~~---rp~~Mm~Gld-~~~Dav~fiGYH 104 (265)
T PF04951_consen 41 AAIEGAFEAGATEVVVNDSHGSMRNLLP---E-ELPPRARLIRGSP---RPLSMMEGLD-ESFDAVFFIGYH 104 (265)
T ss_dssp HHHHHHHHTT-SEEEEEE-STTS--S-T---T-TS-TTSEEEEES-----TTGGGTT---TT-SEEEEEEE-
T ss_pred HHHHHHHhcCCeEEEEEecCCCCCCcCh---H-HCCcCeEEEeCCC---Ccchhhhccc-cCcCEEEEEecC
Confidence 4555555555689998888833223332 2 4555899998422 1223344552 345556665433
No 187
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=22.17 E-value=35 Score=30.11 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=27.8
Q ss_pred hHHHHHHhhhCCCeEEEEecCCchHHHHHHHhccccc
Q psy5323 4 GKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENA 40 (110)
Q Consensus 4 ~~l~~~~~~~lp~~v~ii~~~~~~~~i~~~l~~~~~~ 40 (110)
+++...-+ -||.-|++.+++.|+.++.++++.+...
T Consensus 304 ~kl~elk~-~LP~gVki~~~ydRs~lid~AI~tv~k~ 339 (1027)
T COG3696 304 EKLEELKK-SLPEGVKIVTTYDRSELIDKAIDTVSKT 339 (1027)
T ss_pred HHHHHHHh-hCCCCcEEEEEeeHHHHHHHHHHHHHHH
Confidence 34444444 5899999999999999999988876543
No 188
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=22.10 E-value=3.7e+02 Score=20.62 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=52.5
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhc--cCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQT--RLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCE 105 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~--~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~~ 105 (110)
.++.-.+..+..+.-.|++++-.. ..+.+++++.. ..+.++.++......|.+.|.-.......++-++++.+|..
T Consensus 33 Pii~~~l~~L~~~Gv~eivi~~~y--~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~~~~f~v~~GDv~ 110 (358)
T COG1208 33 PLIEYVLEALAAAGVEEIVLVVGY--LGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGGDDFLVLNGDVL 110 (358)
T ss_pred cHHHHHHHHHHHCCCcEEEEEecc--chHHHHHHHhcccccCCceEEEecCCcCccHHHHHHHHHhcCCCcEEEEECCee
Confidence 456666666666666788877222 22333344431 22346888888888999999999999998777777777765
Q ss_pred cC
Q psy5323 106 LG 107 (110)
Q Consensus 106 ~~ 107 (110)
..
T Consensus 111 ~~ 112 (358)
T COG1208 111 TD 112 (358)
T ss_pred ec
Confidence 43
No 189
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=22.02 E-value=2.8e+02 Score=19.21 Aligned_cols=83 Identities=14% Similarity=-0.020 Sum_probs=43.8
Q ss_pred ecCCchHHHHHHHhccccccCCEEEEEeCC--CCchHHHHHHHh--ccCCCcEEE--EEccCCcchHHHHHHHHHhcCCC
Q psy5323 22 RLKERAGLIRARIAGAENAKGDVLMFLDSH--YELQGKLDYYIQ--TRLPPKVRL--IRLKERAGLIRARIAGAENAKGD 95 (110)
Q Consensus 22 ~~~~~~~~i~~~l~~~~~~~~~EiivVDD~--d~t~~~l~~~~~--~~~~~~~~~--i~~~~~~G~~~arn~G~~~a~g~ 95 (110)
+..++ .++...++.+......++++|-.. ......+..... ......+.+ .......|.+.|...+.....++
T Consensus 27 pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~~l~~~~~~i~~d 105 (216)
T cd02507 27 PVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRGLIRSD 105 (216)
T ss_pred eECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEEEEccCCCCCccHHHHHHHhhcCCCC
Confidence 44454 566666666655445667666555 222222221100 000112333 33446778888888887777776
Q ss_pred EEEEEcCCCCc
Q psy5323 96 VLMFLDSHCEL 106 (110)
Q Consensus 96 ~i~flD~d~~~ 106 (110)
+ +++.+|...
