Query psy5325
Match_columns 379
No_of_seqs 271 out of 1936
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 23:44:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3590 PepO Predicted metallo 100.0 2.3E-60 5.1E-65 463.5 23.0 327 8-360 137-504 (654)
2 KOG3624|consensus 100.0 8.9E-37 1.9E-41 322.9 22.5 308 8-360 185-535 (687)
3 PF05649 Peptidase_M13_N: Pept 100.0 2.8E-35 6.1E-40 290.6 20.0 229 8-256 127-390 (390)
4 COG3590 PepO Predicted metallo 98.8 2.9E-09 6.2E-14 106.1 4.2 56 324-379 11-66 (654)
5 KOG3624|consensus 98.4 2.4E-07 5.1E-12 98.9 4.6 61 317-378 46-106 (687)
6 PF01431 Peptidase_M13: Peptid 90.0 0.045 9.7E-07 49.4 -2.0 50 313-362 1-55 (206)
7 KOG0718|consensus 30.5 80 0.0017 32.1 4.7 66 198-272 35-106 (546)
8 PF13069 DUF3933: Protein of u 28.6 46 0.001 22.2 1.8 19 236-254 20-38 (53)
9 PF10835 DUF2573: Protein of u 26.9 2.2E+02 0.0047 21.6 5.3 63 157-223 5-72 (82)
10 PF10346 Con-6: Conidiation pr 23.8 1.9E+02 0.0042 18.4 3.9 30 220-250 6-35 (36)
11 COG4227 Antirestriction protei 21.3 75 0.0016 29.8 2.4 48 313-361 179-229 (316)
12 PF11867 DUF3387: Domain of un 20.8 2.6E+02 0.0056 27.1 6.3 48 210-258 266-314 (335)
No 1
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-60 Score=463.52 Aligned_cols=327 Identities=23% Similarity=0.347 Sum_probs=290.7
Q ss_pred cccCCCCCcccchhhhccc-cccCCccccCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCcch---h-----H
Q psy5325 8 HAELDEDTTSMGSAHITEG-ISTSATHIHYYPSTSFWKLRTLLEKCLIVLNCTLLSLVVLFGCLLGSTEK---I-----S 78 (379)
Q Consensus 8 ~~~~d~k~s~~~~~~~~q~-~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~~aY~~~~~~~~~llG~~~~---~-----~ 78 (379)
.|+||+|||+.|++|++|| || |||++||.+. .. ++++.+|+.++.+++.++|.++. . .
T Consensus 137 ~vspD~kds~~~v~~~sq~Glg--------LPD~~YY~de-~~----~e~l~ay~~hv~rml~~~~~~~~~~d~a~~A~~ 203 (654)
T COG3590 137 SVSPDFKDSTRYVLYFSQSGLG--------LPDTTYYRDE-QH----AELLAAYKEHVARMLGLFGFSEEEEDAAKHALR 203 (654)
T ss_pred eeccccccchhheeeeccCCCC--------CCchhhhhhh-hH----HHHHHHHHHHHHHHHHHhCCchhhhhHHHHHHH
Confidence 4899999999999999999 98 9999999886 33 34569999999999999998653 1 9
Q ss_pred HHHHHHhhh-----------hhhhhHH--HHH-----------HHhcCCCCCCCCCcEEecChHHHHHHHHHHhcccCCC
Q psy5325 79 TTDFSKKKK-----------KKNIKHQ--FLE-----------AAHSAGEMPHRSQLHPVYAPKYLQQLTRLVKEYNSTT 134 (379)
Q Consensus 79 v~~fE~~LA-----------~~~~y~~--~l~-----------~~~~~~~~~~~~~~V~V~~p~Yl~~l~~ll~~~~~~~ 134 (379)
|+.||++|| ....||+ |-+ .++. -++.-++..|++.+|.|++.+..++.+++...
