Query psy5323
Match_columns 110
No_of_seqs 162 out of 1165
Neff 7.7
Searched_HMMs 13730
Date Fri Aug 16 23:42:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5323.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5323hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 99.9 1.6E-21 1.1E-25 141.6 11.5 97 13-110 20-124 (328)
2 d1qg8a_ c.68.1.1 (A:) Spore co 99.8 3.6E-19 2.7E-23 124.5 7.6 93 15-110 1-105 (255)
3 d1omza_ c.68.1.15 (A:) Alpha-1 99.7 1.9E-19 1.4E-23 121.9 3.1 94 14-110 2-98 (265)
4 d2bo4a1 c.68.1.18 (A:2-382) Ma 99.0 1.3E-10 9.5E-15 86.8 3.1 93 18-110 2-109 (381)
5 d1v82a_ c.68.1.7 (A:) Beta-1,3 93.2 0.36 2.6E-05 33.0 8.8 90 14-107 1-119 (252)
6 d1fo8a_ c.68.1.10 (A:) N-acety 92.9 0.087 6.4E-06 37.7 5.4 85 19-109 6-115 (343)
7 d1xhba2 c.68.1.17 (A:95-422) P 90.4 0.21 1.5E-05 34.0 5.0 48 3-51 70-117 (328)
8 d3cu0a1 c.68.1.7 (A:75-335) 1, 85.6 3.6 0.00026 27.9 8.8 87 17-107 3-126 (261)
9 d1pzta_ c.68.1.2 (A:) beta 1,4 61.5 19 0.0014 24.0 7.3 68 17-107 51-127 (271)
10 d1dcfa_ c.23.1.2 (A:) Receiver 58.1 8 0.00058 22.6 4.4 10 42-51 31-40 (134)
11 d2r25b1 c.23.1.1 (B:1087-1214) 57.4 4.6 0.00034 23.6 3.2 19 45-63 4-22 (128)
12 d1lvwa_ c.68.1.6 (A:) RmlA (Rf 56.4 9.6 0.0007 25.2 5.0 77 28-105 35-114 (295)
13 d1fxoa_ c.68.1.6 (A:) RmlA (Rf 53.4 7.9 0.00058 26.1 4.2 78 28-106 33-113 (292)
14 d1mc3a_ c.68.1.6 (A:) RffH {Es 47.0 9.9 0.00072 25.7 3.8 75 28-103 33-110 (291)
15 d1k68a_ c.23.1.1 (A:) Response 46.2 5.1 0.00037 23.7 2.0 19 45-63 5-23 (140)
16 d1i3ca_ c.23.1.1 (A:) Response 40.8 8.6 0.00063 22.8 2.5 9 43-51 30-38 (144)
17 d1ydhb_ c.129.1.1 (B:) Hypothe 36.5 43 0.0031 20.5 5.9 41 57-100 25-65 (181)
18 d1sura_ c.26.2.2 (A:) Phosphoa 35.6 45 0.0033 20.6 8.2 62 12-76 41-106 (215)
19 d1a04a2 c.23.1.1 (A:5-142) Nit 34.3 13 0.00096 21.5 2.5 7 45-51 5-11 (138)
20 d1dz3a_ c.23.1.1 (A:) Sporulat 34.2 14 0.001 21.1 2.6 19 45-63 4-22 (123)
21 d1lzia_ c.68.1.9 (A:) Glycosyl 33.6 6.8 0.0005 26.8 1.2 19 91-109 139-157 (283)
22 d1a2oa1 c.23.1.1 (A:1-140) Met 28.8 19 0.0014 20.9 2.6 19 45-63 6-24 (140)
23 d2q4oa1 c.129.1.1 (A:8-190) Hy 27.9 62 0.0045 19.8 5.9 34 69-102 38-71 (183)
24 d1jyka_ c.68.1.13 (A:) CTP:pho 27.6 29 0.0021 21.0 3.5 65 28-98 35-102 (229)
25 d1e5ka_ c.68.1.8 (A:) Molybden 25.5 60 0.0044 18.8 5.2 33 74-106 69-101 (188)
26 d1rcua_ c.129.1.1 (A:) Hypothe 25.1 51 0.0037 19.9 4.3 39 58-100 28-66 (170)
27 d1w25a1 c.23.1.1 (A:2-140) Res 25.0 35 0.0025 19.6 3.3 11 41-51 24-34 (139)
28 d1t35a_ c.129.1.1 (A:) Hypothe 23.2 76 0.0055 19.2 5.7 44 57-103 24-67 (179)
29 d1v2xa_ c.116.1.1 (A:) tRNA (G 23.0 72 0.0053 19.4 4.8 48 4-51 10-57 (191)
30 d1o7qa_ c.68.1.9 (A:) alpha-1, 22.6 14 0.001 25.2 1.2 98 6-109 37-152 (287)
31 d1gz0a1 c.116.1.1 (A:78-243) R 22.5 73 0.0053 18.7 6.7 51 4-54 6-57 (166)
32 d1zh2a1 c.23.1.1 (A:2-120) Tra 21.7 26 0.0019 19.6 2.2 11 41-51 23-33 (119)
33 d1ga8a_ c.68.1.4 (A:) Galactos 21.3 82 0.006 19.9 5.0 81 27-108 12-110 (282)
34 d1j6ua2 c.59.1.1 (A:296-446) U 20.9 55 0.004 18.9 3.7 9 93-101 71-79 (151)
35 d1qdlb_ c.23.16.1 (B:) Anthran 20.8 81 0.0059 18.8 4.7 7 69-75 27-33 (195)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.86 E-value=1.6e-21 Score=141.63 Aligned_cols=97 Identities=30% Similarity=0.619 Sum_probs=82.8
Q ss_pred hCCCeEEEEecCCc-hHHHHHHHhccccccC----CEEEEEeCC--CCc-hHHHHHHHhccCCCcEEEEEccCCcchHHH
Q psy5323 13 RLPPKVRLIRLKER-AGLIRARIAGAENAKG----DVLMFLDSH--YEL-QGKLDYYIQTRLPPKVRLIRLKERAGLIRA 84 (110)
Q Consensus 13 ~lp~~v~ii~~~~~-~~~i~~~l~~~~~~~~----~EiivVDD~--d~t-~~~l~~~~~~~~~~~~~~i~~~~~~G~~~a 84 (110)
.+|...+||+++++ ..++.+++.|+..|+. .|||||||+ |++ ...++.+.+ +.+.+++++++++|.|.++|
T Consensus 20 ~~P~vSIIIp~yNe~~~~l~~~l~Si~~qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~-~~~~~i~vi~~~~n~G~~~a 98 (328)
T d1xhba2 20 NLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVK-KLKVPVHVIRMEQRSGLIRA 98 (328)
T ss_dssp CCCCEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHH-SSSSCEEEEECSSCCCHHHH