T Consensus 106 f-lv~~gD~i~ 115 (216)
T cd02507 106 F-LLLSCDLVS 115 (216)
T ss_pred E-EEEeCCEee
Confidence 4 557777654
No 190
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=21.85 E-value=3.4e+02 Score=20.15 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=33.3
Q ss_pred eEEEEe-cCCchHHHHHHHhccccccCCEEEEEeCC-----CCchHHHHHHHh---ccCCCcEEEEEccCC
Q psy5323 17 KVRLIR-LKERAGLIRARIAGAENAKGDVLMFLDSH-----YELQGKLDYYIQ---TRLPPKVRLIRLKER 78 (110)
Q Consensus 17 ~v~ii~-~~~~~~~i~~~l~~~~~~~~~EiivVDD~-----d~t~~~l~~~~~---~~~~~~~~~i~~~~~ 78 (110)
..++|. ..+.-..+...+.-+......-|||+||- |.....+...+. +.-|.++.++-...+
T Consensus 80 GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 80 GLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred CceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 345554 23334445555555555556889999998 223444444443 133556666554443
No 191
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=21.80 E-value=2.6e+02 Score=19.31 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=20.4
Q ss_pred cCCcchHH-HHHHHHHhc--CCCEEEEEcCCCC
Q psy5323 76 KERAGLIR-ARIAGAENA--KGDVLMFLDSHCE 105 (110)
Q Consensus 76 ~~~~G~~~-arn~G~~~a--~g~~i~flD~d~~ 105 (110)
+...|.+. |.|.+...| .|.=+..+|+|..
T Consensus 44 kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 44 LPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 34445444 778777766 3777888888865
No 192
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=21.77 E-value=2.7e+02 Score=19.02 Aligned_cols=72 Identities=13% Similarity=0.060 Sum_probs=41.2
Q ss_pred hHHHHHHHhccccccCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhc-CCCEEEEEcCC
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENA-KGDVLMFLDSH 103 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a-~g~~i~flD~d 103 (110)
..++...+..+......+|+++-.. +.+ ..++.... ..+. .....|...+...|++.. ..+.++++-+|
T Consensus 27 kplI~~vi~~l~~~~i~~I~Vv~~~~~~~~----~~~l~~~~---~~~~-~~~g~G~~~~l~~al~~~~~~~~~lv~~~D 98 (183)
T TIGR00454 27 RCLIDHVLSPLLKSKVNNIIIATSPHTPKT----EEYINSAY---KDYK-NASGKGYIEDLNECIGELYFSEPFLVVSSD 98 (183)
T ss_pred EEHHHHHHHHHHhCCCCEEEEEeCCCHHHH----HHHHhhcC---cEEE-ecCCCCHHHHHHHHhhcccCCCCEEEEeCC
Confidence 3566666665543334566665433 333 33333121 2223 345578888999999853 35678888888
Q ss_pred CCc
Q psy5323 104 CEL 106 (110)
Q Consensus 104 ~~~ 106 (110)
...
T Consensus 99 ~P~ 101 (183)
T TIGR00454 99 LIN 101 (183)
T ss_pred cCc
Confidence 763
No 193
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=21.64 E-value=1.7e+02 Score=21.88 Aligned_cols=65 Identities=20% Similarity=0.239 Sum_probs=36.2
Q ss_pred HHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCC
Q psy5323 32 ARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHC 104 (110)
Q Consensus 32 ~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~ 104 (110)
+++.++......||+|-|.|..-..++.+ ..++++++++-..+ .-....|+.. +-|-++|+==|.
T Consensus 41 Aaiega~~aGa~eIvV~DsHg~~~Nl~~e----~L~~~a~LI~G~pr---p~~Mm~Gld~-s~D~v~fiGYHa 105 (270)
T cd08769 41 AVLEELFESGFEEIVVADSHGRMDNIDYE----ELDPRVSLVSGYPR---PLSMMTGLDE-SFDAVLFIGYHA 105 (270)
T ss_pred HHHHHHHHcCCcEEEEEcCCCCcCCCChH----HCCcceEEEecCCC---CchHhhcccc-CccEEEEEecCC
Confidence 45555555556898888888332233332 33348999974432 2234455552 456667765454
No 194
>PLN02400 cellulose synthase
Probab=21.64 E-value=1.8e+02 Score=26.27 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=32.1
Q ss_pred CCCcEEEEEccCCcc-----hHHHHHHHHH----hcCCCEEEEEcCCCCcC
Q psy5323 66 LPPKVRLIRLKERAG-----LIRARIAGAE----NAKGDVLMFLDSHCELG 107 (110)
Q Consensus 66 ~~~~~~~i~~~~~~G-----~~~arn~G~~----~a~g~~i~flD~d~~~~ 107 (110)
.| .+.++..+++.| .++|.|.=++ ...|.||.-+|+|-.+.
