RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5324
         (131 letters)



>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
           N-acetylgalactosaminyltransferase 1, N-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score =  107 bits (268), Expect = 6e-30
 Identities = 56/98 (57%), Positives = 70/98 (71%), Gaps = 1/98 (1%)

Query: 1   MAGGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFRSHH 60
           MAGGLF++DR YF E+G+YD  M++WGGENLEISFR+W CGG+LE V CS +GH+FR   
Sbjct: 197 MAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKAT 256

Query: 61  PYTFPGG-KDTHGINTARLVEIWMDDYKRLFYAHRRDL 97
           PYTFPGG       N  RL E+WMD++K  FY     +
Sbjct: 257 PYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGV 294


>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
           {Rhodothermus marinus [TaxId: 29549]}
          Length = 381

 Score = 36.5 bits (84), Expect = 4e-04
 Identities = 12/142 (8%), Positives = 28/142 (19%), Gaps = 50/142 (35%)

Query: 3   GGLFAVDRKYFFEL-------GSYDQQMEVW-----------------GGENLEISFR-- 36
           GG   + R+    L          D  ++                           +   
Sbjct: 163 GGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIPEGKAHRLYGGL 222

Query: 37  -------------VWMCGGSLECVPCSRIGHIFRSHHPYTFPGG-KDTHGINTARLVEIW 82
                        +      +   P           HP+  P    +  G +    +   
Sbjct: 223 DDLRTMLVECFAAIQSLQHEVVGQPAIHRQ-----EHPHRVPVHIAERVGYDVEATLHRL 277

Query: 83  MDDYKRLFYAHRRDLVDKIRPR 104
           M  +       R+  + ++   
Sbjct: 278 MQHWTP-----RQVELLELFTT 294


>d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 271

 Score = 26.9 bits (59), Expect = 0.82
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 3   GGLFAVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFRSHH 60
           GG+ A+ ++ F  +  +       GGE+ +I  R+   G S+   P + IG      H
Sbjct: 160 GGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNRLAFRGMSVS-RPNAVIGKTRMIRH 216


>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD)
           {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 119

 Score = 23.8 bits (51), Expect = 5.2
 Identities = 11/95 (11%), Positives = 28/95 (29%), Gaps = 11/95 (11%)

Query: 7   AVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFRSHHPYTFPG 66
            +++ +    GS+++  E +      +    W      E +    +      H+      
Sbjct: 11  LINKFF----GSFEKFKEEFSQAAKNVEGVGWAILVY-EPLEEQLLILQIEKHNLMHAAD 65

Query: 67  GKDTHGINTARLVEIWMDDYKRLFYAHRRDLVDKI 101
            +          +++W   Y   +   R   VD  
Sbjct: 66  AQ------VLLALDVWEHAYYLQYKNDRGSYVDNW 94


>d3ygsp_ a.77.1.3 (P:) Procaspase 9 prodomain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 97

 Score = 23.3 bits (50), Expect = 6.4
 Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 83  MDD-YKRLFYAHRRDLVDKIRPRR 105
           MD+  +RL    R  LV++++  +
Sbjct: 2   MDEADRRLLRRCRLRLVEELQVDQ 25


>d2p4ka2 d.44.1.1 (A:84-198) Mn superoxide dismutase (MnSOD) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 115

 Score = 23.5 bits (50), Expect = 7.3
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 10/95 (10%)

Query: 7   AVDRKYFFELGSYDQQMEVWGGENLEISFRVWMCGGSLECVPCSRIGHIFRSHHPYTFPG 66
           A+ R +    GS+D+  E     ++ +    W   G  +     +I             G
Sbjct: 13  AIKRDF----GSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTG 68

Query: 67  GKDTHGINTARLVEIWMDDYKRLFYAHRRDLVDKI 101
                GI+       W   Y   +   R D +  I
Sbjct: 69  LIPLLGIDV------WEHAYYLQYKNVRPDYLKAI 97


>d1cy5a_ a.77.1.3 (A:) Apoptotic protease activating factor 1,
           APAF-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 93

 Score = 23.3 bits (50), Expect = 8.0
 Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 1/24 (4%)

Query: 83  MDD-YKRLFYAHRRDLVDKIRPRR 105
           MD   +     HR  L   I+   
Sbjct: 1   MDAKARNCLLQHREALEKDIKTSY 24


>d1e6ya2 d.58.31.2 (A:1002-1283) Alpha chain {Archaeon
           Methanosarcina barkeri [TaxId: 2208]}
          Length = 282

 Score = 23.8 bits (51), Expect = 9.1
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 63  TFPGGKDTHGINTARLVEIWMDDYKR 88
                 D H +N A + ++W DD +R
Sbjct: 92  IVCEPDDLHYVNNAAMQQMW-DDIRR 116


>d1hbna2 d.58.31.2 (A:2-269) Alpha chain {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 268

 Score = 23.7 bits (51), Expect = 10.0
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 63  TFPGGKDTHGINTARLVEIWMDDYKR 88
           T+  G D H +N A + ++W DD +R
Sbjct: 78  TYVEGDDLHFVNNAAMQQMW-DDIRR 102


>d1e6va2 d.58.31.2 (A:8-272) Alpha chain {Archaeon Methanopyrus
          kandleri [TaxId: 2320]}
          Length = 265

 Score = 23.7 bits (51), Expect = 10.0
 Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 63 TFPGGKDTHGINTARLVEIWMDDYKR 88
           F  G D   +N A + ++W DD +R
Sbjct: 75 VFVEGDDLTFVNNAAMQQMW-DDIRR 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.141    0.459 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 533,868
Number of extensions: 24153
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 12
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (22.5 bits)