RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5323
(110 letters)
>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
mucin-type O-linked glycans. UDP-GalNAc: polypeptide
alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
initiate the formation of mucin-type, O-linked glycans
by catalyzing the transfer of
alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
hydroxyl groups of Ser or Thr residues of core proteins
to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
enzymes are type II membrane proteins with a GT-A type
catalytic domain and a lectin domain located on the
lumen side of the Golgi apparatus. In human, there are
15 isozymes of pp-GalNAc-Ts, representing the largest of
all glycosyltransferase families. Each isozyme has
unique but partially redundant substrate specificity for
glycosylation sites on acceptor proteins.
Length = 299
Score = 90.7 bits (226), Expect = 2e-23
Identities = 34/58 (58%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 53 ELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCELGTNW 110
EL+ L+ Y + + PKV+++RLK+R GLIRARIAGA A GDVL+FLDSHCE+ W
Sbjct: 44 ELKLLLEEYYK-KYLPKVKVLRLKKREGLIRARIAGARAATGDVLVFLDSHCEVNVGW 100
Score = 79.6 bits (197), Expect = 3e-19
Identities = 32/53 (60%), Positives = 41/53 (77%), Gaps = 1/53 (1%)
Query: 1 ELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHYE 53
EL+ L+ Y + + PKV+++RLK+R GLIRARIAGA A GDVL+FLDSH E
Sbjct: 44 ELKLLLEEYYK-KYLPKVKVLRLKKREGLIRARIAGARAATGDVLVFLDSHCE 95
>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse
family, transferring sugar from UDP-glucose,
UDP-N-acetyl- galactosamine, GDP-mannose or
CDP-abequose, to a range of substrates including
cellulose, dolichol phosphate and teichoic acids.
Length = 168
Score = 49.8 bits (119), Expect = 1e-08
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 67 PPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCELGTNW 110
P+VR+IRL+E G AR AG + A GD + FLD+ E+ +W
Sbjct: 52 DPRVRVIRLEENLGKAAARNAGLKLATGDYIAFLDADDEVAPDW 95
Score = 46.3 bits (110), Expect = 2e-07
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 15 PPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHYEL 54
P+VR+IRL+E G AR AG + A GD + FLD+ E+
Sbjct: 52 DPRVRVIRLEENLGKAAARNAGLKLATGDYIAFLDADDEV 91
>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A)
includes diverse families of glycosyl transferases with
a common GT-A type structural fold.
Glycosyltransferases (GTs) are enzymes that synthesize
oligosaccharides, polysaccharides, and glycoconjugates
by transferring the sugar moiety from an activated
nucleotide-sugar donor to an acceptor molecule, which
may be a growing oligosaccharide, a lipid, or a protein.
Based on the stereochemistry of the donor and acceptor
molecules, GTs are classified as either retaining or
inverting enzymes. To date, all GT structures adopt one
of two possible folds, termed GT-A fold and GT-B fold.
This hierarchy includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta domains
that tend to form a continuous central sheet of at least
eight beta-strands. The majority of the proteins in this
superfamily are Glycosyltransferase family 2 (GT-2)
proteins. But it also includes families GT-43, GT-6,
GT-8, GT13 and GT-7; which are evolutionarily related to
GT-2 and share structure similarities.
Length = 156
Score = 42.5 bits (100), Expect = 4e-06
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 67 PPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCELGTNW 110
P+V + +E GL AR AG + A+G+ ++FLD+ L +W
Sbjct: 51 DPRVIRVINEENQGLAAARNAGLKAARGEYILFLDADDLLLPDW 94
Score = 37.9 bits (88), Expect = 2e-04
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 15 PPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIR 74
P+V + +E GL AR AG + A+G+ ++FLD+ D + L V +
Sbjct: 51 DPRVIRVINEENQGLAAARNAGLKAARGEYILFLDAD-------DLLLPDWLERLVAELL 103
Query: 75 LKERAGLI 82
A +
Sbjct: 104 ADPEADAV 111
>gnl|CDD|234419 TIGR03965, mycofact_glyco, mycofactocin system glycosyltransferase.
