BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5326
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 41.6 bits (96), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 26 IKEDEDKIIPGLGENGRAGTLPGLTNDIITKIMKIEAFNKVLSDHISYTRKIPDARFPEC 85
I+ D ++ G GE GR P + + + + FN +SD IS R +PD R P C
Sbjct: 47 IRRDAQRV--GNGEQGRP--YPMTDAERVDQAYRENGFNIYVSDKISLNRSLPDIRHPNC 102
Query: 86 HELKYDEDLP 95
+ +Y E LP
Sbjct: 103 NSKRYLETLP 112
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With
Udp And Ea2
pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
Length = 501
Score = 34.3 bits (77), Expect = 0.032, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 63 FNKVLSDHISYTRKIPDARFPECHELKYDEDLP 95
FN+V SD + R IPD R +C ++ DLP
Sbjct: 34 FNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLP 66
>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
Acetylgalactosaminyltransferase-T1
Length = 472
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 96 TIGGFSWSGHYTWIPIP 112
T GGF+W ++ W P+P
Sbjct: 168 TYGGFNWKLNFRWYPVP 184
Score = 27.7 bits (60), Expect = 2.9, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 68 SDHISYTRKIPDARFPECHELKYDEDLPT 96
S+ I+ R +PD R C Y ++LPT
Sbjct: 2 SEMIALNRSLPDVRLEGCKTKVYPDNLPT 30
>pdb|3S1W|A Chain A, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|B Chain B, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|C Chain C, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|D Chain D, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
pdb|3S1W|E Chain E, Transaldolase Variant Lys86ala From Thermoplasma
Acidophilum In Complex With Glycerol And Citrate
Length = 223
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 6 FKIPDNKLSTQDLHARYEGLIKEDEDKIIPGLGENG 41
KI D +S + + +YEG++ +E + I GLG+N
Sbjct: 50 LKIVDGPVSVEVVSTKYEGMV--EEARKIHGLGDNA 83
>pdb|3S0C|A Chain A, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|B Chain B, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|C Chain C, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|D Chain D, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S0C|E Chain E, Transaldolase Wt Of Thermoplasma Acidophilum
pdb|3S1U|A Chain A, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|B Chain B, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|C Chain C, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|D Chain D, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1U|E Chain E, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Erythrose 4-Phosphate
pdb|3S1V|A Chain A, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|B Chain B, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|C Chain C, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|D Chain D, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1V|E Chain E, Transaldolase From Thermoplasma Acidophilum In Complex
With D-Fructose 6-Phosphate Schiff-Base Intermediate
pdb|3S1X|A Chain A, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|B Chain B, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|C Chain C, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|D Chain D, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
pdb|3S1X|E Chain E, Transaldolase From Thermoplasma Acidophilum In Complex
With D- Sedoheptulose 7-Phosphate Schiff-Base
Intermediate
Length = 223
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 6 FKIPDNKLSTQDLHARYEGLIKEDEDKIIPGLGENG 41
KI D +S + + +YEG++ +E + I GLG+N
Sbjct: 50 LKIVDGPVSVEVVSTKYEGMV--EEARKIHGLGDNA 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.142 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,717,860
Number of Sequences: 62578
Number of extensions: 256545
Number of successful extensions: 511
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 13
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)