T ss_pred CCCCEEEEEeccCCcHHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhhHHHHHHHHHH-hcCCCeEEEEecccccchHH
Confidence 47877777887765 5788999999988873 499999999 444 467788877 55557999999999999999
Q ss_pred HHHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 85 RIAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 85 rn~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
||.|++.|+|+||+|||+|+.++++|
T Consensus 99 ~N~Gi~~a~gd~i~flD~D~~~~p~~ 124 (328)
T d1xhba2 99 RLKGAAVSRGQVITFLDAHCECTAGW 124 (328)
T ss_dssp HHHHHHHCCSSEEEEEESSEEECTTC
T ss_pred HHHHHHhhhcceeeecCcccccChhH
Confidence 99999999999999999999999998
No 2
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=99.77 E-value=3.6e-19 Score=124.48 Aligned_cols=93 Identities=12% Similarity=0.174 Sum_probs=80.8
Q ss_pred CCeEEEEecCCchHHHHHHHhcccccc--CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEcc--------CCcchH
Q psy5323 15 PPKVRLIRLKERAGLIRARIAGAENAK--GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLK--------ERAGLI 82 (110)
Q Consensus 15 p~~v~ii~~~~~~~~i~~~l~~~~~~~--~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~--------~~~G~~ 82 (110)
|...++++.++++.++.+++.|+..|+ ++|||||||+ |.|.++++++.. . + ++++++++ ++.|.+
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~-~-~-~i~~~~~~~~~~~~~~~~~g~~ 77 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLN-D-N-RVRFYQSDISGVKERTEKTRYA 77 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGG-S-T-TEEEEECCCCSHHHHHSSCHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhh-h-c-ccccccccccccccccccchhc
Confidence 555677888888999999999998887 5799999999 668888887754 3 3 69998875 788999
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCCcCCCC
Q psy5323 83 RARIAGAENAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 83 ~arn~G~~~a~g~~i~flD~d~~~~~~W 110 (110)
+|+|.|++.|+|+||+|+|+|+.+.|+|
T Consensus 78 ~a~N~gi~~a~g~~i~~lD~Dd~~~p~~ 105 (255)
T d1qg8a_ 78 ALINQAIEMAEGEYITYATDDNIYMPDR 105 (255)
T ss_dssp HHHHHHHHHCCCSEEEEEETTEEECTTH
T ss_pred ccccccccccccccccccccccccccch
Confidence 9999999999999999999999998876
No 3
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.74 E-value=1.9e-19 Score=121.89 Aligned_cols=94 Identities=10% Similarity=0.075 Sum_probs=75.8
Q ss_pred CCCeEEEEecCCchHHHHHHHhcccccc-CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHH
Q psy5323 14 LPPKVRLIRLKERAGLIRARIAGAENAK-GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAE 90 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~i~~~l~~~~~~~-~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~ 90 (110)
|-...++|++++++..+.+++.|+..|+ ..|+|||||+ |++.+.+..... .. ..+++...+|.|.+.|||.|++
T Consensus 2 ~~~~tvii~tyn~~~~l~~~l~sl~~q~~~~~~iiV~d~~sd~~~~~i~~~~~-~~--~~~~~~~~~~~g~~~a~n~~~~ 78 (265)
T d1omza_ 2 LDSFTLIMQTYNRTDLLLRLLNHYQAVPSLHKVIVVWNNVGEKGPEELWNSLG-PH--PIPVIFKPQTANKMRNRLQVFP 78 (265)
T ss_dssp TTCEEEEEEESSCHHHHHHHHHHHTTSTTEEEEEEEECCTTCCCTHHHHHHTC-CC--SSCEEEEECSSCCGGGGGSCCT
T ss_pred CCcEEEEEEcCCCHHHHHHHHHHHHcCCCcCeEEEEECCCCCccHHHHHHHhc-cc--ceEEEEecCCCCchhhhhhhHH
Confidence 3457889999999999999999998886 3566666666 777777766544 33 3455566788999999999999
Q ss_pred hcCCCEEEEEcCCCCcCCCC
Q psy5323 91 NAKGDVLMFLDSHCELGTNW 110 (110)
Q Consensus 91 ~a~g~~i~flD~d~~~~~~W 110 (110)
.|+||||+|+|+|+.+.++|
T Consensus 79 ~a~ge~i~~lD~D~~~~~~~ 98 (265)
T d1omza_ 79 EVETNAVLMVDDDTLISAQD 98 (265)
T ss_dssp TCCSSEEEEECTTEEECHHH
T ss_pred hCCcCEEEEeCcccCCCHHH
Confidence 99999999999999987765
No 4
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]}
Probab=98.95 E-value=1.3e-10 Score=86.80 Aligned_cols=93 Identities=12% Similarity=0.148 Sum_probs=57.5
Q ss_pred EEEEecCCc-hHHHHHHHhcccccc-CCEEEEEeCC-CCchHHHHHHHhc---cCCCcEEEE--------EccCCcchHH
Q psy5323 18 VRLIRLKER-AGLIRARIAGAENAK-GDVLMFLDSH-YELQGKLDYYIQT---RLPPKVRLI--------RLKERAGLIR 83 (110)
Q Consensus 18 v~ii~~~~~-~~~i~~~l~~~~~~~-~~EiivVDD~-d~t~~~l~~~~~~---~~~~~~~~i--------~~~~~~G~~~ 83 (110)
++||+..|. ..++...+....... ..||+++||+ |++...+.+...+ ..+..+... +..++.|+..