T Consensus 204 v~a~et~lA~~~~~~~~~rd~~~~Yn~~tf~~l~~~~p~~~w~~~~~-~~G~~PD~~iv~~~p~y~~~~~~~~~e~~~~~ 282 (654)
T COG3590 204 VVALETKLANASWEVVKYRDLYHTYNPATFAELQPELPGDDWSLLFS-ALGQLPDKVIVVENPFYLKEFASLLAEENWAD 282 (654)
T ss_pred HHHHHHHHhhhhhHHHHHHhhhcCcChhhHHHhcccCCCccHHHHHH-HhcCCCCeeEeecCchHHHHHHHHHhcCcHHH
Confidence 999999999 1233444 110 1111 12223457888899999999999998877654
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhCHHHHHHHH-HHHHhhcCCCCCCchHhhHHHHHHHHHhhHhhhhhHhhccCCCchHHH
Q psy5325 135 DGKIVLNNYLVWQTVKALTGYLSKAFRDAYK-GLRKALFGSEGGEEPWKFCVSDTNSVLGFALGAMYVREVFNGNSKPMA 213 (379)
Q Consensus 135 ~~~~~l~nYl~w~~v~~~~~~L~~~~~~~~~-~f~~~l~G~~~~~~r~~~C~~~v~~~~~~~lg~lyv~~~f~~~~k~~v 213 (379)
++.|+.|++++..+|+|+++++...+ .|+++|+|+++..+||++.+.++++.||.++|.+||++||++++|.+|
T Consensus 283 -----wKawl~~~~~~~~ap~Lt~dl~~~~f~fy~r~LsG~~E~r~rwKr~~~l~~~~~geaiG~~Yv~~~Fpp~aKa~m 357 (654)
T COG3590 283 -----WKAWLRWKLIRAAAPYLTEDLVDEHFDFYGRTLSGQPEARDRWKRAVNLAERLFGEAIGLLYVKRYFPPEAKADM 357 (654)
T ss_pred -----HHHHHHHHHHhhcchhhhhHHHHhhhHHHhhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 99999999999999999999999999 568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHhhcccccccCcccCChhhHHHHhcccccCccchHHHHHHHHHHHHHH
Q psy5325 214 EDMINNIRQAFKKNLLSLKWMDKETFQLAENKADAITDMIGFPNYIMDADKLDEKYAELEVKEDEYFRNNIRAGMHSLKN 293 (379)
Q Consensus 214 ~~mv~~Ik~~f~~~L~~~~WMd~~Tk~~Al~Kl~~m~~~IGyPd~~~n~~~l~~~Y~~l~i~~~~yf~n~l~~~~~~~~~ 293 (379)
++||.+++++|+.||++++||+++||++|++||++++.+||||+.| .+|+.|+++.+|+++|+++..++...+
T Consensus 358 ~~lVa~l~~ayk~Ri~~ldWmtpeTrekAl~KL~~ft~kIGYP~~w-------r~y~kL~~~~~sl~~N~~r~~~~~~~~ 430 (654)
T COG3590 358 EELVANLIKAYKARISKLDWMTPETREKALEKLNKFTAKIGYPDPW-------RYYSKLEIKRDSLYGNVLRASAFNHAH 430 (654)
T ss_pred HHHHHHHHHHHHHHhhhccccCHHHHHHHHHHHhccccccCCCchh-------hhhhhhccCchhHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999987 789999999999999999999999999
Q ss_pred HHhhcCCCCCCCCCC--CCccccccchhhhhhccc---C-CCCCCc-hhhhhhhhccccccccCCCCCCCccch
Q psy5325 294 LLRKLDQPVNKTKSR--PASLPMFGSETAATILSS---L-DPSVDP-CDDFYQYACGSWIKSNPIPDGKASWSM 360 (379)
Q Consensus 294 ~~~~l~~pvd~~~w~--p~~VNA~Y~p~~N~I~~~---~-d~~~d~-~~df~~~~~~~w~~~~~i~~~~~~~~~ 360 (379)
.++++++||||++|. |++|||||+|..|.|++| | .|++|| +++--+|.--|-+++|||.|+....|+
T Consensus 431 ~l~K~~kPVDr~eW~M~pq~VNAYYnp~~N~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgFDdqGa 504 (654)