Members of this protein family are putative
glycosyltransferases, members of pfam00535 (glycosyl
transferase family 2). Members appear mostly in the
Actinobacteria, where they appear to be part of a system
for converting a precursor peptide (TIGR03969) into a
novel redox carrier designated mycofactocin. A radical
SAM enzyme, TIGR03962, is a proposed to be a key
maturase for mycofactocin.
Length = 467
Score = 37.0 bits (86), Expect = 8e-04
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 70 VRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCELGTNW 110
VR+IR R G AR AGA A+ + + F DS W
Sbjct: 131 VRVIRHPRRQGPAAARNAGARAARTEFVAFTDSDVVPRPGW 171
Score = 34.0 bits (78), Expect = 0.009
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 18 VRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 50
VR+IR R G AR AGA A+ + + F DS
Sbjct: 131 VRVIRHPRRQGPAAARNAGARAARTEFVAFTDS 163
>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the
biosynthesis of succinoglycan. Succinoglycan
Biosynthesis Protein ExoA catalyzes the formation of a
beta-1,3 linkage of the second sugar (glucose) of the
succinoglycan with the galactose on the lipid carrie.
Succinoglycan is an acidic exopolysaccharide that is
important for invasion of the nodules. Succinoglycan is
a high-molecular-weight polymer composed of repeating
octasaccharide units. These units are synthesized on
membrane-bound isoprenoid lipid carriers, beginning with
galactose followed by seven glucose molecules, and
modified by the addition of acetate, succinate, and
pyruvate. ExoA is a membrane protein with a
transmembrance domain at c-terminus.
Length = 249
Score = 34.5 bits (80), Expect = 0.005
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 62 IQTRLPPKVRLIRLKERAGLIR--ARIAGAENAKGDVLMFLDSHCELGTNW 110
I K IRL + I+ G N++GD+++ +D+H ++
Sbjct: 48 IVQEYAAKDPRIRLIDNPKRIQSAGLNIGIRNSRGDIIIRVDAHAVYPKDY 98
Score = 28.0 bits (63), Expect = 1.0
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 10 IQTRLPPKVRLIRLKERAGLIR--ARIAGAENAKGDVLMFLDSH 51
I K IRL + I+ G N++GD+++ +D+H
Sbjct: 48 IVQEYAAKDPRIRLIDNPKRIQSAGLNIGIRNSRGDIIIRVDAH 91
>gnl|CDD|133022 cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member
of the Glycosyltransferase 2 superfamily. DPM1 is the
catalytic subunit of eukaryotic dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. In higher eukaryotes,the enzyme has three
subunits, DPM1, DPM2 and DPM3. DPM is synthesized from
dolichol phosphate and GDP-Man on the cytosolic surface
of the ER membrane by DPM synthase and then is flipped
onto the luminal side and used as a donor substrate. In
lower eukaryotes, such as Saccharomyces cerevisiae and
Trypanosoma brucei, DPM synthase consists of a single
component (Dpm1p and TbDpm1, respectively) that
possesses one predicted transmembrane region near the C
terminus for anchoring to the ER membrane. In contrast,
the Dpm1 homologues of higher eukaryotes, namely
fission yeast, fungi, and animals, have no
transmembrane region, suggesting the existence of
adapter molecules for membrane anchoring. This family
also includes bacteria and archaea DPM1_like enzymes.
However, the enzyme structure and mechanism of function
are not well understood. The
UDP-glucose:dolichyl-phosphate glucosyltransferase
(DPG_synthase) is a transmembrane-bound enzyme of the
endoplasmic reticulum involved in protein N-linked
glycosylation. This enzyme catalyzes the transfer of
glucose from UDP-glucose to dolichyl phosphate. This
protein family belongs to Glycosyltransferase 2
superfamily.
