Query psy5323
Match_columns 110
No_of_seqs 162 out of 1165
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 23:42:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bcv_A Putative glycosyltransf 99.8 1E-20 3.5E-25 132.6 10.5 94 14-110 4-101 (240)
2 1xhb_A Polypeptide N-acetylgal 99.8 4.9E-19 1.7E-23 136.2 11.4 97 13-110 27-131 (472)
3 2d7i_A Polypeptide N-acetylgal 99.8 5.5E-19 1.9E-23 139.8 10.6 96 13-110 110-213 (570)
4 1qg8_A Protein (spore coat pol 99.8 2.6E-19 8.8E-24 126.6 7.5 93 15-110 1-105 (255)
5 2ffu_A Ppgalnact-2, polypeptid 99.7 3.9E-18 1.3E-22 132.4 9.8 93 13-110 64-163 (501)
6 3l7i_A Teichoic acid biosynthe 99.7 2.7E-19 9.3E-24 144.5 0.0 96 14-110 1-100 (729)
7 2z86_A Chondroitin synthase; G 99.7 8.2E-17 2.8E-21 127.3 9.4 94 14-110 374-471 (625)
8 3ckj_A Putative uncharacterize 99.7 1.7E-17 5.7E-22 123.1 4.7 96 14-110 47-149 (329)
9 3f1y_A Mannosyl-3-phosphoglyce 99.6 6.3E-17 2.1E-21 123.4 4.1 97 13-110 92-197 (387)
10 2z86_A Chondroitin synthase; G 99.6 6.1E-15 2.1E-19 116.6 9.8 94 14-110 92-191 (625)
11 4fix_A UDP-galactofuranosyl tr 99.5 1.3E-14 4.5E-19 116.9 7.6 94 15-110 180-285 (657)
12 2nxv_A ATP synthase subunits r 99.4 2.4E-13 8.2E-18 97.2 7.4 70 17-110 17-91 (249)
13 4hg6_A Cellulose synthase subu 99.4 3.7E-13 1.3E-17 110.2 7.6 95 13-110 138-255 (802)
14 2wvl_A Mannosyl-3-phosphoglyce 99.2 4.1E-11 1.4E-15 90.7 9.7 87 15-106 53-172 (391)
15 2fy7_A Beta-1,4-galactosyltran 99.2 1.4E-11 4.7E-16 90.6 6.5 71 16-110 66-146 (287)
16 2bo4_A Mannosylglycerate synth 99.2 1.9E-11 6.6E-16 93.6 7.0 89 18-109 3-109 (397)
17 2zu9_A Mannosyl-3-phosphoglyce 99.0 3.9E-09 1.3E-13 80.7 10.8 86 16-104 52-171 (394)
18 1fo8_A Alpha-1,3-mannosyl-glyc 98.5 1.3E-07 4.5E-12 71.1 6.0 88 17-110 4-116 (343)
19 2d0j_A Galactosylgalactosylxyl 94.6 0.56 1.9E-05 33.6 10.4 92 14-107 2-114 (246)
20 3cu0_A Galactosylgalactosylxyl 92.9 1 3.5E-05 32.8 9.2 92 14-107 20-146 (281)
21 1v84_A Galactosylgalactosylxyl 91.1 1.4 4.9E-05 31.6 8.1 93 14-107 2-120 (253)
22 2c0n_A A197; thermophil protei 90.5 0.5 1.7E-05 32.9 5.1 37 69-107 27-70 (203)
23 1xhb_A Polypeptide N-acetylgal 89.9 0.44 1.5E-05 36.0 4.8 48 3-51 77-124 (472)
24 2waw_A MOBA relate protein; un 89.0 1.7 5.8E-05 28.4 6.8 74 28-106 32-108 (199)
25 2wee_A MOBA-related protein; u 88.2 2.4 8.2E-05 27.6 7.1 74 28-106 32-108 (197)
26 1h7e_A 3-deoxy-manno-octuloson 86.2 6 0.00021 26.8 8.8 71 28-106 28-101 (245)
27 2e8b_A Probable molybdopterin- 85.2 5.6 0.00019 26.4 7.8 68 28-106 41-109 (201)
28 4fce_A Bifunctional protein GL 82.6 5.1 0.00018 29.8 7.3 73 28-105 37-110 (459)
29 2y6p_A 3-deoxy-manno-octuloson 81.4 8.4 0.00029 25.7 7.5 69 28-106 28-98 (234)
30 3oam_A 3-deoxy-manno-octuloson 79.4 13 0.00044 25.6 8.0 70 29-106 29-103 (252)
31 2d7i_A Polypeptide N-acetylgal 78.7 1.7 5.8E-05 34.0 3.5 47 3-51 160-206 (570)
32 4ecm_A Glucose-1-phosphate thy 78.4 5.2 0.00018 27.8 5.7 79 27-106 55-135 (269)
33 3tqd_A 3-deoxy-manno-octuloson 78.0 15 0.00052 25.7 8.5 70 29-106 36-110 (256)
34 2v0h_A Bifunctional protein GL 77.5 11 0.00039 27.8 7.7 73 28-105 34-107 (456)
35 3st8_A Bifunctional protein GL 76.9 7.9 0.00027 29.5 6.8 80 24-105 38-122 (501)
36 1ezi_A CMP-N-acetylneuraminic 75.8 15 0.00051 24.5 7.6 72 28-106 30-109 (228)
37 3juk_A UDP-glucose pyrophospho 74.5 5.4 0.00018 27.8 5.0 81 24-107 31-134 (281)
38 1hm9_A GLMU, UDP-N-acetylgluco 73.7 14 0.00049 27.4 7.4 72 28-105 40-113 (468)
39 3k8d_A 3-deoxy-manno-octuloson 73.0 21 0.00073 25.0 7.9 70 29-106 45-119 (264)
40 2ux8_A Glucose-1-phosphate uri 72.8 19 0.00067 25.2 7.6 39 69-107 107-145 (297)
41 1qwj_A Cytidine monophospho-N- 72.7 15 0.00053 24.6 6.8 72 28-106 29-107 (229)
42 3d5n_A Q97W15_sulso; NESG, SSR 69.3 19 0.00066 23.6 6.6 70 27-106 28-99 (197)
43 4fcu_A 3-deoxy-manno-octuloson 68.9 26 0.0009 24.3 8.5 71 28-106 27-103 (253)
44 2i5e_A Hypothetical protein MM 67.7 21 0.00073 23.6 6.6 65 29-106 35-100 (211)
45 2xme_A CTP-inositol-1-phosphat 67.2 24 0.00082 23.6 6.8 74 28-106 46-120 (232)
46 2ffu_A Ppgalnact-2, polypeptid 65.1 4.7 0.00016 30.6 3.1 35 17-51 122-156 (501)
47 3f1c_A Putative 2-C-methyl-D-e 64.1 28 0.00096 23.7 6.8 74 28-106 33-117 (246)
48 3tzt_A Glycosyl transferase fa 63.2 36 0.0012 23.9 7.8 86 23-109 13-116 (276)
49 4evw_A Nucleoside-diphosphate- 62.9 34 0.0012 23.5 7.7 81 24-106 28-118 (255)
50 2e3d_A UTP--glucose-1-phosphat 60.8 40 0.0014 23.5 8.0 39 69-107 103-141 (302)
51 1g9r_A Glycosyl transferase; a 59.9 28 0.00095 24.8 6.3 85 23-108 8-110 (311)
52 1vgw_A 4-diphosphocytidyl-2C-m 59.9 34 0.0012 22.5 8.8 74 27-106 34-116 (231)
53 1omz_A Alpha-1,4-N-acetylhexos 59.0 27 0.00091 25.4 6.0 88 16-107 29-120 (293)
54 1i52_A 4-diphosphocytidyl-2-C- 58.8 37 0.0013 22.6 7.5 72 28-106 36-111 (236)
55 2yc3_A 2-C-methyl-D-erythritol 58.5 27 0.00092 23.1 5.8 74 28-105 33-109 (228)
56 1e5k_A Molybdopterin-guanine d 56.8 16 0.00054 24.2 4.3 68 28-105 34-103 (201)
57 3ngw_A Molybdopterin-guanine d 54.1 46 0.0016 22.2 7.7 69 27-106 26-95 (208)
58 1w55_A ISPD/ISPF bifunctional 52.0 53 0.0018 24.3 6.9 70 27-106 31-101 (371)
59 1vic_A 3-deoxy-manno-octuloson 52.0 53 0.0018 22.3 8.8 71 28-106 28-103 (262)
60 3rsb_A Adenosylcobinamide-phos 48.4 3.9 0.00013 26.8 0.1 74 28-105 28-103 (196)
61 2qh5_A PMI, ALGA, mannose-6-ph 47.2 72 0.0024 22.4 8.7 78 26-106 36-116 (308)
62 2pa4_A UTP-glucose-1-phosphate 42.8 58 0.002 23.1 5.7 38 69-106 106-145 (323)
63 3pnn_A Conserved domain protei 42.7 45 0.0015 23.5 5.0 77 27-106 33-127 (303)
64 1fxo_A Glucose-1-phosphate thy 42.6 85 0.0029 22.0 7.3 78 28-106 34-113 (293)
65 2vsh_A TARI, 2-C-methyl-D-eryt 41.3 72 0.0025 20.9 5.7 75 28-105 32-117 (236)
66 2xwl_A 2-C-methyl-D-erythritol 41.1 72 0.0025 20.7 7.9 73 28-106 31-105 (223)
67 1qg8_A Protein (spore coat pol 39.1 81 0.0028 20.7 5.9 36 16-51 55-98 (255)
68 2l8b_A Protein TRAI, DNA helic 38.9 34 0.0012 23.3 3.7 43 41-85 120-167 (189)
69 3bcv_A Putative glycosyltransf 34.8 93 0.0032 20.2 5.6 43 6-51 52-94 (240)
70 1lvw_A Glucose-1-phosphate thy 32.4 1.3E+02 0.0044 21.1 6.9 77 28-106 35-114 (295)
71 2x65_A Mannose-1-phosphate gua 29.3 1.3E+02 0.0046 21.5 5.8 78 27-107 34-113 (336)
72 1mc3_A Glucose-1-phosphate thy 29.0 1.5E+02 0.0051 20.8 6.9 77 28-106 35-114 (296)
73 1jyk_A LICC protein, CTP:phosp 28.7 1.3E+02 0.0046 20.3 5.5 71 28-106 57-130 (254)
74 3q80_A 2-C-methyl-D-erythritol 28.2 1.4E+02 0.0048 20.2 7.8 73 27-106 35-112 (231)
75 2dpw_A Hypothetical protein TT 27.7 1.1E+02 0.0038 20.3 4.9 63 28-105 33-95 (232)
76 4ehx_A Tetraacyldisaccharide 4 27.4 73 0.0025 23.0 4.1 36 11-51 105-140 (315)
77 3lw6_A FI08434P, beta-4-galact 24.7 67 0.0023 23.3 3.4 28 81-108 99-128 (287)
78 2r25_B Osmosensing histidine p 24.6 97 0.0033 18.1 3.8 18 69-86 54-73 (133)
79 2ggo_A 401AA long hypothetical 21.8 65 0.0022 23.3 2.9 71 28-107 32-103 (401)
80 3ilh_A Two component response 21.3 1.3E+02 0.0045 17.4 4.5 6 69-74 62-67 (146)
81 3t8y_A CHEB, chemotaxis respon 20.1 1.4E+02 0.0047 18.2 3.9 6 69-74 73-78 (164)
82 1ydh_A AT5G11950; structural g 20.0 2.1E+02 0.0073 19.4 5.9 32 69-100 41-72 (216)
No 1
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.84 E-value=1e-20 Score=132.59 Aligned_cols=94 Identities=18% Similarity=0.283 Sum_probs=84.2
Q ss_pred CCCeEEEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHH
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGA 89 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~ 89 (110)
+|...+||+.++++.++.+++.|+..|+ ..|||||||+ |++.++++.+.+ +++ ++++++ .+|.|.+.|||.|+
T Consensus 4 ~p~vsViIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~-~~~-~i~~i~-~~n~G~~~a~N~g~ 80 (240)
T 3bcv_A 4 IPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAA-QYP-NIKVIH-KKNAGLGMACNSGL 80 (240)
T ss_dssp CCSEEEEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHH-HCS-SEEEEE-CCCCCHHHHHHHHH
T ss_pred CCcEEEEEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHh-hCC-CEEEEE-CCCCChHHHHHHHH
Confidence 4666788899999999999999998776 5799999999 778889998887 777 799997 56899999999999
Q ss_pred HhcCCCEEEEEcCCCCcCCCC
Q psy5323 90 ENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 90 ~~a~g~~i~flD~d~~~~~~W 110 (110)
+.|+|+||+|+|+|+.+.++|
T Consensus 81 ~~a~g~~i~~lD~Dd~~~~~~ 101 (240)
T 3bcv_A 81 DVATGEYVAFCDSDDYVDSDM 101 (240)
T ss_dssp HHCCSSEEEECCTTCCCCTTH
T ss_pred HHcCCCEEEEECCCCcCCHHH
Confidence 999999999999999999886
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.79 E-value=4.9e-19 Score=136.19 Aligned_cols=97 Identities=32% Similarity=0.624 Sum_probs=85.8
Q ss_pred hCCCeEEEEecCCch-HHHHHHHhccccccC----CEEEEEeCC--C-CchHHHHHHHhccCCCcEEEEEccCCcchHHH
Q psy5323 13 RLPPKVRLIRLKERA-GLIRARIAGAENAKG----DVLMFLDSH--Y-ELQGKLDYYIQTRLPPKVRLIRLKERAGLIRA 84 (110)
Q Consensus 13 ~lp~~v~ii~~~~~~-~~i~~~l~~~~~~~~----~EiivVDD~--d-~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~a 84 (110)
.+|...+||++++++ ..+.+++.|+..++. +|||||||+ | .+.+.++++.+ +++.+++++++++|.|++.|
T Consensus 27 ~~p~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~-~~~~~v~vi~~~~n~G~~~a 105 (472)
T 1xhb_A 27 NLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVK-KLKVPVHVIRMEQRSGLIRA 105 (472)
T ss_dssp CCCCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHH-SSSSCEEEEECSSCCCHHHH
T ss_pred CCCCeEEEEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHH-HCCCcEEEEECCCCCChHHH
Confidence 467677888888888 999999999987763 599999999 4 38888998877 77647999999999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 85 RIAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 85 rn~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
||.|++.|+|+||+|+|+|+++.++|
T Consensus 106 ~N~g~~~A~gd~i~flD~D~~~~p~~ 131 (472)
T 1xhb_A 106 RLKGAAVSRGQVITFLDAHCECTAGW 131 (472)
T ss_dssp HHHHHHHCCSSEEEEEESSEEECTTC
T ss_pred HHHHHHhccCCeEEEECCCeEeCccH
Confidence 99999999999999999999999998
No 3
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.79 E-value=5.5e-19 Score=139.75 Aligned_cols=96 Identities=35% Similarity=0.640 Sum_probs=85.3
Q ss_pred hCCCeEEEEecCCch-HHHHHHHhccccccC----CEEEEEeCC--CCc-hHHHHHHHhccCCCcEEEEEccCCcchHHH
Q psy5323 13 RLPPKVRLIRLKERA-GLIRARIAGAENAKG----DVLMFLDSH--YEL-QGKLDYYIQTRLPPKVRLIRLKERAGLIRA 84 (110)
Q Consensus 13 ~lp~~v~ii~~~~~~-~~i~~~l~~~~~~~~----~EiivVDD~--d~t-~~~l~~~~~~~~~~~~~~i~~~~~~G~~~a 84 (110)
.+|...+||++++++ ..+.+++.|+..++. .|||||||+ |.+ .+.++.+.+ +++ +++++++++|.|++.|
T Consensus 110 ~~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~-~~~-~v~vi~~~~n~G~~~A 187 (570)
T 2d7i_A 110 TLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMA-LFP-SVRILRTKKREGLIRT 187 (570)
T ss_dssp SCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHT-TST-TEEEEECSSCCCHHHH
T ss_pred CCCCeEEEEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHH-hCC-eEEEEECCCCCCHHHH
Confidence 467677888888887 899999999987763 399999999 667 788998887 776 8999999999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 85 RIAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 85 rn~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
||.|++.|+|+||+|||+|+++.++|
T Consensus 188 ~N~G~~~A~gd~i~fLD~D~~~~p~~ 213 (570)
T 2d7i_A 188 RMLGASVATGDVITFLDSHCEANVNW 213 (570)
T ss_dssp HHHHHHHCCSSEEEECCSSEEECTTC
T ss_pred HHHHHHhcCCCEEEEEcCCccccccH
Confidence 99999999999999999999999998
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.78 E-value=2.6e-19 Score=126.61 Aligned_cols=93 Identities=12% Similarity=0.161 Sum_probs=80.9
Q ss_pred CCeEEEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEcc--------CCcchH
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLK--------ERAGLI 82 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~--------~~~G~~ 82 (110)
|...+|+++++++.++.+++.|+..|+ ..|||||||+ |++.++++.+.. .+ ++++++++ .|.|.+
T Consensus 1 p~vSViIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~--~~-~i~~i~~~~~~~~~~~~n~G~~ 77 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN--DN-RVRFYQSDISGVKERTEKTRYA 77 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG--ST-TEEEEECCCCSHHHHHSSCHHH
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhh--cC-CEEEEecccccccccccccCHH
Confidence 445678889999999999999998776 5799999999 567777776644 34 79999998 899999
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 83 RARIAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 83 ~arn~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
.|||.|++.|+|+||+|+|+|+.+.++|
T Consensus 78 ~a~N~gi~~a~g~~i~~lD~Dd~~~~~~ 105 (255)
T 1qg8_A 78 ALINQAIEMAEGEYITYATDDNIYMPDR 105 (255)
T ss_dssp HHHHHHHHHCCCSEEEEEETTEEECTTH
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccChHH
Confidence 9999999999999999999999998876
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.75 E-value=3.9e-18 Score=132.37 Aligned_cols=93 Identities=29% Similarity=0.552 Sum_probs=78.7
Q ss_pred hCCCeEEEEecCCchH-HHHHHHhccccccC----CEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHH
Q psy5323 13 RLPPKVRLIRLKERAG-LIRARIAGAENAKG----DVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRAR 85 (110)
