RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5325
(379 letters)
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 220 bits (563), Expect = 4e-66
Identities = 79/232 (34%), Positives = 134/232 (57%), Gaps = 8/232 (3%)
Query: 76 KISTTDFSKKKKKKNIKHQFLEAAHSAGEMPHRSQLHPVYAPKYLQQLTRLVKEYNSTTD 135
K++ + N FL E+ + VY +YL+Q++ L+ +
Sbjct: 233 KVTAAELQTLAPAINWL-PFLNTIFYPVEINESEPIV-VYDKEYLEQISTLINTTD---- 286
Query: 136 GKIVLNNYLVWQTVKALTGYLSKAFRDAYKGLRKALFGSEGGEEP-WKFCVSDTNSVLGF 194
+ +LNNY++W V+ + +L + F+DA + + ++G++ P WKFCVSDT + LGF
Sbjct: 287 -RCLLNNYMIWNLVRKTSSFLDQRFQDADEKFMEVMYGTKKTSLPRWKFCVSDTENNLGF 345
Query: 195 ALGAMYVREVFNGNSKPMAEDMINNIRQAFKKNLLSLKWMDKETFQLAENKADAITDMIG 254
ALG M+V+ F +SK +A ++I I++AF+++L +LKWMD+ET + A+ KADAI +MIG
Sbjct: 346 ALGPMFVKATFAEDSKSIATEIILEIKKAFEESLSTLKWMDEETRKSAKEKADAIYNMIG 405
Query: 255 FPNYIMDADKLDEKYAELEVKEDEYFRNNIRAGMHSLKNLLRKLDQPVNKTK 306
+PN+IMD +LD+ + + D YF N +R S + +L + N+ +
Sbjct: 406 YPNFIMDPKELDKVFNDYTAVPDLYFENAMRFFNFSWRVTADQLRKAPNRDQ 457
Score = 95.6 bits (238), Expect = 1e-21
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 318 ETAATILSSLDPSVDPCDDFYQYACGSWIKSNPIPDGKASWSMFNILDLKNNFIVKNAL 376
++ILSS+DP+VDPC DF+ YACG WIK+NP+PDG + W F+ L N I+K+ L
Sbjct: 6 SVTSSILSSMDPTVDPCHDFFSYACGGWIKANPVPDGHSRWGTFSNLWEHNQAIIKHLL 64
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 218 bits (556), Expect = 6e-65
Identities = 72/194 (37%), Positives = 111/194 (57%), Gaps = 6/194 (3%)
Query: 114 VYAPKYLQQLTRLVKEYNSTTDGKIVLNNYLVWQTVKALTGYLSKAFRDAYKGLRKALFG 173
VYAP+YL +L ++ +Y+ L N + W+ + L LS+ ++++ RKAL+G
Sbjct: 292 VYAPEYLTKLKPILTKYS-----ARDLQNLMSWRFIMDLVSSLSRTYKESRNAFRKALYG 346
Query: 174 SEGGEEPWKFCVSDTNSVLGFALGAMYVREVFNGNSKPMAEDMINNIRQAFKKNLLSLKW 233
+ W+ C + N + A+G +YV F G SK + ED+I IR+ F + L L W
Sbjct: 347 TTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTW 406
Query: 234 MDKETFQLAENKADAITDMIGFPNYIM-DADKLDEKYAELEVKEDEYFRNNIRAGMHSLK 292
MD ET + AE KA AI + IG+P+ I+ + +KL+ +Y EL KEDEYF N I+ S
Sbjct: 407 MDAETKKRAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKFSQS 466
Query: 293 NLLRKLDQPVNKTK 306
L+KL + V+K +
Sbjct: 467 KQLKKLREKVDKDE 480
Score = 94.8 bits (236), Expect = 2e-21
Identities = 21/59 (35%), Positives = 40/59 (67%)
Query: 318 ETAATILSSLDPSVDPCDDFYQYACGSWIKSNPIPDGKASWSMFNILDLKNNFIVKNAL 376
++AA ++ ++D + +PC DF++YACG W+K N IP+ + + F+IL + ++K+ L
Sbjct: 10 KSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVL 68
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 205 bits (524), Expect = 3e-60
Identities = 46/194 (23%), Positives = 91/194 (46%), Gaps = 13/194 (6%)
Query: 114 VYAPKYLQQLTRLVKEYNSTTDGKIVLNNYLVWQTVKALTGYLSKAFRDA-YKGLRKALF 172
V P YL L N + W+ ++A +L++A ++ + L
Sbjct: 298 VRQPDYLVTFASLWASVN-----VEDWKCWARWRLIRARAPWLTRALVAEDFEFYGRTLT 352