Length = 185
Score = 33.7 bits (78), Expect = 0.007
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 16 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 50
P+VR+IRL G A AG + A+GD+++ +D+
Sbjct: 54 PRVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDA 88
Score = 33.7 bits (78), Expect = 0.007
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 68 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 102
P+VR+IRL G A AG + A+GD+++ +D+
Sbjct: 54 PRVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDA 88
>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 166
Score = 32.5 bits (75), Expect = 0.018
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 13 RLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRL 72
L P+VRLIR E G G AKGD ++ L+ ++ L +
Sbjct: 46 ELFPEVRLIRNGENLGFGAGNNQGIREAKGDYVLLLNPDTVVEPGA-------LLELLDA 98
Query: 73 IRLKERAGLIRARIAGA 89
G++ +++GA
Sbjct: 99 AEQDPDVGIVGPKVSGA 115
Score = 29.1 bits (66), Expect = 0.30
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 65 RLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLD 101
L P+VRLIR E G G AKGD ++ L+
Sbjct: 46 ELFPEVRLIRNGENLGFGAGNNQGIREAKGDYVLLLN 82
>gnl|CDD|133062 cd06442, DPM1_like, DPM1_like represents putative enzymes similar
to eukaryotic DPM1. Proteins similar to eukaryotic
DPM1, including enzymes from bacteria and archaea; DPM1
is the catalytic subunit of eukaryotic
dolichol-phosphate mannose (DPM) synthase. DPM synthase
is required for synthesis of the
glycosylphosphatidylinositol (GPI) anchor, N-glycan
precursor, protein O-mannose, and C-mannose. In higher
eukaryotes,the enzyme has three subunits, DPM1, DPM2
and DPM3. DPM is synthesized from dolichol phosphate
and GDP-Man on the cytosolic surface of the ER membrane
by DPM synthase and then is flipped onto the luminal
side and used as a donor substrate. In lower
eukaryotes, such as Saccharomyces cerevisiae and
Trypanosoma brucei, DPM synthase consists of a single
component (Dpm1p and TbDpm1, respectively) that
possesses one predicted transmembrane region near the C
terminus for anchoring to the ER membrane. In contrast,
the Dpm1 homologues of higher eukaryotes, namely
fission yeast, fungi, and animals, have no
transmembrane region, suggesting the existence of
adapter molecules for membrane anchoring. This family
also includes bacteria and archaea DPM1_like enzymes.
However, the enzyme structure and mechanism of function
are not well understood. This protein family belongs to
Glycosyltransferase 2 superfamily.
Length = 224
Score = 31.7 bits (73), Expect = 0.037
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 16 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLD---SH 51
P+VRLI + GL A I G + A+GDV++ +D SH
Sbjct: 53 PRVRLIVRPGKRGLGSAYIEGFKAARGDVIVVMDADLSH 91
Score = 31.7 bits (73), Expect = 0.037
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 68 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLD---SH 103
P+VRLI + GL A I G + A+GDV++ +D SH
Sbjct: 53 PRVRLIVRPGKRGLGSAYIEGFKAARGDVIVVMDADLSH 91
>gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related
to eukaryotic DPM1. A family of bacterial enzymes
related to eukaryotic DPM1; Although the mechanism of
eukaryotic enzyme is well studied, the mechanism of the
bacterial enzymes is not well understood. The
eukaryotic DPM1 is the catalytic subunit of eukaryotic
Dolichol-phosphate mannose (DPM) synthase. DPM synthase
is required for synthesis of the
glycosylphosphatidylinositol (GPI) anchor, N-glycan
precursor, protein O-mannose, and C-mannose. The enzyme
has three subunits, DPM1, DPM2 and DPM3. DPM is
synthesized from dolichol phosphate and GDP-Man on the
cytosolic surface of the ER membrane by DPM synthase
and then is flipped onto the luminal side and used as a
donor substrate. This protein family belongs to
Glycosyltransferase 2 superfamily.