T COG3590 431 ELSKIGKPVDRDEWEMPPQTVNAYYNPQKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGFDDQGA 504 (654)
T ss_pred hHHHhCCCCchhhcCCCHHHhhhhcCCCCceEeeeHHhcCCCCCCCCcchhhcccCccceehhhhcccccCCcc
Confidence 999999999999999 899999999999999998 3 588997 788888888899999999998765554
No 2
>KOG3624|consensus
Probab=100.00 E-value=8.9e-37 Score=322.88 Aligned_cols=308 Identities=24% Similarity=0.371 Sum_probs=255.5
Q ss_pred cccCCCCCcccchhhhccc-cccCCccccCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCcchh------HHH
Q psy5325 8 HAELDEDTTSMGSAHITEG-ISTSATHIHYYPSTSFWKLRTLLEKCLIVLNCTLLSLVVLFGCLLGSTEKI------STT 80 (379)
Q Consensus 8 ~~~~d~k~s~~~~~~~~q~-~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~~aY~~~~~~~~~llG~~~~~------~v~ 80 (379)
.+.+|.++++ |+ ++ +|.+++|.......+. ..+|..++..++.++|.+++. .++
T Consensus 185 ~v~~~~~~~~-------~~~~~--------l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 245 (687)
T KOG3624|consen 185 EVALDYKNSS-------QPGLI--------LPSRSKYLATDSDSEK----LRAYLLLANELLQLLGLDSDEAEEYARLVI 245 (687)
T ss_pred EEecccccCc-------ccccC--------cchHhhhhccccHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3566777777 55 65 5666676665433233 378999999999999965431 999
Q ss_pred HHHHhhh----h-------hhhhHH-----------------HHHHHhcCCCCCCCCCcEEecChHHHHHHHHHHhcccC
Q psy5325 81 DFSKKKK----K-------KNIKHQ-----------------FLEAAHSAGEMPHRSQLHPVYAPKYLQQLTRLVKEYNS 132 (379)
Q Consensus 81 ~fE~~LA----~-------~~~y~~-----------------~l~~~~~~~~~~~~~~~V~V~~p~Yl~~l~~ll~~~~~ 132 (379)
+||++|+ + ...|+. ++..+. ..+.....|+|.+++|+.+|.++|.+|+
T Consensus 246 ~~e~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~y~~~l~~ii~~t~- 321 (687)
T KOG3624|consen 246 ELERQLANITKPDENRRELQALYNSVNLAELQKKFPSIDWKQLLRSVL---GEILPHNEVVVFNPDYLVNLSAIIQSTP- 321 (687)
T ss_pred HHHHHHHhccchhhhhhhHHHHcccccHHHHHHhcccccHHHHhhhhc---cccccCCceEEecHHHHHHHHHHHHhCC-
Confidence 9999999 1 123332 222222 1233334899999999999999997764
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHhhcCCCCCCchHhhHHHHHHHHHhhHhhhhhHhhccCCCchHH
Q psy5325 133 TTDGKIVLNNYLVWQTVKALTGYLSKAFRDAYKGLRKALFGSEGGEEPWKFCVSDTNSVLGFALGAMYVREVFNGNSKPM 212 (379)
Q Consensus 133 ~~~~~~~l~nYl~w~~v~~~~~~L~~~~~~~~~~f~~~l~G~~~~~~r~~~C~~~v~~~~~~~lg~lyv~~~f~~~~k~~ 212 (379)
+++|+|||+|+++..+.+.++...+ ||..|+..+...||.++|++|++.+|+++++..
