BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5325
(379 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DWB|A Chain A, Structure Of Human Ece-1 Complexed With Phosphoramidon
Length = 670
Score = 148 bits (374), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 119/173 (68%), Gaps = 6/173 (3%)
Query: 114 VYAPKYLQQLTRLVKEYNSTTDGKIVLNNYLVWQTVKALTGYLSKAFRDAYKGLRKALFG 173
VY +YL+Q++ L+ +TTD + +LNNY++W V+ + +L + F+DA + + ++G
Sbjct: 269 VYDKEYLEQISTLI----NTTD-RCLLNNYMIWNLVRKTSSFLDQRFQDADEKFMEVMYG 323
Query: 174 SEGGEEP-WKFCVSDTNSVLGFALGAMYVREVFNGNSKPMAEDMINNIRQAFKKNLLSLK 232
++ P WKFCVSDT + LGFALG M+V+ F +SK +A ++I I++AF+++L +LK
Sbjct: 324 TKKTSLPRWKFCVSDTENNLGFALGPMFVKATFAEDSKSIATEIILEIKKAFEESLSTLK 383
Query: 233 WMDKETFQLAENKADAITDMIGFPNYIMDADKLDEKYAELEVKEDEYFRNNIR 285
WMD+ET + A+ KADAI +MIG+PN+IMD +LD+ + + D YF N +R
Sbjct: 384 WMDEETRKSAKEKADAIYNMIGYPNFIMDPKELDKVFNDYTAVPDLYFENAMR 436
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 319 TAATILSSLDPSVDPCDDFYQYACGSWIKSNPIPDGKASWSMFNILDLKNNFIVKNAL 376
++ILSS+DP+VDPC DF+ YACG WIK+NP+PDG + W F+ L N I+K+ L
Sbjct: 7 VTSSILSSMDPTVDPCHDFFSYACGGWIKANPVPDGHSRWGTFSNLWEHNQAIIKHLL 64
>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
Phosphoramidon
pdb|1R1H|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1I|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1R1J|A Chain A, Structural Analysis Of Neprilysin With Various Specific
And Potent Inhibitors
pdb|1Y8J|A Chain A, Crystal Structure Of Human Nep Complexed With An
Imidazo[4,5- C]pyridine Inhibitor
pdb|2QPJ|A Chain A, Human Nep Complexed With A Bifunctional NepDPP IV
INHIBITOR
pdb|2YB9|A Chain A, Crystal Structure Of Human Neutral Endopeptidase Complexed
With A Heteroarylalanine Diacid
Length = 696
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 110/192 (57%), Gaps = 6/192 (3%)
Query: 114 VYAPKYLQQLTRLVKEYNSTTDGKIVLNNYLVWQTVKALTGYLSKAFRDAYKGLRKALFG 173
VYAP+YL +L ++ +Y++ L N + W+ + L LS+ ++++ RKAL+G
Sbjct: 292 VYAPEYLTKLKPILTKYSARD-----LQNLMSWRFIMDLVSSLSRTYKESRNAFRKALYG 346
Query: 174 SEGGEEPWKFCVSDTNSVLGFALGAMYVREVFNGNSKPMAEDMINNIRQAFKKNLLSLKW 233
+ W+ C + N + A+G +YV F G SK + ED+I IR+ F + L L W
Sbjct: 347 TTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTW 406
Query: 234 MDKETFQLAENKADAITDMIGFPNYIMDAD-KLDEKYAELEVKEDEYFRNNIRAGMHSLK 292
MD ET + AE KA AI + IG+P+ I+ D KL+ +Y EL KEDEYF N I+ S
Sbjct: 407 MDAETKKRAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKFSQS 466
Query: 293 NLLRKLDQPVNK 304
L+KL + V+K
Sbjct: 467 KQLKKLREKVDK 478
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 41/61 (67%)
Query: 318 ETAATILSSLDPSVDPCDDFYQYACGSWIKSNPIPDGKASWSMFNILDLKNNFIVKNALG 377
++AA ++ ++D + +PC DF++YACG W+K N IP+ + + F+IL + ++K+ L
Sbjct: 10 KSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQ 69
Query: 378 E 378
E
Sbjct: 70 E 70
>pdb|3ZUK|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
pdb|3ZUK|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Zinc
Metalloprotease Zmp1 In Complex With Inhibitor
Length = 699
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 146 WQTVKALTGYLSKAF-RDAYKGLRKALFGSEGGEEPWKFCVSDTNSVLGFALGAMYVREV 204
W+ ++A +L++A + ++ + L G++ + WK VS +++G A+G +YV+
Sbjct: 325 WRLIRARAPWLTRALVAEDFEFYGRTLTGAQQLRDRWKRGVSLVENLMGDAVGKLYVQRH 384
Query: 205 FNGNSKPMAEDMINNIRQAFKKNLLSLKWMDKETFQLAENKADAITDMIGFPNYIMDADK 264
F ++K + +++N+++A++ ++ L WM +T Q A K + T +G+P D
Sbjct: 385 FPPDAKSRIDTLVDNLQEAYRISISELDWMTPQTRQRALAKLNKFTAKVGYPIKWRD--- 441
Query: 265 LDEKYAELEVKEDEYFRNNIRAGMHSLKNLLRKLDQPVNK 304
Y++L + D+ + N R + L KL PV++
Sbjct: 442 ----YSKLAIDRDDLYGNVQRGYAVNHDRELAKLFGPVDR 477
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 324 LSSLDPSVDPCDDFYQYACGSWIKSNPIPDGKASWSMFNIL 364
LS +D P DD + + G W+ + IP +A+ F L
Sbjct: 47 LSHIDADARPQDDLFGHVNGRWLAEHEIPADRATDGAFRSL 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,020,670
Number of Sequences: 62578
Number of extensions: 438304
Number of successful extensions: 910
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 7
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)