T Consensus 522 LP-~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~N 571 (1085)
T PLN02400 522 LP-RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFN 571 (1085)
T ss_pred Cc-eeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccC
Confidence 44 677787787776 6788888777 45899999999998753
No 195
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=21.43 E-value=99 Score=22.43 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=19.5
Q ss_pred HHHHHHHHHhc----CCCEEEEEcCCCCcCCC
Q psy5323 82 IRARIAGAENA----KGDVLMFLDSHCELGTN 109 (110)
Q Consensus 82 ~~arn~G~~~a----~g~~i~flD~d~~~~~~ 109 (110)
+...|.|+..| ..++++|-|-|..+..+
T Consensus 51 ~~llNvG~~~a~k~~~~dc~i~hDVDllP~~~ 82 (219)
T cd00899 51 AKLLNVGFLEALKDGDWDCFIFHDVDLLPEND 82 (219)
T ss_pred hhhhhHHHHHHhhcCCccEEEEecccccccCc
Confidence 34556666665 35689999999887654
No 196
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=21.25 E-value=4.3e+02 Score=21.09 Aligned_cols=78 Identities=8% Similarity=-0.008 Sum_probs=39.5
Q ss_pred hHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCC-cEEEEEccCCcchHHHHHHHHHhc----C-CCEEEEE
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPP-KVRLIRLKERAGLIRARIAGAENA----K-GDVLMFL 100 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~-~~~~i~~~~~~G~~~arn~G~~~a----~-g~~i~fl 100 (110)
..++..++..+......++++|-... ....+...+. .+.. ..+++..+...|.+.|.-.++... . .++++++
T Consensus 33 ~~ll~~tl~~l~~~~~~~iviv~~~~-~~~~~~~~l~-~~~~~~~~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl 110 (468)
T TIGR01479 33 LTMLQQTLKRLAGLPCSSPLVICNEE-HRFIVAEQLR-EIGKLASNIILEPVGRNTAPAIALAALLAARRNGEDPLLLVL 110 (468)
T ss_pred CcHHHHHHHHHhcCCCcCcEEecCHH-HHHHHHHHHH-HcCCCcceEEecccccCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 45666666655443345666553221 1122333333 3211 245666676667776655544433 2 4567777
Q ss_pred cCCCCc
Q psy5323 101 DSHCEL 106 (110)
Q Consensus 101 D~d~~~ 106 (110)
-+|...
T Consensus 111 ~~D~~i 116 (468)
T TIGR01479 111 AADHVI 116 (468)
T ss_pred cCceee
Confidence 777543
No 197
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=21.21 E-value=63 Score=23.59 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=11.9
Q ss_pred cCCCEEEEEcCCCCc
Q psy5323 92 AKGDVLMFLDSHCEL 106 (110)
Q Consensus 92 a~g~~i~flD~d~~~ 106 (110)
-.-+|+.|+|+|.-+
T Consensus 40 ~~~~~vlflDaDigV 54 (222)
T PF03314_consen 40 PEYDWVLFLDADIGV 54 (222)
T ss_pred ccCCEEEEEcCCcee
Confidence 345799999999864
No 198
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=21.07 E-value=1.9e+02 Score=22.05 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=32.3
Q ss_pred cEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCCCcC
Q psy5323 69 KVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCELG 107 (110)
Q Consensus 69 ~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~~~~ 107 (110)
++.++|+++-.|++.|.-.|=....++-++.+=+|+.+.
