BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5324
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
And Ea2
pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
Length = 501
Score = 142 bits (358), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 72/93 (77%), Gaps = 1/93 (1%)
Query: 1 MAGGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFRSHH 60
+AGGLF +D+ YF ELG YD M+VWGGENLEISFRVW CGGSLE +PCSR+GH+FR H
Sbjct: 236 IAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQH 295
Query: 61 PYTFPGGKDT-HGINTARLVEIWMDDYKRLFYA 92
PYTFPGG T NT R E+WMD+YK +YA
Sbjct: 296 PYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYA 328
>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
Acetylgalactosaminyltransferase-T1
Length = 472
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 69/92 (75%), Gaps = 1/92 (1%)
Query: 1 MAGGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFRSHH 60
MAGGLF++DR YF E+G+YD M++WGGENLEISFR+W CGG+LE V CS +GH+FR
Sbjct: 204 MAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKAT 263
Query: 61 PYTFPGGK-DTHGINTARLVEIWMDDYKRLFY 91
PYTFPGG N RL E+WMD++K FY
Sbjct: 264 PYTFPGGTGQIINKNNRRLAEVWMDEFKNFFY 295
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Query: 1 MAGGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFRSHH 60
MAGGLFAVDRK+F+ELG YD +E+WGGE EISF+VWMCGG +E +PCSR+GHI+R +
Sbjct: 284 MAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYV 343
Query: 61 PYTFPGGKDTHGINTARLVEIWMDDYKRLFYAHR 94
PY P G + N R+ E+WMD+Y Y R
Sbjct: 344 PYKVPAGV-SLARNLKRVAEVWMDEYAEYIYQRR 376
>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|C Chain C, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|D Chain D, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
Length = 625
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 1 MAGGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCG 41
+GG A +K+ F G +D++ WGGE+ E +R++ G
Sbjct: 276 FSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREG 316
>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
pdb|2Z87|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
Length = 624
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 1 MAGGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCG 41
+GG A +K+ F G +D++ WGGE+ E +R++ G
Sbjct: 275 FSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREG 315
>pdb|1PTO|A Chain A, The Structure Of A Pertussis Toxin-Sugar Complex As A
Model For Receptor Binding
pdb|1PTO|G Chain G, The Structure Of A Pertussis Toxin-Sugar Complex As A
Model For Receptor Binding
Length = 244
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 52 IGHIFRSHHPYTFPGGK-------DTHGINTARLVEIWMDDYKRLFYAHRRDLVDKIR 102
IG+I+ F G DT+G N R++ + Y+ + AHRR + IR
Sbjct: 94 IGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATYQSEYLAHRRIPPENIR 151
>pdb|1PRT|A Chain A, The Crystal Structure Of Pertussis Toxin
pdb|1PRT|G Chain G, The Crystal Structure Of Pertussis Toxin
Length = 234
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 52 IGHIFRSHHPYTFPGGK-------DTHGINTARLVEIWMDDYKRLFYAHRRDLVDKIR 102
IG+I+ F G DT+G N R++ + Y+ + AHRR + IR
Sbjct: 84 IGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATYQSEYLAHRRIPPENIR 141
>pdb|1BCP|A Chain A, Binary Complex Of Pertussis Toxin And Atp
pdb|1BCP|G Chain G, Binary Complex Of Pertussis Toxin And Atp
Length = 235
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 52 IGHIFRSHHPYTFPGGK-------DTHGINTARLVEIWMDDYKRLFYAHRRDLVDKIR 102
IG+I+ F G DT+G N R++ + Y+ + AHRR + IR
Sbjct: 85 IGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATYQSEYLAHRRIPPENIR 142
>pdb|1NHE|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp
pdb|1NHE|D Chain D, Crystal Structure Of Lactose Synthase Complex With Udp
Length = 286
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 3 GGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSL 44
GG+ A+ ++ F + + WGGE+ +I R+ G S+
Sbjct: 175 GGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGXSV 216
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 16 LGSYDQQMEVWGGEN-LEISFRVWMCGGSLECVPCSRIGHIFR 57
+ SYDQ +V GG+ + I F CG PC IG +F
Sbjct: 20 ISSYDQFKQVTGGDKVVVIDFWATWCG------PCKMIGPVFE 56
>pdb|3MUU|A Chain A, Crystal Structure Of The Sindbis Virus E2-E1 Heterodimer
At Low Ph
pdb|3MUU|B Chain B, Crystal Structure Of The Sindbis Virus E2-E1 Heterodimer
At Low Ph
pdb|3MUU|C Chain C, Crystal Structure Of The Sindbis Virus E2-E1 Heterodimer
At Low Ph
pdb|3MUU|D Chain D, Crystal Structure Of The Sindbis Virus E2-E1 Heterodimer
At Low Ph
pdb|3MUU|E Chain E, Crystal Structure Of The Sindbis Virus E2-E1 Heterodimer
At Low Ph
pdb|3MUU|F Chain F, Crystal Structure Of The Sindbis Virus E2-E1 Heterodimer
At Low Ph
Length = 750
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 40 CGGSLECVPCSRIGH---IFRSHHPYTFPGGK 68
C GSLEC P + G+ +F +P+ + G +
Sbjct: 422 CCGSLECQPAAHAGYTCKVFGGVYPFXWGGAQ 453
>pdb|1FR8|A Chain A, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Uridine Diphosphogalactose