Q Consensus 13 ~lp~~v~ii~~~~~~~-~i~~~l~~~~~~~~----~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~ar 85 (110)
.+|...+||++++++. .+.+++.|+..++. .|||||||+ |.+. ...++ +++ +++++++++|.|++.||
T Consensus 64 ~~p~vSVIIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~---~~~~~-~~~-~v~vi~~~~n~G~~~A~ 138 (501)
T 2ffu_A 64 DLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPED---GALLG-KIE-KVRVLRNDRREGLMRSR 138 (501)
T ss_dssp SCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHH---HHGGG-GBT-TEEEEECSSCCHHHHHH
T ss_pred CCCCEEEEEEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHH---HHHHh-cCC-CEEEEECCCCcCHHHHH
Confidence 4676778888887765 99999999887763 499999999 4443 23344 566 79999999999999999
Q ss_pred HHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 86 IAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 86 n~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
|.|++.|+|+||+|+|+|+++.++|
T Consensus 139 N~G~~~A~gd~i~flD~D~~~~p~~ 163 (501)
T 2ffu_A 139 VRGADAAQAKVLTFLDSHCECNEHW 163 (501)
T ss_dssp HHHHHHCCSSEEEECCSSEEECTTC
T ss_pred HHHHHhcCCCEEEEECCCcccCccH
Confidence 9999999999999999999999998
No 6
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=99.73 E-value=2.7e-19 Score=144.51 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=0.0
Q ss_pred CCCeEEEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHH
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGA 89 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~ 89 (110)
||...+||++++++.++.+++.|+..|+ ..|||||||+ |+|.++++.+.+ +++.+++++++++|.|.+.|||.|+
T Consensus 1 Mp~vSVIIp~yN~~~~L~~~L~Sll~Qt~~~~EIIVVDDgStD~t~~il~~~~~-~~~~~i~~i~~~~n~G~~~arN~gi 79 (729)
T 3l7i_A 1 MNKLTIIVTYYNAEEYITGCLESIKQQRTQDFNLIIVNDGSTDQSKKLMDEAIK-DYDKNIRFIDLDENSGHAHARNIAL 79 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEcCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCcHHHHHHHHHH-hCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3556788899999999999999998887 5899999999 778899998877 6444899999999999999999999
Q ss_pred HhcCCCEEEEEcCCCCcCCCC
Q psy5323 90 ENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 90 ~~a~g~~i~flD~d~~~~~~W 110 (110)
+.|+|+||+|+|+|+.+.++|
T Consensus 80 ~~A~gdyI~flD~Dd~~~p~~ 100 (729)
T 3l7i_A 80 EEVETPYFMFLDADDELASYA 100 (729)
T ss_dssp ---------------------
T ss_pred HhccCCEEEEECCCCCCChhH
Confidence 999999999999999999887
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.69 E-value=8.2e-17 Score=127.34 Aligned_cols=94 Identities=19% Similarity=0.118 Sum_probs=82.5
Q ss_pred CCCeEEEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHH
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGA 89 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~ 89 (110)
.|...+++++++++.++.+++.|+..|+ .+|||||||+ |+|.+++..+.. +++ ++++++ ..|.|.+.|+|.|+
T Consensus 374 ~~~vsiii~~yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~-~~~-~i~~~~-~~n~G~~~a~n~g~ 450 (625)
T 2z86_A 374 VPLVSIYIPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYA-NHP-RVRFIS-QKNKGIGSASNTAV 450 (625)
T ss_dssp SCSEEEEEEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHT-TCT-TEEEEE-ECCCCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHh-hCC-cEEEEe-CCCCCHHHHHHHHH
Confidence 3445677888888999999999998876 5799999999 778889988877 666 799997 77899999999999
Q ss_pred HhcCCCEEEEEcCCCCcCCCC
Q psy5323 90 ENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 90 ~~a~g~~i~flD~d~~~~~~W 110 (110)
+.|+|+||+|+|+|+.+.++|
T Consensus 451 ~~a~g~~i~~ld~D~~~~~~~ 471 (625)
T 2z86_A 451 RLCRGFYIGQLDSDDFLEPDA 471 (625)
T ss_dssp HHCCSSEEEECCTTCEECTTH
T ss_pred HhcCCCEEEEECCCcccChhH
Confidence 999999999999999998876
No 8
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=99.68 E-value=1.7e-17 Score=123.08 Aligned_cols=96 Identities=17% Similarity=0.123 Sum_probs=77.8
Q ss_pred CCCeEEEEecCCchHHHHHHHhcccccc---CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEE-ccCCcchHHHHHH
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAENAK---GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIR-LKERAGLIRARIA 87 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~~~~---~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~-~~~~~G~~~arn~ 87 (110)
.|...+||+.++.+..+.+++.++..|+ .+|||||||+ |+|.+.+..+.. +...+++++. ++.|.|.+.|+|.
T Consensus 47 ~~~vSViIp~yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~-~~~~~~~~~~~~~~n~G~~~a~n~ 125 (329)
T 3ckj_A 47 GRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGA-RVVSREQALPEVPIRPGKGEALWR 125 (329)
T ss_dssp TCCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTC-EEEEHHHHCTTSCCCCSHHHHHHH
T ss_pred CCcEEEEEeeCCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhh-hhccceeeeccCCCCCCHHHHHHH
Confidence 3556688888889999999999998876 3899999999 778787776543 2111334442 7889999999999
Q ss_pred HHHhcCCCEEEEEcCCCC-cCCCC
Q psy5323 88 GAENAKGDVLMFLDSHCE-LGTNW 110 (110)
Q Consensus 88 G~~~a~g~~i~flD~d~~-~~~~W 110 (110)
|++.|+|+||+|+|+|+. +.++|
T Consensus 126 g~~~a~gd~i~~lD~D~~~~~p~~ 149 (329)
T 3ckj_A 126 SLAASRGDIVVFVDSDLINPHPMF 149 (329)
T ss_dssp HHHHCCCSEEEECCTTEESCCTTH
T ss_pred HHHhCCCCEEEEECCCCCCcChHH
Confidence 999999999999999999 88876
No 9
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=99.65 E-value=6.3e-17 Score=123.41 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=77.8
Q ss_pred hCCCeEEEEecCCchHHHHHHHhcccc---c--cCCEEEEEeCC--CCchHHHHHHHhccC-CCcEEEEEccCCcchHHH
Q psy5323 13 RLPPKVRLIRLKERAGLIRARIAGAEN---A--KGDVLMFLDSH--YELQGKLDYYIQTRL-PPKVRLIRLKERAGLIRA 84 (110)
Q Consensus 13 ~lp~~v~ii~~~~~~~~i~~~l~~~~~---~--~~~EiivVDD~--d~t~~~l~~~~~~~~-~~~~~~i~~~~~~G~~~a 84 (110)
..|...+||+.+|.+..+.+++.++.. + ..+|||||||+ |.|.+++..+.. +. ...+++++++.|.|.+.|
T Consensus 92 ~~p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgStD~T~~i~~~~~~-~v~~~~~~~i~~~~n~G~g~A 170 (387)
T 3f1y_A 92 LGLTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSEDGTAGVAASHGA-EVYSENELMSGYGDAHGKGDA 170 (387)
T ss_dssp HTCCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSSSHHHHHHHTTC-EEEEGGGTTGGGCSCCSHHHH
T ss_pred CCCeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCCccHHHHHHHhCc-hhcccceeEecCCccCCHHHH
Confidence 456677889988888999999998864 2 36899999999 778888876644 21 112345567789999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCC-cCCCC
Q psy5323 85 RIAGAENAKGDVLMFLDSHCE-LGTNW 110 (110)
Q Consensus 85 rn~G~~~a~g~~i~flD~d~~-~~~~W 110 (110)
+|.|++.|+|+||+|+|+|+. ..++|
T Consensus 171 ~n~G~~~A~gd~i~~lDaD~~~~~p~~ 197 (387)
T 3f1y_A 171 MWRALSVTRGDLVLYIDADTRDFRPQL 197 (387)
T ss_dssp HHHHTTTCCSSEEEECCTTCSSCCTHH
T ss_pred HHHHHHhcCCCEEEEEcCCCCcCCHHH
Confidence 999999999999999999999 78765
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.58 E-value=6.1e-15 Score=116.63 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=79.0
Q ss_pred CCCeEEEEecCCchHHHHHHHhcccccc---CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCc-chHHHHHH
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAENAK---GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERA-GLIRARIA 87 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~~~~---~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~-G~~~arn~ 87 (110)
+|...++|+++++...+.+++.++..|+ ..|||||||+ |.+.+.++.+.. . + ++++++++.+. |.+.|+|.
T Consensus 92 ~p~vsviIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~~~-~-~-~i~~i~~~~~~~g~~~a~N~ 168 (625)
T 2z86_A 92 IDGLSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFES-L-L-NIKYVRQKDYGYQLCAVRNL 168 (625)
T ss_dssp CCCEEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTTTT-T-S-CEEEEEECCCSCCHHHHHHH
T ss_pred CCcEEEEEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHhhh-c-C-CeEEEEeCCCCcchhHHHHH
Confidence 4666788888888999999999998774 6899999999 667777776643 2 3 68988877543 69999999
Q ss_pred HHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 88 GAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 88 G~~~a~g~~i~flD~d~~~~~~W 110 (110)
|++.|+|+||+|+|+|+.+.++|
T Consensus 169 g~~~a~g~~v~~lD~D~~~~~~~ 191 (625)
T 2z86_A 169 GLRAAKYNYVAILDCDMAPNPLW 191 (625)
T ss_dssp HHHHCCSSEEEEECTTEEECTTH
T ss_pred HHHhCCcCEEEEECCCCCCCHHH
Confidence 99999999999999999999886
No 11
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=99.53 E-value=1.3e-14 Score=116.87 Aligned_cols=94 Identities=9% Similarity=-0.052 Sum_probs=74.1
Q ss_pred CCeEEEEecCCchHHHHHHHhcccccc-----CCEEEEEeCC-CC--chHHHHHHHhccCCCcEEEEEccCCcchHHHHH
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAENAK-----GDVLMFLDSH-YE--LQGKLDYYIQTRLPPKVRLIRLKERAGLIRARI 86 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~~~~-----~~EiivVDD~-d~--t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn 86 (110)
|...+||++++++..+.++|.++..|+ ..|||||||+ .+ ....+...+++..+ ++++++++ |.|.++|+|
T Consensus 180 pkVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~-~I~vI~~~-N~G~a~a~N 257 (657)
T 4fix_A 180 ANIAVGIPTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGS-RLSIHDQP-NLGGSGGYS 257 (657)
T ss_dssp CCEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGG-GEEEEECC-CCHHHHHHH
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCC-CEEEEECC-CCCHHHHHH
Confidence 445677889999999999999998775 3599999999 33 12222233331334 89999988 999999999
Q ss_pred HHHHhcC----CCEEEEEcCCCCcCCCC
Q psy5323 87 AGAENAK----GDVLMFLDSHCELGTNW 110 (110)
Q Consensus 87 ~G~~~a~----g~~i~flD~d~~~~~~W 110 (110)
.|++.|. ++||+|||+|+.+.++|
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~ 285 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDS 285 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhH
Confidence 9999994 58999999999998876
No 12
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=99.44 E-value=2.4e-13 Score=97.16 Aligned_cols=70 Identities=10% Similarity=-0.028 Sum_probs=57.7
Q ss_pred eEEEEecCCchHHHHHHHh----ccccccCCEEEEEeCC-CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHh
Q psy5323 17 KVRLIRLKERAGLIRARIA----GAENAKGDVLMFLDSH-YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAEN 91 (110)
Q Consensus 17 ~v~ii~~~~~~~~i~~~l~----~~~~~~~~EiivVDD~-d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~ 91 (110)
.++||..++.+..+.+|+. ++..|+.+||||||++ .+. .|.+.|+|.|++.
T Consensus 17 ~iSII~~yN~~~~l~~~l~sl~~sl~~q~~~EiIVVDn~s~d~------------------------~g~a~a~N~Gi~~ 72 (249)
T 2nxv_A 17 MFSVCSLVRDQAKYDRLLESFERFGFTPDKAEFLAADNREGNQ------------------------FHGFSWHKQMLPR 72 (249)
T ss_dssp SEEEEEEESCHHHHHHHHHHHHHTTCCTTTEEEEEEECTTSCS------------------------CCTTTHHHHHGGG
T ss_pred eEEEEEeeCCHHHHHHHHHHHHHhccCCCcEEEEEEECCCCCc------------------------ccHHHHHHHHHHh
Confidence 4556665677889999998 4444555899999998 330 3789999999999
Q ss_pred cCCCEEEEEcCCCCcCCCC
Q psy5323 92 AKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 92 a~g~~i~flD~d~~~~~~W 110 (110)
|+|+|++|||+|+.+.++|
T Consensus 73 A~g~yl~fln~D~~~~~~~ 91 (249)
T 2nxv_A 73 CKGRYVIFCHEDVELVDRG 91 (249)
T ss_dssp CCSSEEEEEETTEECSSCC
T ss_pred cCCCEEEEECCCcccCccH
Confidence 9999999999999999998
No 13
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=99.41 E-value=3.7e-13 Score=110.25 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=72.5
Q ss_pred hCCCeEEEEecCCch-HHHHHHHhcccccc--C--CEEEEEeCC--CCch---------------HHHHHHHhccCCCcE
Q psy5323 13 RLPPKVRLIRLKERA-GLIRARIAGAENAK--G--DVLMFLDSH--YELQ---------------GKLDYYIQTRLPPKV 70 (110)
Q Consensus 13 ~lp~~v~ii~~~~~~-~~i~~~l~~~~~~~--~--~EiivVDD~--d~t~---------------~~l~~~~~~~~~~~~ 70 (110)
..|...++++.++.+ .++++++.|+..|+ . .||++|||+ |++. ..++.+.+ +. ++
T Consensus 138 ~~P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~-~~--~v 214 (802)
T 4hg6_A 138 ELPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCR-EL--GV 214 (802)
T ss_dssp TCCCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHH-HH--TC
T ss_pred CCCcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHH-hc--Cc
Confidence 356566778866665 56699999987765 2 699999999 5552 23444444 33 47
Q ss_pred EEEEccCC-cchHHHHHHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 71 RLIRLKER-AGLIRARIAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 71 ~~i~~~~~-~G~~~arn~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
+++..++| .|.++|+|.|++.++||||+|+|+|+.+.++|
T Consensus 215 ~~i~~~~~~~GKa~alN~gl~~a~gd~Il~lDaD~~~~pd~ 255 (802)
T 4hg6_A 215 VYSTRERNEHAKAGNMSAALERLKGELVVVFDADHVPSRDF 255 (802)
T ss_dssp EEEECSSCCSHHHHHHHHHHHHCCCSEEEECCTTEEECTTH
T ss_pred EEEEecCCCCcchHHHHHHHHhcCCCEEEEECCCCCcChHH
Confidence 77776665 78999999999999999999999999998875
No 14
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=99.24 E-value=4.1e-11 Score=90.74 Aligned_cols=87 Identities=9% Similarity=0.095 Sum_probs=63.6
Q ss_pred CCeEEEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCc---hHHHHHHHhccCCCcEEEEEccCCcchHHHHHH
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YEL---QGKLDYYIQTRLPPKVRLIRLKERAGLIRARIA 87 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t---~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~ 87 (110)
....+|||-++.+.. .+.++..|+ ..|||+|||+ |.+ .+.++.+.+ ..+.++++++ ++|.|++.|||.
