RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5324
(131 letters)
>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
mucin-type O-linked glycans. UDP-GalNAc: polypeptide
alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
initiate the formation of mucin-type, O-linked glycans
by catalyzing the transfer of
alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
hydroxyl groups of Ser or Thr residues of core proteins
to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
enzymes are type II membrane proteins with a GT-A type
catalytic domain and a lectin domain located on the
lumen side of the Golgi apparatus. In human, there are
15 isozymes of pp-GalNAc-Ts, representing the largest of
all glycosyltransferase families. Each isozyme has
unique but partially redundant substrate specificity for
glycosylation sites on acceptor proteins.
Length = 299
Score = 192 bits (491), Expect = 2e-62
Identities = 62/98 (63%), Positives = 76/98 (77%), Gaps = 1/98 (1%)
Query: 1 MAGGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFRS-H 59
MAGGLFA+DR++F ELG YD+ M++WGGENLE+SF+VW CGGS+E VPCSR+GHIFR
Sbjct: 171 MAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFRRKR 230
Query: 60 HPYTFPGGKDTHGINTARLVEIWMDDYKRLFYAHRRDL 97
PYTFPGG T N R+ E+WMD+YK FY R +L
Sbjct: 231 KPYTFPGGSGTVLRNYKRVAEVWMDEYKEYFYKARPEL 268
>gnl|CDD|217196 pfam02709, Glyco_transf_7C, N-terminal domain of
galactosyltransferase. This is the N-terminal domain
of a family of galactosyltransferases from a wide range
of Metazoa with three related galactosyltransferases
activities, all three of which are possessed by one
sequence in some cases. EC:2.4.1.90,
N-acetyllactosamine synthase; EC:2.4.1.38,
Beta-N-acetylglucosaminyl-glycopeptide beta-1,4-
galactosyltransferase; and EC:2.4.1.22 Lactose
synthase. Note that N-acetyllactosamine synthase is a
component of Lactose synthase along with
alpha-lactalbumin, in the absence of alpha-lactalbumin
EC:2.4.1.90 is the catalyzed reaction.
Length = 78
Score = 34.1 bits (79), Expect = 0.003
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 2 AGGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIG-HIFR 57
GG+ A ++ F ++ + WGGE+ ++ R+ + G +E + H+ R
Sbjct: 20 FGGVLAFSKEDFLKVNGFSNNFWGWGGEDDDLYARLLLAGLKIERPKFAIGRYHMLR 76
>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 278
Score = 32.8 bits (75), Expect = 0.031
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 1 MAGGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRV 37
+A ++R +F ++G +D+ GGE+ E+ +R+
Sbjct: 165 LASSCILINRDFFLKIGGFDENFRGHGGEDFELLYRL 201
>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 166
Score = 31.4 bits (72), Expect = 0.076
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 3 GGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGH 54
G V R+ F E+G +D+ ++ E++++ R + G + VP + I H
Sbjct: 114 GAFLLVRREVFEEVGGFDEDFFLYY-EDVDLCLRARLAGYRVLYVPQAVIYH 164
>gnl|CDD|224030 COG1105, FruK, Fructose-1-phosphate kinase and related
fructose-6-phosphate kinase (PfkB) [Carbohydrate
transport and metabolism].
Length = 310
Score = 31.8 bits (73), Expect = 0.079
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 51 RIGHIFRSHHPYTFPGGKDTHGINTARLVEIWMDDYKRLFYA 92
+G + R GGK GIN AR+++ L +
Sbjct: 21 ELGEVNRVRAVTKTAGGK---GINVARVLKDLGIPVTALGFL 59
>gnl|CDD|238570 cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor
6-phosphofructokinase (pfkB) and related sugar kinases.
FruK plays an important role in the predominant pathway
for fructose utilisation.This group also contains
tagatose-6-phophate kinase, an enzyme of the tagatose
6-phosphate pathway, which responsible for breakdown of
the galactose moiety during lactose metabolism by
bacteria such as L. lactis.
Length = 289
Score = 31.0 bits (71), Expect = 0.15
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 53 GHIFRSHHPYTFPGGKDTHGINTAR 77
G + R GGK GIN AR
Sbjct: 23 GEVNRVSSTRKDAGGK---GINVAR 44
>gnl|CDD|234133 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family.
This family consists largely of 1-phosphofructokinases,
but also includes tagatose-6-kinases and
6-phosphofructokinases.
Length = 303
Score = 30.2 bits (69), Expect = 0.27
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 51 RIGHIFRSHHPYTFPGGKDTHGINTAR 77
G + R GGK GIN AR
Sbjct: 20 TPGEVNRVAAVRKDAGGK---GINVAR 43
>gnl|CDD|133042 cd06420, GT2_Chondriotin_Pol_N, N-terminal domain of Chondroitin
polymerase functions as a GalNAc transferase.
Chondroitin polymerase is a two domain, bi-functional
protein. The N-terminal domain functions as a GalNAc
transferase. The bacterial chondroitin polymerase
catalyzes elongation of the chondroitin chain by
alternatively transferring the GlcUA and GalNAc moiety
from UDP-GlcUA and UDP-GalNAc to the non-reducing ends
of the chondroitin chain. The enzyme consists of
N-terminal and C-terminal domains in which the two
active sites catalyze the addition of GalNAc and GlcUA,
respectively. Chondroitin chains range from 40 to over
100 repeating units of the disaccharide. Sulfated
chondroitins are involved in the regulation of various
biological functions such as central nervous system
development, wound repair, infection, growth factor
signaling, and morphogenesis, in addition to its
conventional structural roles. In Caenorhabditis
elegans, chondroitin is an essential factor for the worm
to undergo cytokinesis and cell division. Chondroitin is
synthesized as proteoglycans, sulfated and secreted to
the cell surface or extracellular matrix.