Length = 181
Score = 31.3 bits (72), Expect = 0.059
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 16 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 50
P+V++IRL G A +AG ++A+GD ++ +D+
Sbjct: 55 PRVKVIRLSRNFGQQAALLAGLDHARGDAVITMDA 89
Score = 31.3 bits (72), Expect = 0.059
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 68 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 102
P+V++IRL G A +AG ++A+GD ++ +D+
Sbjct: 55 PRVKVIRLSRNFGQQAALLAGLDHARGDAVITMDA 89
>gnl|CDD|223539 COG0463, WcaA, Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 291
Score = 30.1 bits (66), Expect = 0.17
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 16 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQ 63
+V + + GL AR AG E A+GD ++FLD+ + +L +
Sbjct: 58 VRVIRLINERNGGLGAARNAGLEYARGDYIVFLDADDQHPPELIPLVA 105
Score = 30.1 bits (66), Expect = 0.17
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 68 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 102
+V + + GL AR AG E A+GD ++FLD+
Sbjct: 58 VRVIRLINERNGGLGAARNAGLEYARGDYIVFLDA 92
>gnl|CDD|133056 cd06434, GT2_HAS, Hyaluronan synthases catalyze polymerization of
hyaluronan. Hyaluronan synthases (HASs) are
bi-functional glycosyltransferases that catalyze
polymerization of hyaluronan. HASs transfer both GlcUA
and GlcNAc in beta-(1,3) and beta-(1,4) linkages,
respectively to the hyaluronan chain using UDP-GlcNAc
and UDP-GlcUA as substrates. HA is made as a free
glycan, not attached to a protein or lipid. HASs do not
need a primer for HA synthesis; they initiate HA
biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA,
and Mg2+. Hyaluronan (HA) is a linear
heteropolysaccharide composed of (1-3)-linked
beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can
be found in vertebrates and a few microbes and is
typically on the cell surface or in the extracellular
space, but is also found inside mammalian cells.
Hyaluronan has several physiochemical and biological
functions such as space filling, lubrication, and
providing a hydrated matrix through which cells can
migrate.
Length = 235
Score = 29.9 bits (68), Expect = 0.19
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 10 IQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 51
QT + + G RA G + D+++ LDS
Sbjct: 47 SQTVKYGGIF-VITVPHPGKRRALAEGIRHVTTDIVVLLDSD 87
Score = 29.9 bits (68), Expect = 0.19
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 62 IQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 103
QT + + G RA G + D+++ LDS
Sbjct: 47 SQTVKYGGIF-VITVPHPGKRRALAEGIRHVTTDIVVLLDSD 87
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 28.7 bits (64), Expect = 0.55
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 13 RLPPKVRLIRL-KERAGLIRARIAGAENAKGDVLMFLDS 50
P R+I K+ G A G + AKGDV++ LD+
Sbjct: 108 EYGPNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDA 146
Score = 28.7 bits (64), Expect = 0.55
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 65 RLPPKVRLIRL-KERAGLIRARIAGAENAKGDVLMFLDS 102
P R+I K+ G A G + AKGDV++ LD+
Sbjct: 108 EYGPNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDA 146
>gnl|CDD|133027 cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC like proteins
are required for O-antigen biosynthesis. The rfbC gene
encodes a predicted protein of 1,276 amino acids, which
is required for O-antigen biosynthesis in Myxococcus
xanthus. It is a subfamily of Glycosyltransferase
Family GT2, which includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 202
Score = 27.6 bits (62), Expect = 1.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 16 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHYEL 54
P+++++ +E G+ A + E A G+ + LD EL
Sbjct: 58 PRIKVVFREENGGISAATNSALELATGEFVALLDHDDEL 96
Score = 27.6 bits (62), Expect = 1.2
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 68 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 102
P+++++ +E G+ A + E A G+ + LD
Sbjct: 58 PRIKVVFREENGGISAATNSALELATGEFVALLDH 92
>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 229
Score = 27.6 bits (62), Expect = 1.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 88 GAENAKGDVLMFLDSHCELGTNW 110
+ AKGD ++ D+ C + +NW
Sbjct: 77 AIKAAKGDWIVTTDADCVVPSNW 99
>gnl|CDD|234532 TIGR04283, glyco_like_mftF, transferase 2,
rSAM/selenodomain-associated. This enzyme may transfer
a nucleotide, or it sugar moiety, as part of a
biosynthetic pathway. Other proposed members of the
pathway include another transferase (TIGR04282), a
phosphoesterase, and a radical SAM enzyme (TIGR04167)
whose C-terminal domain (pfam12345) frequently contains
a selenocysteine [Unknown function, Enzymes of unknown
specificity].