pdb|1FR8|B Chain B, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Uridine Diphosphogalactose
Length = 288
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 3 GGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLE 45
GG+ A+ ++ F + + WGGE+ +I R+ G S+
Sbjct: 177 GGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVS 219
>pdb|1FGX|A Chain A, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Ump
pdb|1FGX|B Chain B, Crystal Structure Of The Bovine Beta 1,4
Galactosyltransferase (B4galt1) Catalytic Domain
Complexed With Ump
Length = 288
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 3 GGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLE 45
GG+ A+ ++ F + + WGGE+ +I R+ G S+
Sbjct: 177 GGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVS 219
>pdb|2G8S|A Chain A, Crystal Structure Of The Soluble Aldose Sugar
Dehydrogenase (Asd) From Escherichia Coli In The
Apo-Form
pdb|2G8S|B Chain B, Crystal Structure Of The Soluble Aldose Sugar
Dehydrogenase (Asd) From Escherichia Coli In The
Apo-Form
Length = 353
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 106 ESNPRPSAYKADALPTKLTRLT 127
E+N RP+A D L KL RLT
Sbjct: 149 ENNQRPTAQDLDKLQGKLVRLT 170
>pdb|2FYD|B Chain B, Catalytic Domain Of Bovine Beta 1, 4-Galactosyltransferase
In Complex With Alpha-Lactalbumin, Glucose, Mn, And
Udp-N- Acetylgalactosamine
pdb|2FYD|D Chain D, Catalytic Domain Of Bovine Beta 1, 4-Galactosyltransferase
In Complex With Alpha-Lactalbumin, Glucose, Mn, And
Udp-N- Acetylgalactosamine
Length = 286
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 3 GGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLE 45
GG+ A+ ++ F + + WGGE+ +I R+ G S+
Sbjct: 175 GGVSALSKQQFLSINGFPNNYCGWGGEDDDIYNRLAFRGMSVS 217
>pdb|2AE7|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AE7|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AE7|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|2AEC|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man- Beta-Or
pdb|2AEC|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man- Beta-Or
pdb|2AEC|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,6-Man- Beta-Or
pdb|2AES|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man- Beta-Or
pdb|2AES|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man- Beta-Or
pdb|2AES|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,2-Man-Alpha1,3-Man- Beta-Or
pdb|2AGD|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man- Beta-Or
pdb|2AGD|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man- Beta-Or
pdb|2AGD|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase- I(M340h-B4gal-T1)
In Complex With Glcnac-Beta1,4-Man-Alpha1,3-Man- Beta-Or
pdb|2AH9|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2AH9|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2AH9|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Chitotriose
pdb|2FY7|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1,4-galactosyltransferase Mutant M339h In Apo Form
pdb|2FYA|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1, 4-Galactosyltransferase Mutant M339h Complex With
Manganese
pdb|2FYB|A Chain A, Crystal Structure Of The Catalytic Domain Of The Human
Beta1,4-Galactosyltransferase Mutant M339h In Complex
With Mn And Udp-Galactose In Open Conformation
pdb|3EE5|A Chain A, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|3EE5|B Chain B, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|3EE5|C Chain C, Crystal Structure Of Human
M340h-Beta1,4-Galactosyltransferase-I (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,3-Gal-Beta-
Naphthalenemethanol
pdb|4EE3|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE3|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE3|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Pentasaccharide
pdb|4EE4|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE4|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE4|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Tetrasaccharide From Lacto-N- Neohexose
pdb|4EE5|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EE5|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EE5|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Trisaccharide From Lacto-N- Neotetraose
pdb|4EEA|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEA|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEA|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta1,4-Glc-Beta
pdb|4EEG|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEG|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEG|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Gal-Beta
pdb|4EEM|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEM|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEM|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Man-Alpha-Methyl
pdb|4EEO|A Chain A, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
pdb|4EEO|B Chain B, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
pdb|4EEO|C Chain C, Crystal Structure Of Human