Query: 173 GSEGGEEPWKFCVSDTNSVLGFALGAMYVREVFNGNSKPMAEDMINNIRQAFKKNLLSLK 232
G++ + WK VS +++G A+G +YV+ F ++K + +++N+++A++ ++ L
Sbjct: 353 GAQQLRDRWKRGVSLVENLMGDAVGKLYVQRHFPPDAKSRIDTLVDNLQEAYRISISELD 412
Query: 233 WMDKETFQLAENKADAITDMIGFPNYIMDADKLDEKYAELEVKEDEYFRNNIRAGMHSLK 292
WM +T Q A K + T +G+P D Y++L + D+ + N R +
Sbjct: 413 WMTPQTRQRALAKLNKFTAKVGYPIKWRD-------YSKLAIDRDDLYGNVQRGYAVNHD 465
Query: 293 NLLRKLDQPVNKTK 306
L KL PV++ +
Sbjct: 466 RELAKLFGPVDRDE 479
Score = 92.5 bits (230), Expect = 1e-20
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 1/95 (1%)
Query: 285 RAGMHSLKNLLRKLDQPVNKTKSRPASLPMFGSETAATILSSLDPSVDPCDDFYQYACGS 344
GM S+ + + + + LS +D P DD + + G
Sbjct: 9 HHGMASMTGGQQMGRDLYDDDDKDHPFTMTL-AIPSGIDLSHIDADARPQDDLFGHVNGR 67
Query: 345 WIKSNPIPDGKASWSMFNILDLKNNFIVKNALGEW 379
W+ + IP +A+ F L + V++ + +
Sbjct: 68 WLAEHEIPADRATDGAFRSLFDRAETQVRDLIIQA 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.6 bits (146), Expect = 4e-10
Identities = 59/379 (15%), Positives = 114/379 (30%), Gaps = 106/379 (27%)
Query: 44 KLRTLL-----EKCLIVL----NCTLLSLVVLFGC-LLGSTEKISTTDF--SKKKKKKNI 91
+LR LL E CL+VL N + C +L +T TDF + ++
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 92 KHQ------------FLEAAH-SAGEMPHRSQLHPVYAPKYLQQLTRLVKEYNSTTDGKI 138
H L+ ++P P+ L + +++ +T D
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT---NPRRLSIIAESIRDGLATWDN-- 346
Query: 139 VLNNYLVWQTVKALTGYL----SKAFRDAYKGLRKALFGSEGGEEPWKFCVSDTN---SV 191
+ + + L +R + L ++F P + +
Sbjct: 347 -WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SVF-------P-----PSAHIPTIL 391
Query: 192 LGFALGAMYVREVFNGNSKPMAEDMINNIRQAFKKNLLSLKWMDKETFQL------AENK 245
L + +V ++N + K +L+ K + T + + K
Sbjct: 392 LSLIWFDVIKSDV---------MVVVN---KLHKYSLV-EKQPKESTISIPSIYLELKVK 438
Query: 246 ADAITDMIGFPNYIMDADKLDEKY---AELEVKEDEYFRNNI-----RAGMHSLKNLLRK 297
+ + I+D + + + + D+YF ++I L R
Sbjct: 439 LENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 298 --LDQPVNKTKSRPASLPMFGSETAATILSSLDPSVDPCDDFY-QYACGSWIKSNPIPDG 354
LD + K R S S + L L FY Y C ++P +
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQL--------KFYKPYIC----DNDPKYER 543
Query: 355 KASWSMFNILDLKNNFIVK 373
+ + +F+ K
Sbjct: 544 L-------VNAIL-DFLPK 554
Score = 54.1 bits (129), Expect = 4e-08
Identities = 42/275 (15%), Positives = 90/275 (32%), Gaps = 62/275 (22%)
Query: 17 SMGSAHITEGISTSATHIHYYPSTSFWKLRTLLEKCLIVLNCTLLS-------------- 62
S+ + I +G++T + + KL T++E L VL
Sbjct: 331 SIIAESIRDGLAT----WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 63 -----LVVLFGCLLGSTEKISTTDFSKK----KKKKN----IKHQFLEAAHSAGEMPHRS 109
L +++ ++ S + K K+ K I +LE ++ +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE---LKVKLENEY 443
Query: 110 QLHPVYAPKYLQQLTRLVKEYNSTTDGKIVLNNYLVWQTVKALTGY-LSKA--------F 160
LH Y + K ++S L+ Y G+ L F