T Consensus 2 lVVIP~~NEe~~il~~~v~~~a~~P~~~eIvVvDdsSdDtt~~i~~~~~~~~~~~~~~v~~~~~~~l~~~~~GKG~g~~~ 81 (381)
T d2bo4a1 2 LVVFPFKHEHPEVLLHNVRVAAAHPRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNT 81 (381)
T ss_dssp EEEEECCSSCHHHHHHHHHHHHHSTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHH
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhCCCeeEEEEEcCCCCCcHHHHHHHhhhhhccccccchhhhhcccccccCCCcHHHHH
Confidence 466775544 466666655443332 4688888888 7777666554331 111122222 1123345667
Q ss_pred HHHHHHHhcCCCEEEEEcCCCC-cCCCC
Q psy5323 84 ARIAGAENAKGDVLMFLDSHCE-LGTNW 110 (110)
Q Consensus 84 arn~G~~~a~g~~i~flD~d~~-~~~~W 110 (110)
|+..|++.++|++|+|+|||.. ..+.|
T Consensus 82 A~~~g~~~a~gd~lvflDADl~~~~pe~ 109 (381)
T d2bo4a1 82 ALRYFLEETQWERIHFYDADITSFGPDW 109 (381)
T ss_dssp HHHHHHHHCCCSEEEECCTTCSSCCHHH
T ss_pred HHHHHHHhCCCCEEEEEcCCcCcCCHHH
Confidence 8999999999999999999984 44543
No 5
>d1v82a_ c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.24 E-value=0.36 Score=33.01 Aligned_cols=90 Identities=10% Similarity=0.036 Sum_probs=51.2
Q ss_pred CCCeEEEEecCCchHH---HHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEc--cCC----------
Q psy5323 14 LPPKVRLIRLKERAGL---IRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRL--KER---------- 78 (110)
Q Consensus 14 lp~~v~ii~~~~~~~~---i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~--~~~---------- 78 (110)
||.++.|.+++.|..- +.+-...+..-.+.-.|||+|+.........+++ +.. +.+.+. +..
T Consensus 1 lp~I~vVTPTy~R~~Q~~~LtRLa~TL~lVp~l~WIVVEda~~~t~~va~lL~-~sg--l~y~HL~~~~p~~~~~~~~~~ 77 (252)
T d1v82a_ 1 LPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVVEDAPRRTPLTARLLR-DTG--LNYTHLHVETPRNYKLRGDAR 77 (252)
T ss_dssp CCEEEEEEEECCSTTHHHHHHHHHHHHTTCSSEEEEEEESSSSCCHHHHHHHH-HHC--CEEEEEECCCCHHHHCCC---
T ss_pred CCCEEEECCCCCchhhHHHHHHHHhHHhcCCCceEEEEeCCCCCCHHHHHHHH-HcC--CceEeeccCCCcccccccccc
Confidence 5777888888777432 2222222333346778999998333333444555 432 434332 110
Q ss_pred -----cchHHHHHHHHHhcC---------CCEEEEEcCCCCcC
Q psy5323 79 -----AGLIRARIAGAENAK---------GDVLMFLDSHCELG 107 (110)
Q Consensus 79 -----~G~~~arn~G~~~a~---------g~~i~flD~d~~~~ 107 (110)
.| ..-||.|++..+ --++.|.|.|-.++
T Consensus 78 ~~~~~rg-~~qRn~aL~~iR~~~~~~~~~~GVVyFADDdNtYs 119 (252)
T d1v82a_ 78 DPRIPRG-TMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYS 119 (252)
T ss_dssp --CCCTT-HHHHHHHHHHHHHHSCTTCCCCEEEEECCTTSEEC
T ss_pred ccccccc-HHHHHHHHHHHHHhcccccCcceEEEEecCCCccc
Confidence 12 257999999662 24899999886553
No 6
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=92.89 E-value=0.087 Score=37.72 Aligned_cols=85 Identities=13% Similarity=0.033 Sum_probs=50.7
Q ss_pred EEEecCCchHHHHHHHhccccc-c---CCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccC---------------
Q psy5323 19 RLIRLKERAGLIRARIAGAENA-K---GDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKE--------------- 77 (110)
Q Consensus 19 ~ii~~~~~~~~i~~~l~~~~~~-~---~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~--------------- 77 (110)
+++..++|+ .++++|.++... . ...|+|..|| +++.+.+..+.. .+..+.++.
T Consensus 6 Vlv~a~NRP-~l~r~LesLlk~~p~~~~~~I~Vs~DG~~~~~~~~v~~~~~-----~v~~I~~~~~~~~~~~~~~~k~~~ 79 (343)
T d1fo8a_ 6 ILVIACDRS-TVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGS-----AVTHIRQPDLSNIAVQPDHRKFQG 79 (343)
T ss_dssp EEEEESSCT-THHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGG-----GSEEEECSCCCCCCCCTTCGGGHH
T ss_pred EEEEEcCHH-HHHHHHHHHHhcCccccCccEEEEecCCchhHHHHHHHHHH-----HHHHhcCCccccceecchhhcccc
Confidence 556666777 478888887533 2 3568989999 334455544332 344443321
Q ss_pred CcchHHH----HHHHHHhcCCCEEEEEcCCCCcCCC
Q psy5323 78 RAGLIRA----RIAGAENAKGDVLMFLDSHCELGTN 109 (110)
Q Consensus 78 ~~G~~~a----rn~G~~~a~g~~i~flD~d~~~~~~ 109 (110)
+.|++.. .+.-+..-.-+.+++|..|+.++++
T Consensus 80 n~giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spd 115 (343)
T d1fo8a_ 80 YYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPD 115 (343)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTT
T ss_pred hhHHHHHHHHHHHHHhcccCCceEEEEecCceeeHH
Confidence 2333333 3333333345899999999999876
No 7
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=90.38 E-value=0.21 Score=33.95 Aligned_cols=48 Identities=44% Similarity=0.830 Sum_probs=39.8
Q ss_pred hhHHHHHHhhhCCCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC
Q psy5323 3 QGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 51 (110)
Q Consensus 3 ~~~l~~~~~~~lp~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~ 51 (110)
++.++.|+++ .+..++++++....|+..++..++...++.=|+++|+.