T Consensus 53 ~klSIVVPvYNEe~~---lLesVl~qi~~d~eIIlVdDGS~D~s~~e~dil~~~~~-~~~~ri~viH-Qkn~gls~Ar~~ 127 (391)
T 2wvl_A 53 EQTAIVVPTRNERLK---LLEGVLSGIPHEALILVASNSSPDRFQMERDLLEEFAH-LTERPALIFH-QKDPALAEALRA 127 (391)
T ss_dssp TTEEEEEEESSCCHH---HHHHHHHTSCTTSEEEEEECCCHHHHHHHHHHHHHHHH-HTTCCEEEEE-TTCHHHHHHHHH
T ss_pred hceEEEEeccCcHHH---HHHHHHhcCCCCceEEEEECCCCCChHhHHHHHHHHHh-hcccceEEEe-ccChHHHHHHHh
Confidence 346788885444332 355555444 5899999999 666 457778776 3223799996 678999999973
Q ss_pred -----------------------HHHhc---CCCEEEEEcCCCCc
Q psy5323 88 -----------------------GAENA---KGDVLMFLDSHCEL 106 (110)
Q Consensus 88 -----------------------G~~~a---~g~~i~flD~d~~~ 106 (110)
|+..| .|+||.|+|||..+
T Consensus 128 ~G~~~il~~~~~vR~GKGegmi~Gi~~Ak~~~geYVgFvDADdyi 172 (391)
T 2wvl_A 128 GGYPHPIGEDGLVRSGKAEGMILALVFAALSGRRYVGFIDADNYF 172 (391)
T ss_dssp TTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCBSC
T ss_pred cCcchhhcccccccccchHHHHHHHHHHHhcCCCEEEEEcCcCCC
Confidence 77777 89999999999876
No 15
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=99.23 E-value=1.4e-11 Score=90.59 Aligned_cols=71 Identities=7% Similarity=0.031 Sum_probs=58.9
Q ss_pred CeEEEEecCCchHHHHHHHhccc---ccc--CCEEEEEeCC-CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHH
Q psy5323 16 PKVRLIRLKERAGLIRARIAGAE---NAK--GDVLMFLDSH-YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGA 89 (110)
Q Consensus 16 ~~v~ii~~~~~~~~i~~~l~~~~---~~~--~~EiivVDD~-d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~ 89 (110)
...+||++++++..+.++|.++. .++ .+|||||||. |. .+ +.+.|||.|+
T Consensus 66 ~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds~d~-----------~f-------------~~a~a~N~G~ 121 (287)
T 2fy7_A 66 KVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAGDT-----------IF-------------NRAKLLNVGF 121 (287)
T ss_dssp EEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSS-----------CC-------------CHHHHHHHHH
T ss_pred cEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeCCCC-----------cc-------------chhhhhhhHH
Confidence 34577899999999999999986 333 5899999997 42 11 4688999999
Q ss_pred ----HhcCCCEEEEEcCCCCcCCCC
Q psy5323 90 ----ENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 90 ----~~a~g~~i~flD~d~~~~~~W 110 (110)
+.|+|+||+|+|+|+.+.++|
T Consensus 122 ~~al~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 122 QEALKDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp HHHHHHSCCCEEEEECTTEEESBTT
T ss_pred HHHHHhCCCCEEEEECCCcccCCCc
Confidence 999999999999999998875
No 16
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=99.22 E-value=1.9e-11 Score=93.55 Aligned_cols=89 Identities=9% Similarity=0.054 Sum_probs=60.4
Q ss_pred EEEEecCCchHHHHHHHhccc---cccCCEEEEEeCC--CCchHHHHHHHhccC----CCcEEEEEcc--C--CcchHHH
Q psy5323 18 VRLIRLKERAGLIRARIAGAE---NAKGDVLMFLDSH--YELQGKLDYYIQTRL----PPKVRLIRLK--E--RAGLIRA 84 (110)
Q Consensus 18 v~ii~~~~~~~~i~~~l~~~~---~~~~~EiivVDD~--d~t~~~l~~~~~~~~----~~~~~~i~~~--~--~~G~~~a 84 (110)
++|++.++. . +...+..+. .....|||||||| |+|.++++++.+ +. ..++.++... . |.|.+.|
T Consensus 3 lVIiP~~eE-~-I~~vl~~l~~~~~~~~~EIIVVDDGStD~T~eia~~la~-~~~~~~g~~vi~~~~~r~~~~n~GkG~A 79 (397)
T 2bo4_A 3 LVVFPFKHE-H-PEVLLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAP-EISRATGTPVSVRLQERLGTLRPGKGDG 79 (397)
T ss_dssp EEEEECCSS-C-HHHHHHHHHHHHHSTTCCEEEEEESSCCHHHHHHHHHHH-HHHHHHSCCEEEEECCCCSSSSSSHHHH
T ss_pred EEEEeCCcc-C-HHHHHHHHHHhccCCCeEEEEEECcCCccHHHHHHHhhh-hcccccCCeEEEEecccCCCCCCCHHHH
Confidence 566776553 2 444444332 2235899999999 779888885543 22 1133333222 3 7899999
Q ss_pred HHHHH----HhcCCCEEEEEcCCCC-cCCC
Q psy5323 85 RIAGA----ENAKGDVLMFLDSHCE-LGTN 109 (110)
Q Consensus 85 rn~G~----~~a~g~~i~flD~d~~-~~~~ 109 (110)
.+.|+ ..|+||+++|+|||.. ..|.
T Consensus 80 l~~G~~~Al~~a~gd~vv~mDADlq~~~P~ 109 (397)
T 2bo4_A 80 MNTALRYFLEETQWERIHFYDADITSFGPD 109 (397)
T ss_dssp HHHHHHHHHHHCCCSEEEECCTTCSSCCHH
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCCCCHH
Confidence 99999 9999999999999996 4543
No 17
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=98.99 E-value=3.9e-09 Score=80.74 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=63.3
Q ss_pred CeEEEEecCCc-hHHHHHHHhccccccCCEEEEEeCC--CCc------hHHHHHHHhccCCCcEEEEEccC---------
Q psy5323 16 PKVRLIRLKER-AGLIRARIAGAENAKGDVLMFLDSH--YEL------QGKLDYYIQTRLPPKVRLIRLKE--------- 77 (110)
Q Consensus 16 ~~v~ii~~~~~-~~~i~~~l~~~~~~~~~EiivVDD~--d~t------~~~l~~~~~~~~~~~~~~i~~~~--------- 77 (110)
+..+|||..+. ..++...+..+.. ..|||+|||+ |++ .+.+..+.. ..+....+++...
T Consensus 52 ~iSVVIP~yNEE~~lI~~vL~~i~~--~~eIIvVDDgSrD~tD~~~~~~~~l~~~~~-~~~~~~~Vl~~~~p~v~~~~~~ 128 (394)
T 2zu9_A 52 KMAVIVPMKNEKLHLVDGVLKAIPH--KCPIIIVSNSKREGPNRYKLEVDLIRHFYN-LTHSKIIMIHQKDPGLAKAFKE 128 (394)
T ss_dssp TEEEEEEESSCCHHHHHHHHHHSCT--TSCEEEEECCCCSSSCHHHHHHHHHHHHHH-HHCCCEEEEETTCHHHHHHHHH
T ss_pred CEEEEEecCcccHHHHHHHHHcCCC--CcEEEEEECcCcccccchhhHHHHHHHHhh-ccccceEEEecCCcchhHHhhh
Confidence 46778885444 4677777776632 5899999999 666 456666544 3233566666543
Q ss_pred -------------CcchHHHHHHHHHhc---CCCEEEEEcCCC
Q psy5323 78 -------------RAGLIRARIAGAENA---KGDVLMFLDSHC 104 (110)
Q Consensus 78 -------------~~G~~~arn~G~~~a---~g~~i~flD~d~ 104 (110)
+.|.+.|.-.|+..| +|++|+|+|||.
T Consensus 129 ~g~~~il~~~~~~r~GKG~Am~aGl~~A~~~~gd~Vv~~DaDl 171 (394)
T 2zu9_A 129 VGYTDILDENGMIRSGKGEGMLVGLLLAKAIGAEYVGFVDADN 171 (394)
T ss_dssp HTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCB
T ss_pred ccccccccccccccCChHHHHHHHHHHHhhCCCCEEEEEeCCC
Confidence 249999999999999 999999999997
No 18
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=98.53 E-value=1.3e-07 Score=71.13 Aligned_cols=88 Identities=13% Similarity=0.040 Sum_probs=63.3
Q ss_pred eEEEEecCCchHHHHHHHhcccccc----CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEE---------ccCCcch
Q psy5323 17 KVRLIRLKERAGLIRARIAGAENAK----GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIR---------LKERAGL 81 (110)
Q Consensus 17 ~v~ii~~~~~~~~i~~~l~~~~~~~----~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~---------~~~~~G~ 81 (110)
.-++|..++|.. ++++|.++..+. .+||||.||| +.+.+.++.+.. +++.+. .++|.|+
T Consensus 4 ~pViI~~yNRp~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~~~~-----~I~~~~~~d~~~~~~~~~N~g~ 77 (343)
T 1fo8_A 4 IPILVIACDRST-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGS-----AVTHIRQPDLSNIAVQPDHRKF 77 (343)
T ss_dssp CCEEEEESSCTT-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGG-----GSEEEECSCCCCCCCCTTCGGG
T ss_pred ccEEEEECCcHH-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHHcCC-----ceEEEEcCCccccccchhhcCc
Confidence 346666777877 999999987665 3699999999 456666665422 244432 3556675
Q ss_pred H----------HHHHHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 82 I----------RARIAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 82 ~----------~arn~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
. .|+|..+..+++++++|||.|+.++|++
T Consensus 78 ~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF 116 (343)
T 1fo8_A 78 QGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDF 116 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTH
T ss_pred ccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHH
Confidence 4 5667777777999999999999999863
No 19
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=94.65 E-value=0.56 Score=33.58 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=54.1
Q ss_pred CCCeEEEEecCCchHHHH--HHHhc-cccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccC---------Ccch
Q psy5323 14 LPPKVRLIRLKERAGLIR--ARIAG-AENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKE---------RAGL 81 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~--~~l~~-~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~---------~~G~ 81 (110)
+|.++.|.+++.|..-.. .+|+. +..-.+.-.|||+|++.+......+++ +..-..+.+..+. ..|
T Consensus 2 ~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp~l~WIVVEd~~~~~~~v~~lL~-~sgl~y~HL~~~~~~~~~~~~~prg- 79 (246)
T 2d0j_A 2 LPTIYAITPTYSRPVQKAELTRLANTFRQVAQLHWILVEDAAARSELVSRFLA-RAGLPSTHLHVPTPRRYKRPGLPRA- 79 (246)
T ss_dssp CCCEEEEEEECCSTTHHHHHHHHHHHHTTSTTEEEEEEESSSSCCHHHHHHHH-HSCSCEEEEECCCCCC----CCCCC-
T ss_pred CCEEEEEeCCCCccchhHHHHHHHHHHhcCCceEEEEEcCCCCCCHHHHHHHH-HcCCceEEEecCCccccCCCCCcch-
Confidence 677778888887743322 23332 222334677899999444455556666 5432344443321 123
Q ss_pred HHHHHHHHHhcC---------CCEEEEEcCCCCcC
Q psy5323 82 IRARIAGAENAK---------GDVLMFLDSHCELG 107 (110)
Q Consensus 82 ~~arn~G~~~a~---------g~~i~flD~d~~~~ 107 (110)
...||.|++..+ .-++.|.|.|-.++
T Consensus 80 ~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtY~ 114 (246)
T 2d0j_A 80 TEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYS 114 (246)
T ss_dssp HHHHHHHHHHHHHHSCSSSCCCCEEEECCTTCEEC
T ss_pred HHHHHHHHHHHHHhcccccCccceEEEccCCCccc
Confidence 378999996532 35889999987654
No 20
>3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A*
Probab=92.87 E-value=1 Score=32.83 Aligned_cols=92 Identities=8% Similarity=-0.023 Sum_probs=51.4
Q ss_pred CCCeEEEEecCCchHHHH--HHHhc-cccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCC------------
Q psy5323 14 LPPKVRLIRLKERAGLIR--ARIAG-AENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKER------------ 78 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~--~~l~~-~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~------------ 78 (110)
+|.++.|.+++.|..-.. .+|+. +..-.+.-.|||+|++........+++ +..-..+.+..+..
T Consensus 20 ~p~IivVTPTy~R~~Q~a~LtRLa~TL~~Vp~L~WIVVEd~~~~t~~va~lL~-rsGl~y~HL~~~~p~~~~~~~~dp~w 98 (281)
T 3cu0_A 20 HMTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSGLLA-ASGLLFTHLVVLTPKAQRLREGEPGW 98 (281)
T ss_dssp -CEEEEEEEECCSTTHHHHHHHHHHHHTTSSSEEEEEEESSSSCCHHHHHHHH-HHCSEEEEEECCCC-----------C
T ss_pred CCeEEEEeCCCCCcchhHHHHHHHHHHhcCCceEEEEEcCCCCCCHHHHHHHH-HcCCceEEeccCCCcccccccccccc
Confidence 566667777777643322 23332 222235677899998433344555555 44322344433321
Q ss_pred ---cchHHHHHHHHHhcC-----------------CCEEEEEcCCCCcC
Q psy5323 79 ---AGLIRARIAGAENAK-----------------GDVLMFLDSHCELG 107 (110)
Q Consensus 79 ---~G~~~arn~G~~~a~-----------------g~~i~flD~d~~~~ 107 (110)
.| ...||.|++..+ --+|.|.|.|-.++
T Consensus 99 ~~~rg-~~QRN~AL~~Ir~~~~~~~~~~~~~~~~~~GVVyFADDDNtYs 146 (281)
T 3cu0_A 99 VHPRG-VEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYS 146 (281)
T ss_dssp CCCCS-HHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEEC
T ss_pred ccchh-HHHHHHHHHHHHhhccccchhccccccCCceeEEEecCCCccc
Confidence 23 456999997766 13789999886543
No 21
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*
Probab=91.10 E-value=1.4 Score=31.57 Aligned_cols=93 Identities=10% Similarity=0.010 Sum_probs=52.3
Q ss_pred CCCeEEEEecCCchHHHH--HHHhc-cccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCC------------
Q psy5323 14 LPPKVRLIRLKERAGLIR--ARIAG-AENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKER------------ 78 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~--~~l~~-~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~------------ 78 (110)
+|.++.|.+++.|..-.. .+|+. +..-.+.-.|||+|++........+++ +..-..+.+..+..
T Consensus 2 ~p~I~vVTPTy~R~~Q~a~LtRLa~TL~~Vp~L~WIVVEd~~~~t~~va~lL~-~sgl~y~HL~~~~p~~~~~~~~~~~~ 80 (253)
T 1v84_A 2 LPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVVEDAPRRTPLTARLLR-DTGLNYTHLHVETPRNYKLRGDARDP 80 (253)
T ss_dssp CCEEEEEEEECCSTTHHHHHHHHHHHHTTSSSEEEEEEESSSSCCHHHHHHHH-HHCCEEEEEECCCCHHHHCC------
T ss_pred CCEEEEEeCCCCccchhHHHHHHhhhhccCCceEEEEEeCCCCCCHHHHHHHH-HcCCceEEeecCCCccccccccccCc
Confidence 576777777877633222 22322 223346678899998433344555565 44322344433210
Q ss_pred --cchHHHHHHHHHhcC---------CCEEEEEcCCCCcC
Q psy5323 79 --AGLIRARIAGAENAK---------GDVLMFLDSHCELG 107 (110)
Q Consensus 79 --~G~~~arn~G~~~a~---------g~~i~flD~d~~~~ 107 (110)
.--...||.|++..+ --++.|.|.|-.++
T Consensus 81 ~~~rg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYd 120 (253)
T 1v84_A 81 RIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYS 120 (253)
T ss_dssp -CCTTHHHHHHHHHHHHHHSCSSSCCCEEEEECCTTSEEC
T ss_pred cccchHHHHHHHHHHHHHhcccccccceeEEEecCCCccc
Confidence 112457999997754 24889999886543
No 22
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=90.49 E-value=0.5 Score=32.89 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=28.0
Q ss_pred cEEEEEccCCcchHHHHHHHHHh----cCCCEEEEEcCC---CCcC
Q psy5323 69 KVRLIRLKERAGLIRARIAGAEN----AKGDVLMFLDSH---CELG 107 (110)
Q Consensus 69 ~~~~i~~~~~~G~~~arn~G~~~----a~g~~i~flD~d---~~~~ 107 (110)
.+.+... .+=+..|||.-+.. ...++++|+||| ....
