RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5323
(110 letters)
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 75.9 bits (186), Expect = 1e-17
Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 50 SHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCELGTN 109
L+ L+ Y++ +L V +IR+++R+GLIRAR+ GA ++G V+ FLD+HCE
Sbjct: 72 ERDFLKRPLESYVK-KLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAG 130
Query: 110 W 110
W
Sbjct: 131 W 131
Score = 65.9 bits (160), Expect = 3e-14
Identities = 23/54 (42%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 2 LQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHYELQ 55
L+ L+ Y++ +L V +IR+++R+GLIRAR+ GA ++G V+ FLD+H E
Sbjct: 76 LKRPLESYVK-KLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECT 128
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 72.6 bits (177), Expect = 1e-16
Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 53 ELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCELGTNW 110
L+ L+ Y+ P VR++R K+R GLIR R+ GA A GDV+ FLDSHCE NW
Sbjct: 158 HLKKPLEDYMALF--PSVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNW 213
Score = 66.0 bits (160), Expect = 4e-14
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 1 ELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHYE 53
L+ L+ Y+ P VR++R K+R GLIR R+ GA A GDV+ FLDSH E
Sbjct: 158 HLKKPLEDYMALF--PSVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCE 208
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 64.0 bits (155), Expect = 1e-13
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 68 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCELGTNW 110
KVR++R R GL+R+R+ GA+ A+ VL FLDSHCE +W
Sbjct: 121 EKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHW 163
Score = 55.2 bits (132), Expect = 2e-10
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 16 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHYE 53
KVR++R R GL+R+R+ GA+ A+ VL FLDSH E
Sbjct: 121 EKVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCE 158
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic
membrane protein, structural protein; 2.70A
{Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A*
3l7l_A* 3l7m_A*
Length = 729
Score = 44.6 bits (105), Expect = 9e-07
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 6 LDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 50
+D I+ +R I L E +G AR E + MFLD+
Sbjct: 49 MDEAIK-DYDKNIRFIDLDENSGHAHARNIALEEVETPYFMFLDA 92
Score = 44.6 bits (105), Expect = 9e-07
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 58 LDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 102
+D I+ +R I L E +G AR E + MFLD+
Sbjct: 49 MDEAIK-DYDKNIRFIDLDENSGHAHARNIALEEVETPYFMFLDA 92
>3bcv_A Putative glycosyltransferase protein; protein structure
initiative II, PSI-II NYSGXRC, structural genomics;
2.35A {Bacteroides fragilis}
Length = 240
Score = 35.3 bits (82), Expect = 0.001
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 16 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 50
P +++I K+ AGL A +G + A G+ + F DS
Sbjct: 60 PNIKVIH-KKNAGLGMACNSGLDVATGEYVAFCDS 93
Score = 35.3 bits (82), Expect = 0.001
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 68 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 102
P +++I K+ AGL A +G + A G+ + F DS
Sbjct: 60 PNIKVIH-KKNAGLGMACNSGLDVATGEYVAFCDS 93
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 34.5 bits (79), Expect = 0.003
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 16 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 50
P+VR I ++ G+ A +G + LDS
Sbjct: 430 PRVRFIS-QKNKGIGSASNTAVRLCRGFYIGQLDS 463
Score = 34.5 bits (79), Expect = 0.003
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 68 PKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDS 102
P+VR I ++ G+ A +G + LDS
Sbjct: 430 PRVRFIS-QKNKGIGSASNTAVRLCRGFYIGQLDS 463
Score = 31.4 bits (71), Expect = 0.035
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 16 PKVRLIRLKER-AGLIRARIAGAENAKGDVLMFLDS 50
++ +R K+ L R G AK + + LD
Sbjct: 148 LNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDC 183
Score = 31.4 bits (71), Expect = 0.035
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 68 PKVRLIRLKER-AGLIRARIAGAENAKGDVLMFLDS 102
++ +R K+ L R G AK + + LD
Sbjct: 148 LNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDC 183
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA);
glycosyltransferase, transferase; 1.50A {Bacillus
subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A*
1qgs_A*
Length = 255
Score = 29.3 bits (66), Expect = 0.17
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 8/43 (18%)
Query: 16 PKVRLIRLK--------ERAGLIRARIAGAENAKGDVLMFLDS 50
+VR + E+ E A+G+ + +
Sbjct: 55 NRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATD 97
Score = 29.3 bits (66), Expect = 0.17
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 8/43 (18%)
Query: 68 PKVRLIRLK--------ERAGLIRARIAGAENAKGDVLMFLDS 102
+VR + E+ E A+G+ + +
Sbjct: 55 NRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATD 97
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon,
glycosyl transferase, rossmann F sulphur SAD,
transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Length = 249
Score = 28.1 bits (62), Expect = 0.59
Identities = 8/63 (12%), Positives = 15/63 (23%), Gaps = 5/63 (7%)
Query: 53 ELQGKLDYYIQTRLPPK---VRLIRLKERAGLIRARI--AGAENAKGDVLMFLDSHCELG 107
+ L+ + + P +E KG ++F EL
Sbjct: 29 KYDRLLESFERFGFTPDKAEFLAADNREGNQFHGFSWHKQMLPRCKGRYVIFCHEDVELV 88
Query: 108 TNW 110
Sbjct: 89 DRG 91
>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase,
S-adenosyl-methionin adenosyl-homocysteine, rRNA
processing; HET: MSE SAH; 2.15A {Methanocaldococcus
jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A*
Length = 205
Score = 25.3 bits (55), Expect = 4.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 45 LMFLDSHYELQGKLDYYIQT------RLPPKVRLIRLKER-AGLI 82
L LDS + KL+ YI T ++ P+ RL R R G++
Sbjct: 63 LNILDSPINHEKKLNIYIHTYDDKVLKINPETRLPRNYFRFLGVM 107
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome
biogenesis, methyltransferase, processing, ribosomal
protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB:
3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Length = 253
Score = 25.3 bits (55), Expect = 5.1
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 13 RLPPKVRLIRLKERAGLIRARIAGAENAKGDV-----LMFLDSHYELQGKLDYYIQT--- 64
K L+ + GL++ A+ D+ L LDS GKL YIQT
Sbjct: 61 PGGDKYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRG 120
Query: 65 ---RLPPKVRLIRLKER-AGLI 82
+ P VR+ R +R +GL+
Sbjct: 121 ILIEVNPTVRIPRTFKRFSGLM 142
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene
therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 25.1 bits (54), Expect = 5.3
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 45 LMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERA 79
++ + + LP + RL +R
Sbjct: 142 VLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQ 176
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 25.2 bits (54), Expect = 5.5
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 45 LMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERA 79
++ + + LP + RL +R
Sbjct: 187 VLAFVALIPPTLPGTNIVLGALPEDRHIDRLAKRQ 221
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.142 0.417
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,761,916
Number of extensions: 101408
Number of successful extensions: 244
Number of sequences better than 10.0: 1
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 28
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.1 bits)