T Consensus 322 ----~~~laNYl~~~~~~~~~~~~~~~~~------------------~~~~Cv~~~~~~~p~a~~~l~~r~~~~~~~~~~ 379 (687)
T KOG3624|consen 322 ----KRTLANYLIWRLLDDLLDLLPKPRK------------------RWADCVELVRTLLPLALGRLYVRNFFDKENKKE 379 (687)
T ss_pred ----HHHHHHHHHHHHHHHHhcccchhhH------------------HHHHHHHHHHHhhhhhhHHHHHHHhcChhHHHH
Confidence 6789999999999998885543321 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHhhcccccccCcccCChhhHHHHhcccccCccchHHHHHHHHHHHHH
Q psy5325 213 AEDMINNIRQAFKKNLLSLKWMDKETFQLAENKADAITDMIGFPNYIMDADKLDEKYAELEVKEDEYFRNNIRAGMHSLK 292 (379)
Q Consensus 213 v~~mv~~Ik~~f~~~L~~~~WMd~~Tk~~Al~Kl~~m~~~IGyPd~~~n~~~l~~~Y~~l~i~~~~yf~n~l~~~~~~~~ 292 (379)
|.+|++.||.+|+++|++++|||++||+.|++|+++|+.+||||++..++..|++.|.+|.++.++|+.|+..+.++...
T Consensus 380 ~~~m~~~lk~~f~~~l~~~~Wl~~~tr~~a~~K~~~m~~~ig~p~~~~~~~~ld~~y~~l~l~~~~~~~~l~~~~~~~~~ 459 (687)
T KOG3624|consen 380 VSEMIEDLKKAFEEMLQELDWLDEETRKSAIKKLNAMKKNIGYPDEFLPPGTLDKEYENLKLSLDDYDSNLEILLKLQRR 459 (687)
T ss_pred HHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHHHHcCCHHHhcCchhHHHHHhcccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999888
Q ss_pred HHHh-hcCCCCCCCCCC--CCccccccchhhhhhcccC----CCCCCc-hhhhhhhhccccccccCCCCCCCccch
Q psy5325 293 NLLR-KLDQPVNKTKSR--PASLPMFGSETAATILSSL----DPSVDP-CDDFYQYACGSWIKSNPIPDGKASWSM 360 (379)
Q Consensus 293 ~~~~-~l~~pvd~~~w~--p~~VNA~Y~p~~N~I~~~~----d~~~d~-~~df~~~~~~~w~~~~~i~~~~~~~~~ 360 (379)
.... .+..++++..|. |..|||||.|..|.|.+|. .|.+++ .+++..|+--|.+.+|+|.|+....|.
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~na~Y~~~~N~i~~pa~ilq~P~f~~~~P~~~nyg~iG~vigHEl~H~FD~~G~ 535 (687)
T KOG3624|consen 460 RSEQLELRAPVDPLDWVGSPAQVNAFYSPEKNEIVFPAGLLQPPFFDLSYPDYLNYGGIGFVIGHELTHGFDDQGR 535 (687)
T ss_pred HHHHHHHhcCCCccccccccceeeccccCCCceEEEehhcccCCCCCcccchhhhhHHHHHHHHHHHhhccccccc
Confidence 7777 688888899998 8999999999999999873 377775 578889999999999999998765553
No 3
>PF05649 Peptidase_M13_N: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR008753 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0008237 metallopeptidase activity, 0006508 proteolysis; PDB: 3DWB_A 3ZUK_A 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A.
