Query psy5326
Match_columns 157
No_of_seqs 130 out of 621
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 23:45:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3737|consensus 100.0 8.7E-38 1.9E-42 278.5 0.7 132 9-140 58-206 (603)
2 KOG3736|consensus 99.9 2.7E-29 5.9E-34 231.1 2.9 121 33-154 80-208 (578)
3 KOG3738|consensus 99.9 9.9E-25 2.2E-29 195.1 -2.2 107 45-154 74-186 (559)
4 cd04184 GT2_RfbC_Mx_like Myxoc 93.5 0.017 3.8E-07 43.8 -0.4 38 95-132 1-42 (202)
5 COG0463 WcaA Glycosyltransfera 93.0 0.023 5.1E-07 39.2 -0.4 38 94-132 2-43 (291)
6 cd06421 CESA_CelA_like CESA_Ce 92.6 0.024 5.2E-07 43.9 -0.8 38 95-132 1-44 (234)
7 TIGR03469 HonB hopene-associat 91.9 0.056 1.2E-06 47.1 0.4 41 91-132 36-81 (384)
8 cd06434 GT2_HAS Hyaluronan syn 89.5 0.083 1.8E-06 41.1 -0.6 37 96-132 1-39 (235)
9 cd02520 Glucosylceramide_synth 88.7 0.17 3.8E-06 39.0 0.7 37 95-132 1-41 (196)
10 TIGR03111 glyc2_xrt_Gpos1 puta 88.6 0.15 3.3E-06 45.4 0.4 40 92-132 46-91 (439)
11 cd02510 pp-GalNAc-T pp-GalNAc- 88.0 0.11 2.4E-06 43.0 -0.8 35 98-132 1-41 (299)
12 cd06427 CESA_like_2 CESA_like_ 86.2 0.18 3.9E-06 40.2 -0.5 37 95-132 1-43 (241)
13 PRK10073 putative glycosyl tra 85.5 0.25 5.3E-06 42.5 -0.1 39 93-132 4-46 (328)
14 cd06439 CESA_like_1 CESA_like_ 84.8 0.28 6.2E-06 38.7 -0.0 41 92-133 26-72 (251)
15 cd04196 GT_2_like_d Subfamily 84.8 0.26 5.6E-06 37.3 -0.2 34 98-132 1-38 (214)
16 PF00535 Glycos_transf_2: Glyc 83.4 0.2 4.4E-06 35.6 -1.3 34 98-132 1-38 (169)
17 PRK11498 bcsA cellulose syntha 82.8 0.4 8.7E-06 47.3 0.1 41 92-132 257-303 (852)
18 TIGR03030 CelA cellulose synth 81.1 0.39 8.5E-06 45.8 -0.6 41 91-131 127-173 (713)
19 PRK10018 putative glycosyl tra 79.5 0.58 1.3E-05 39.7 -0.1 39 93-132 3-45 (279)
20 PRK11204 N-glycosyltransferase 78.6 0.71 1.5E-05 40.1 0.2 40 92-132 51-94 (420)
21 cd02511 Beta4Glucosyltransfera 78.0 0.55 1.2E-05 37.4 -0.6 36 96-132 1-37 (229)
22 PLN02726 dolichyl-phosphate be 76.9 0.79 1.7E-05 36.7 0.0 41 92-132 6-51 (243)
23 cd06435 CESA_NdvC_like NdvC_li 73.0 0.93 2E-05 35.4 -0.5 35 98-132 1-39 (236)
24 PRK14583 hmsR N-glycosyltransf 71.1 1.3 2.9E-05 39.3 0.0 41 92-133 72-116 (444)
25 PRK13915 putative glucosyl-3-p 70.6 1.1 2.3E-05 38.5 -0.7 39 93-132 29-73 (306)
26 cd04190 Chitin_synth_C C-termi 70.4 0.54 1.2E-05 38.0 -2.4 34 99-132 1-48 (244)
27 cd02526 GT2_RfbF_like RfbF is 70.1 0.8 1.7E-05 35.6 -1.5 34 99-132 1-35 (237)
28 cd02522 GT_2_like_a GT_2_like_ 69.9 1.3 2.7E-05 34.0 -0.4 35 97-132 1-39 (221)
29 cd06433 GT_2_WfgS_like WfgS an 63.8 1.6 3.4E-05 32.3 -0.9 36 98-134 1-40 (202)
30 cd06436 GlcNAc-1-P_transferase 62.7 1.4 3E-05 34.0 -1.4 33 99-132 1-36 (191)
31 PTZ00260 dolichyl-phosphate be 61.4 3.1 6.7E-05 36.0 0.4 41 91-132 66-118 (333)
32 cd04195 GT2_AmsE_like GT2_AmsE 61.2 1.7 3.7E-05 32.9 -1.1 34 98-131 1-39 (201)
33 PRK10714 undecaprenyl phosphat 58.3 2.4 5.3E-05 36.5 -0.8 40 93-132 4-49 (325)
34 cd06437 CESA_CaSu_A2 Cellulose 56.9 2.5 5.5E-05 33.1 -0.8 35 95-130 1-41 (232)