T Consensus 27 ~~~l~~~--~SlI~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~Fd 70 (203)
T 2c0n_A 27 EYVILSR--RNHVAVQREIALDMFLEMKDYDTLAFLDEDVVPIEID 70 (203)
T ss_dssp CEEEECC--CSCHHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECC
T ss_pred eEEEEcc--ccchHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccC
Confidence 3555554 45689999999887 456999999999 5544
No 23
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=89.89 E-value=0.44 Score=35.98 Aligned_cols=48 Identities=44% Similarity=0.848 Sum_probs=38.9
Q ss_pred hhHHHHHHhhhCCCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC
Q psy5323 3 QGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 51 (110)
Q Consensus 3 ~~~l~~~~~~~lp~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~ 51 (110)
.+.+..|.+ ..|..+++++...+.|+..++..++...++.=|+++|+.
T Consensus 77 ~~~l~~~~~-~~~~~v~vi~~~~n~G~~~a~N~g~~~A~gd~i~flD~D 124 (472)
T 1xhb_A 77 KRPLESYVK-KLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAH 124 (472)
T ss_dssp THHHHHHHH-SSSSCEEEEECSSCCCHHHHHHHHHHHCCSSEEEEEESS
T ss_pred HHHHHHHHH-HCCCcEEEEECCCCCChHHHHHHHHHhccCCeEEEECCC
Confidence 445677766 366578999988888999999999888888889999998
No 24
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=89.04 E-value=1.7 Score=28.39 Aligned_cols=74 Identities=9% Similarity=0.003 Sum_probs=48.3
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEcc-CCcchHHHHHHHHHhc--CCCEEEEEcCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLK-ERAGLIRARIAGAENA--KGDVLMFLDSHC 104 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~-~~~G~~~arn~G~~~a--~g~~i~flD~d~ 104 (110)
.++...+..+......+|++|-+... +.+..++. .. .++++..+ ...|...+...|++.. ..++++++++|.
T Consensus 32 pli~~~l~~l~~~~~~~i~vv~~~~~--~~~~~~~~-~~--~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~ 106 (199)
T 2waw_A 32 TLLGATLAMARRCPFDQLIVTLGGAA--DEVLEKVE-LD--GLDIVLVDDAGLGCSSSLKSALTWVDPTAEGIVLMLGDQ 106 (199)
T ss_dssp EHHHHHHHHHHTSSCSEEEEEECTTH--HHHHHHSC-CT--TSEEEECCCCCTTCCCHHHHHHHTSCTTCSEEEEEETTC
T ss_pred CHHHHHHHHHHhCCCCcEEEEeCCCH--HHHHHHhc-cC--CCEEEECCCcccCHHHHHHHHHHhhhccCCeEEEEeCCc
Confidence 56666666665444467887765521 23344443 32 36666543 3458888888999887 568999999998
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 107 P~ 108 (199)
T 2waw_A 107 PG 108 (199)
T ss_dssp TT
T ss_pred cc
Confidence 64
No 25
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=88.16 E-value=2.4 Score=27.64 Aligned_cols=74 Identities=8% Similarity=0.018 Sum_probs=46.2
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEcc-CCcchHHHHHHHHHhc--CCCEEEEEcCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLK-ERAGLIRARIAGAENA--KGDVLMFLDSHC 104 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~-~~~G~~~arn~G~~~a--~g~~i~flD~d~ 104 (110)
.++...+..+......+|++|-... .+.+..++. .. .++++..+ ...|...+...|++.. ..++++++++|.
T Consensus 32 pll~~~l~~l~~~~~~~i~vv~~~~--~~~~~~~~~-~~--~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~ 106 (197)
T 2wee_A 32 TVLGATLDVARQAGFDQLILTLGGA--ASAVRAAMA-LD--GTDVVVVEDVERGCAASLRVALARVHPRATGIVLMLGDQ 106 (197)
T ss_dssp EHHHHHHHHHHHTTCSEEEEEECTT--HHHHHHHSC-CT--TSEEEECC----CCHHHHHHHHTTSCTTEEEEEEEETTC
T ss_pred cHHHHHHHHHHhcCCCcEEEEeCCC--HHHHHHHhc-cC--CCEEEECCCcccCHHHHHHHHHHHhcccCCeEEEEeCCc
Confidence 5666666665443346777775442 123444443 32 46666644 3458899999999887 468999999998
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 107 P~ 108 (197)
T 2wee_A 107 PQ 108 (197)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 26
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=86.16 E-value=6 Score=26.75 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=45.3
Q ss_pred HHHHHHHhccccccC-CEEEEEeCCCCchHHHHHHHhccCCCcEEEEEcc--CCcchHHHHHHHHHhcCCCEEEEEcCCC
Q psy5323 28 GLIRARIAGAENAKG-DVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLK--ERAGLIRARIAGAENAKGDVLMFLDSHC 104 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~-~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~--~~~G~~~arn~G~~~a~g~~i~flD~d~ 104 (110)
.++...+..+..... .+|+++-+. +.+..++. .. .++++..+ ...|.+++. .|++....++++++++|.
T Consensus 28 pli~~~i~~~~~~~~~~~ivvv~~~----~~i~~~~~-~~--~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~lv~~~D~ 99 (245)
T 1h7e_A 28 PMIQHVYERALQVAGVAEVWVATDD----PRVEQAVQ-AF--GGKAIMTRNDHESGTDRLV-EVMHKVEADIYINLQGDE 99 (245)
T ss_dssp EHHHHHHHHHHTCTTCCEEEEEESC----HHHHHHHH-HT--TCEEEECCSCCSSHHHHHH-HHHHHSCCSEEEECCTTC
T ss_pred hHHHHHHHHHHhCCCCCeEEEECCc----HHHHHHHH-Hc--CCeEEeCCCccCCcHHHHH-HHHHhCCCCEEEEEcCCc
Confidence 466666666554443 688888654 33444444 33 36667643 345776655 567776788999999998
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 100 P~ 101 (245)
T 1h7e_A 100 PM 101 (245)
T ss_dssp TT
T ss_pred Cc
Confidence 64
No 27
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=85.25 E-value=5.6 Score=26.42 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=45.0
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEcc-CCcchHHHHHHHHHhcCCCEEEEEcCCCCc
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLK-ERAGLIRARIAGAENAKGDVLMFLDSHCEL 106 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~-~~~G~~~arn~G~~~a~g~~i~flD~d~~~ 106 (110)
.++...+..+... ..+|++|-+.+.. . .+. .++++..+ ...|.+.+...|++....++++++.+|..+
T Consensus 41 pll~~~l~~l~~~-~~~i~vv~~~~~~-~----~~~-----~~~~v~~~~~~~g~~~~i~~al~~~~~~~~lv~~~D~P~ 109 (201)
T 2e8b_A 41 KVIERVYETAKSV-FKEVYIVAKDREK-F----SFL-----NAPVVLDEFEESASIIGLYTALKHAKEENVFVLSGDLPL 109 (201)
T ss_dssp HHHHHHHHHHHTT-CSEEEEEESCSGG-G----GGG-----TCCEEECCCSSCCHHHHHHHHHHHCSSSEEEEEETTCTT
T ss_pred EHHHHHHHHHHHh-CCEEEEEeCcHHH-h----hcC-----CceEEecCCCCCCcHHHHHHHHHHcCCCCEEEEeCCcCc
Confidence 3444555555444 5788887665211 1 111 25566643 456999999999999888999999999864
No 28
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=82.56 E-value=5.1 Score=29.77 Aligned_cols=73 Identities=12% Similarity=0.093 Sum_probs=48.3
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCC-CEEEEEcCCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKG-DVLMFLDSHCE 105 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g-~~i~flD~d~~ 105 (110)
.++...+..+......+|+++-..+ .+.+..++. .. .++++..+...|.+.+...|++.... ++++++++|..
T Consensus 37 pli~~~l~~l~~~~~~~i~vv~~~~--~~~i~~~~~-~~--~~~~v~~~~~~g~~~~i~~~~~~~~~~~~~lv~~~D~P 110 (459)
T 4fce_A 37 PMVQHVIDAAMKLGAQHVHLVYGHG--GELLKKTLA-DP--SLNWVLQAEQLGTGHAMQQAAPHFADDEDILMLYGDVP 110 (459)
T ss_dssp EHHHHHHHHHHHHTCSCEEEEESSC--HHHHHHHC--------CEEECSSCCCHHHHHHHHGGGSCTTSEEEEEETTCT
T ss_pred eHHHHHHHHHHhCCCCcEEEEeCCC--HHHHHHHhc-cC--CcEEEeCCCCCCcHHHHHHHHHhcCCCCcEEEEeCCcc
Confidence 5666666665544456777775442 234444444 32 46777777788999999999998874 89999999984
No 29
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=81.40 E-value=8.4 Score=25.75 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=43.6
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEc--cCCcchHHHHHHHHHhcCCCEEEEEcCCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRL--KERAGLIRARIAGAENAKGDVLMFLDSHCE 105 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~--~~~~G~~~arn~G~~~a~g~~i~flD~d~~ 105 (110)
.++...+..+... ..+|+++-+. +.+..++. +. ++++.. ....|.+++. .+++....++++++++|..
T Consensus 28 pli~~~l~~~~~~-~~~i~v~~~~----~~i~~~~~-~~---~~~~~~~~~~~~g~~~~~-~~~~~~~~~~vlv~~~D~P 97 (234)
T 2y6p_A 28 PLIRWVVEGLVKT-GERVILATDS----ERVKEVVE-DL---CEVFLTPSDLPSGSDRVL-YVVRDLDVDLIINYQGDEP 97 (234)
T ss_dssp EHHHHHHHHHHTT-TSCEEEEESC----HHHHHHHT-TT---SEEEECCTTCCSHHHHHH-HHHTTCCCSEEEECCTTCC
T ss_pred EHHHHHHHHHHHh-CCEEEEECCh----HHHHHHHH-hc---eEEEECCcccccchHHHH-HHHHhCCCCEEEEecCCcC
Confidence 5666666666555 5677777554 23344444 32 344443 2356787776 5777777899999999984
Q ss_pred c
Q psy5323 106 L 106 (110)
Q Consensus 106 ~ 106 (110)
+
T Consensus 98 ~ 98 (234)
T 2y6p_A 98 F 98 (234)
T ss_dssp C
T ss_pred c
Confidence 3
No 30
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=79.36 E-value=13 Score=25.61 Aligned_cols=70 Identities=11% Similarity=0.120 Sum_probs=41.3
Q ss_pred HHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEE--ccCCcchHHHHHHHHHhc---CCCEEEEEcCC
Q psy5323 29 LIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIR--LKERAGLIRARIAGAENA---KGDVLMFLDSH 103 (110)
Q Consensus 29 ~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~--~~~~~G~~~arn~G~~~a---~g~~i~flD~d 103 (110)
++...+..+......+|+|+-|+ +.+..++. .+. ++++. .....|.+.+. .+++.. ..++++++++|
T Consensus 29 li~~~l~~l~~~~~~~ivVv~~~----~~i~~~~~-~~g--~~v~~~~~~~~~Gt~~~~-~~~~~l~~~~~d~vlv~~gD 100 (252)
T 3oam_A 29 MIQWVYEQAMQAGADRVIIATDD----ERVEQAVQ-AFG--GVVCMTSPNHQSGTERLA-EVVAKMAIPADHIVVNVQGD 100 (252)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESC----HHHHHHHH-HTT--CEEEECCTTCCSHHHHHH-HHHHHTTCCTTSEEEECCTT
T ss_pred HHHHHHHHHHhCCCCeEEEECCH----HHHHHHHH-HcC--CEEEEcCCCCCCcHHHHH-HHHHhcCcCCCCEEEEEeCC
Confidence 55555655554445788887653 33444444 433 45443 33456777644 344444 57899999999
Q ss_pred CCc
Q psy5323 104 CEL 106 (110)
Q Consensus 104 ~~~ 106 (110)
..+
T Consensus 101 ~Pl 103 (252)
T 3oam_A 101 EPL 103 (252)
T ss_dssp CTT
T ss_pred eee
Confidence 853
No 31
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=78.66 E-value=1.7 Score=33.99 Aligned_cols=47 Identities=51% Similarity=0.883 Sum_probs=37.5
Q ss_pred hhHHHHHHhhhCCCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC
Q psy5323 3 QGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 51 (110)
Q Consensus 3 ~~~l~~~~~~~lp~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~ 51 (110)
.+.|..|.++ .| .+++++...+.|+..++..++...++.=|+++|+.
T Consensus 160 ~~~l~~~~~~-~~-~v~vi~~~~n~G~~~A~N~G~~~A~gd~i~fLD~D 206 (570)
T 2d7i_A 160 KKPLEDYMAL-FP-SVRILRTKKREGLIRTRMLGASVATGDVITFLDSH 206 (570)
T ss_dssp THHHHHHHTT-ST-TEEEEECSSCCCHHHHHHHHHHHCCSSEEEECCSS
T ss_pred HHHHHHHHHh-CC-eEEEEECCCCCCHHHHHHHHHHhcCCCEEEEEcCC
Confidence 4556777664 44 68889988888999999999888888888888888
No 32
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=78.36 E-value=5.2 Score=27.85 Aligned_cols=79 Identities=6% Similarity=0.050 Sum_probs=50.1
Q ss_pred hHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhc--cCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCC
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQT--RLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHC 104 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~--~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~ 104 (110)
..++...+..+......+|+|+-+...... +..++.. ..+..+.++..+...|.+.|...+......+.++++.+|.
T Consensus 55 ~pli~~~l~~l~~~g~~~iivv~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~lv~~~D~ 133 (269)
T 4ecm_A 55 YPMIYHAVYKLKQCDITDIMIITGKEHMGD-VVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFVGNDRMVVILGDN 133 (269)
T ss_dssp EEHHHHHHHHHHHTTCCEEEEEECTTTHHH-HHHHHTTSGGGTCEEEEEECSSCCCHHHHHHTTHHHHTTSEEEEEETTE
T ss_pred EEHHHHHHHHHHHCCCCEEEEECChhhHHH-HHHHHhhccccCceEEEeeCCccCcHHHHHHHHHHhcCCCcEEEEeCCc
Confidence 446666666665554567777766422112 2333321 1222466666677789999999988887778899999997
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 134 ~~ 135 (269)
T 4ecm_A 134 IF 135 (269)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 33
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=78.02 E-value=15 Score=25.67 Aligned_cols=70 Identities=10% Similarity=0.153 Sum_probs=41.8
Q ss_pred HHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEE--ccCCcchHHHHHHHHHhc---CCCEEEEEcCC
Q psy5323 29 LIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIR--LKERAGLIRARIAGAENA---KGDVLMFLDSH 103 (110)
Q Consensus 29 ~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~--~~~~~G~~~arn~G~~~a---~g~~i~flD~d 103 (110)
++...+..+......+|+|+-|. +.+..++. .+. ++++. .....|.++ ...+++.. ..++++++++|
T Consensus 36 li~~~l~~l~~~~i~~VvVvt~~----~~i~~~~~-~~g--~~v~~~~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD 107 (256)
T 3tqd_A 36 MIQHVYESAIKSGAEEVVIATDD----KRIRQVAE-DFG--AVVCMTSSDHQSGTER-IAEAAVALGFEDDEIIVCLQGD 107 (256)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESC----HHHHHHHH-HTT--CEEEECCTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTT
T ss_pred HHHHHHHHHHhCCCCEEEEECCH----HHHHHHHH-HcC--CeEEEeCCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCC
Confidence 55555655554445788887653 33444444 443 45543 334457665 34566665 57899999999
Q ss_pred CCc
Q psy5323 104 CEL 106 (110)
Q Consensus 104 ~~~ 106 (110)
..+
T Consensus 108 ~Pl 110 (256)
T 3tqd_A 108 EPL 110 (256)
T ss_dssp CCC
T ss_pred ccc
Confidence 854
No 34
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=77.48 E-value=11 Score=27.82 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=49.3
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC-CCEEEEEcCCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK-GDVLMFLDSHCE 105 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~-g~~i~flD~d~~ 105 (110)
.++...+..+......+++++-+.. .+.+..++. .. .++++..+...|.+.+...+++... .++++++++|..
T Consensus 34 pli~~~l~~l~~~~~~~iivv~~~~--~~~i~~~~~-~~--~~~~v~~~~~~g~~~~~~~~~~~~~~~~~vlv~~~D~P 107 (456)
T 2v0h_A 34 PMVKHVIDTAHQLGSENIHLIYGHG--GDLMRTHLA-NE--QVNWVLQTEQLGTAHAVQQAAPFFKDNENIVVLYGDAP 107 (456)
T ss_dssp EHHHHHHHHHHHTTCSCEEEEECTT--HHHHHHHTT-TC--CCEEEECSCCCCHHHHHHHHGGGCCTTSEEEEEETTCT
T ss_pred cHHHHHHHHHHhCCCCcEEEEeCCC--HHHHHHHhh-cC--CcEEEeCCCCCCcHHHHHHHHHhcCCCCeEEEEcCCcc
Confidence 5666666665544346777665542 133444444 22 3777777777899999999988875 689999999985
No 35
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=76.86 E-value=7.9 Score=29.51 Aligned_cols=80 Identities=10% Similarity=0.115 Sum_probs=51.9
Q ss_pred CCchHHHHHHHhccccccCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCC---EEE
Q psy5323 24 KERAGLIRARIAGAENAKGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGD---VLM 98 (110)
Q Consensus 24 ~~~~~~i~~~l~~~~~~~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~---~i~ 98 (110)
.+++ +|.-.++.+......||++|=-+ +...+.+..+.. ++..+++++.+++..|.+.|...+......+ .+.