Sbjct: 444 ALHRSIVDHY-----NIPKTFDSDDLIPPYLDQYFYSH-----IGHHLKNIEHPERMTLF 493
Query: 161 RDAYKGLR--KALFGSEGGEEPWKFCVSDTNSVLGFALGAMYVREVFNGNSKPMAEDMIN 218
R + R + + W S N++ Y+ + + + +++
Sbjct: 494 RMVFLDFRFLEQKIRHDS--TAWNASGSILNTLQQLKFYKPYICDNDPKYER-LVNAILD 550
Query: 219 NIRQAFKKNLLSLKWMDKETFQLA-ENKADAITDM 252
+ + ++NL+ K+ D ++A + +AI +
Sbjct: 551 FLPKI-EENLICSKYTD--LLRIALMAEDEAIFEE 582
Score = 39.5 bits (91), Expect = 0.002
Identities = 42/296 (14%), Positives = 83/296 (28%), Gaps = 78/296 (26%)
Query: 103 GEMPHRSQ-LHPVYAPKYLQQLTRLVKEYNSTTDG-KIVLNNYLVWQTVKALTGYLSKAF 160
GE ++ + + V+ ++ + D K +L+ + + +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNF-----DCKDVQDMPKSILSKEEIDHIIMS--------- 57
Query: 161 RDAYKGLRKALFGSEGGEEPWKFCVSDTNSVLGF---ALGAMY------VREVFNGNSKP 211
+DA G + LF W V F L Y ++ S
Sbjct: 58 KDAVSGTLR-LF--------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 212 MAE-----DMINNIRQAFKKN-------LLSLKWMDKETFQLAENKADAITDMIGFPNYI 259
D + N Q F K L L+ + +L K I ++G
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR---QALLELRPAKNVLIDGVLGSGKTW 165
Query: 260 MDADKLDEKYAELEVKEDEYF------RNNIRAGMHSLKNLLRKLDQPVNKTKSRPASLP 313
+ D Y + + F N+ + L+ LL ++D +++
Sbjct: 166 VALDVCLS-YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 314 MFGSETAATILSSL--DPSVDPC----DDFYQYACGSWIKSNPIPDGKASWSMFNI 363
+ + L L + C + + W+ FN+
Sbjct: 225 L-RIHSIQAELRRLLKSKPYENCLLVLLN----VQNAKA-----------WNAFNL 264
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 2e-05
Identities = 74/459 (16%), Positives = 137/459 (29%), Gaps = 154/459 (33%)
Query: 10 ELDEDTTS--------MGSAHITEGISTSATHIHYYPSTSFWKLRTLLEKCLIVLNCTLL 61
D++ T+ +G +++ + S F +L CL L
Sbjct: 49 AADDEPTTPAELVGKFLG--YVSSLVEPS-------KVGQF---DQVLNLCLTEFENCYL 96
Query: 62 ------SLVVLFGCLLGSTEKISTTDFSKKKKKKNIKHQFLEAAHSAG---EMPHRSQL- 111
+L LL + + K K+ IK+ ++ A A + S L
Sbjct: 97 EGNDIHALAA---KLLQENDT------TLVKTKELIKN-YITARIMAKRPFDKKSNSALF 146
Query: 112 -------HPVYA--------PKYLQQLTRLVKEYNSTTDGKI-----VLNNYLVWQTVKA 151
+ A Y ++L L + Y+ I L+ L+ T+ A
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE-LIRTTLDA 205
Query: 152 LTGYLSKAFRDAYKGLRKALFGSEGGEE-----P--WK---------FCVSDTNSVLGFA 195
++ + + L + ++ P + V T +LGF
Sbjct: 206 -EKVFTQGL-NILEWLENP--SNTPDKDYLLSIPISCPLIGVIQLAHYVV--TAKLLGFT 259
Query: 196 LGAMYVREVFNGNSK-----PMA---------EDMINNIRQAFKKNLLSLKWMDKETFQL 241
G + R G + A E ++R+A L + E +
Sbjct: 260 PGEL--RSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT-VLFFIGVRCYEAYPN 316
Query: 242 ----AENKADAITDMIGFPNYIM------DADKLDEKYAEL--EVKEDEY--------FR 281
D++ + G P+ M +++ + + + + +
Sbjct: 317 TSLPPSILEDSLENNEGVPSP-MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 282 NNIRAG----MHSLKNLLRK------LDQ---PVNKTKSR------PASLPMFGSETAAT 322
N + +G ++ L LRK LDQ P ++ K + P + P F S
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP-FHS----- 429