T Consensus 98 ~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~ 136 (291)
T COG1210 98 TISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVD 136 (291)
T ss_pred eEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeec
Confidence 578999999999999999999999999666666665543
No 199
>KOG3765|consensus
Probab=20.91 E-value=92 Score=24.56 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCCCEEEEEcCCCCcCCC
Q psy5323 81 LIRARIAGAENAKGDVLMFLDSHCELGTN 109 (110)
Q Consensus 81 ~~~arn~G~~~a~g~~i~flD~d~~~~~~ 109 (110)
..-.||.|-+.|+++|+...|.|..++.|
T Consensus 179 ~Nl~RNvAr~ga~t~~~l~sD~dm~~S~g 207 (386)
T KOG3765|consen 179 FNLMRNVARKGANTDYMLMSDIDMVPSYG 207 (386)
T ss_pred hHHHHHHHHhhcCCCcEEEEeeeeeeccc
Confidence 67789999999999999999999987765
No 200
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=20.88 E-value=3.2e+02 Score=19.44 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCCEEEEEcCCCCcCC
Q psy5323 84 ARIAGAENAKGDVLMFLDSHCELGT 108 (110)
Q Consensus 84 arn~G~~~a~g~~i~flD~d~~~~~ 108 (110)
.|-..+....-+-++++|+|+.+..
T Consensus 80 ~kl~~~~l~~~drvlylD~D~~v~~ 104 (240)
T cd02537 80 TKLRLWNLTEYDKVVFLDADTLVLR 104 (240)
T ss_pred HHHHhccccccceEEEEeCCeeEcc
Confidence 4444555556778999999998653
No 201
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=20.57 E-value=2.8e+02 Score=19.73 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=27.5
Q ss_pred eEEEEecCCchHHHHHHHhccccc---cCCEEEEEeCC-CCchHHHHHHH
Q psy5323 17 KVRLIRLKERAGLIRARIAGAENA---KGDVLMFLDSH-YELQGKLDYYI 62 (110)
Q Consensus 17 ~v~ii~~~~~~~~i~~~l~~~~~~---~~~EiivVDD~-d~t~~~l~~~~ 62 (110)
.++++++.+..|+-.+.-.++... ...=|+++||. --..+.++.++
T Consensus 46 ~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~~~~~~~l~~l~ 95 (281)
T TIGR01556 46 KIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQDSRPGNAFLAAQW 95 (281)
T ss_pred CeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
Confidence 467777776777777666565433 34557778887 22344554444
No 202
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=20.33 E-value=2.6e+02 Score=19.10 Aligned_cols=7 Identities=29% Similarity=0.207 Sum_probs=3.2
Q ss_pred cEEEEEc
Q psy5323 69 KVRLIRL 75 (110)
Q Consensus 69 ~~~~i~~ 75 (110)
.+.++++
T Consensus 25 ~~~v~~~ 31 (191)
T PRK06774 25 EVMVKRN 31 (191)
T ss_pred cEEEEeC
Confidence 3444443
No 203
>cd06062 H2MP_MemB-H2up Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.
Probab=20.22 E-value=2.5e+02 Score=18.41 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=6.5
Q ss_pred CCCEEEEEcC
Q psy5323 93 KGDVLMFLDS 102 (110)
Q Consensus 93 ~g~~i~flD~ 102 (110)
..+.++|+||
T Consensus 52 ~~d~viiVDA 61 (146)
T cd06062 52 EADRLIIVDA 61 (146)
T ss_pred cCCEEEEEEc
Confidence 4566666666
No 204
>PRK06683 hypothetical protein; Provisional
Probab=20.18 E-value=1.5e+02 Score=17.88 Aligned_cols=49 Identities=6% Similarity=0.058 Sum_probs=28.9
Q ss_pred HHhccccccCCEEEEEeCC-CCchHHHHHHHhccCCCcEEEEEccCCcchHHH
Q psy5323 33 RIAGAENAKGDVLMFLDSH-YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRA 84 (110)
Q Consensus 33 ~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~a 84 (110)
++..+......-+++-.|+ +.+...+..+.. .+. +.++..+...-++.|
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~-~~~--Vpv~~~~t~~eLG~A 68 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTAL-QHN--IPITKVESVRKLGKV 68 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHH-hcC--CCEEEECCHHHHHHH
Confidence 3444444456778888899 777777776665 443 444443443444444
Done!