Probab=100.00 E-value=2.8e-35 Score=290.57 Aligned_cols=229 Identities=28% Similarity=0.465 Sum_probs=184.8
Q ss_pred cccCCCCCcccchhhhccc-cccCCccccCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCcchh------HHH
Q psy5325 8 HAELDEDTTSMGSAHITEG-ISTSATHIHYYPSTSFWKLRTLLEKCLIVLNCTLLSLVVLFGCLLGSTEKI------STT 80 (379)
Q Consensus 8 ~~~~d~k~s~~~~~~~~q~-~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~~aY~~~~~~~~~llG~~~~~------~v~ 80 (379)
.|++|++|++.++++|++| ++ ||++.+|....... ....+|..+|..++..+|.+... +|+
T Consensus 127 ~v~~d~~~~~~~~l~i~~~~~~--------l~~~~~~~~~~~~~----~~~~~y~~~v~~~l~~~g~~~~~~~~~~~~i~ 194 (390)
T PF05649_consen 127 YVDPDPQNPSKYILYIDPPELG--------LPSKEYYRDPHSSK----EYLQAYREYVREVLKLLGVDDDEASKLADDIV 194 (390)
T ss_dssp EEEEETTEEEEEEEEEEE---S--------SSSGGGGCTCGGCH----HHHHHHHHHHHHHHHHCSS-HHHHHHHHHHHH
T ss_pred EeeccccchheeEeecccCCCC--------CcchHHhhcchhhH----HHHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Confidence 3778999999999999987 76 67777776643212 23488999999999999875431 999
Q ss_pred HHHHhhh-----------hhhhhHH-----------------HHHHHhcCCCCCCCCCcEEecChHHHHHHHHHHhcccC
Q psy5325 81 DFSKKKK-----------KKNIKHQ-----------------FLEAAHSAGEMPHRSQLHPVYAPKYLQQLTRLVKEYNS 132 (379)
Q Consensus 81 ~fE~~LA-----------~~~~y~~-----------------~l~~~~~~~~~~~~~~~V~V~~p~Yl~~l~~ll~~~~~ 132 (379)
+||++|+ +...|++ |++.++. .++.++.|+|.+|+||++|.+++++++
T Consensus 195 ~~e~~L~~~~~~~~~~~~~~~~~~~~tl~eL~~~~p~i~w~~~l~~~~~---~~~~~~~V~v~~~~y~~~l~~ll~~~~- 270 (390)
T PF05649_consen 195 KFEKQLAKLSSEDEERRDPQKLYNPMTLSELQSQYPQIDWDRYLKALFG---EVTESDEVIVRSPDYFKKLSELLKQTS- 270 (390)
T ss_dssp HHHHHHHHHS--GGGCT-HHHH-EEEEHHHHHHHSTTS-HHHHHHHHCC---CCCTTSEEEES-HHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHhhhhHhhccHHHhcCcccHHHHHHHHhhhhHHHHHHHHcc---ccCCCceEEEcCcHHHHHHHHHHHhCC-
Confidence 9999999 1112211 5666664 166778999999999999999998754
Q ss_pred CCccHHHHHHHHHHHHHHHHHhhhCHHHHHHHHHHHHhhcCCCCCCchHhhHHHHHHHHHhhHhhhhhHhhccCCCchHH
Q psy5325 133 TTDGKIVLNNYLVWQTVKALTGYLSKAFRDAYKGLRKALFGSEGGEEPWKFCVSDTNSVLGFALGAMYVREVFNGNSKPM 212 (379)
Q Consensus 133 ~~~~~~~l~nYl~w~~v~~~~~~L~~~~~~~~~~f~~~l~G~~~~~~r~~~C~~~v~~~~~~~lg~lyv~~~f~~~~k~~ 212 (379)
+++|+||++|+++.+++++++.+++.....|..++.|..+..+||..|+..+...||+++|++|++++|++++++.