Query: 323 ILSSLDPSVDP-CDDFYQYACGSWIKSNPIP-----DGK 355
L P+ D D + K IP DG
Sbjct: 430 --HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Score = 43.9 bits (103), Expect = 9e-05
Identities = 37/237 (15%), Positives = 74/237 (31%), Gaps = 91/237 (38%)
Query: 220 IRQAFKKNLLSLKWMDKETFQLAENKADAITDMIG-FPNYIMDADKLDEK----YAELEV 274
+++ F K L E F A+++ +++G F Y+ + ++ + ++ +
Sbjct: 33 LQEQFNKILPE----PTEGFA-ADDEPTTPAELVGKFLGYV--SSLVEPSKVGQFDQV-L 84
Query: 275 K------EDEYFR-NNIRAGMHSL-KNLLRKLDQPVNKTKS-------------RPASLP 313
E+ Y N+I H+L LL++ D + KTK RP
Sbjct: 85 NLCLTEFENCYLEGNDI----HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 314 ------------------MFG---------SE-----------------TAATILSSLDP 329
+FG E +A LS L
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIR 200
Query: 330 SVDPCDDFYQYAC--GSWIKS-NPIPDGK------ASWSMFNILDLKNNFIVKNALG 377
+ + + W+++ + PD S + ++ L + + LG
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Score = 42.0 bits (98), Expect = 3e-04
Identities = 74/445 (16%), Positives = 130/445 (29%), Gaps = 153/445 (34%)
Query: 14 DTTSMGSAHITEGISTSATHIHYYPSTSFWKLRTLLEKCLIVLN------------CTLL 61
D S ++ G S H+ P+ SF+ L E+ +L T
Sbjct: 2 DAYSTRPLTLSHG---SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA 58
Query: 62 SLVVLFGCLLG----STEKISTTDFSK--KKKKKNIKHQFLEAA--HS-AGEMPHRSQLH 112
LV F LG E F + ++ +LE H+ A ++ +
Sbjct: 59 ELVGKF---LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN--- 112
Query: 113 PVYAPKYLQQLTRLVKEYNSTTDGKIVLNNYLVWQTVKALTGYLSKAFRDAYKGLRK--A 170
L + L+K Y +I+ ++ AL FR +G + A
Sbjct: 113 ----DTTLVKTKELIKNY---ITARIMAKRPFDKKSNSAL-------FRAVGEGNAQLVA 158
Query: 171 LFGSEGGEEPWKFCVSDTNSVLGFA-LGAMYVREVFNGNSKPMAEDMINNIRQA------ 223
+FG +G + + F L R+++ + D+I +
Sbjct: 159 IFGGQGNTDDY------------FEEL-----RDLYQ-TYHVLVGDLIKFSAETLSELIR 200
Query: 224 --------FKKNLLSLKWMDKETFQLAENKADAITD----------MIG---FPNYIMDA 262
F + L L+W++ N D D +IG +Y++ A
Sbjct: 201 TTLDAEKVFTQGLNILEWLEN-----PSNTPD--KDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 263 DKLDEKYAEL---------------------EVKEDEYFRNNIRAGMHSL---------- 291
L EL E E F ++R + L
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 292 ---KNL-LRKLDQPVNKTKSRPASLPMFGSETAATILSSLDPSVDPCDDFYQYACGSWIK 347
+L L+ + + P+ PM LS + + + D+
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPS--PM---------LSISNLTQEQVQDYVNKTN----S 358
Query: 348 SNPIPDGKASWSMFNILDLKNNFIV 372
P + S+ N N +V
Sbjct: 359 HLP-AGKQVEISLVNG---AKNLVV 379
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.092
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 16/38 (42%)
Query: 292 KNLLRKLDQPVNKTKSRPASLPMFGSETA------ATI 323
K L+KL ASL ++ ++A AT+
Sbjct: 19 KQALKKLQ----------ASLKLYADDSAPALAIKATM 46
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 1.0
Identities = 5/30 (16%), Positives = 7/30 (23%)