Length = 220
Score = 27.5 bits (62), Expect = 1.4
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 83 RAR--IAGAENAKGDVLMFLDSHCELGTNW 110
RAR AGA AKGD+L+FL + L ++
Sbjct: 59 RARQMNAGAALAKGDILLFLHADTRLPKDF 88
Score = 26.7 bits (60), Expect = 2.5
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 31 RAR--IAGAENAKGDVLMFL 48
RAR AGA AKGD+L+FL
Sbjct: 59 RARQMNAGAALAKGDILLFL 78
>gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional.
Length = 328
Score = 26.9 bits (60), Expect = 2.2
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 16 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLD 49
P VRL+ + AG+ AR G A G + F D
Sbjct: 61 PHVRLLH-QANAGVSVARNTGLAVATGKYVAFPD 93
Score = 26.9 bits (60), Expect = 2.2
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 68 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLD 101
P VRL+ + AG+ AR G A G + F D
Sbjct: 61 PHVRLLH-QANAGVSVARNTGLAVATGKYVAFPD 93
>gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase
superfamily. The cellulose synthase (CESA) superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members include cellulose synthase catalytic subunit,
chitin synthase, glucan biosynthesis protein and other
families of CESA-like proteins. Cellulose synthase
catalyzes the polymerization reaction of cellulose, an
aggregate of unbranched polymers of beta-1,4-linked
glucose residues in plants, most algae, some bacteria
and fungi, and even some animals. In bacteria, algae
and lower eukaryotes, there is a second unrelated type
of cellulose synthase (Type II), which produces
acylated cellulose, a derivative of cellulose. Chitin
synthase catalyzes the incorporation of GlcNAc from
substrate UDP-GlcNAc into chitin, which is a linear
homopolymer of beta-(1,4)-linked GlcNAc residues and
Glucan Biosynthesis protein catalyzes the elongation of
beta-1,2 polyglucose chains of Glucan.
Length = 180
Score = 26.4 bits (59), Expect = 2.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 13 RLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 50
+V ++R KE G A AG +AKGD+++ LD+
Sbjct: 50 LYIRRVLVVRDKENGGKAGALNAGLRHAKGDIVVVLDA 87
Score = 26.4 bits (59), Expect = 2.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 65 RLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 102
+V ++R KE G A AG +AKGD+++ LD+
Sbjct: 50 LYIRRVLVVRDKENGGKAGALNAGLRHAKGDIVVVLDA 87
>gnl|CDD|133013 cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase
family-2 subfamily with unknown function.
Glycosyltransferase family 2 (GT-2) subfamily of unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 221
Score = 26.4 bits (59), Expect = 3.1
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 16/56 (28%)
Query: 35 AGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPK-VRLIRLKERAGLIRARIAGA 89
AGA A+GD L+FL H TRLPP I RA +AGA
Sbjct: 66 AGAAAARGDWLLFL--H----------ADTRLPPDWDAAIIETLRA---DGAVAGA 106
Score = 26.4 bits (59), Expect = 3.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 87 AGAENAKGDVLMFLDSHCELGTNW 110
AGA A+GD L+FL + L +W
Sbjct: 66 AGAAAARGDWLLFLHADTRLPPDW 89
>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose
synthase (CESA) superfamily. This is a subfamily of
cellulose synthase (CESA) superfamily. CESA superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members of the superfamily include cellulose synthase
catalytic subunit, chitin synthase, glucan biosynthesis
protein and other families of CESA-like proteins.