T Consensus 70 ~~~l~~~~~~-~~~~i~vi~~~~n~G~~~a~N~Gi~~a~gd~i~flD~D 117 (328)
T d1xhba2 70 KRPLESYVKK-LKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAH 117 (328)
T ss_dssp THHHHHHHHS-SSSCEEEEECSSCCCHHHHHHHHHHHCCSSEEEEEESS
T ss_pred HHHHHHHHHh-cCCCeEEEEecccccchHHHHHHHHhhhcceeeecCcc
Confidence 3457778774 56679999998889999999999888888889999988
No 8
>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo sapiens) [TaxId: 9606]}
Probab=85.61 E-value=3.6 Score=27.93 Aligned_cols=87 Identities=9% Similarity=0.013 Sum_probs=48.6
Q ss_pred eEEEEecCCchH---HHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEc--cC--------------
Q psy5323 17 KVRLIRLKERAG---LIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRL--KE-------------- 77 (110)
Q Consensus 17 ~v~ii~~~~~~~---~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~--~~-------------- 77 (110)
++.|.+++.|.. .+.+-...+..-.+.-.|||+|..........+++ +.. +.+.+. +.
T Consensus 3 IyvVTPTY~R~~Q~a~LtRLa~TL~lVp~l~WIVVEDa~~~t~~v~~lL~-~sg--l~y~HL~~~tp~~~~~~~~~~~~~ 79 (261)
T d3cu0a1 3 IYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSGLLA-ASG--LLFTHLVVLTPKAQRLREGEPGWV 79 (261)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHHHTTSSSEEEEEEESSSSCCHHHHHHHH-HHC--SEEEEEECCCC-----------CC
T ss_pred EEEECCCCCCchhHHHHHHHHHHHhcCCCeeEEEEECCCCCCHHHHHHHH-HcC--CceEEeecCCchhhcccccCcccc
Confidence 345566766632 22222222333346778999999443344455555 432 433332 11
Q ss_pred -CcchHHHHHHHHHhcCC-----------------CEEEEEcCCCCcC
Q psy5323 78 -RAGLIRARIAGAENAKG-----------------DVLMFLDSHCELG 107 (110)
Q Consensus 78 -~~G~~~arn~G~~~a~g-----------------~~i~flD~d~~~~ 107 (110)
..| ..-||.|++..+- -++.|.|.|-.++
T Consensus 80 ~prg-v~qRn~aL~~ir~~~~~~~~~~~~~~~~~~GVVyFADDdNtYs 126 (261)
T d3cu0a1 80 HPRG-VEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYS 126 (261)
T ss_dssp CCCS-HHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEEC
T ss_pred cccC-HHHHHHHHHHHHHcccccccccccccCCCceEEEEecCCCccc
Confidence 012 2479999998862 4899999886553
No 9
>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]}
Probab=61.55 E-value=19 Score=24.05 Aligned_cols=68 Identities=10% Similarity=0.046 Sum_probs=40.4
Q ss_pred eEEEEecCCchHHHHH---HHhcccc--ccCCEEEEEeCCCCchHHHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHh
Q psy5323 17 KVRLIRLKERAGLIRA---RIAGAEN--AKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAEN 91 (110)
Q Consensus 17 ~v~ii~~~~~~~~i~~---~l~~~~~--~~~~EiivVDD~d~t~~~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~ 91 (110)
..+||++-+|+.-+.. .|....+ +..++|+||+..++. .+ | -+...|.|+..
T Consensus 51 vaIIIPyRdR~~hL~~fl~~l~~~L~~q~~~y~I~vieQ~~~~----------~F-----------N--Rg~llNiGf~~ 107 (271)
T d1pzta_ 51 VAIIIPFRNRQEHLKYWLYYLHPILQRQQLDYGIYVINQAGES----------MF-----------N--RAKLLNVGFKE 107 (271)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSS----------CC-----------C--HHHHHHHHHHH
T ss_pred EEEEEecCChHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCc----------ch-----------h--hhhhhhHHHHH
Confidence 3477888888765543 3444322 235788888765221 11 1 34456666665
Q ss_pred c----CCCEEEEEcCCCCcC
Q psy5323 92 A----KGDVLMFLDSHCELG 107 (110)
Q Consensus 92 a----~g~~i~flD~d~~~~ 107 (110)
| .-++++|.|-|..+.
T Consensus 108 a~~~~~~~~~ifHDVDllP~ 127 (271)
T d1pzta_ 108 ALKDYDYNCFVFSDVDLIPM 127 (271)
T ss_dssp HHHHSCCCEEEEECTTEEES
T ss_pred hhhccCccEEEEecCCcCcc
Confidence 5 457799999997653
No 10
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=58.14 E-value=8 Score=22.60 Aligned_cols=10 Identities=20% Similarity=0.208 Sum_probs=4.9
Q ss_pred CCEEEEEeCC
Q psy5323 42 GDVLMFLDSH 51 (110)
Q Consensus 42 ~~EiivVDD~ 51 (110)
++++..+.|+
T Consensus 31 G~~v~~a~~g 40 (134)
T d1dcfa_ 31 GCEVTTVSSN 40 (134)
T ss_dssp TCEEEEESSH
T ss_pred CCEEEEECCH
Confidence 4455555444
No 11
>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=57.43 E-value=4.6 Score=23.63 Aligned_cols=19 Identities=5% Similarity=0.174 Sum_probs=8.2
Q ss_pred EEEEeCCCCchHHHHHHHh
Q psy5323 45 LMFLDSHYELQGKLDYYIQ 63 (110)
Q Consensus 45 iivVDD~d~t~~~l~~~~~ 63 (110)
|++|||.+.....+..+++
T Consensus 4 VLvVDD~~~~~~~l~~~L~ 22 (128)
T d2r25b1 4 ILVVEDNHVNQEVIKRMLN 22 (128)
T ss_dssp EEEECSCHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHH
Confidence 4455555333333444443
No 12
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=56.39 E-value=9.6 Score=25.23 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=48.2
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHhc--cCCCcEEEEEccCCcchHHHHHHHHHhcCCC-EEEEEcCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQT--RLPPKVRLIRLKERAGLIRARIAGAENAKGD-VLMFLDSHC 104 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~~--~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~-~i~flD~d~ 104 (110)
.++...+..+......++++|-.... ...+..++.. ..+.++.++..+...|.+.|...+......+ +++++-+|.