T Consensus 38 ~gkp-~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~-~~~~~i~~~~q~~~lGTa~Av~~a~~~l~~~~~~~~l 115 (501)
T 3st8_A 38 AGRS-MLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELAD-TLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVV 115 (501)
T ss_dssp TTEE-HHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHH-HHTSCCEEEECSSCCCHHHHHHHHHTTSCTTCCSEEE
T ss_pred CChh-HHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHH-hcCCcEEEEEcCCCCCcHHHHHHHHHHhcccccccee
Confidence 4443 66666666655556788888765 333344443333 3333689998888899999999998877543 455
Q ss_pred EEcCCCC
Q psy5323 99 FLDSHCE 105 (110)
Q Consensus 99 flD~d~~ 105 (110)
++.+|..
T Consensus 116 vl~gd~~ 122 (501)
T 3st8_A 116 VTSGDTP 122 (501)
T ss_dssp EEETTCT
T ss_pred eecCcce
Confidence 6666654
No 36
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=75.78 E-value=15 Score=24.50 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=43.7
Q ss_pred HHHHHHHhcccccc-CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEcc-----CCcchHHHHHHHHHhcC--CCEEEE
Q psy5323 28 GLIRARIAGAENAK-GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLK-----ERAGLIRARIAGAENAK--GDVLMF 99 (110)
Q Consensus 28 ~~i~~~l~~~~~~~-~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~-----~~~G~~~arn~G~~~a~--g~~i~f 99 (110)
.++...+..+.... ..+|+++-+.+ .+..+.. ... ++++..+ ...|...+...|++... .+++++
T Consensus 30 pll~~~l~~~~~~~~~~~ivvv~~~~----~i~~~~~-~~~--~~~~~~~~~~~~~~~g~~~sv~~~l~~~~~~~d~vlv 102 (228)
T 1ezi_A 30 SLLGHTINAAISSKCFDRIIVSTDGG----LIAEEAK-NFG--VEVVLRPAELASDTASSISGVIHALETIGSNSGTVTL 102 (228)
T ss_dssp EHHHHHHHHHHHHCCCSEEEEEESCH----HHHHHHH-HTT--CEEEECCC------CHHHHHHHHHHHHHTCCSEEEEE
T ss_pred CHHHHHHHHHHhCCCCCEEEEECCCH----HHHHHHH-HcC--CEEEeCchHHcCCCCChHHHHHHHHHHhCCCCCEEEE
Confidence 45666666555443 47888887642 2233443 333 4555443 34566777888888773 589999
Q ss_pred EcCCCCc
Q psy5323 100 LDSHCEL 106 (110)
Q Consensus 100 lD~d~~~ 106 (110)
+++|..+
T Consensus 103 ~~~D~P~ 109 (228)
T 1ezi_A 103 LQPTSPL 109 (228)
T ss_dssp CCTTCTT
T ss_pred EcCCCCc
Confidence 9999754
No 37
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=74.54 E-value=5.4 Score=27.79 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=49.9
Q ss_pred CCchHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhcc-----------------------CCCcEEEEEccCCcc
Q psy5323 24 KERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTR-----------------------LPPKVRLIRLKERAG 80 (110)
Q Consensus 24 ~~~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~-----------------------~~~~~~~i~~~~~~G 80 (110)
.++ .+|...+..+......+|+||-.... +.+..++... ....+.++..+...|
T Consensus 31 ~gk-pli~~~l~~l~~~gi~~i~vv~~~~~--~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G 107 (281)
T 3juk_A 31 VDK-PLIQYAVEEAMEAGCEVMAIVTGRNK--RSLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKG 107 (281)
T ss_dssp SSS-BHHHHHHHHHHHHTCCEEEEEECTTH--HHHHHHTSCCC--------CCHHHHHHHHHHHHHHCEEEEEECSSCCC
T ss_pred CCE-EHHHHHHHHHHhCCCCEEEEEecCCH--HHHHHHHhcchhhhhhhhcccchhhhhhhhccccCccEEEEecCCCCC
Confidence 344 66776676665544567777754311 1222222200 112466777777789
Q ss_pred hHHHHHHHHHhcCCCEEEEEcCCCCcC
Q psy5323 81 LIRARIAGAENAKGDVLMFLDSHCELG 107 (110)
Q Consensus 81 ~~~arn~G~~~a~g~~i~flD~d~~~~ 107 (110)
.+.|...+......+.++++.+|..+.
T Consensus 108 t~~al~~a~~~l~~~~~lv~~~D~~~~ 134 (281)
T 3juk_A 108 LGHAILTGEALIGNEPFAVILADDLCI 134 (281)
T ss_dssp HHHHHHHTHHHHCSSCEEEECTTEEEE
T ss_pred cHHHHHHHHHHcCCCCEEEEeCCeecc
Confidence 999999998888667788888887443
No 38
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=73.74 E-value=14 Score=27.44 Aligned_cols=72 Identities=6% Similarity=0.071 Sum_probs=49.2
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC--CCEEEEEcCCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSHCE 105 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~--g~~i~flD~d~~ 105 (110)
.++...+..+......+|+++-... .+.+.+++. . .++++..+...|.+.+.-.|++... .++++++++|..
T Consensus 40 pli~~~l~~l~~~g~~~iivv~~~~--~~~i~~~~~-~---~i~~v~~~~~~G~~~sl~~a~~~~~~~~~~vlv~~~D~P 113 (468)
T 1hm9_A 40 SMLEHVFRSVGAIQPEKTVTVVGHK--AELVEEVLA-G---QTEFVTQSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTP 113 (468)
T ss_dssp EHHHHHHHHHHTTCCSEEEEEECTT--HHHHHHSSS-S---SSEEEECSSCCCHHHHHHTTHHHHTTCCSEEEEEETTCT
T ss_pred cHHHHHHHHHHhcCCCCEEEEECCC--HHHHHHHhC-C---CcEEEeCCccCChHHHHHHHHHHhccCCCeEEEEeCCcc
Confidence 5677667666554456777775442 123333333 1 4777777777799999888888775 689999999985
No 39
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=72.97 E-value=21 Score=24.99 Aligned_cols=70 Identities=10% Similarity=0.147 Sum_probs=40.1
Q ss_pred HHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEE--ccCCcchHHHHHHHHHhc---CCCEEEEEcCC
Q psy5323 29 LIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIR--LKERAGLIRARIAGAENA---KGDVLMFLDSH 103 (110)
Q Consensus 29 ~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~--~~~~~G~~~arn~G~~~a---~g~~i~flD~d 103 (110)
++...+..+......+|+|+-|. +.+..++. .+. ++++. .....|.+. ...+++.. ..++++++++|
T Consensus 45 mi~~~l~~l~~~~i~~IvV~t~~----~~i~~~~~-~~g--~~v~~~~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD 116 (264)
T 3k8d_A 45 MIVHVLERARESGAERIIVATDH----EDVARAVE-AAG--GEVCMTRADHQSGTER-LAEVVEKCAFSDDTVIVNVQGD 116 (264)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESC----HHHHHHHH-HTT--CEEEECCTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTT
T ss_pred HHHHHHHHHHhCCCCEEEEECCH----HHHHHHHH-HcC--CEEEEecCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCC
Confidence 55555665554445788887653 23334444 443 45543 334456554 33344433 67999999999
Q ss_pred CCc
Q psy5323 104 CEL 106 (110)
Q Consensus 104 ~~~ 106 (110)
..+
T Consensus 117 ~Pl 119 (264)
T 3k8d_A 117 EPM 119 (264)
T ss_dssp CTT
T ss_pred ccc
Confidence 854
No 40
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=72.82 E-value=19 Score=25.15 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=31.3
Q ss_pred cEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCCCcC
Q psy5323 69 KVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCELG 107 (110)
Q Consensus 69 ~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~~~~ 107 (110)
++.++..+...|.+.|...+......+.++++.+|..+.
T Consensus 107 ~i~~~~~~~~~Gt~~al~~a~~~~~~~~~lv~~~D~~~~ 145 (297)
T 2ux8_A 107 NIAYVRQQEPMGLGHAVWCARDIVGDEPFAVLLPDDFMF 145 (297)
T ss_dssp SEEEEECCSCCCHHHHHHTTHHHHCSSCEEEECTTEEEE
T ss_pred ceEEEeCCCCCChHHHHHHHHHHcCCCcEEEEeCCeecC
Confidence 477777777789999998888877668888899997653
No 41
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=72.69 E-value=15 Score=24.64 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=42.6
Q ss_pred HHHHHHHhcccccc-CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEcc-----CCcchHHHHHHHHHhc-CCCEEEEE
Q psy5323 28 GLIRARIAGAENAK-GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLK-----ERAGLIRARIAGAENA-KGDVLMFL 100 (110)
Q Consensus 28 ~~i~~~l~~~~~~~-~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~-----~~~G~~~arn~G~~~a-~g~~i~fl 100 (110)
.++...+..+.... ..+|+++-+.+ .+..++. +. .++++..+ ...|...+...|++.. ..++++++
T Consensus 29 pli~~~i~~~~~~~~~~~ivv~~~~~----~i~~~~~-~~--g~~~~~~~~~~~~~~~~~~~~v~~al~~~~~~d~vlv~ 101 (229)
T 1qwj_A 29 PLIGWVLRAALDAGVFQSVWVSTDHD----EIENVAK-QF--GAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNI 101 (229)
T ss_dssp EHHHHHHHHHHHHTCCSEEEEEESCH----HHHHHHH-HT--TCEEEECCGGGSSTTCCHHHHHHHHHTTCTTCSEEEEE
T ss_pred EHHHHHHHHHHhCCCcCEEEEECChH----HHHHHHH-Hc--CCEEEeChhhhcCCCCcHHHHHHHHHHhcCCCCEEEEe
Confidence 45555565554443 36788776542 2333444 33 35556543 2234345666777776 57899999
Q ss_pred cCCCCc
Q psy5323 101 DSHCEL 106 (110)
Q Consensus 101 D~d~~~ 106 (110)
++|..+
T Consensus 102 ~~D~Pl 107 (229)
T 1qwj_A 102 QATSPC 107 (229)
T ss_dssp CTTCTT
T ss_pred cCCCCc
Confidence 999864
No 42
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=69.32 E-value=19 Score=23.61 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=43.8
Q ss_pred hHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccC-CcchHHHHHHHHHhcCC-CEEEEEcCCC
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKE-RAGLIRARIAGAENAKG-DVLMFLDSHC 104 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~-~~G~~~arn~G~~~a~g-~~i~flD~d~ 104 (110)
..++...+..+... ++++|-... .+.+..++. ..+ ++.++. ..|...+...|++...+ ++++++++|.
T Consensus 28 ~pll~~~l~~l~~~---~ivvv~~~~--~~~~~~~~~----~~~-~v~~~~~~~G~~~si~~al~~~~~~~~vlv~~~D~ 97 (197)
T 3d5n_A 28 TPIIMRTIRIYGDL---EKIIIVGKY--VNEMLPLLM----DQI-VIYNPFWNEGISTSLKLGLRFFKDYDAVLVALGDM 97 (197)
T ss_dssp SBHHHHHHHHTTTS---BCCEEECTT--HHHHGGGCT----TSC-EEECTTGGGCHHHHHHHHHHHTTTSSEEEEEETTC
T ss_pred eEHHHHHHHHHHhC---CEEEEECCC--HHHHHHHhc----CCE-EEECCCCCCCHHHHHHHHHHhhccCCcEEEEeCCc
Confidence 35666666665444 666654332 122332222 146 665443 35888999999998866 7999999998
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 98 P~ 99 (197)
T 3d5n_A 98 PF 99 (197)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 43
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=68.94 E-value=26 Score=24.34 Aligned_cols=71 Identities=11% Similarity=0.044 Sum_probs=40.6
Q ss_pred HHHHHHH-hccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEE--ccCCcchHHHHHHHHHhc---CCCEEEEEc
Q psy5323 28 GLIRARI-AGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIR--LKERAGLIRARIAGAENA---KGDVLMFLD 101 (110)
Q Consensus 28 ~~i~~~l-~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~--~~~~~G~~~arn~G~~~a---~g~~i~flD 101 (110)
.++...+ ..+......+|+++-|. +.+..++. .+. ++++. .....|.. +...+++.. ..+++++++
T Consensus 27 Pli~~~i~~~~~~~~~~~vvVvt~~----~~i~~~~~-~~g--~~v~~~~~~~~~Gt~-~i~~a~~~~~~~~~d~vlv~~ 98 (253)
T 4fcu_A 27 PMILRVVDQAKKVEGFDDLCVATDD----ERIAEICR-AEG--VDVVLTSADHPSGTD-RLSEVARIKGWDADDIIVNVQ 98 (253)
T ss_dssp EHHHHHHHHHHTCTTCCEEEEEESC----HHHHHHHH-TTT--CCEEECCTTCCCHHH-HHHHHHHHHTCCTTCEEEECC
T ss_pred EhHHHHHHHHHHhcCCCEEEEECCH----HHHHHHHH-HcC--CeEEEeCCCCCChHH-HHHHHHHhcCcCCCCEEEEEe
Confidence 3555566 55544445788887654 23344444 443 44443 33345653 344556555 358999999
Q ss_pred CCCCc
Q psy5323 102 SHCEL 106 (110)
Q Consensus 102 ~d~~~ 106 (110)
+|..+
T Consensus 99 gD~Pl 103 (253)
T 4fcu_A 99 GDEPL 103 (253)
T ss_dssp TTCTT
T ss_pred CCccc
Confidence 99864
No 44
>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21
Probab=67.73 E-value=21 Score=23.65 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=41.6
Q ss_pred HHHHHHhccccccCCEE-EEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCCCc
Q psy5323 29 LIRARIAGAENAKGDVL-MFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCEL 106 (110)
Q Consensus 29 ~i~~~l~~~~~~~~~Ei-ivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~~~ 106 (110)
++...+..+.......+ +++.+...... .. .++++.++ .|++.+...|++.+ .+.++++-+|+..
T Consensus 35 ll~~vl~~l~~~~~~~v~vvv~~~~~~~~---------~~-~~~~v~~~--~gl~~sl~~a~~~~-~~~vlvi~~D~P~ 100 (211)
T 2i5e_A 35 MLNQVISSLKGAGIEQVDILSPSVYGLEE---------MT-EARVLLDE--KDLNEALNRYLKEA-EEPVLIVMADLPL 100 (211)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESSCTTCSS---------CC-SSEEEECC--SCHHHHHHHHHHHC-CSCEEEECSCCTT
T ss_pred HHHHHHHHHHHcCCceEEEEEcCcHHHHh---------hc-CCEEEECC--CCHHHHHHHHHHhc-CCCEEEEcCCcCC
Confidence 34444544443334667 77755521111 11 46777766 79999999999887 6788899899864
No 45
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=67.20 E-value=24 Score=23.57 Aligned_cols=74 Identities=5% Similarity=0.086 Sum_probs=44.4
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCC-cchHHHHHHHHHhcCCCEEEEEcCCCCc
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKER-AGLIRARIAGAENAKGDVLMFLDSHCEL 106 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~-~G~~~arn~G~~~a~g~~i~flD~d~~~ 106 (110)
.++...+..+... ..+|++|- +. .....+.+.. +.+.+++++.++.. .|.+.+...|++....+ ++++.+|..+
T Consensus 46 pli~~~l~~l~~~-~~~i~vv~-~~-~~~~~~~~~~-~~~~~~~~v~~~~~~~g~~~~i~~a~~~~~~~-~lv~~~D~p~ 120 (232)
T 2xme_A 46 EIILRTMKLLSPH-VSEFIIVA-SR-YADDIDAFLK-DKGFNYKIVRHDRPEKGNGYSLLVAKNHVEDR-FILTMGDHVY 120 (232)
T ss_dssp EHHHHHHHHHGGG-EEEEEEEE-ST-THHHHHHHHT-TSCCCEEEEECSCGGGCHHHHHHTTGGGCCSS-EEEEETTEEE
T ss_pred EHHHHHHHHHHHh-CCEEEEEe-CC-hHHHHHHHHH-hcCCcEEEEECCCCCCCcHHHHHHHHHHCCCC-EEEEcCCccc
Confidence 4566666665544 56777776 41 1122222233 33325888876543 68888988898888755 4567787653
No 46
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=65.11 E-value=4.7 Score=30.62 Aligned_cols=35 Identities=54% Similarity=0.917 Sum_probs=30.2
Q ss_pred eEEEEecCCchHHHHHHHhccccccCCEEEEEeCC
Q psy5323 17 KVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 51 (110)
Q Consensus 17 ~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~ 51 (110)
.++++++..+.|+..++..++...++.=|+++|+.