Length = 251
Score = 26.0 bits (58), Expect = 4.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 14 LPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLD 49
V+L+R ER G A A G++++F D
Sbjct: 82 ADKGVKLLRFPERRGKAAALNRALALATGEIVVFTD 117
Score = 26.0 bits (58), Expect = 4.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 66 LPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLD 101
V+L+R ER G A A G++++F D
Sbjct: 82 ADKGVKLLRFPERRGKAAALNRALALATGEIVVFTD 117
>gnl|CDD|217628 pfam03587, EMG1, EMG1/NEP1 methyltransferase. Members of this
family are essential for 40S ribosomal biogenesis. The
structure of EMG1 has revealed that it is a novel
member of the superfamily of alpha/beta knot fold
methyltransferases.
Length = 200
Score = 25.2 bits (56), Expect = 7.2
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 45 LMFLDSHYELQGKLDYYIQTR------LPPKVRLIR 74
LM LDS G L YI TR + P+ R+ R
Sbjct: 51 LMLLDSPLNKAGLLRVYIHTRDGVLIEVSPETRVPR 86
>gnl|CDD|219812 pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and
nitrite sensing domain (NIT) is found in receptor
components of signal transducing pathways in bacteria
which control gene expression, cellular motility and
enzyme activity in response to nitrate and nitrite
concentrations. The NIT domain is predicted to be all
alpha-helical in structure.
Length = 247
Score = 25.3 bits (56), Expect = 7.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 20 LIRLKERAGLIRARIAGA 37
L++ KERAG RA +AGA
Sbjct: 128 LLQAKERAGQERAVLAGA 145
Score = 25.3 bits (56), Expect = 7.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 72 LIRLKERAGLIRARIAGA 89
L++ KERAG RA +AGA
Sbjct: 128 LLQAKERAGQERAVLAGA 145
>gnl|CDD|235238 PRK04171, PRK04171, ribosome biogenesis protein; Provisional.
Length = 222
Score = 25.2 bits (56), Expect = 8.3
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 45 LMFLDSHYELQGKLDYYIQTR------LPPKVRLIR 74
L+ LDS +GKL YI TR + P+ RL +
Sbjct: 69 LVALDSPLNKEGKLRVYIHTRDDKVIYVNPETRLPK 104
>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein
N-linked glycosylation. UDP-glucose:dolichyl-phosphate
glucosyltransferase (DPG_synthase) is a
transmembrane-bound enzyme of the endoplasmic reticulum
involved in protein N-linked glycosylation. This enzyme
catalyzes the transfer of glucose from UDP-glucose to
dolichyl phosphate.
Length = 211
Score = 24.8 bits (55), Expect = 9.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 10 IQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLD 49
+ + P +R++ L + G A AG A+GD ++F D
Sbjct: 51 LARKNPALIRVLTLPKNRGKGGAVRAGMLAARGDYILFAD 90
Score = 24.8 bits (55), Expect = 9.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 62 IQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLD 101
+ + P +R++ L + G A AG A+GD ++F D
Sbjct: 51 LARKNPALIRVLTLPKNRGKGGAVRAGMLAARGDYILFAD 90
>gnl|CDD|184755 PRK14583, hmsR, N-glycosyltransferase; Provisional.
Length = 444
Score = 25.3 bits (55), Expect = 9.8
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 16 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRL--PPKVRLI 73
P++R+I L G A GA A+ + L+ +D L Y+ L P+ +
Sbjct: 130 PRLRVIHLAHNQGKAIALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAV 189
Query: 74 ----RLKERAGLI 82
R++ R+ LI
Sbjct: 190 TGNPRIRTRSTLI 202
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.142 0.417
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,845,724
Number of extensions: 527761
Number of successful extensions: 515
Number of sequences better than 10.0: 1
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 65
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.3 bits)