M340h-Beta-1,4-Galactosyltransferase-1 (M340h-B4gal-T1)
In Complex With Glcnac-Beta1,6-Glcnac-Alpha-Benzyl
Length = 287
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 3 GGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLE 45
GG+ A+ ++ F + + WGGE+ +I R+ G S+
Sbjct: 176 GGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSIS 218
>pdb|1TVY|A Chain A, Beta-1,4-Galactosyltransferase Mutant Met344his
(M344h-Gal- T1) Complex With Udp-Galactose And Manganese
pdb|1TVY|B Chain B, Beta-1,4-Galactosyltransferase Mutant Met344his
(M344h-Gal- T1) Complex With Udp-Galactose And Manganese
pdb|1TW1|A Chain A, Beta-1,4-galactosyltransferase Mutant Met344his
(m344h-gal- T1) Complex With Udp-galactose And Magnesium
pdb|1TW1|B Chain B, Beta-1,4-galactosyltransferase Mutant Met344his
(m344h-gal- T1) Complex With Udp-galactose And Magnesium
pdb|1TW5|A Chain A, Beta1,4-Galactosyltransferase Mutant M344h-Gal-T1 In
Complex With Chitobiose
pdb|1TW5|B Chain B, Beta1,4-Galactosyltransferase Mutant M344h-Gal-T1 In
Complex With Chitobiose
pdb|2FYC|B Chain B, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
pdb|2FYC|D Chain D, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase-I In Complex With
Alpha-Lactalbumin, Ca And Udp-Galactose
Length = 286
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 3 GGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSL 44
GG+ A+ ++ F + + WGGE+ +I R+ G S+
Sbjct: 175 GGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSV 216
>pdb|1NF5|B Chain B, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NF5|D Chain D, Crystal Structure Of Lactose Synthase, Complex With
Glucose
pdb|1NKH|B Chain B, Crystal Structure Of Lactose Synthase Complex With Udp And
Manganese
pdb|1NKH|D Chain D, Crystal Structure Of Lactose Synthase Complex With Udp And
Manganese
pdb|1NQI|B Chain B, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NQI|D Chain D, Crystal Structure Of Lactose Synthase, A 1:1 Complex
Between Beta1,4- Galactosyltransferase And
Alpha-Lactalbumin In The Presence Of Glcnac
pdb|1NWG|B Chain B, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1NWG|D Chain D, Beta-1,4-Galactosyltransferase Complex With Alpha-
Lactalbumin And N-Butanoyl-Glucoamine
pdb|1O23|B Chain B, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1O23|D Chain D, Crystal Structure Of Lactose Synthase In The Presence Of
Udp-glucose
pdb|1OQM|B Chain B, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
pdb|1OQM|D Chain D, A 1:1 Complex Between Alpha-Lactalbumin And Beta1,4-
Galactosyltransferase In The Presence Of Udp-N-Acetyl-
Galactosamine
Length = 286
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 3 GGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLE 45
GG+ A+ ++ F + + WGGE+ +I R+ G S+
Sbjct: 175 GGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSVS 217
>pdb|1NMM|B Chain B, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1NMM|D Chain D, Beta-1,4-Galactosyltransferase Mutant Cys342thr Complex
With Alpha- Lactalbumin And Glcnac
pdb|1O0R|A Chain A, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase Complex With
Udp-Galactose
pdb|1O0R|B Chain B, Crystal Structure Of The Catalytic Domain Of Bovine
Beta1,4- Galactosyltransferase Complex With
Udp-Galactose
Length = 286
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 3 GGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSL 44
GG+ A+ ++ F + + WGGE+ +I R+ G S+
Sbjct: 175 GGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSV 216
>pdb|1EJ6|D Chain D, Reovirus Core
pdb|1EJ6|E Chain E, Reovirus Core
pdb|2CSE|X Chain X, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Y Chain Y, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Z Chain Z, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 418
Score = 25.8 bits (55), Expect = 7.5, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 9 DRKYFFELGSYDQQMEVWGGENLEISFRVWMC---GGSLECVPCSRIGHIFRSHHPYTFP 65
+R F S D M+V NL +S + C G L + + + + R+ H +T
Sbjct: 267 NRSLFVMPTSPDWNMDV----NLILSSTLTGCLCSGSQLPLIDNNSVPAVSRNIHGWTGR 322
Query: 66 GGKDTHGINTARLVEIWMDDYKR 88
G HG R+V + D +R
Sbjct: 323 AGNQLHGFQVRRMVTEFCDRLRR 345
>pdb|1YRO|B Chain B, Crystal Structure Of Beta14,-Galactosyltransferase Mutant
Arg228lys In Complex With Alpha-Lactalbumin In The
Presence Of Udp-Galactose And Mn
pdb|1YRO|D Chain D, Crystal Structure Of Beta14,-Galactosyltransferase Mutant
Arg228lys In Complex With Alpha-Lactalbumin In The
Presence Of Udp-Galactose And Mn
Length = 286
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 3 GGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSL 44
GG+ A+ ++ F + + WGGE+ +I R+ G S+
Sbjct: 175 GGVSALSKQQFLSINGFPNNYWGWGGEDDDIYNRLAFRGMSV 216
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.459
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,406,199
Number of Sequences: 62578
Number of extensions: 171422
Number of successful extensions: 434
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 23
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)