T Consensus 122 ~v~vi~~~~n~G~~~A~N~G~~~A~gd~i~flD~D 156 (501)
T 2ffu_A 122 KVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSH 156 (501)
T ss_dssp TEEEEECSSCCHHHHHHHHHHHHCCSSEEEECCSS
T ss_pred CEEEEECCCCcCHHHHHHHHHHhcCCCEEEEECCC
Confidence 57888888888999999999888888888899888
No 47
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=64.07 E-value=28 Score=23.66 Aligned_cols=74 Identities=11% Similarity=0.154 Sum_probs=44.3
Q ss_pred HHHHHHHhcccccc-CCEEEEEeCC-C--CchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC-------CCE
Q psy5323 28 GLIRARIAGAENAK-GDVLMFLDSH-Y--ELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK-------GDV 96 (110)
Q Consensus 28 ~~i~~~l~~~~~~~-~~EiivVDD~-d--~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~-------g~~ 96 (110)
.++...+..+.... ..+|+||-+. . .....+..+.. +..+.++.. ..|...+...|+.... .++
T Consensus 33 pll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~sv~~al~~l~~~~~~~~~~~ 107 (246)
T 3f1c_A 33 PIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYIS---DDRIVVIEG--GEDRNETIMNGIRFVEKTYGLTDDDI 107 (246)
T ss_dssp EHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCC---CTTEEEEEC--CSSHHHHHHHHHHHHHHHTCCCTTCE
T ss_pred eHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCC---CCCEEEECC--CCchHHHHHHHHHHHhhhhcCCCCCE
Confidence 56777777665544 5678777655 2 12233333321 124666643 2356667777777653 589
Q ss_pred EEEEcCCCCc
Q psy5323 97 LMFLDSHCEL 106 (110)
Q Consensus 97 i~flD~d~~~ 106 (110)
++++|+|..+
T Consensus 108 vlv~~~d~Pl 117 (246)
T 3f1c_A 108 IVTHDAVRPF 117 (246)
T ss_dssp EEEEETTCTT
T ss_pred EEEecCcccC
Confidence 9999999754
No 48
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=63.20 E-value=36 Score=23.89 Aligned_cols=86 Identities=9% Similarity=0.030 Sum_probs=50.0
Q ss_pred cCCchHHHHHHHhcccccc---CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCc-----------chHHHHH
Q psy5323 23 LKERAGLIRARIAGAENAK---GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERA-----------GLIRARI 86 (110)
Q Consensus 23 ~~~~~~~i~~~l~~~~~~~---~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~-----------G~~~arn 86 (110)
..+-...+...+.|+.... ...+.|+.|+ +...+.+..... ..+..++++..+... ...-+|-
T Consensus 13 d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~rl 91 (276)
T 3tzt_A 13 DENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLK-KFSYTLYPIRATDDLFSFAKVTDRYPKEMYYRL 91 (276)
T ss_dssp CGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHH-TTTCEEEEEECC-------------CHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHH-HcCCEEEEEEeCHHHHhcCccccccCHHHHHHH
Confidence 4444555666666764332 4567788888 445567777666 554356666543311 1334455
Q ss_pred HHHHhc--CCCEEEEEcCCCCcCCC
Q psy5323 87 AGAENA--KGDVLMFLDSHCELGTN 109 (110)
Q Consensus 87 ~G~~~a--~g~~i~flD~d~~~~~~ 109 (110)
.-...- .=+-+++||+|..+..+
T Consensus 92 ~~~~l~p~~~~kvlylD~D~iv~~d 116 (276)
T 3tzt_A 92 LAGEFLPENLGEILYLDPDMLVINP 116 (276)
T ss_dssp THHHHSCTTCCEEEEECSSEEECSC
T ss_pred HHHHHcccccCeEEEEeCCeeecCC
Confidence 445554 34789999999877543
No 49
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=62.94 E-value=34 Score=23.54 Aligned_cols=81 Identities=10% Similarity=0.060 Sum_probs=50.3
Q ss_pred CCchHHHHHHHhcccc-ccCCEEEEEeCC-CCchHHHHHHHhccCC-CcE-EEEEccCCcchHHHHHHHHHhc------C
Q psy5323 24 KERAGLIRARIAGAEN-AKGDVLMFLDSH-YELQGKLDYYIQTRLP-PKV-RLIRLKERAGLIRARIAGAENA------K 93 (110)
Q Consensus 24 ~~~~~~i~~~l~~~~~-~~~~EiivVDD~-d~t~~~l~~~~~~~~~-~~~-~~i~~~~~~G~~~arn~G~~~a------~ 93 (110)
.++ .++...+..+.. ....+|++|--. ......+...+. +.. ..+ .++..+...|.+.|...+.... .
T Consensus 28 ~gk-pli~~~l~~l~~~~gi~~iivv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Gt~~av~~a~~~l~~~~~~~ 105 (255)
T 4evw_A 28 HGQ-TLFEHSVNSFAAYFASTPFLFIVRNVYDTAVFVREKAT-QLGIKQFYIAELHTETRGQAETVTLGLEELAKQGVDY 105 (255)
T ss_dssp TTE-EHHHHHHGGGGGGTTTSCEEEEEESSTTHHHHHHHHHH-HHTCSSEEEEEESSCCSSHHHHHHHHHHHHHHTTCCC
T ss_pred CCe-EHHHHHHHHHhccCCCceEEEEECchhhhHHHHHHHHH-HcCCCCceEEEeCCCCCCHHHHHHHHHHHHhhcccCC
Confidence 344 688888888776 445676666544 334445554443 221 123 3445566779999999998876 2
Q ss_pred CCEEEEEcCCCCc
Q psy5323 94 GDVLMFLDSHCEL 106 (110)
Q Consensus 94 g~~i~flD~d~~~ 106 (110)
.+-++++.+|..+
T Consensus 106 ~~~~lV~~gD~l~ 118 (255)
T 4evw_A 106 QGSITVFNIDTFR 118 (255)
T ss_dssp CSCEEECCTTEEC
T ss_pred CCcEEEEeCCEEE
Confidence 4457778888754
No 50
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=60.78 E-value=40 Score=23.53 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=30.8
Q ss_pred cEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCCCcC
Q psy5323 69 KVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCELG 107 (110)
Q Consensus 69 ~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~~~~ 107 (110)
.+.++..+...|.+.|...+......+.++++.+|..+.
T Consensus 103 ~i~~~~~~~~~Gt~~al~~a~~~~~~~~~lv~~~D~~~~ 141 (302)
T 2e3d_A 103 TIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILD 141 (302)
T ss_dssp EEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEEC
T ss_pred ceEEeeCCccCCHHHHHHHHHHHcCCCcEEEEcCCcccc
Confidence 466777777789999999888877667888889987654
No 51
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=59.93 E-value=28 Score=24.78 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=47.0
Q ss_pred cCCchHHHHHHHhcc-ccc--cCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCC------------cchHHHH
Q psy5323 23 LKERAGLIRARIAGA-ENA--KGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKER------------AGLIRAR 85 (110)
Q Consensus 23 ~~~~~~~i~~~l~~~-~~~--~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~------------~G~~~ar 85 (110)
..+-...+...+.|+ ... ....+.+++|+ +...+.+..... .+...++++..... ....-+|
T Consensus 8 d~~Y~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~y~R 86 (311)
T 1g9r_A 8 DDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLR-GGGGNIRFIDVNPEDFAGFPLNIRHISITTYAR 86 (311)
T ss_dssp CGGGHHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSG-GGTTTEEEEECCGGGGTTSCCCCTTCCGGGGGG
T ss_pred CHhHHHHHHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHH-HcCCEEEEEEcCHHHHhcCccccccCCHHHHHH
Confidence 344444455566666 322 24567777887 345566666655 43335666653211 1133444
Q ss_pred HHHHHhc-CCCEEEEEcCCCCcCC
Q psy5323 86 IAGAENA-KGDVLMFLDSHCELGT 108 (110)
Q Consensus 86 n~G~~~a-~g~~i~flD~d~~~~~ 108 (110)
-.-...- .=+-+++||+|..+..
T Consensus 87 l~l~~ll~~~~kvlyLD~D~iv~~ 110 (311)
T 1g9r_A 87 LKLGEYIADCDKVLYLDIDVLVRD 110 (311)
T ss_dssp GGHHHHCCSCSCEEEECSSEEECS
T ss_pred HHHHHHhhhcCEEEEEcCCeEecc
Confidence 4444433 3467999999987654
No 52
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=59.86 E-value=34 Score=22.55 Aligned_cols=74 Identities=9% Similarity=-0.026 Sum_probs=44.6
Q ss_pred hHHHHHHHhcccccc-CCEEEEEeCC-CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhc-------CCCEE
Q psy5323 27 AGLIRARIAGAENAK-GDVLMFLDSH-YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENA-------KGDVL 97 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~-~~EiivVDD~-d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a-------~g~~i 97 (110)
..++...+..+.... ..+|++|-.. ......+..+ ..+ .+.++ ....|...+.-.|+... ..+++
T Consensus 34 kpli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~---~~~-~i~~~--~~~~~~~~si~~~l~~~~~~~~~~~~~~v 107 (231)
T 1vgw_A 34 KTVLEHVLGIFERHEAVDLTVVVVSPEDTFADKVQTA---FPQ-VRVWK--NGGQTRAETVRNGVAKLLETGLAAETDNI 107 (231)
T ss_dssp EEHHHHHHHHHHTCTTCCEEEEECCTTCSTHHHHHHH---CTT-SEEEC--CCCSSHHHHHHHHHHHHHHHSSSCTTSEE
T ss_pred eEHHHHHHHHHHcCCCCCeEEEEECccHHHHHHHHhc---CCC-ceEEE--cCCCcHHHHHHHHHHHHhhhccCCCCCEE
Confidence 346666666655443 4688887655 3211112221 112 46654 34457888888888766 46899
Q ss_pred EEEcCCCCc
Q psy5323 98 MFLDSHCEL 106 (110)
Q Consensus 98 ~flD~d~~~ 106 (110)
+++++|..+
T Consensus 108 lv~~~D~p~ 116 (231)
T 1vgw_A 108 LVHDAARCC 116 (231)
T ss_dssp EECCTTCTT
T ss_pred EEEcCCccc
Confidence 999998754
No 53
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=58.99 E-value=27 Score=25.43 Aligned_cols=88 Identities=8% Similarity=0.071 Sum_probs=57.0
Q ss_pred CeEEEEecCCchHHHHHHHhcccccc-CCEEEEEeCC--CCchH-HHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHh
Q psy5323 16 PKVRLIRLKERAGLIRARIAGAENAK-GDVLMFLDSH--YELQG-KLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAEN 91 (110)
Q Consensus 16 ~~v~ii~~~~~~~~i~~~l~~~~~~~-~~EiivVDD~--d~t~~-~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~ 91 (110)
+...++.+++|...+.+.+....... ..||+||=.+ ..... ....+ . ..+..+++++.+.|. ...|-.-...
T Consensus 29 ~FTvvi~ty~R~~~L~~lv~~~~~~~~v~~IvVvWn~~~~~pp~~~~~~~-~-~~~vpv~v~~~~~ns--LnnRF~p~~~ 104 (293)
T 1omz_A 29 SFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSL-G-PHPIPVIFKPQTANK--MRNRLQVFPE 104 (293)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHT-C-CCSSCEEEEECSSCC--GGGGGSCCTT
T ss_pred ceEEEEEeecccHHHHHHHHHHhcCCCCCeEEEEeCCCCCCCChhhcccc-C-CCCccEEEEeCCCCc--hhhccCCCcc
Confidence 46778888889888888777654333 4677766444 22222 22222 1 112358888877662 3567777788
Q ss_pred cCCCEEEEEcCCCCcC
Q psy5323 92 AKGDVLMFLDSHCELG 107 (110)
Q Consensus 92 a~g~~i~flD~d~~~~ 107 (110)
...+-|..+|.|..+.
T Consensus 105 i~T~AVLslDDDv~l~ 120 (293)
T 1omz_A 105 VETNAVLMVDDDTLIS 120 (293)
T ss_dssp CCSSEEEEECTTEEEC
T ss_pred CCcCEEEEEcCCCCCC
Confidence 8999999999997643
No 54
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=58.83 E-value=37 Score=22.60 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=43.9
Q ss_pred HHHHHHHhcccccc-CCEEEEEeCC-C-CchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC-CCEEEEEcCC
Q psy5323 28 GLIRARIAGAENAK-GDVLMFLDSH-Y-ELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK-GDVLMFLDSH 103 (110)
Q Consensus 28 ~~i~~~l~~~~~~~-~~EiivVDD~-d-~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~-g~~i~flD~d 103 (110)
.++...+..+.... ..+|++|-+. + .... +..+ ..+ .++++.. ..|...+...|+.... .++++++++|
T Consensus 36 pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~~~~---~~~-~v~~~~~--~~g~~~~i~~al~~~~~~~~~lv~~~D 108 (236)
T 1i52_A 36 TILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-LPLA---NHP-QITVVDG--GDERADSVLAGLKAAGDAQWVLVHDAA 108 (236)
T ss_dssp EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-SGGG---GCT-TEEEEEC--CSSHHHHHHHHHHTSTTCSEEEECCTT
T ss_pred EHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-HHhc---CCC-CEEEECC--CCCHHHHHHHHHHhcCCCCEEEEEcCc
Confidence 45666666554433 3577777665 3 3222 2211 112 4666542 3588888888888874 6899999999
Q ss_pred CCc
Q psy5323 104 CEL 106 (110)
Q Consensus 104 ~~~ 106 (110)
..+
T Consensus 109 ~P~ 111 (236)
T 1i52_A 109 RPC 111 (236)
T ss_dssp CTT
T ss_pred ccc
Confidence 754
No 55
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=58.52 E-value=27 Score=23.09 Aligned_cols=74 Identities=5% Similarity=0.025 Sum_probs=42.8
Q ss_pred HHHHHHHhccccc-cCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCC--CEEEEEcCCC
Q psy5323 28 GLIRARIAGAENA-KGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKG--DVLMFLDSHC 104 (110)
Q Consensus 28 ~~i~~~l~~~~~~-~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g--~~i~flD~d~ 104 (110)
.++...+..+... ...+|++|-+... ....+.+.. .....++++. ...|...+...|+..... ++++++|+|.
T Consensus 33 pli~~~l~~l~~~~~~~~ivvv~~~~~-~~~~~~~~~-~~~~~v~~~~--~~~~~~~sv~~al~~~~~~~~~vl~~d~d~ 108 (228)
T 2yc3_A 33 PIALYSFFTFSRMPEVKEIVVVCDPFF-RDIFEEYEE-SIDVDLSFAI--PGKERQDSVYSGLQEIDVNSELVCIHDSAR 108 (228)
T ss_dssp EHHHHHHHHHHHCTTEEEEEEECCGGG-HHHHHTTTT-TSSSEEEEEC--CCSSHHHHHHHHHTTSCTTCSEEEEEETTC
T ss_pred EHHHHHHHHHHcCCCCCeEEEEEChHH-HHHHHHHHH-hCCCcEEEEC--CCCCHHHHHHHHHHhhccCCCEEEEecCCC
Confidence 4666666655544 2357777755411 122222222 2222355554 235888888888887654 7899999996
Q ss_pred C
Q psy5323 105 E 105 (110)
Q Consensus 105 ~ 105 (110)
.
T Consensus 109 P 109 (228)
T 2yc3_A 109 P 109 (228)
T ss_dssp T
T ss_pred c
Confidence 4
No 56
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=56.84 E-value=16 Score=24.22 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=44.8
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccC-C-cchHHHHHHHHHhcCCCEEEEEcCCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKE-R-AGLIRARIAGAENAKGDVLMFLDSHCE 105 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~-~-~G~~~arn~G~~~a~g~~i~flD~d~~ 105 (110)
.++...+..+.. ...+|+||-+.+. . .+ . .. .++++..+. . .|...+...|++....++++++++|..
T Consensus 34 pli~~~l~~l~~-~~~~ivvv~~~~~--~---~~-~-~~--~~~~v~~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P 103 (201)
T 1e5k_A 34 PLWQHVADALMT-QLSHVVVNANRHQ--E---IY-Q-AS--GLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTP 103 (201)
T ss_dssp EHHHHHHHHHHH-HCSCEEEECSSSH--H---HH-H-TT--SCCEECCCTTCCCSHHHHHHHHHHHCCSSEEEEEETTCT
T ss_pred eHHHHHHHHHHh-hCCEEEEEcCCcH--H---HH-h-hc--CCeEEecCCCCCCCHHHHHHHHHHhCCCCcEEEEeCCcC
Confidence 456666655542 2567777754421 1 12 2 22 356665542 2 689999999999999999999999985
No 57
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=54.07 E-value=46 Score=22.23 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=44.5
Q ss_pred hHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEcc-CCcchHHHHHHHHHhcCCCEEEEEcCCCC
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLK-ERAGLIRARIAGAENAKGDVLMFLDSHCE 105 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~-~~~G~~~arn~G~~~a~g~~i~flD~d~~ 105 (110)
..++...+..+... +|++|-.. .+.++.+.. .. .++++... ...|...+...|++.+ .+++ ++++|..
