RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5324
(131 letters)
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 116 bits (291), Expect = 1e-31
Identities = 54/97 (55%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 1 MAGGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFRSHH 60
MAGGLFAVDRK+F+ELG YD +E+WGGE EISF+VWMCGG +E +PCSR+GHI+R +
Sbjct: 284 MAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYV 343
Query: 61 PYTFPGGKDTHGINTARLVEIWMDDYKRLFYAHRRDL 97
PY P G + N R+ E+WMD+Y Y R +
Sbjct: 344 PYKVPAG-VSLARNLKRVAEVWMDEYAEYIYQRRPEY 379
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 112 bits (282), Expect = 1e-30
Identities = 56/98 (57%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Query: 1 MAGGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFRSHH 60
MAGGLF++DR YF E+G+YD M++WGGENLEISFR+W CGG+LE V CS +GH+FR
Sbjct: 204 MAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKAT 263
Query: 61 PYTFPGG-KDTHGINTARLVEIWMDDYKRLFYAHRRDL 97
PYTFPGG N RL E+WMD++K FY +
Sbjct: 264 PYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGV 301
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 112 bits (280), Expect = 3e-30
Identities = 61/98 (62%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Query: 1 MAGGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFRSHH 60
+AGGLF +D+ YF ELG YD M+VWGGENLEISFRVW CGGSLE +PCSR+GH+FR H
Sbjct: 236 IAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQH 295
Query: 61 PYTFPGGK-DTHGINTARLVEIWMDDYKRLFYAHRRDL 97
PYTFPGG NT R E+WMD+YK +YA
Sbjct: 296 PYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSA 333
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 32.6 bits (74), Expect = 0.023
Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 3/94 (3%)
Query: 1 MAGGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFRSHH 60
+GG A +K+ F G +D++ WGGE+ E +R++ G V +
Sbjct: 276 FSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVE---GAMAYHQEP 332
Query: 61 PYTFPGGKDTHGINTARLVEIWMDDYKRLFYAHR 94
P G N + Y
Sbjct: 333 PGKENETDRAAGKNITVQLLQQKVPYFYRKKEKI 366
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 27.9 bits (63), Expect = 0.70
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 64 FPGGKDTHG--INTARLVEIWMDDYK--RLFYAHRRDLVDKIRP 103
FP + G I+ +E M + LF A+R + +++I+
Sbjct: 46 FPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNEIKS 89
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET:
PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A*
2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A*
1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B*
1nkh_B* 1nqi_B* 1nwg_B* ...
Length = 287
Score = 27.9 bits (61), Expect = 0.96
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 1 MAGGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFRSHH 60
GG+ A+ ++ F + + WGGE+ +I R+ G S+ P + +G H
Sbjct: 174 YFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSI-SRPNAVVGTTRHIRH 232
Query: 61 PY 62
Sbjct: 233 SR 234
>3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex,
glycosyltransferase; HET: UDP; 1.81A {Drosophila
melanogaster}
Length = 287
Score = 27.5 bits (60), Expect = 1.5
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 1 MAGGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFRSHH 60
GG+ V R++F ++ Q WG E+ E R+ G + + G H
Sbjct: 158 FVGGILLVRREHFKQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQNIKTGTNDTFSH 217
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide
biosynthesis, nucleotide-binding, transferase,
structural genomics, NPPSFA; HET: ADP TYD; 2.10A
{Thermotoga maritima} PDB: 3hjn_A*
Length = 197
Score = 26.7 bits (60), Expect = 1.7
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 89 LFYAHRRDLVDKIRP 103
LF A R LV +I+
Sbjct: 63 LFLASRNLLVTEIKQ 77
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 25.1 bits (55), Expect = 4.2
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 71 HGINTARLVEIWMDDYKRL---FYAHRRDLVDKIRPRRESNPRPSA 113
I+ +L+ I + + L H+ +++ + N PS+
Sbjct: 37 EKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNSGPSS 82
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 5.5
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 56 FRSHHPYTF-PGGKDTHGINTARLVE 80
F++ H F PGG G+ T R +
Sbjct: 496 FKATHILDFGPGGASGLGVLTHRNKD 521
>2yew_B E1 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 427
Score = 25.4 bits (55), Expect = 7.1
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 30 NLEISFRVWMCGGSLECVPCSRIGHI--FRSHHPYTFPG 66
++E +F V +C + C C I + + + FP
Sbjct: 352 SVEPNFVVQVCNARITCGKCEPPKDIVPYAAKNDAEFPS 390
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.459
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,137,458
Number of extensions: 118609
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 19
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (23.9 bits)