Length = 182
Score = 29.5 bits (67), Expect = 0.40
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 12/56 (21%)
Query: 3 GGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFRS 58
G + +K + +D++ WGGE+ E+ R+ G FR
Sbjct: 128 GCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLL------------NSGIKFRK 171
>gnl|CDD|234419 TIGR03965, mycofact_glyco, mycofactocin system glycosyltransferase.
Members of this protein family are putative
glycosyltransferases, members of pfam00535 (glycosyl
transferase family 2). Members appear mostly in the
Actinobacteria, where they appear to be part of a system
for converting a precursor peptide (TIGR03969) into a
novel redox carrier designated mycofactocin. A radical
SAM enzyme, TIGR03962, is a proposed to be a key
maturase for mycofactocin.
Length = 467
Score = 28.6 bits (64), Expect = 0.87
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 7 AVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFR 57
V R+ E+G +D+++EV GE++++ +R+ GG + P + + H R
Sbjct: 235 LVRRRALLEVGGFDERLEV--GEDVDLCWRLCEAGGRVRYEPAAVVAHDHR 283
>gnl|CDD|234367 TIGR03828, pfkB, 1-phosphofructokinase. This enzyme acts in
concert with the fructose-specific phosphotransferase
system (PTS) which imports fructose as
fructose-1-phosphate. The action of
1-phosphofructokinase results in
beta-D-fructose-1,6-bisphosphate and is an entry point
into glycolysis (GenProp0688).
Length = 304
Score = 27.9 bits (63), Expect = 1.4
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 51 RIGHIFRSHHPYTFPGGKDTHGINTAR 77
+G + R GGK GIN +R
Sbjct: 20 TLGEVNRVESTRIDAGGK---GINVSR 43
>gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2.
Length = 605
Score = 27.1 bits (60), Expect = 3.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 59 HHPYTFPGGKDTHGINTARLVEIWMDDYKRLF 90
+ PYTF GG+ + NT RL+E ++ K F
Sbjct: 545 YEPYTFYGGRFDNS-NTQRLMERMSEEEKAEF 575
>gnl|CDD|237306 PRK13208, valS, valyl-tRNA synthetase; Reviewed.
Length = 800
Score = 26.7 bits (60), Expect = 4.2
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 21/56 (37%)
Query: 52 IGHIFRSHHPYT---------------FPGGKDTHGINTARLVE----IWMDDYKR 88
IGH+F + +T FP G D +G+ T R VE I DD R
Sbjct: 55 IGHVF--SYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISR 108
>gnl|CDD|216815 pfam01966, HD, HD domain. HD domains are metal dependent
phosphohydrolases.
Length = 111
Score = 25.3 bits (55), Expect = 7.5
Identities = 12/73 (16%), Positives = 17/73 (23%), Gaps = 5/73 (6%)
Query: 52 IGHIFRSHHPYTFPGGKDTHGINTARLVEIWM-----DDYKRLFYAHRRDLVDKIRPRRE 106
IG H + A ++ +D +L H P
Sbjct: 36 IGKPPFGDEKPLLFEIFLGHAVVGAEILRELEKPLGLEDVLKLILEHHESWEGAGYPEEI 95
Query: 107 SNPRPSAYKADAL 119
S AD L
Sbjct: 96 SLEARIVKLADRL 108
>gnl|CDD|237434 PRK13578, PRK13578, ornithine decarboxylase; Provisional.
Length = 720
Score = 26.1 bits (58), Expect = 8.2
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 16/51 (31%)
Query: 61 PYTFPGGKDTHGINTARLVEIWMDDYKRLFYAHRRDLVDKIRPRRESNPRP 111
P+ F GG D H + L R+ + ++ P R RP
Sbjct: 248 PFGFIGGIDAHCFDEEYL----------------REQIREVAPERADEARP 282
>gnl|CDD|220017 pfam08787, Alginate_lyase2, Alginate lyase. Alginate lyases are
enzymes that degrade the linear polysaccharide alignate.
They cleave the glycosidic linkage of alignate through a
beta-elimination reaction. This family forms an all beta
fold and is different to all alpha fold of pfam05426.
Length = 222
Score = 25.8 bits (57), Expect = 8.4
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 67 GKDTHGINTARLVEI-WMDDYKRLFYAHRRD 96
GKD+ G N L+++ + + L+ RR+
Sbjct: 106 GKDSSGNNNEPLLKLYYRHEKGSLYAYLRRN 136
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 25.5 bits (56), Expect = 8.4
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 37 VWMCGGSLECVPCSRI-GHIFRSHHPYT 63
++ P + I G IF + P T
Sbjct: 197 AFLTNSLRGVTPVTSIDGRIFGNPGPIT 224
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 25.7 bits (57), Expect = 8.5
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 46 CVPCSRIGHIFRSHHPYTFPGGKDTHGINTARLVEIW 82
C PCS I F G + + R +EIW
Sbjct: 168 CGPCSEI---FYDRGEEIGGGPPGSPDEDGDRYLEIW 201
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.459
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,845,802
Number of extensions: 591753
Number of successful extensions: 635
Number of sequences better than 10.0: 1
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 27
Length of query: 131
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 45
Effective length of database: 7,123,158
Effective search space: 320542110
Effective search space used: 320542110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.2 bits)