RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5325
         (379 letters)



>d1dmta_ d.92.1.4 (A:) Neutral endopeptidase (neprilysin) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 696

 Score =  124 bits (311), Expect = 1e-31
 Identities = 72/193 (37%), Positives = 111/193 (57%), Gaps = 6/193 (3%)

Query: 114 VYAPKYLQQLTRLVKEYNSTTDGKIVLNNYLVWQTVKALTGYLSKAFRDAYKGLRKALFG 173
           VYAP+YL +L  ++ +Y++       L N + W+ +  L   LS+ ++++    RKAL+G
Sbjct: 292 VYAPEYLTKLKPILTKYSARD-----LQNLMSWRFIMDLVSSLSRTYKESRNAFRKALYG 346

Query: 174 SEGGEEPWKFCVSDTNSVLGFALGAMYVREVFNGNSKPMAEDMINNIRQAFKKNLLSLKW 233
           +      W+ C +  N  +  A+G +YV   F G SK + ED+I  IR+ F + L  L W
Sbjct: 347 TTSETATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTW 406

Query: 234 MDKETFQLAENKADAITDMIGFPNYIM-DADKLDEKYAELEVKEDEYFRNNIRAGMHSLK 292
           MD ET + AE KA AI + IG+P+ I+ + +KL+ +Y EL  KEDEYF N I+    S  
Sbjct: 407 MDAETKKRAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKFSQS 466

Query: 293 NLLRKLDQPVNKT 305
             L+KL + V+K 
Sbjct: 467 KQLKKLREKVDKD 479



 Score = 90.5 bits (223), Expect = 3e-20
 Identities = 22/61 (36%), Positives = 41/61 (67%)

Query: 318 ETAATILSSLDPSVDPCDDFYQYACGSWIKSNPIPDGKASWSMFNILDLKNNFIVKNALG 377
           ++AA ++ ++D + +PC DF++YACG W+K N IP+  + +  F+IL  +   ++K+ L 
Sbjct: 10  KSAARLIQNMDATTEPCTDFFKYACGGWLKRNVIPETSSRYGNFDILRDELEVVLKDVLQ 69

Query: 378 E 378
           E
Sbjct: 70  E 70


>d2hh6a1 a.69.4.1 (A:1-112) Uncharacterized protein BH3980 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 112

 Score = 28.2 bits (63), Expect = 0.75
 Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 15/103 (14%)

Query: 146 WQTVKALTGYLSKAFRDAYKGLRKALFGSEGGEEPWKFCVSDTNSVLGFALGA----MYV 201
           W+ ++A    L K +  AYK ++K ++ S G  + W+        +L            V
Sbjct: 17  WKAMEARAKALPKEYHHAYKAIQKYMWTSGGPTD-WQDTKRIFGGILDLFEEGAAEGKKV 75

Query: 202 REVFNGNSKPMAEDMINNIRQAFKKNLLSLKWMDKETFQLAEN 244
            ++   +     ++++ + +           WMDK   +L ++
Sbjct: 76  TDLTGEDVAAFCDELMKDTK----------TWMDKYRTKLNDS 108


>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 184

 Score = 28.8 bits (64), Expect = 0.87
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 11/66 (16%)

Query: 213 AEDMINNIRQAFKKNLLSLKWMDKETFQLAENKADAITDMIGFPNYIMDADKLDEKYAEL 272
           A   + N+R+  K+ +  L+ + ++  + A  +   +TD      YI + +KL      +
Sbjct: 126 ARVRVRNVRREAKEMIEELEGISEDEKKRALERLQKLTD-----KYIDEINKL------M 174

Query: 273 EVKEDE 278
           E KE E
Sbjct: 175 EAKEKE 180


>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox
           component of NADPH oxidase) {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 105

 Score = 27.1 bits (60), Expect = 1.4
 Identities = 8/30 (26%), Positives = 19/30 (63%)

Query: 208 NSKPMAEDMINNIRQAFKKNLLSLKWMDKE 237
           +S P+ +D++   R+ F++  ++L + D E
Sbjct: 28  SSTPLLKDLLELTRREFQREDIALNYRDAE 57


>d1hynp_ d.112.1.2 (P:) Erythrocite membrane Band 3 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 293

 Score = 26.8 bits (59), Expect = 4.8
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 25  EGISTSATHIHYYPSTSFWKLRTLLEKCLIVLNCTLLSLVVLFGCLLG---STEKISTTD 81
           E  +    H+ +    S  +LR +  K  ++L+    SL  +   LL      ++I   D
Sbjct: 35  ENGAWGRPHLSHLTFWSLLELRRVFTKGTVLLDLQETSLAGVANQLLDRFIFEDQIRPQD 94

Query: 82  FSKKKKKKNIKHQFL-EAAHSAGEMPH 107
             +  +   +KH    E     G  P 
Sbjct: 95  REELLRALLLKHSHAGELEALGGVKPA 121


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 26.8 bits (59), Expect = 5.4
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 10/51 (19%)

Query: 234 MDKETFQLAENKADAITDM-----IGFPNYIMDADKLDEKYAELEVKEDEY 279
           +    + L E +A AI D+      G      + +KL ++Y EL  +  E 
Sbjct: 414 VRDGLYYLTEQQAQAILDLRLQKLTGL-----EHEKLLDEYKELLDQIAEL 459


>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg)
           {Thermus thermophilus [TaxId: 274]}
          Length = 89

 Score = 25.2 bits (55), Expect = 5.6
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 9/54 (16%)

Query: 85  KKKKKNIKHQFLEAAHSAG-------EMPHRSQLHPVYAPKYL--QQLTRLVKE 129
           K+  + +K   L+   +AG       E   R++L P    + L  ++  RL + 
Sbjct: 19  KESARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRPARSLTEEEARRLYRA 72


>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg)
           {Lactococcus lactis [TaxId: 1358]}
          Length = 88

 Score = 24.9 bits (54), Expect = 5.9
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 9/54 (16%)

Query: 85  KKKKKNIKHQFLEAAHSAG-------EMPHRSQLHPVYAPKYL--QQLTRLVKE 129
           +K  K IK   LE    AG       E+   +++HP      L    +  L   
Sbjct: 19  RKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDS 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,392,607
Number of extensions: 63973
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 15
Length of query: 379
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,213,086
Effective search space: 354221112
Effective search space used: 354221112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)