T Consensus 271 ----~~~l~nYl~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~C~~~~~~~l~~~~~~~y~~~~~~~~~~~~ 346 (390)
T PF05649_consen 271 ----KETLANYLGWRLIRELSPYLSSELRDLYFEFYRTLSGVEESRPRWQRCVRHVEKLLPFALGRLYVRRYFDKENKKE 346 (390)
T ss_dssp ----HHHHHHHHHHHHHHHHGGGS-HHHHHHHHHHHTHHH--SS---HHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHH
T ss_pred ----cHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHhhHhhhcCchhHHHH
Confidence 6789999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHhhcccccccC
Q psy5325 213 AEDMINNIRQAFKKNLLSLKWMDKETFQLAENKADAITDMIGFP 256 (379)
Q Consensus 213 v~~mv~~Ik~~f~~~L~~~~WMd~~Tk~~Al~Kl~~m~~~IGyP 256 (379)
|++|+++||++|.++|++++|||++||+.|++||++|+.+||||
T Consensus 347 v~~~~~~ik~~f~~~i~~~~Wld~~tk~~a~~Kl~~m~~~iGyP 390 (390)
T PF05649_consen 347 VEDMVENIKEAFRERIEESDWLDEETKKEAIEKLNNMKLNIGYP 390 (390)
T ss_dssp HHHHHHHHHHHHHHHHCT-TTS-HHHHHHHHHHHHH-EEEEES-
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccCC
Confidence 99999999999999999999999999999999999999999999
No 4
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.9e-09 Score=106.07 Aligned_cols=56 Identities=30% Similarity=0.598 Sum_probs=52.8
Q ss_pred cccCCCCCCchhhhhhhhccccccccCCCCCCCccchHHHHHHHHHHHHHHHhhcC
Q psy5325 324 LSSLDPSVDPCDDFYQYACGSWIKSNPIPDGKASWSMFNILDLKNNFIVKNALGEW 379 (379)
Q Consensus 324 ~~~~d~~~d~~~df~~~~~~~w~~~~~i~~~~~~~~~f~~l~~~~~~~l~~~l~~~ 379 (379)
++.||++..||+|||.||||.|+..|+||+|++++|.|..|.+++++++|+|+++|
T Consensus 11 ~s~~d~~~rpqdDly~~vNG~Wl~~~~IPaDrsr~G~F~~L~d~~e~~~~~~i~~a 66 (654)
T COG3590 11 LSHMDAMTRPQDDLYGYVNGEWLKTAEIPADRSRDGAFDKLDDRAEALVRDIIEAA 66 (654)
T ss_pred hhcCCCcCCcchHHHHHhhhhhhhcCcCCCCccccccHHHHHHHHHHHHHHHHHHH
Confidence 34588999999999999999999999999999999999999999999999999875
No 5
>KOG3624|consensus
Probab=98.39 E-value=2.4e-07 Score=98.89 Aligned_cols=61 Identities=43% Similarity=0.759 Sum_probs=55.9
Q ss_pred chhhhhhcccCCCCCCchhhhhhhhccccccccCCCCCCCccchHHHHHHHHHHHHHHHhhc
Q psy5325 317 SETAATILSSLDPSVDPCDDFYQYACGSWIKSNPIPDGKASWSMFNILDLKNNFIVKNALGE 378 (379)
Q Consensus 317 ~p~~N~I~~~~d~~~d~~~df~~~~~~~w~~~~~i~~~~~~~~~f~~l~~~~~~~l~~~l~~ 378 (379)
...++.+...+|+++|||+|||+||||+|...|+++++. +++.|..+.+.+..+++++|++
T Consensus 46 ~~~a~~l~~~~d~svdPC~dFy~~ACG~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~ 106 (687)
T KOG3624|consen 46 VTLAHQLLNYMDTSVDPCEDFYQYACGNWAENHPIPKDK-RSSTLDELQDQVLRQLKELLEE 106 (687)
T ss_pred HHHHHHHHHcCCCCCCcchhHHHHHhCcHhhcCCCcccc-cccHHHHHHHHHHHHHHHHHhC
Confidence 445566777899999999999999999999999999999 9999999999999999999974
No 6
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=90.00 E-value=0.045 Score=49.38 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=37.9
Q ss_pred ccccchhhhhhcccC----CCCCCc-hhhhhhhhccccccccCCCCCCCccchHH
Q psy5325 313 PMFGSETAATILSSL----DPSVDP-CDDFYQYACGSWIKSNPIPDGKASWSMFN 362 (379)
Q Consensus 313 NA~Y~p~~N~I~~~~----d~~~d~-~~df~~~~~~~w~~~~~i~~~~~~~~~f~ 362 (379)
||||.|..|.|..|. .|.+++ .++.+.|+--|++.+|+|.+.....|...