Query: 169 KALFGSEGGEEPWKFCVSDTNSVLGFALGA 198
+ G E + G GA
Sbjct: 1359 NEMMKHLGRSEGNPVIGVFQKFLTGHPKGA 1388
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA;
2.80A {Staphylococcus aureus}
Length = 514
Score = 30.2 bits (69), Expect = 1.1
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 22/75 (29%)
Query: 215 DMINNIRQAF-----KKNLLSLKWMDKETFQLAENKADAITDM-----IGFPNYIMDADK 264
+I IR + K+NL+ E ++ E +A+AI + D
Sbjct: 411 KVIELIRSSKNKRDAKENLI-------EVYEFTEEQAEAIVMLQLYRLTN-----TDIVA 458
Query: 265 LDEKYAELEVKEDEY 279
L+ ++ ELE +
Sbjct: 459 LEGEHKELEALIKQL 473
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV,
GRAM-positive bacteria, quinolone target, DNA binding,
DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae}
PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A*
3rad_A* 3rae_A* 3raf_A*
Length = 496
Score = 29.8 bits (68), Expect = 1.6
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 10/48 (20%)
Query: 237 ETFQLAENKADAITDM-----IGFPNYIMDADKLDEKYAELEVKEDEY 279
++ E +A+AI + D L E+ AEL K
Sbjct: 407 VSYDFTEEQAEAIVTLQLYRLTN-----TDVVVLQEEEAELREKIAML 449
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic
resistance, breakage-reunion domain, struct genomics;
HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB:
3ifz_A*
Length = 470
Score = 29.8 bits (68), Expect = 1.7
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 10/48 (20%)
Query: 237 ETFQLAENKADAITDM-----IGFPNYIMDADKLDEKYAELEVKEDEY 279
E + E +A AI DM ++ ++ + A++E + +
Sbjct: 393 ELLDIDEIQAQAILDMQLRRLAA-----LERQRIIDDLAKIEAEIADL 435
>1hyn_P BAND 3 anion transport protein; membrane protein; 2.60A {Homo
sapiens} SCOP: d.112.1.2
Length = 379
Score = 29.8 bits (66), Expect = 1.8
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 30 SATHIHYYPSTSFWKLRTLLEKCLIVLNCTLLSLVVLFGCLLGSTEKISTTDFSKKKKKK 89
H+ + S +LR + K ++L+ SL + LL ++ D + + ++
Sbjct: 95 GRPHLSHLTFWSLLELRRVFTKGTVLLDLQETSLAGVANQLL---DRFIFEDQIRPQDRE 151
Query: 90 NIKHQFLEAAHSAGEMPHRSQLHPVYAPK 118
+ L AGE+ + P +
Sbjct: 152 ELLRALLLKHSHAGELEALGGVKPAVLTR 180
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal
reces hypercholesterolemia, ARH, cholesterol; 1.37A
{Rattus norvegicus}
Length = 137
Score = 28.3 bits (63), Expect = 2.2
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 204 VFNGNSKPMAEDMINNIRQAFK 225
F + +A+ + + QAFK
Sbjct: 103 AFLCTKRKVAQAVTLTVAQAFK 124
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA
topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus
aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Length = 692
Score = 29.2 bits (66), Expect = 2.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 237 ETFQLAENKADAITDM-----IGFPNYIMDADKLDEKYAELEVKEDEY 279
+ F+L+E +A AI DM G ++ DK++ +Y EL E
Sbjct: 614 QRFKLSEKQAQAILDMRLRRLTG-----LERDKIEAEYNELLNYISEL 656
