RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5323
         (110 letters)



>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
           {Rhodothermus marinus [TaxId: 29549]}
          Length = 381

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 8/48 (16%), Positives = 18/48 (37%)

Query: 58  LDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCE 105
               +  RL  ++  +R  +  G+  A     E  + + + F D+   
Sbjct: 56  TGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADIT 103



 Score = 32.6 bits (74), Expect = 0.006
 Identities = 8/46 (17%), Positives = 18/46 (39%)

Query: 6   LDYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSH 51
               +  RL  ++  +R  +  G+  A     E  + + + F D+ 
Sbjct: 56  TGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDAD 101


>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase
           (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 265

 Score = 30.4 bits (67), Expect = 0.031
 Identities = 6/52 (11%), Positives = 19/52 (36%)

Query: 59  DYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHCELGTNW 110
           +    +  P  + +I   + A  +R R+      + + ++ +D    +    
Sbjct: 47  EELWNSLGPHPIPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQD 98



 Score = 27.3 bits (59), Expect = 0.40
 Identities = 6/48 (12%), Positives = 19/48 (39%)

Query: 7  DYYIQTRLPPKVRLIRLKERAGLIRARIAGAENAKGDVLMFLDSHYEL 54
          +    +  P  + +I   + A  +R R+      + + ++ +D    +
Sbjct: 47 EELWNSLGPHPIPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLI 94


>d1hi9a_ c.99.1.1 (A:) Zn-dependent D-aminopeptidase DppA {Bacillus
           subtilis [TaxId: 1423]}
          Length = 274

 Score = 28.6 bits (64), Expect = 0.11
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 30  IRARIAGAENAKGDVLMFLDSHYELQGKLDYYIQTRLPPKVRLIRLKERAGLIRARIAGA 89
               IA A N+    ++  DSH     K++  +  +L P+  LI    +     + + G 
Sbjct: 39  ANYCIAEAFNSGCTEVLVNDSH----SKMNNLMVEKLHPEADLISGDVKP---FSMVEGL 91

Query: 90  ENAKGDVLMFLDSHCELGTN 109
           ++      +FL  H    T 
Sbjct: 92  DDT-FRGALFLGYHARASTP 110


>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1
           {Methanococcus jannaschii [TaxId: 2190]}
          Length = 204

 Score = 25.9 bits (57), Expect = 0.91
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 7/45 (15%)

Query: 45  LMFLDSHYELQGKLDYYIQTR------LPPKVRLIRLKER-AGLI 82
           L  LDS    + KL+ YI T       + P+ RL R   R  G++
Sbjct: 62  LNILDSPINHEKKLNIYIHTYDDKVLKINPETRLPRNYFRFLGVM 106


>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 227

 Score = 24.8 bits (54), Expect = 2.6
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 7/45 (15%)

Query: 45  LMFLDSHYELQGKLDYYIQTR------LPPKVRLIR-LKERAGLI 82
           L  LDS     GKL  YIQT       + P VR+ R  K  +GL+
Sbjct: 73  LTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLM 117


>d1v4aa2 d.218.1.9 (A:2-286) Glutamine synthase adenylyltransferase
           GlnE, N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 285

 Score = 24.3 bits (52), Expect = 3.8
 Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 1/23 (4%)

Query: 25  ERAGLIRAR-IAGAENAKGDVLM 46
           ER  +++AR +  +E    + L 
Sbjct: 253 ERYAMVKARIMGDSEGVYANELR 275



 Score = 24.3 bits (52), Expect = 3.8
 Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 1/23 (4%)

Query: 77  ERAGLIRAR-IAGAENAKGDVLM 98
           ER  +++AR +  +E    + L 
Sbjct: 253 ERYAMVKARIMGDSEGVYANELR 275


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 412,187
Number of extensions: 17455
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 10
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)