T Consensus 35 pii~~~l~~l~~~g~~~i~Iv~~~~~-~~~~~~~~~~~~~~~~~i~~v~e~~~~gta~Al~~a~~~l~~~~~~li~~~d~ 113 (295)
T d1lvwa_ 35 PMIYYPLSVLMLAGIRDILIISTPRD-LPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFIGDSKVALVLGDNV 113 (295)
T ss_dssp ETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTSEEEEEECSSCCCGGGHHHHTHHHHTTSCEEEEETTCC
T ss_pred EHHHHHHHHHHHCCCCeEEEEeCccc-HHHHHHHhccchhcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeCCcc
Confidence 46666666665555577877765521 2334444331 2233577788888889999998888887664 666665554
Q ss_pred C
Q psy5323 105 E 105 (110)
Q Consensus 105 ~ 105 (110)
.
T Consensus 114 ~ 114 (295)
T d1lvwa_ 114 F 114 (295)
T ss_dssp E
T ss_pred e
Confidence 3
No 13
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=53.43 E-value=7.9 Score=26.13 Aligned_cols=78 Identities=10% Similarity=0.098 Sum_probs=49.4
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHh--ccCCCcEEEEEccCCcchHHHHHHHHHhcCCC-EEEEEcCCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQ--TRLPPKVRLIRLKERAGLIRARIAGAENAKGD-VLMFLDSHC 104 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~--~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~-~i~flD~d~ 104 (110)
.+|.-.++.+..+.-.||++|-.+... ..+..++. +.++.+++++..+...|.+.|...+......+ .++.+-+|.
T Consensus 33 PiI~~~l~~l~~~Gi~ei~ii~~~~~~-~~i~~~~~~~~~~g~~I~y~~q~~~~Gta~ai~~a~~~i~~~~~~lil~dD~ 111 (292)
T d1fxoa_ 33 PMIYYPLSTLMLAGIREILIISTPQDT-PRFQQLLGDGSNWGLDLQYAVQPSPDGLAQAFLIGESFIGNDLSALVLGDNL 111 (292)
T ss_dssp ETTHHHHHHHHHTTCCEEEEEECTTTH-HHHHHHHTTSGGGTCEEEEEECSSCCCGGGHHHHTHHHHTTSEEEEEETTEE
T ss_pred ehHHHHHHHHHHCCCCEEEEEeCcCCH-HHHHHHhccccccCeEEEEccCCCCCcHHHHHHhhhhhcCCCceEEEEcccc
Confidence 445555555555556788877665221 22333332 13334688888888899999999999988876 455565555
Q ss_pred Cc
Q psy5323 105 EL 106 (110)
Q Consensus 105 ~~ 106 (110)
.+
T Consensus 112 ~~ 113 (292)
T d1fxoa_ 112 YY 113 (292)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 14
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}
Probab=47.04 E-value=9.9 Score=25.66 Aligned_cols=75 Identities=13% Similarity=0.176 Sum_probs=47.2
Q ss_pred HHHHHHHhccccccCCEEEEEeCCCCchHHHHHHHh--ccCCCcEEEEEccCCcchHHHHHHHHHhcCCCE-EEEEcCC
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQ--TRLPPKVRLIRLKERAGLIRARIAGAENAKGDV-LMFLDSH 103 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~d~t~~~l~~~~~--~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~-i~flD~d 103 (110)
.++...++.+....-.||++|-.+.. ....+.++. +++..+++++..++..|.+.|...+-....++- ++.+-+|
T Consensus 33 p~i~~~l~~l~~~gi~~i~iv~~~~~-~~~~~~~~~~g~~~gi~I~y~~Q~~plGta~Ai~~a~~fi~~~~~~lvlgdd 110 (291)
T d1mc3a_ 33 PMIYYPLSVLMLAGIREILIITTPED-KGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPSCLVLGDN 110 (291)
T ss_dssp ETTHHHHHHHHHTTCCEEEEEECTTT-HHHHHHHHTTSGGGTCEEEEEECSSCCCSTHHHHHTHHHHTTSCEEEEETTE
T ss_pred ehHHHHHHHHHHcCCCEEEEEeCccc-HHHHHHHhCchHhhCcEEEEEECCCCCchHHHHHHHHHHhCCCCeEEEECCC
Confidence 44555555555555678877765521 233444432 133335888888888999999999999888773 4444333
No 15
>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}
Probab=46.22 E-value=5.1 Score=23.73 Aligned_cols=19 Identities=0% Similarity=0.053 Sum_probs=8.7
Q ss_pred EEEEeCCCCchHHHHHHHh
Q psy5323 45 LMFLDSHYELQGKLDYYIQ 63 (110)
Q Consensus 45 iivVDD~d~t~~~l~~~~~ 63 (110)
|++|||.+.....+...++
T Consensus 5 ILiVDD~~~~~~~l~~~L~ 23 (140)
T d1k68a_ 5 IFLVEDNKADIRLIQEALA 23 (140)
T ss_dssp EEEECCCHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHH
Confidence 5555555333334444444
No 16
>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}
Probab=40.79 E-value=8.6 Score=22.75 Aligned_cols=9 Identities=22% Similarity=0.327 Sum_probs=4.9
Q ss_pred CEEEEEeCC
Q psy5323 43 DVLMFLDSH 51 (110)
Q Consensus 43 ~EiivVDD~ 51 (110)
.++..+.|+
T Consensus 30 ~~v~~a~~g 38 (144)
T d1i3ca_ 30 HELIILRDG 38 (144)
T ss_dssp EEEEEECSH
T ss_pred eEEEEECCH
Confidence 355555555
No 17
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=36.45 E-value=43 Score=20.54 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=31.7
Q ss_pred HHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEE
Q psy5323 57 KLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFL 100 (110)
Q Consensus 57 ~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~fl 100 (110)
.+...++ +. +..++.--...|+..|-+.|+..+.|.++-+.