>3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin,
cytokine; HET: NAG; 3.05A {Sus scrofa}
Length = 363
Score = 28.4 bits (62), Expect = 4.1
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 13/66 (19%)
Query: 73 STEKISTTDFSKKKKKKNIKHQFLEAAHSAGEMPHR---SQLHPVYAPKYLQQLTRLVKE 129
ST K + K+K+ + I+ Q L + + P P+ + L
Sbjct: 4 STSKTIDMELVKRKRIEAIRGQILSKLR----LASPPSQGDVPPGPLPEAVLAL------ 53
Query: 130 YNSTTD 135
YNST D
Sbjct: 54 YNSTRD 59
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence,
starch degrading, transferase, glycosyltransferase; HET:
PLP; 1.9A {Corynebacterium callunae}
Length = 796
Score = 28.6 bits (65), Expect = 4.4
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 246 ADAITDMIGFPNYIMDADKLD--EKYAELEVKEDEYFRNNIRA 286
+D +T + G +++ D D+L YA +D+ +RA
Sbjct: 454 SDLLTRLSGSDDWVTDLDELKKLRSYA-----DDKSVLEELRA 491
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 28.5 bits (64), Expect = 4.6
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 12/66 (18%)
Query: 237 ETFQLAENKADAITDM-----IGFPNYIMDADKLDEKYAELEVKEDEYFRNNIRAGMHSL 291
E F + E +A+AI ++ ++ ++ + EL K SL
Sbjct: 673 EHFNIDEIQAEAILELKLRHLAK-----LEEMEIRHEQDELSAKAAII--REQLENPESL 725
Query: 292 KNLLRK 297
KNL+
Sbjct: 726 KNLIIS 731
>2wyo_A Glutathione synthetase; ligase, ATP-grAsp; HET: GSH; 3.15A
{Trypanosoma brucei}
Length = 562
Score = 28.0 bits (61), Expect = 5.6
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 37 YPSTSFWKLRTLLEKCLIVLNCTLL 61
+P+ + W R LE+ + ++
Sbjct: 339 FPTDATWAARLSLERSSAIKCPSIP 363
>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP HGS;
1.90A {Glycine max} PDB: 3kak_A* 3kaj_A*
Length = 499
Score = 27.8 bits (61), Expect = 6.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 37 YPSTSFWKLRTLLEKCLIVLNCTLL 61
YPS S W+ R L+E+ + T+
Sbjct: 303 YPSESEWRARLLMEQSSAIKCPTIS 327
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 3.00A {Escherichia
coli}
Length = 716
Score = 27.5 bits (62), Expect = 9.5
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 12/66 (18%)
Query: 237 ETFQLAENKADAITDM-----IGFPNYIMDADKLDEKYAELEVKEDEYFRNNIRAGMHSL 291
F L E +A+AI ++ ++ K+ + +ELE + D+ I A +
Sbjct: 379 SRFGLTETQAEAILELKLRHLAK-----LEEMKIRGEQSELEKERDQL--QGILASERKM 431
Query: 292 KNLLRK 297
NLL+K
Sbjct: 432 NNLLKK 437
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.394
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,675,434
Number of extensions: 329699
Number of successful extensions: 667
Number of sequences better than 10.0: 1
Number of HSP's gapped: 648
Number of HSP's successfully gapped: 30
Length of query: 379
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 284
Effective length of database: 4,049,298
Effective search space: 1150000632
Effective search space used: 1150000632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)