T Consensus 26 ~pli~~~~~~l~~~---~vvvv~~~---~~~~~~~~~-~~--~~~~v~d~~~~~G~~~si~~gl~~~-~~~v-v~~~D~P 94 (208)
T 3ngw_A 26 KKLIEWVLEKYSPF---QTVFVCRD---EKQAEKLSS-RY--EAEFIWDLHKGVGSIAGIHAALRHF-GSCV-VAAIDMP 94 (208)
T ss_dssp EEHHHHHHHHHTTS---EEEEECSS---HHHHHHHHT-TS--CSCEECCTTCCCSHHHHHHHHHHHH-SSEE-EEETTCT
T ss_pred eeHHHHHHHHhcCC---CEEEEECC---HHHHHHHHH-hc--CCeEEecCCCCCChHHHHHHHHHHc-CCCE-EEECCcc
Confidence 35666666665444 88887543 122333332 23 35666543 3357889999999999 8999 9999986
Q ss_pred c
Q psy5323 106 L 106 (110)
Q Consensus 106 ~ 106 (110)
+
T Consensus 95 ~ 95 (208)
T 3ngw_A 95 F 95 (208)
T ss_dssp T
T ss_pred C
Confidence 4
No 58
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=52.01 E-value=53 Score=24.31 Aligned_cols=70 Identities=10% Similarity=0.009 Sum_probs=43.8
Q ss_pred hHHHHHHHhcccc-ccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCCC
Q psy5323 27 AGLIRARIAGAEN-AKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCE 105 (110)
Q Consensus 27 ~~~i~~~l~~~~~-~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~~ 105 (110)
..++...+..+.. ....+|++|-+. .+.+..++. .++++. ...|...+...|++....++++++++|..
T Consensus 31 kPLi~~~l~~l~~~~~~~~IvVvt~~---~~~i~~~~~-----~v~~v~--~g~g~~~sv~~aL~~l~~d~vlv~~~D~P 100 (371)
T 1w55_A 31 DPLWLYATKNLSSFYPFKKIVVTSSN---ITYMKKFTK-----NYEFIE--GGDTRAESLKKALELIDSEFVMVSDVARV 100 (371)
T ss_dssp EEHHHHHHHHHHTTSCCSCEEEEESC---HHHHHTTCS-----SSEEEE--CCSSHHHHHHHHHTTCCSSEEEEEETTCT
T ss_pred eEHHHHHHHHHHccCCCCeEEEEcCC---HHHHHHHhC-----CCEEEe--CCCChHHHHHHHHHhcCCCeEEEEeCCcc
Confidence 3466666666554 234677777551 223333222 255653 33567788888998888899999999986
Q ss_pred c
Q psy5323 106 L 106 (110)
Q Consensus 106 ~ 106 (110)
+
T Consensus 101 l 101 (371)
T 1w55_A 101 L 101 (371)
T ss_dssp T
T ss_pred c
Confidence 4
No 59
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=52.01 E-value=53 Score=22.32 Aligned_cols=71 Identities=8% Similarity=0.112 Sum_probs=39.9
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEcc--CCcchHHHHHHHHHhc---CCCEEEEEcC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLK--ERAGLIRARIAGAENA---KGDVLMFLDS 102 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~--~~~G~~~arn~G~~~a---~g~~i~flD~ 102 (110)
.++...+..+......+|+++-+.+ .+..++. +. .++++.++ ...|.+. ...++... ..++++++++
T Consensus 28 pli~~~l~~l~~~~~~~ivvv~~~~----~i~~~~~-~~--~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~~~vlv~~~ 99 (262)
T 1vic_A 28 PMIQHVFEKALQSGASRVIIATDNE----NVADVAK-SF--GAEVCMTSVNHNSGTER-LAEVVEKLAIPDNEIIVNIQG 99 (262)
T ss_dssp EHHHHHHHHHHHTTCSEEEEEESCH----HHHHHHH-HT--TCEEEECCCSSCCHHHH-HHHHHHHTTCCTTCEEEECCT
T ss_pred EHHHHHHHHHHhCCCceEEEECCcH----HHHHHHH-hc--CCEEEECCccccCChHH-HHHHHHHhccCCCCEEEEEeC
Confidence 5666666665544447888886642 2344444 33 36666553 3345542 12223222 5689999999
Q ss_pred CCCc
Q psy5323 103 HCEL 106 (110)
Q Consensus 103 d~~~ 106 (110)
|..+
T Consensus 100 D~P~ 103 (262)
T 1vic_A 100 DEPL 103 (262)
T ss_dssp TCTT
T ss_pred CcCc
Confidence 9753
No 60
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=48.39 E-value=3.9 Score=26.75 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=39.5
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCC--CcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLP--PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCE 105 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~--~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~~ 105 (110)
.++...+..+......+|+++-..+. +.+..++.+.++ .++.++..+ ..|.+.+...|++.. .++++++++|..
T Consensus 28 pli~~~l~~l~~~~~~~v~vv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~-~~g~~~si~~al~~~-~~~vlv~~~D~P 103 (196)
T 3rsb_A 28 CLIDYVVSPLLKSKVNNIFIATSPNT--PKTKEYINSAYKDYKNIVVIDTS-GKGYIEDLNECIGYF-SEPFLVVSSDLI 103 (196)
T ss_dssp EHHHHHHHHHHSSSCCCEEEECCTTC--HHHHHHHHHHTTTTTEEEE---------CCCCCTTTTTC-SSCEEEEETTEE
T ss_pred EHHHHHHHHHHHCCCCEEEEEeCCCh--HHHHHHHHhhccCCCCEEEEECC-CCCcHHHHHHHHHhC-CCCEEEEeCCcc
Confidence 56666666665444467777755421 222333331121 146666543 457766777777777 788999999974
No 61
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=47.20 E-value=72 Score=22.43 Aligned_cols=78 Identities=12% Similarity=-0.016 Sum_probs=49.2
Q ss_pred chHHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhcc-CCC-cEEEEEccCCcchHHHHHHHHHhcC-CCEEEEEcC
Q psy5323 26 RAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTR-LPP-KVRLIRLKERAGLIRARIAGAENAK-GDVLMFLDS 102 (110)
Q Consensus 26 ~~~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~-~~~-~~~~i~~~~~~G~~~arn~G~~~a~-g~~i~flD~ 102 (110)
...++...+..+... ..+|+|+-+.. ....+.+++. . ... ++.++..+...|.+.|.-.+..... .++++++.+
T Consensus 36 g~pli~~~l~~l~~~-~~~i~vv~~~~-~~~~i~~~~~-~~~~~~~~~~i~~~~~~gt~~al~~a~~~l~~~~~~lv~~~ 112 (308)
T 2qh5_A 36 HKSLFELSFKRNASL-VDETLIVCNEK-HYFLALEEIK-NEIKNKSVGFLLESLSKNTANAIALSALMSDKEDLLIVTPS 112 (308)
T ss_dssp TBCHHHHHHHHHHTT-CSEEEEEEEGG-GHHHHHHHTT-TTCSSCEEEEEEESSCCCHHHHHHHHHHTSCTTSEEEEEES
T ss_pred CCCHHHHHHHHHHcc-CCCEEEEEChh-HHHHHHHHHH-HhhCCCccEEEeCCCCCChHHHHHHHHHHhCCCCeEEEEcC
Confidence 345666667666555 56777665431 1123444444 3 321 4667777777899999888887765 457888888
Q ss_pred CCCc
Q psy5323 103 HCEL 106 (110)
Q Consensus 103 d~~~ 106 (110)
|..+
T Consensus 113 D~~~ 116 (308)
T 2qh5_A 113 DHLI 116 (308)
T ss_dssp SCBC
T ss_pred Cccc
Confidence 8765
No 62
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=42.77 E-value=58 Score=23.07 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=28.6
Q ss_pred cEEEEEccCCcchHHHHHHHHHhcCCC--EEEEEcCCCCc
Q psy5323 69 KVRLIRLKERAGLIRARIAGAENAKGD--VLMFLDSHCEL 106 (110)
Q Consensus 69 ~~~~i~~~~~~G~~~arn~G~~~a~g~--~i~flD~d~~~ 106 (110)
.+.++..+...|.+.|...+......+ +++++.+|..+
T Consensus 106 ~i~~~~~~~~~Gt~~al~~a~~~l~~~~d~~lv~~~D~~~ 145 (323)
T 2pa4_A 106 KAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLV 145 (323)
T ss_dssp EEEEEECSSCCCHHHHHHTTGGGSCSSCCEEEEECTTEEE
T ss_pred ceEEEeCCccCCcHHHHHHHHHHhcCCCCeEEEEeCCccc
Confidence 466677777789999998888776543 48888898765
No 63
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=42.70 E-value=45 Score=23.55 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=45.2
Q ss_pred hHHHHHHHhccccccCCEEEEEeCC-C--CchHHHHHHHhccCCCcEEEEEcc---------------CCcchHHHHHHH
Q psy5323 27 AGLIRARIAGAENAKGDVLMFLDSH-Y--ELQGKLDYYIQTRLPPKVRLIRLK---------------ERAGLIRARIAG 88 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~~~EiivVDD~-d--~t~~~l~~~~~~~~~~~~~~i~~~---------------~~~G~~~arn~G 88 (110)
..++...+..+......+|++|-.. . ...+.+..... .. .++.++..+ ...|.+.|...+
T Consensus 33 ~pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~-~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a 110 (303)
T 3pnn_A 33 DTIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKYE-GR-IPVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMG 110 (303)
T ss_dssp CCHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHHHT-TT-SCEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTT
T ss_pred eeHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHHhc-cC-CcEEEEecccccccccccccccccccCCcHHHHHHH
Confidence 3567766666554445677777554 1 12223332222 11 247777665 457999998888
Q ss_pred HHhcCCCEEEEEcCCCCc
Q psy5323 89 AENAKGDVLMFLDSHCEL 106 (110)
Q Consensus 89 ~~~a~g~~i~flD~d~~~ 106 (110)
.....++++ ++.+|..+
T Consensus 111 ~~~i~~~~l-V~~gD~l~ 127 (303)
T 3pnn_A 111 RDAIREPFA-VINADDFY 127 (303)
T ss_dssp TTTCCSCEE-EEESSCBC
T ss_pred HHhcCCCEE-EEECCeec
Confidence 887766655 45677754
No 64
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=42.56 E-value=85 Score=21.98 Aligned_cols=78 Identities=9% Similarity=0.066 Sum_probs=43.8
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhc--cCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQT--RLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCE 105 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~--~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~~ 105 (110)
.++...++.+......+|++|--+.+ ...+..++.. +....+.+++.+...|.+.|...|......+-++++-+|..
T Consensus 34 pli~~~l~~l~~~gi~~I~vv~~~~~-~~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~~~~~~lv~gD~~ 112 (293)
T 1fxo_A 34 PMIYYPLSTLMLAGIREILIISTPQD-TPRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNL 112 (293)
T ss_dssp ETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTCEEEEEECSSCCCGGGHHHHTHHHHTTSEEEEEETTEE
T ss_pred eHHHHHHHHHHHCCCCEEEEEecccc-HHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHHhCCCCEEEEECChh
Confidence 44554455444333468877653311 1223344431 12223566777777799999888888776565555558865
Q ss_pred c
Q psy5323 106 L 106 (110)
Q Consensus 106 ~ 106 (110)
+
T Consensus 113 ~ 113 (293)
T 1fxo_A 113 Y 113 (293)
T ss_dssp E
T ss_pred c
Confidence 4
No 65
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=41.32 E-value=72 Score=20.89 Aligned_cols=75 Identities=9% Similarity=-0.062 Sum_probs=41.2
Q ss_pred HHHHHHHhcccccc-CCEEEEEeCCCCchHHHHHHHhc-c--CCCcEEEEEccCCcchHHHHHHHHHhc----C---CCE
Q psy5323 28 GLIRARIAGAENAK-GDVLMFLDSHYELQGKLDYYIQT-R--LPPKVRLIRLKERAGLIRARIAGAENA----K---GDV 96 (110)
Q Consensus 28 ~~i~~~l~~~~~~~-~~EiivVDD~d~t~~~l~~~~~~-~--~~~~~~~i~~~~~~G~~~arn~G~~~a----~---g~~ 96 (110)
.++...+..+.... ..+|+++-+... .+.+..++.. . ....+... +...|...+...|+... . .++
T Consensus 32 pli~~~l~~l~~~~~~~~i~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 108 (236)
T 2vsh_A 32 PILIHTIEKFVLEPSIEKIVVGVHGDW-VSHAEDLVDKYLPLYKERIIIT--KGGADRNTSIKNIIEAIDAYRPLTPEDI 108 (236)
T ss_dssp EHHHHHHHHHHTCTTCCCEEEEECGGG-HHHHHHHHHHHCGGGGGGEEEE--ECCSSHHHHHHHHHHHHHHHSCCCTTCE
T ss_pred cHHHHHHHHHHcCCCCCeEEEEeCHHH-HHHHHHHHHhccccccCceEEE--CCCCchHHHHHHHHHHHHhhccCCCCCE
Confidence 56777776665543 467777765521 0122322220 1 11012332 22346777777777766 3 489
Q ss_pred EEEEcCCCC
Q psy5323 97 LMFLDSHCE 105 (110)
Q Consensus 97 i~flD~d~~ 105 (110)
++++++|..
T Consensus 109 vlv~~~D~P 117 (236)
T 2vsh_A 109 VVTHDSVRP 117 (236)
T ss_dssp EEEEETTCT
T ss_pred EEEecCCcc
Confidence 999999984
No 66
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=41.10 E-value=72 Score=20.72 Aligned_cols=73 Identities=10% Similarity=0.073 Sum_probs=44.4
Q ss_pred HHHHHHHhcccccc-CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhc-CCCEEEEEcCCCC
Q psy5323 28 GLIRARIAGAENAK-GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENA-KGDVLMFLDSHCE 105 (110)
Q Consensus 28 ~~i~~~l~~~~~~~-~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a-~g~~i~flD~d~~ 105 (110)
.++...+..+.... ..+|+++-+.+. ...+..++. . . .++++... .|.+.+...|++.. ..++++++++|..
T Consensus 31 pli~~~l~~l~~~~~~~~i~vv~~~~~-~~~~~~~~~-~-~-~v~~~~~~--~~~~~~i~~al~~~~~~~~vlv~~~D~P 104 (223)
T 2xwl_A 31 PLLEHALSGLRASGVIDRIVIAVPPAL-TDESKLVFG-G-E-DSVIVSGG--VDRTESVALALEAAGDAEFVLVHDAARA 104 (223)
T ss_dssp EHHHHHHHHHHHHSCCSEEEEEECGGG-HHHHHHHTC-B-T-TEEEEECC--SSHHHHHHHHHTTCTTCSEEEECCTTCT
T ss_pred EHHHHHHHHHhcCCCCCeEEEEEcccH-HHHHHHHhc-c-C-CeEEEcCC--CCHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 55666666554433 467777765521 122333332 1 1 47666532 45677788888887 6789999999975
Q ss_pred c
Q psy5323 106 L 106 (110)
Q Consensus 106 ~ 106 (110)
+
T Consensus 105 ~ 105 (223)
T 2xwl_A 105 L 105 (223)
T ss_dssp T
T ss_pred c
Confidence 3
No 67
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=39.13 E-value=81 Score=20.73 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=26.7
Q ss_pred CeEEEEecC--------CchHHHHHHHhccccccCCEEEEEeCC
Q psy5323 16 PKVRLIRLK--------ERAGLIRARIAGAENAKGDVLMFLDSH 51 (110)
Q Consensus 16 ~~v~ii~~~--------~~~~~i~~~l~~~~~~~~~EiivVDD~ 51 (110)
..+++++.. ...|...++..++....+.=|+++||.
T Consensus 55 ~~i~~i~~~~~~~~~~~~n~G~~~a~N~gi~~a~g~~i~~lD~D 98 (255)
T 1qg8_A 55 NRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDD 98 (255)
T ss_dssp TTEEEEECCCCSHHHHHSSCHHHHHHHHHHHHCCCSEEEEEETT
T ss_pred CCEEEEecccccccccccccCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 346667666 567887777777777777778889888
No 68
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=38.85 E-value=34 Score=23.32 Aligned_cols=43 Identities=19% Similarity=0.060 Sum_probs=28.8
Q ss_pred cCCEEEEEeCC-----CCchHHHHHHHhccCCCcEEEEEccCCcchHHHH
Q psy5323 41 KGDVLMFLDSH-----YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRAR 85 (110)
Q Consensus 41 ~~~EiivVDD~-----d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~ar 85 (110)
++..++|||++ .++...++.... .+.++-++....+.|.+.|.