T Consensus 25 ~lg~~La-~~--g~~lv~GGG~~GlMga~a~ga~~~gg~viGv~ 65 (181)
T d1ydhb_ 25 ELGNELV-KR--KIDLVYGGGSVGLMGLISRRVYEGGLHVLGII 65 (181)
T ss_dssp HHHHHHH-HT--TCEEEECCCSSHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHH-HC--CCeEEECCCchHHHHHHHHhHhhcCCcccccc
Confidence 3444555 32 57888877778999999999999999998664
No 18
>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]}
Probab=35.60 E-value=45 Score=20.59 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=42.2
Q ss_pred hhCCCeEEEEecCCchHHHH-HHHhccccccCCEEEEEeCC---CCchHHHHHHHhccCCCcEEEEEcc
Q psy5323 12 TRLPPKVRLIRLKERAGLIR-ARIAGAENAKGDVLMFLDSH---YELQGKLDYYIQTRLPPKVRLIRLK 76 (110)
Q Consensus 12 ~~lp~~v~ii~~~~~~~~i~-~~l~~~~~~~~~EiivVDD~---d~t~~~l~~~~~~~~~~~~~~i~~~ 76 (110)
+++|..+.+..+.+....+. .-+..+ ....+++++|-+ +.|.+.++...+ +++..+.++..+
T Consensus 41 ~~~~~~v~vs~SgGkDS~vllhl~~~~--~~~~~vvf~DTg~~fpeT~e~~~~~~~-~~~l~~~~~~~~ 106 (215)
T d1sura_ 41 DNLPGEYVLSSSFGIQAAVSLHLVNQI--RPDIPVILTDTGYLFPETYRFIDELTD-KLKLNLKVYRAT 106 (215)
T ss_dssp HHCCSEEEEECCCCTTHHHHHHHHHHH--STTCEEEEEECSCBCHHHHHHHHHHHH-HTTCEEEEEECS
T ss_pred HHCCCCEEEEecCChHHHHHHHHHHhc--CCCccEEEEECCcCcHHHHHHHHHHHH-hcCceeeEEecc
Confidence 36888888888887755543 333322 346899999999 567788887777 776456666543
No 19
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}
Probab=34.27 E-value=13 Score=21.55 Aligned_cols=7 Identities=29% Similarity=1.027 Sum_probs=2.9
Q ss_pred EEEEeCC
Q psy5323 45 LMFLDSH 51 (110)
Q Consensus 45 iivVDD~ 51 (110)
|++|||+
T Consensus 5 VLiVDD~ 11 (138)
T d1a04a2 5 ILLIDDH 11 (138)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 3444444
No 20
>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}
Probab=34.19 E-value=14 Score=21.05 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=7.5
Q ss_pred EEEEeCCCCchHHHHHHHh
Q psy5323 45 LMFLDSHYELQGKLDYYIQ 63 (110)
Q Consensus 45 iivVDD~d~t~~~l~~~~~ 63 (110)
|++|||.......+..++.
T Consensus 4 ILivDD~~~~~~~l~~~L~ 22 (123)
T d1dz3a_ 4 VCIADDNRELVSLLDEYIS 22 (123)
T ss_dssp EEEECSCHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHH
Confidence 3444444222333333443
No 21
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.60 E-value=6.8 Score=26.77 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=15.2
Q ss_pred hcCCCEEEEEcCCCCcCCC
Q psy5323 91 NAKGDVLMFLDSHCELGTN 109 (110)
Q Consensus 91 ~a~g~~i~flD~d~~~~~~ 109 (110)
...-||+.|+|+|..+...
T Consensus 139 ~~e~DyLf~~DaDm~f~~~ 157 (283)
T d1lzia_ 139 LSEVDYLVCVDVDMEFRDH 157 (283)
T ss_dssp HHHCSEEEEECSSEEECSC
T ss_pred hhcCCEEEEeecceEEecc
Confidence 3467999999999987654
No 22
>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=28.78 E-value=19 Score=20.88 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=7.7
Q ss_pred EEEEeCCCCchHHHHHHHh
Q psy5323 45 LMFLDSHYELQGKLDYYIQ 63 (110)
Q Consensus 45 iivVDD~d~t~~~l~~~~~ 63 (110)
|++|||.......+..+++
T Consensus 6 VLiVDD~~~~r~~l~~~L~ 24 (140)
T d1a2oa1 6 VLSVDDSALMRQIMTEIIN 24 (140)
T ss_dssp EEEECSCHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHH
Confidence 4444444333333344443
No 23
>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=27.92 E-value=62 Score=19.77 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=28.9
Q ss_pred cEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcC
Q psy5323 69 KVRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 102 (110)
Q Consensus 69 ~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~ 102 (110)
+..++.--...|+.+|-+.|+..+.|..+.++-.
T Consensus 38 g~~lV~GGG~~GlMga~a~ga~~~gg~v~Gi~~~ 71 (183)
T d2q4oa1 38 NIDLVYGGGSIGLMGLVSQAVHDGGRHVIGIIPK 71 (183)
T ss_dssp TCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEET
T ss_pred CCeEEECCCCcchHHHHHHHHHhcCCcccccccc
Confidence 5788887777899999999999999999876543
No 24
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]}
Probab=27.58 E-value=29 Score=20.95 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=39.1
Q ss_pred HHHHHHHhccccccCCEEEEEeCC-CCchHHHHHHHhccCCCcEEEEE--ccCCcchHHHHHHHHHhcCCCEEE
Q psy5323 28 GLIRARIAGAENAKGDVLMFLDSH-YELQGKLDYYIQTRLPPKVRLIR--LKERAGLIRARIAGAENAKGDVLM 98 (110)
Q Consensus 28 ~~i~~~l~~~~~~~~~EiivVDD~-d~t~~~l~~~~~~~~~~~~~~i~--~~~~~G~~~arn~G~~~a~g~~i~ 98 (110)
.++...+..+......+|+||-.+ ++. ++.+.. +++ ++++. .....|.+.|...+...-.+++++
T Consensus 35 pli~~~i~~l~~~g~~~i~iv~g~~~e~---i~~~~~-~~~--i~i~~~~~~~~~Gt~~sl~~a~~~l~~~~ii 102 (229)
T d1jyka_ 35 PLIEYQIEFLKEKGINDIIIIVGYLKEQ---FDYLKE-KYG--VRLVFNDKYADYNNFYSLYLVKEELANSYVI 102 (229)
T ss_dssp EHHHHHHHHHHHTTCCCEEEEECTTGGG---GTHHHH-HHC--CEEEECTTTTTSCTHHHHHTTGGGCTTEEEE
T ss_pred EHHHHHHHHHHHhCCcccccccccchhh---hhhhhh-hcc--ccccccccccccccccccccchhhhcccccc
Confidence 566666666654445678888765 332 233333 333 55554 445568988888888777766543
No 25
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}
Probab=25.50 E-value=60 Score=18.83 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=26.9
Q ss_pred EccCCcchHHHHHHHHHhcCCCEEEEEcCCCCc
Q psy5323 74 RLKERAGLIRARIAGAENAKGDVLMFLDSHCEL 106 (110)
Q Consensus 74 ~~~~~~G~~~arn~G~~~a~g~~i~flD~d~~~ 106 (110)
..+...|...+...++....+++++++-+|...