T Consensus 1 na~Y~~~~N~i~ip~~~l~~P~f~~~~p~~~~yg~lG~ilahel~hafd~~g~~~ 55 (206)
T PF01431_consen 1 NAYYSPRFNSIVIPAGILQPPFFDPNYPPALNYGGLGFILAHELMHAFDPEGINY 55 (206)
T ss_dssp --EEETTTTEEEEEGGGSSTTT--TTS-HHHHHHTHHHHHHHHHHHCTSTTGGGB
T ss_pred CCCCCcccCEEEecHHHhCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 899999999999973 577776 68999999999999999988876666543
No 7
>KOG0718|consensus
Probab=30.50 E-value=80 Score=32.15 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=41.9
Q ss_pred hhhH-hhccCCCchHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHH-----hhcccccccCcccCChhhHHHHhcc
Q psy5325 198 AMYV-REVFNGNSKPMAEDMINNIRQAFKKNLLSLKWMDKETFQLAENKA-----DAITDMIGFPNYIMDADKLDEKYAE 271 (379)
Q Consensus 198 ~lyv-~~~f~~~~k~~v~~mv~~Ik~~f~~~L~~~~WMd~~Tk~~Al~Kl-----~~m~~~IGyPd~~~n~~~l~~~Y~~ 271 (379)
++|- +++-+++.|+.++++++.|+.|++-. ++.+++.+.+-. +.=...+|+|. .+++.+.+.|+.
T Consensus 35 ~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVL-------sDp~kRaIYD~~G~qGL~t~gwEl~~r~--~tpeEIreE~Er 105 (546)
T KOG0718|consen 35 RLFHPDKHTDPDQKKAAEEKFQRIQRAYEVL-------SDPQKRAIYDNYGEQGLKTEGWELGFRG--KTPEEIREEYER 105 (546)
T ss_pred HhcCCcccCChhHHHHHHHHHHHHHHHHHHh-------cChHHHHHHHHhhhccccccCceeecCC--CCHHHHHHHHHH
Confidence 4444 35567899999999999999999864 344444444433 22334456554 456666666654
Q ss_pred c
Q psy5325 272 L 272 (379)
Q Consensus 272 l 272 (379)
+
T Consensus 106 l 106 (546)
T KOG0718|consen 106 L 106 (546)
T ss_pred H
Confidence 4
No 8
>PF13069 DUF3933: Protein of unknown function (DUF3933)
Probab=28.61 E-value=46 Score=22.20 Aligned_cols=19 Identities=37% Similarity=0.212 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhcccccc
Q psy5325 236 KETFQLAENKADAITDMIG 254 (379)
Q Consensus 236 ~~Tk~~Al~Kl~~m~~~IG 254 (379)
.+||+.|++|.+-+...-|
T Consensus 20 aetkqeaiekaellglrtg 38 (53)
T PF13069_consen 20 AETKQEAIEKAELLGLRTG 38 (53)
T ss_pred HhhHHHHHHHHHHhccccC
Confidence 5899999999999887776
No 9
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=26.87 E-value=2.2e+02 Score=21.56 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhhcCCCCCC-----chHhhHHHHHHHHHhhHhhhhhHhhccCCCchHHHHHHHHHHHHH
Q psy5325 157 SKAFRDAYKGLRKALFGSEGGE-----EPWKFCVSDTNSVLGFALGAMYVREVFNGNSKPMAEDMINNIRQA 223 (379)
Q Consensus 157 ~~~~~~~~~~f~~~l~G~~~~~-----~r~~~C~~~v~~~~~~~lg~lyv~~~f~~~~k~~v~~mv~~Ik~~ 223 (379)
.+.|..+..+|..-|.|-..+. -.| .-...+...||....+- -. --+++|..+.+++.+||+-