T Consensus 120 tp~s~lIVD~AekLS~kE~~~Lld~A~~--~naqvvll~~~~RqG~GnAl 167 (189)
T 2l8b_A 120 TPGSTVIVDQGEKLSLKETLTLLDGAAR--HNVQVLITDSGQRTGTGSAL 167 (189)
T ss_dssp CCCCEEEEEESSSHHHHHHHHHHHHHHH--TTCCEEEEESSTTTCSHHHH
T ss_pred CCCCEEEEechhhcCHHHHHHHHHHHHh--cCCEEEEeCCcccccCCCHH
Confidence 35679999999 334455555444 33478888888888885543
No 69
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=34.82 E-value=93 Score=20.15 Aligned_cols=43 Identities=35% Similarity=0.530 Sum_probs=26.7
Q ss_pred HHHHHhhhCCCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC
Q psy5323 6 LDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 51 (110)
Q Consensus 6 l~~~~~~~lp~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~ 51 (110)
+..|.++ .| .+++++ ....|.-.++..++....+.=|+++|+.
T Consensus 52 ~~~~~~~-~~-~i~~i~-~~n~G~~~a~N~g~~~a~g~~i~~lD~D 94 (240)
T 3bcv_A 52 CDDYAAQ-YP-NIKVIH-KKNAGLGMACNSGLDVATGEYVAFCDSD 94 (240)
T ss_dssp HHHHHHH-CS-SEEEEE-CCCCCHHHHHHHHHHHCCSSEEEECCTT
T ss_pred HHHHHhh-CC-CEEEEE-CCCCChHHHHHHHHHHcCCCEEEEECCC
Confidence 4444442 34 355555 3456777777777766667778888877
No 70
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=32.36 E-value=1.3e+02 Score=21.10 Aligned_cols=77 Identities=12% Similarity=0.077 Sum_probs=42.5
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhc--cCCCcEEEEEccCCcchHHHHHHHHHhcCC-CEEEEEcCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQT--RLPPKVRLIRLKERAGLIRARIAGAENAKG-DVLMFLDSHC 104 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~--~~~~~~~~i~~~~~~G~~~arn~G~~~a~g-~~i~flD~d~ 104 (110)
.++...++.+......+|+||--..+ ...+..++.. +...++.++..+...|.+.|...|...... ++++++ +|.
T Consensus 35 pli~~~l~~l~~~gi~~Iivv~~~~~-~~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~~~~~~lv~-gD~ 112 (295)
T 1lvw_A 35 PMIYYPLSVLMLAGIRDILIISTPRD-LPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGDSKVALVL-GDN 112 (295)
T ss_dssp ETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTSEEEEEECSSCCCGGGHHHHTHHHHTTSCEEEEE-TTC
T ss_pred eHHHHHHHHHHHCCCCeEEEEeccch-HHHHHHHhhhccccCceEEEeeCCCCCChHHHHHHHHHHhCCCcEEEEE-CCc
Confidence 44554455444333467887653211 1223344431 122235666666667999888888877654 455555 886
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 113 ~~ 114 (295)
T 1lvw_A 113 VF 114 (295)
T ss_dssp CE
T ss_pred cc
Confidence 54
No 71
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=29.29 E-value=1.3e+02 Score=21.50 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=43.9
Q ss_pred hHHHHHHHhccccc-cCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC-CCEEEEEcCCC
Q psy5323 27 AGLIRARIAGAENA-KGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK-GDVLMFLDSHC 104 (110)
Q Consensus 27 ~~~i~~~l~~~~~~-~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~-g~~i~flD~d~ 104 (110)
..++...+..+... ...+++++-+.. ....+.+++. ..+ ...++..+...|.+.|.-.++.... .++++++.+|.
T Consensus 34 ~pli~~~l~~l~~~~~~~~iivvt~~~-~~~~i~~~l~-~~~-~~~ii~e~~~~gta~ai~~a~~~~~~~~~~lvl~~D~ 110 (336)
T 2x65_A 34 KSLMRWTFERVLEEMDPKDVIVVTHKD-YVERTKKELP-ELP-DENIIAEPMKKNTAPACFIGTKLADDDEPVLVLPADH 110 (336)
T ss_dssp BCHHHHHHHHHHTTCCGGGEEEEEEGG-GHHHHHHHCT-TSC-GGGEEEESSCCCHHHHHHHHHTTSCTTCEEEEEETTC
T ss_pred CcHHHHHHHHHhccCCCCcEEEEcChH-HHHHHHHHhh-ccc-cceEEeCCCCCCcHHHHHHHHHhhCCCCEEEEEcCCc
Confidence 45676666665543 234566654331 1223344443 222 2345555666788887777766543 46888888887
Q ss_pred CcC
Q psy5323 105 ELG 107 (110)
Q Consensus 105 ~~~ 107 (110)
.+.
T Consensus 111 ~~~ 113 (336)
T 2x65_A 111 RIP 113 (336)
T ss_dssp BCC
T ss_pred eec
Confidence 653
No 72
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=28.96 E-value=1.5e+02 Score=20.77 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=42.2
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhc--cCCCcEEEEEccCCcchHHHHHHHHHhcCC-CEEEEEcCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQT--RLPPKVRLIRLKERAGLIRARIAGAENAKG-DVLMFLDSHC 104 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~--~~~~~~~~i~~~~~~G~~~arn~G~~~a~g-~~i~flD~d~ 104 (110)
.++...++.+......+|+||--..+ ...+..++.. +...++.++..+...|.+.|...|...... ++++++ +|.
T Consensus 35 pli~~~l~~l~~~gi~~I~vv~~~~~-~~~i~~~l~~g~~~g~~i~~~~~~~~~G~~~al~~a~~~i~~~~~~lv~-gD~ 112 (296)
T 1mc3_A 35 PMIYYPLSVLMLAGIREILIITTPED-KGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPSCLVL-GDN 112 (296)
T ss_dssp ETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTCEEEEEECSSCCCSTHHHHHTHHHHTTSCEEEEE-TTE
T ss_pred eHHHHHHHHHHhCCCCcEEEEechhH-HHHHHHHHhcccccCceEEEeccCCCCCHHHHHHHHHHHhCCCCEEEEE-CCc
Confidence 44444455444333468887753211 1223444431 122235666667777999998888887654 455544 775
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 113 ~~ 114 (296)
T 1mc3_A 113 IF 114 (296)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 73
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=28.75 E-value=1.3e+02 Score=20.29 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=39.8
Q ss_pred HHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHhccCCCcEEEEEccC--CcchHHHHHHHHHhcCCCEEEEEcCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQTRLPPKVRLIRLKE--RAGLIRARIAGAENAKGDVLMFLDSHC 104 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~~~~~~~~~~i~~~~--~~G~~~arn~G~~~a~g~~i~flD~d~ 104 (110)
.++...+..+......+|+||-.. .+. ++.+.. .. .++++..+. ..|.+.|...+..... + ++++.+|.
T Consensus 57 pli~~~l~~l~~~g~~~i~vv~~~~~~~---i~~~~~-~~--~~~iv~~~~~~~~g~~~al~~a~~~~~-~-~lv~~~D~ 128 (254)
T 1jyk_A 57 PLIEYQIEFLKEKGINDIIIIVGYLKEQ---FDYLKE-KY--GVRLVFNDKYADYNNFYSLYLVKEELA-N-SYVIDADN 128 (254)
T ss_dssp EHHHHHHHHHHHTTCCCEEEEECTTGGG---GTHHHH-HH--CCEEEECTTTTTSCTHHHHHTTGGGCT-T-EEEEETTE
T ss_pred EHHHHHHHHHHHCCCCeEEEEeCCcHHH---HHHHHH-hC--CcEEEECCCccCCCcHHHHHHHHHHCC-C-EEEEeCCc
Confidence 566666666554434567766554 221 222222 22 366777554 4577777776666553 4 45678886
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 129 ~~ 130 (254)
T 1jyk_A 129 YL 130 (254)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 74
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=28.23 E-value=1.4e+02 Score=20.18 Aligned_cols=73 Identities=8% Similarity=0.051 Sum_probs=43.8
Q ss_pred hHHHHHHHhcccccc-CCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcC----CCEEEEEc
Q psy5323 27 AGLIRARIAGAENAK-GDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAK----GDVLMFLD 101 (110)
Q Consensus 27 ~~~i~~~l~~~~~~~-~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~----g~~i~flD 101 (110)
..++...+..+.... ..+|++|-+.+.. +.+..++. . .++++... .+-..+.-.|++... .++++++|
T Consensus 35 kpll~~~l~~~~~~~~~~~ivVv~~~~~~-~~~~~~~~-~---~v~~v~gg--~~r~~sv~~gl~~~~~~~~~d~Vlv~~ 107 (231)
T 3q80_A 35 QTLIERAVDGLLDSGVVDTVVVAVPADRT-DEARQILG-H---RAMIVAGG--SNRTDTVNLALTVLSGTAEPEFVLVHD 107 (231)
T ss_dssp EEHHHHHHHHHHHTSCCCEEEEEECGGGH-HHHHHHHG-G---GCEEEECC--SSHHHHHHHHHGGGC---CCSEEEECC
T ss_pred eEHHHHHHHHHHhCCCCCeEEEECChHHH-HHHHHHhc-C---CeEEEcCC--CchHHHHHHHHHHhhhcCCCCEEEEEc
Confidence 345666666554433 4688887665221 23344443 2 36666422 234567778888776 48999999
Q ss_pred CCCCc
Q psy5323 102 SHCEL 106 (110)
Q Consensus 102 ~d~~~ 106 (110)
+|..+
T Consensus 108 ~d~Pl 112 (231)
T 3q80_A 108 AARAL 112 (231)
T ss_dssp TTCTT
T ss_pred CCcCC
Confidence 99764
No 75
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=27.69 E-value=1.1e+02 Score=20.30 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=40.3
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCE 105 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d~~ 105 (110)
.++...+..+..... +|+++-. .+ .+ . .+- .+++ +...|.+.+...|+.... +.++++++|..
T Consensus 33 pll~~~l~~l~~~~~-~ivvv~~-~~---~i----~-~~~-~~~~---~~~~g~~~~i~~a~~~~~-~~~lv~~~D~P 95 (232)
T 2dpw_A 33 PMVEWVLEALYAAGL-SPVYVGE-NP---GL----V-PAP-ALTL---PDRGGLLENLEQALEHVE-GRVLVATGDIP 95 (232)
T ss_dssp ETHHHHHHHHHHTTC-EEEEESC-CS---SC----S-SCC-SEEE---CCCSSHHHHHHHHHHTCC-SEEEEEETTCT
T ss_pred EHHHHHHHHHHhcCC-EEEEEeC-hH---HH----h-hhc-CeEe---cCCCCHHHHHHHHHHHcC-CCEEEEeCCcc
Confidence 455555655544434 8888722 21 11 1 111 3555 455799999999998887 89999999985
No 76
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=27.45 E-value=73 Score=22.97 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=19.6
Q ss_pred hhhCCCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC
Q psy5323 11 QTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 51 (110)
Q Consensus 11 ~~~lp~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~ 51 (110)
++++|...+++..+.+.+.... +. ....++|+.|||
T Consensus 105 a~~~~~~~v~v~~~R~~~~~~~-~~----~~~~dviIlDDG 140 (315)
T 4ehx_A 105 AKLLPHVSVVASEDRYKGGLLA-LE----KLSPEVFILDDG 140 (315)
T ss_dssp HHHCTTSEEEEESSHHHHHHHH-HH----HHCCSEEEEETC
T ss_pred HHhCCCceEEEecchHHHHHHH-hh----ccCCcEEEecCc
Confidence 3456665566655554443322 21 124578888888
No 77
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster}
Probab=24.69 E-value=67 Score=23.31 Aligned_cols=28 Identities=14% Similarity=-0.105 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhcC--CCEEEEEcCCCCcCC
Q psy5323 81 LIRARIAGAENAK--GDVLMFLDSHCELGT 108 (110)
Q Consensus 81 ~~~arn~G~~~a~--g~~i~flD~d~~~~~ 108 (110)
-+...|.|+..|. -+|++|-|-|..+..
T Consensus 99 Ra~LlNvGf~ea~~~~d~~ifHDVDLlP~d 128 (287)
T 3lw6_A 99 RASLINVGFQFASDVYDYIAMHDVDLLPLN 128 (287)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEECTTEEECC
T ss_pred hhheecccHHHHhccCCEEEEecccccccC
Confidence 4567899999886 489999999976544
No 78
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=24.58 E-value=97 Score=18.07 Aligned_cols=18 Identities=11% Similarity=0.451 Sum_probs=7.6
Q ss_pred cEEEEE--ccCCcchHHHHH
Q psy5323 69 KVRLIR--LKERAGLIRARI 86 (110)
Q Consensus 69 ~~~~i~--~~~~~G~~~arn 86 (110)
.+-++. .+.-.|+...+.
T Consensus 54 dlvllD~~mp~~~G~~~~~~ 73 (133)
T 2r25_B 54 NMIFMDVQMPKVDGLLSTKM 73 (133)
T ss_dssp SEEEECSCCSSSCHHHHHHH
T ss_pred CEEEEeCCCCCCChHHHHHH
Confidence 454443 233345544443
No 79
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=21.79 E-value=65 Score=23.26 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=41.1
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccC-CcchHHHHHHHHHhcCCCEEEEEcCCCCc
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKE-RAGLIRARIAGAENAKGDVLMFLDSHCEL 106 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~-~~G~~~arn~G~~~a~g~~i~flD~d~~~ 106 (110)
.++...+..+......+|+++-+.. +.+++....+ +++++..+. ..|.+.|...+.. .+.++++.+|..+
T Consensus 32 pli~~~l~~l~~~~~~~i~vv~~~~-----i~~~~~~~~~-~i~~~~~~~~~~g~~~~l~~~~~---~~~~lv~~~D~~~ 102 (401)
T 2ggo_A 32 PLIEYQIEYLRKCGIRDITVIVSSK-----NKEYFEKKLK-EISIVTQKDDIKGTGAAILSAKF---NDEALIIYGDLFF 102 (401)
T ss_dssp EHHHHHHHHHHHTTCCEEEEEECGG-----GHHHHHHHCT-TCEEEECCTTCCBSTTTGGGCCC---SSEEEEEETTEEE
T ss_pred eHHHHHHHHHHHCCCCEEEEEeCHH-----HHHHhhccCC-cEEEEeCCCCCCChHHHHHHhcc---CCCEEEEeCcccc
Confidence 5677667666544456777775434 3333331222 477777665 5676654433332 5778888888754
Q ss_pred C
Q psy5323 107 G 107 (110)
Q Consensus 107 ~ 107 (110)
.
T Consensus 103 ~ 103 (401)
T 2ggo_A 103 S 103 (401)
T ss_dssp S
T ss_pred c
Confidence 3
No 80
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=21.28 E-value=1.3e+02 Score=17.39 Aligned_cols=6 Identities=17% Similarity=0.168 Sum_probs=3.3
Q ss_pred cEEEEE
Q psy5323 69 KVRLIR 74 (110)
Q Consensus 69 ~~~~i~ 74 (110)
.+-++.
T Consensus 62 dlvi~D 67 (146)
T 3ilh_A 62 SIICID 67 (146)
T ss_dssp SEEEEE
T ss_pred CEEEEc
Confidence 455554
No 81
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=20.14 E-value=1.4e+02 Score=18.18 Aligned_cols=6 Identities=17% Similarity=0.135 Sum_probs=2.6
Q ss_pred cEEEEE
Q psy5323 69 KVRLIR 74 (110)
Q Consensus 69 ~~~~i~ 74 (110)
.+-++.
T Consensus 73 dlvilD 78 (164)
T 3t8y_A 73 DVITMD 78 (164)
T ss_dssp SEEEEC
T ss_pred CEEEEe
Confidence 344443
No 82
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=20.02 E-value=2.1e+02 Score=19.39 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=27.4
Q ss_pred cEEEEEccCCcchHHHHHHHHHhcCCCEEEEE
Q psy5323 69 KVRLIRLKERAGLIRARIAGAENAKGDVLMFL 100 (110)
Q Consensus 69 ~~~~i~~~~~~G~~~arn~G~~~a~g~~i~fl 100 (110)
.+.++.--.+.|+..|-|.|+..+.|..+.++
T Consensus 41 g~~lV~GGg~~GlM~aa~~gA~~~GG~~iGv~ 72 (216)
T 1ydh_A 41 KIDLVYGGGSVGLMGLISRRVYEGGLHVLGII 72 (216)
T ss_dssp TCEEEECCCSSHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEECCCcccHhHHHHHHHHHcCCcEEEEe
Confidence 47777766666999999999999999998886
Done!