T Consensus 69 ~~~~~~~~~~g~~~~~~~~~~~~vlv~~~D~P~ 101 (188)
T d1e5ka_ 69 SLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPY 101 (188)
T ss_dssp CTTCCCSHHHHHHHHHHHCCSSEEEEEETTCTT
T ss_pred ccccccchhHHHHHHHHhcccceEEEeccCCCC
Confidence 345556778888889999999999999999764
No 26
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]}
Probab=25.07 E-value=51 Score=19.91 Aligned_cols=39 Identities=21% Similarity=0.224 Sum_probs=29.3
Q ss_pred HHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEE
Q psy5323 58 LDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFL 100 (110)
Q Consensus 58 l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~fl 100 (110)
+-+.++ +. ...+ ..-.+.|+..|-+.|+..+.|..+-++
T Consensus 28 lG~~la-~~--g~~V-~~GG~~GlM~ava~ga~~~gg~viGil 66 (170)
T d1rcua_ 28 LGRTLA-KK--GYLV-FNGGRDGVMELVSQGVREAGGTVVGIL 66 (170)
T ss_dssp HHHHHH-HT--TCEE-EECCSSHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHH-HC--CCEE-ECCCccCHHHHHHHHHHhcCCcccccc
Confidence 344555 32 3444 446778999999999999999999887
No 27
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=25.00 E-value=35 Score=19.62 Aligned_cols=11 Identities=0% Similarity=-0.432 Sum_probs=6.3
Q ss_pred cCCEEEEEeCC
Q psy5323 41 KGDVLMFLDSH 51 (110)
Q Consensus 41 ~~~EiivVDD~ 51 (110)
.++++..+.|+
T Consensus 24 ~g~~v~~a~~~ 34 (139)
T d1w25a1 24 EYYEVSTAMDG 34 (139)
T ss_dssp TTCEEEEESSH
T ss_pred CCCEEEEEccc
Confidence 35666666555
No 28
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}
Probab=23.20 E-value=76 Score=19.18 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=33.3
Q ss_pred HHHHHHhccCCCcEEEEEccCCcchHHHHHHHHHhcCCCEEEEEcCC
Q psy5323 57 KLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 103 (110)
Q Consensus 57 ~l~~~~~~~~~~~~~~i~~~~~~G~~~arn~G~~~a~g~~i~flD~d 103 (110)
.+.+.++ +. +..++.--...|+..|-+.|+..+.|..+.++...
T Consensus 24 ~lg~~la-~~--g~~lv~GGG~~GlMga~a~ga~~~gg~v~gv~~~~ 67 (179)
T d1t35a_ 24 ELGVYMA-EQ--GIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSG 67 (179)
T ss_dssp HHHHHHH-HT--TCEEEECCCCSHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred HHHHHHH-HC--CCeEEECCCchHHHHHHhcchhhcCCceeccccch
Confidence 3444555 32 57788777778999999999999999998876543
No 29
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}
Probab=23.00 E-value=72 Score=19.38 Aligned_cols=48 Identities=8% Similarity=0.076 Sum_probs=31.7
Q ss_pred hHHHHHHhhhCCCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC
Q psy5323 4 GKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 51 (110)
Q Consensus 4 ~~l~~~~~~~lp~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~ 51 (110)
+.++..++++-|+.+.++..-+.++-+-+.+.++.......++++++.
T Consensus 10 ~~~~~~l~~~~~~~~vvLd~i~~p~NiG~IiRta~afG~~~v~l~~~~ 57 (191)
T d1v2xa_ 10 RRIEEVLRRRQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPT 57 (191)
T ss_dssp HHHHHHHTTCBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGG
T ss_pred HHHHHHHhcCCCCEEEEEeCCCCCchHHHHHHHHHhhccccccccCCc
Confidence 457777777667677777766666666665555544444688888766
No 30
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.58 E-value=14 Score=25.16 Aligned_cols=98 Identities=13% Similarity=0.207 Sum_probs=48.0
Q ss_pred HHHHHh-hhCCCeEEEEecCCch-HHHHHHHhccccc--cCCE---EEEEeCC-CCchHHHHHHHhccCCCcEEEEEccC
Q psy5323 6 LDYYIQ-TRLPPKVRLIRLKERA-GLIRARIAGAENA--KGDV---LMFLDSH-YELQGKLDYYIQTRLPPKVRLIRLKE 77 (110)
Q Consensus 6 l~~~~~-~~lp~~v~ii~~~~~~-~~i~~~l~~~~~~--~~~E---iivVDD~-d~t~~~l~~~~~~~~~~~~~~i~~~~ 77 (110)
|+.+-+ |++--.+-++-+..-- .++..-+.|+... .+.+ .|+.|+. ..-.-.+. .. .+++++..++
T Consensus 37 l~~~y~~~~~tIgl~vfAtgkY~~~Fl~~FleSaEk~Fm~g~~v~yyVFTD~~~~~P~i~l~-----~~-r~~~v~~v~~ 110 (287)
T d1o7qa_ 37 LDNYYAKQKITVGLTVFAVGRYIEHYLEEFLTSANKHFMVGHPVIFYIMVDDVSRMPLIELG-----PL-RSFKVFKIKP 110 (287)
T ss_dssp HHHHHHHHTCCEEEEEEECTTHHHHHHHHHHHHHHHHBSTTSCEEEEEEESCGGGCCCCCCC-----TT-EEEEEEECCC
T ss_pred HHHHHhhcCceEEEEEEEeChhHHHHHHHHHHHHHHhcCCCCeEEEEEEECCcccCCccccC-----Cc-cceEEEEccc
Confidence 455555 3332222333344443 4777777777632 2333 3455553 11000000 11 1577776544
Q ss_pred Ccc---hHHHHHHHHH-------hcCCCEEEEEcCCCCcCCC
Q psy5323 78 RAG---LIRARIAGAE-------NAKGDVLMFLDSHCELGTN 109 (110)
Q Consensus 78 ~~G---~~~arn~G~~-------~a~g~~i~flD~d~~~~~~ 109 (110)
..+ .+--|-.=+. ...-||+.|+|+|..+...