T Consensus 5 ~eq~dgLveKytELL~Ge~~~e~~EkVk~W-~lYshiaKsMPpL~kHW-N~--~~PeaK~~ik~li~~Ik~l 72 (82)
T PF10835_consen 5 QEQFDGLVEKYTELLLGETSPEMKEKVKQW-ALYSHIAKSMPPLAKHW-NG--TYPEAKEEIKELIEEIKQL 72 (82)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHHHHHHhCcHHHHhh-cc--cCchHHHHHHHHHHHHHHH
Confidence 3455566677777788854321 233 23445566777654331 11 1368999999999999864
No 10
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=23.82 E-value=1.9e+02 Score=18.45 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=21.8
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHhhcc
Q psy5325 220 IRQAFKKNLLSLKWMDKETFQLAENKADAIT 250 (379)
Q Consensus 220 Ik~~f~~~L~~~~WMd~~Tk~~Al~Kl~~m~ 250 (379)
+..-++..| .+.=.+++.|+.|.++|+.|.
T Consensus 6 V~~G~KAal-~NPnvSeeaK~~A~~~Le~~g 35 (36)
T PF10346_consen 6 VAGGYKAAL-HNPNVSEEAKQHAREKLEEMG 35 (36)
T ss_pred HHHHHHHHh-cCCCcCHHHHHHHHHHHHHcc
Confidence 344444444 466779999999999999873
No 11
>COG4227 Antirestriction protein [DNA replication, recombination, and repair]
Probab=21.27 E-value=75 Score=29.84 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=33.2
Q ss_pred ccccchhhhhhcccCCCCCCchhhhh---hhhccccccccCCCCCCCccchH
Q psy5325 313 PMFGSETAATILSSLDPSVDPCDDFY---QYACGSWIKSNPIPDGKASWSMF 361 (379)
Q Consensus 313 NA~Y~p~~N~I~~~~d~~~d~~~df~---~~~~~~w~~~~~i~~~~~~~~~f 361 (379)
-|||+|..-.|..|--+.|....+|| .|-.|+|. +|+.--+++--+.|
T Consensus 179 rAfy~Pa~D~Iq~p~~~aF~da~~yyaTl~HElghwt-gh~~rl~rdLs~~~ 229 (316)
T COG4227 179 RAFYSPASDSIQLPPFEAFRDAINYYATLLHELGHWT-GHEARLDRDLSRAF 229 (316)
T ss_pred cccccCccCeeccCChhhccchHhHHHHHHHHhcccc-Cchhhhhhhhcccc
Confidence 49999999988877656666677888 45558887 56555555444444
No 12
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=20.81 E-value=2.6e+02 Score=27.14 Aligned_cols=48 Identities=10% Similarity=0.317 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCC-CHHHHHHHHHHHhhcccccccCcc
Q psy5325 210 KPMAEDMINNIRQAFKKNLLSLKWM-DKETFQLAENKADAITDMIGFPNY 258 (379)
Q Consensus 210 k~~v~~mv~~Ik~~f~~~L~~~~WM-d~~Tk~~Al~Kl~~m~~~IGyPd~ 258 (379)
...+.++...|...+++.+.- +|- .+.+|.+....+..+-.+-|||+.
T Consensus 266 ~e~l~~la~el~~~lk~~~~v-DW~~ke~~ra~~r~~Ik~~L~k~~ypp~ 314 (335)
T PF11867_consen 266 DEELKELAKELTETLKENVTV-DWTKKEDVRAKMRRAIKRLLRKYGYPPD 314 (335)
T ss_pred HHHHHHHHHHHHHHhccccCc-CceeCccHHHHHHHHHHHHHHHcCCChH
Confidence 456778888888888887754 986 677788887888888888899974
Done!