T Consensus 111 ~~~Wp~iTL~Rm~~i~~~i~~~~~~e~Dylf~~DaDm~f~~~ 152 (287)
T d1o7qa_ 111 EKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDK 152 (287)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSC
T ss_pred cCCCchhHHHHHHHHHHHHHHhhhccCCeEEEEeCCceEecc
Confidence 333 4444443332 2366999999999887543
No 31
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.54 E-value=73 Score=18.71 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=33.0
Q ss_pred hHHHHHHhhhCCCeEEEEecCCchHHHHHHHhccccccCCEEEEEeCC-CCc
Q psy5323 4 GKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH-YEL 54 (110)
Q Consensus 4 ~~l~~~~~~~lp~~v~ii~~~~~~~~i~~~l~~~~~~~~~EiivVDD~-d~t 54 (110)
..|++++++.-++.+.++-.-+.++-+.+.+.++.......|++++++ +..
T Consensus 6 ~~l~~~~~~~~~~~~vvLd~i~~p~N~GaiiRta~afG~~~v~~~~~~~~~~ 57 (166)
T d1gz0a1 6 NDLPDLIASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQL 57 (166)
T ss_dssp GGHHHHHHTCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCC
T ss_pred ccHHHHHhccCCCEEEEEeCCCCcchHHHHHHHHHhcCCceeeeeccccccc
Confidence 457888875434455566555666777666666655556688888887 443
No 32
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.68 E-value=26 Score=19.59 Aligned_cols=11 Identities=9% Similarity=0.084 Sum_probs=5.6
Q ss_pred cCCEEEEEeCC
Q psy5323 41 KGDVLMFLDSH 51 (110)
Q Consensus 41 ~~~EiivVDD~ 51 (110)
.++++....++
T Consensus 23 ~g~~v~~a~~~ 33 (119)
T d1zh2a1 23 DGMRVFEAETL 33 (119)
T ss_dssp TTCEEEEESSH
T ss_pred CCCEEEEeCCH
Confidence 34555555444
No 33
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=21.25 E-value=82 Score=19.86 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=42.2
Q ss_pred hHHHHHHHhccccc---cCCEEEEEeCC--CCchHHHHHHHhccCCCcEEEEEccCC------------cchHHHHHHHH
Q psy5323 27 AGLIRARIAGAENA---KGDVLMFLDSH--YELQGKLDYYIQTRLPPKVRLIRLKER------------AGLIRARIAGA 89 (110)
Q Consensus 27 ~~~i~~~l~~~~~~---~~~EiivVDD~--d~t~~~l~~~~~~~~~~~~~~i~~~~~------------~G~~~arn~G~ 89 (110)
...+...+.|+... ...-+.+++++ +.....+..... .....++++..... .-..-+|-.=.
T Consensus 12 ~~~~~~~i~SL~~~~~~~~~~~~il~~~~~~~~~~~l~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~l~ 90 (282)
T d1ga8a_ 12 AAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLR-GGGGNIRFIDVNPEDFAGFPLNIRHISITTYARLKLG 90 (282)
T ss_dssp HHHHHHHHHHHHHHCTTSCCEEEEEESSCCHHHHHHHHHTSG-GGTTTEEEEECCGGGGTTSCCCCTTCCGGGGGGGGHH
T ss_pred HHHHHHHHHHHHHHCcCCCEEEEEEcCCCCHHHHHHHHHHHH-HcCCeEEEEECCchHhccccccccccCHHHHHHHHHh
Confidence 34444556665432 24567788888 334455555544 33335776653211 11222333323
Q ss_pred Hhc-CCCEEEEEcCCCCcCC
Q psy5323 90 ENA-KGDVLMFLDSHCELGT 108 (110)
Q Consensus 90 ~~a-~g~~i~flD~d~~~~~ 108 (110)
+.- .=+-+++||+|+.+..
T Consensus 91 ~~lp~~~kiiyLD~D~iv~~ 110 (282)
T d1ga8a_ 91 EYIADCDKVLYLDIDVLVRD 110 (282)
T ss_dssp HHCCSCSCEEEECSSEEECS
T ss_pred hhCCccceEEEecCCEEEec
Confidence 322 2356999999988654
No 34
>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=20.89 E-value=55 Score=18.92 Aligned_cols=9 Identities=11% Similarity=0.228 Sum_probs=5.4
Q ss_pred CCCEEEEEc
Q psy5323 93 KGDVLMFLD 101 (110)
Q Consensus 93 ~g~~i~flD 101 (110)
..|.++++|
T Consensus 71 ~aD~vilt~ 79 (151)
T d1j6ua2 71 LADEVVVTE 79 (151)
T ss_dssp TSSEEEECC
T ss_pred cccceeeec
Confidence 556666664
No 35
>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=20.76 E-value=81 Score=18.77 Aligned_cols=7 Identities=29% Similarity=0.059 Sum_probs=3.2
Q ss_pred cEEEEEc
Q psy5323 69 KVRLIRL 75 (110)
Q Consensus 69 ~~~~i~~ 75 (110)
.+.++++
T Consensus 27 ~~~vi~~ 33 (195)
T d1qdlb_ 27 YPIVIRN 33 (195)
T ss_dssp EEEEEET
T ss_pred eEEEEeC
Confidence 3445543
Done!