35 cd06423 CESA_like CESA_like is 56.2 1.3 2.8E-05 31.1 -2.4 34 99-133 1-38 (180)
36 TIGR03472 HpnI hopanoid biosyn 55.3 5.2 0.00011 34.7 0.7 29 92-121 38-66 (373)
37 PRK10063 putative glycosyl tra 53.8 4 8.7E-05 33.6 -0.2 37 95-132 1-44 (248)
38 cd04192 GT_2_like_e Subfamily 47.5 4.9 0.00011 30.6 -0.5 33 99-132 1-39 (229)
39 PF13641 Glyco_tranf_2_3: Glyc 46.8 3.6 7.8E-05 31.8 -1.4 39 95-134 1-43 (228)
40 cd04179 DPM_DPG-synthase_like 44.6 2.6 5.7E-05 31.2 -2.4 33 99-132 1-39 (185)
41 COG1215 Glycosyltransferases, 44.1 7.7 0.00017 33.2 0.1 39 94-132 53-95 (439)
42 cd04187 DPM1_like_bac Bacteria 42.5 5.5 0.00012 29.7 -1.0 35 99-133 1-41 (181)
43 cd06442 DPM1_like DPM1_like re 40.6 4.8 0.0001 30.8 -1.6 33 99-132 1-38 (224)
44 cd02525 Succinoglycan_BP_ExoA 37.9 10 0.00023 29.2 -0.1 35 97-132 2-42 (249)
45 cd06420 GT2_Chondriotin_Pol_N 36.5 7.9 0.00017 28.6 -0.9 33 99-132 1-37 (182)
46 cd04191 Glucan_BSP_ModH Glucan 36.3 9.9 0.00021 31.7 -0.5 37 97-133 1-46 (254)
47 cd06913 beta3GnTL1_like Beta 1 30.9 6.8 0.00015 30.3 -2.1 33 99-132 1-38 (219)
48 cd06438 EpsO_like EpsO protein 30.8 8.9 0.00019 29.0 -1.5 33 99-132 1-39 (183)
49 KOG4387|consensus 23.9 60 0.0013 27.1 2.1 82 63-150 95-185 (191)
50 TIGR03876 cas_csaX CRISPR-asso 23.3 30 0.00065 29.9 0.3 78 7-88 2-86 (281)
51 KOG3668|consensus 22.4 66 0.0014 28.1 2.1 27 92-120 75-101 (269)
52 cd04188 DPG_synthase DPG_synth 21.2 14 0.00031 28.4 -2.0 33 99-132 1-41 (211)
53 TIGR00607 rad52 recombination 20.2 60 0.0013 26.4 1.4 52 22-77 6-58 (161)
No 1
>KOG3737|consensus
Probab=100.00 E-value=8.7e-38 Score=278.50 Aligned_cols=132 Identities=27% Similarity=0.323 Sum_probs=119.7
Q ss_pred CCCccchHHHHHH---------h-hccccccc-cccCCCCCCCCccccCCCcchhHHHhhhhhccchhhhhcccCCCCCC
Q psy5326 9 PDNKLSTQDLHAR---------Y-EGLIKEDE-DKIIPGLGENGRAGTLPGLTNDIITKIMKIEAFNKVLSDHISYTRKI 77 (157)
Q Consensus 9 ~~~~~~~~~~~~~---------~-e~~i~~~~-~~~~~gpGE~G~~v~L~~~e~~~~e~~~~~~~FN~~lSDrIsL~Rsl 77 (157)
++.++..|.|+-+ + .+++++++ ..+.+||||.|+|+.|+++.+...++..+++|||.++||.||++|++
T Consensus 58 ggd~~~~q~L~g~P~~~p~l~~G~LGNfEPKepe~P~~gPGE~gkp~~l~pe~k~a~~AsekEfGfN~~~SDmISm~R~v 137 (603)
T KOG3737|consen 58 GGDSMQRQYLTGKPQHDPVLRPGILGNFEPKEPEPPVGGPGEKGKPLVLGPEFKQAIQASEKEFGFNMVASDMISMDRNV 137 (603)
T ss_pred CchhHhhhhcCCCCCCCCcccccccCCCCCCCCCCCCCCCCcCCcccccChhHHHHHHHHHHhhCcceeehhhhhcccCc
Confidence 5666777777655 3 67888888 45679999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCcccCCCCCCceEEEEecCCCCCccccceeeccc-CCCCC-----CCCCCCCCCCCCcce
Q psy5326 78 PDARFPECHELKYDEDLPTIGGFSWSGHYTWIPIPDFDTRIMN-NPTDP-----VPPDFKNLEHPPIKC 140 (157)
Q Consensus 78 PD~R~~~Ck~~~Y~~~LPttSVII~FhNEAwStLLRtv~sv~n-~p~~~-----~~dd~s~~~h~~~~~ 140 (157)
+|+|..+|+.+.|+.+||++||||+||||.|||||||||||+. +|+.+ ++|||||+||||.|+
T Consensus 138 ~D~R~EECkhWdYpe~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekL 206 (603)
T KOG3737|consen 138 NDLRQEECKHWDYPENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKL 206 (603)
T ss_pred cccCHhhccccCCcccCCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHH
Confidence 9999999999999999999999999999999999999998885 57775 799999999999997
No 2
>KOG3736|consensus
Probab=99.95 E-value=2.7e-29 Score=231.07 Aligned_cols=121 Identities=28% Similarity=0.382 Sum_probs=104.4
Q ss_pred cCCCCCCCCccccCCCcchhHHHhhhhhccchhhhhcccCCCCCCCCCCCccccC-cccCCCCCCceEEEEecCCCCCcc
Q psy5326 33 IIPGLGENGRAGTLPGLTNDIITKIMKIEAFNKVLSDHISYTRKIPDARFPECHE-LKYDEDLPTIGGFSWSGHYTWIPI 111 (157)
Q Consensus 33 ~~~gpGE~G~~v~L~~~e~~~~e~~~~~~~FN~~lSDrIsL~RslPD~R~~~Ck~-~~Y~~~LPttSVII~FhNEAwStL 111 (157)
...|+|..|+ +.+++.+.++.+.++++++||+++||+||++|++||+|++.|+. ..|.+.||++||||||||||||||
T Consensus 80 ~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~N~~~Sd~I~l~Rsl~D~r~~~C~~~~~~~~~Lp~~Svii~f~nE~~s~l 158 (578)
T KOG3736|consen 80 PGGGGGGGGK-VKLPEAEEDLEDEGYEKNAFNALLSDRISLNRSLPDLRHPECKKLKYYSDKLPTTSVIIIFHNEAWSTL 158 (578)
T ss_pred cCCCccccCc-ccCCcchHHHHHHHhhcccchhhhhhcccccCCCcchhchhhhhccccccccCCCceEEEEecCCCcch
Confidence 4455666666 77778888899999999999999999999999999999999988 455588999999999999999999
Q ss_pred ccceeecccCCCCC------CCCCCCCCCCCCcce-eEecCchHHHHhhh
Q psy5326 112 PDFDTRIMNNPTDP------VPPDFKNLEHPPIKC-ITFTPTPLEKILDT 154 (157)
Q Consensus 112 LRtv~sv~n~p~~~------~~dd~s~~~h~~~~~-~~~~~~~~~~~~~~ 154 (157)
|||||||+|+.+.+ ++||+|+.+|++.++ .+..-.+++||+|+
T Consensus 159 lRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~~v~i~r~ 208 (578)
T KOG3736|consen 159 LRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSKVRILRT 208 (578)
T ss_pred hheEEeehccCChhHeEEEEEeecCcchhhhhhhhHHHHhhhcceeEEee
Confidence 99999999975443 899999999999998 55556666887765
No 3
>KOG3738|consensus
Probab=99.88 E-value=9.9e-25 Score=195.09 Aligned_cols=107 Identities=25% Similarity=0.362 Sum_probs=98.4
Q ss_pred cCCCcchhHHHhhhhhccchhhhhcccCCCCCCCCCCCccccCcccCCCCCCceEEEEecCCCCCccccceeecccC-CC
Q psy5326 45 TLPGLTNDIITKIMKIEAFNKVLSDHISYTRKIPDARFPECHELKYDEDLPTIGGFSWSGHYTWIPIPDFDTRIMNN-PT 123 (157)
Q Consensus 45 ~L~~~e~~~~e~~~~~~~FN~~lSDrIsL~RslPD~R~~~Ck~~~Y~~~LPttSVII~FhNEAwStLLRtv~sv~n~-p~ 123 (157)
.+.+.....++..|+.|.||+..||.+..+|.+||+||++|....|..+||.|||||.|||||.|+|||||-||+|+ |.
T Consensus 74 y~~~~~~~~Ged~y~~~~fnq~esd~l~~~r~i~dtRh~qC~~~~y~~dlp~TsviITfHNEARS~LLRTv~SvlnrsP~ 153 (559)
T KOG3738|consen 74 YLNGGKWHQGEDPYKANSFNQEESDKLNPTRKIPDTRHPQCRDVDYKVDLPPTSVIITFHNEARSTLLRTVVSVLNRSPE 153 (559)
T ss_pred hhcCCCccCCCchhhcCccchhhhhhhCCCCccccccccccccceeecCCCCceEEEEeccHHHHHHHHHHHHHHcCChH
Confidence 45566667889999999999999999999999999999999999999999999999999999999999999999996 55
Q ss_pred CC-----CCCCCCCCCCCCcceeEecCchHHHHhhh
Q psy5326 124 DP-----VPPDFKNLEHPPIKCITFTPTPLEKILDT 154 (157)
Q Consensus 124 ~~-----~~dd~s~~~h~~~~~~~~~~~~~~~~~~~ 154 (157)
++ ++||||+ + +++|-.|+-+|++|.||.
T Consensus 154 ~li~EiILVDD~S~-D--ped~~~L~ri~kvr~LRN 186 (559)
T KOG3738|consen 154 HLIHEIILVDDFSQ-D--PEDGKLLKRIPKVRVLRN 186 (559)
T ss_pred HhhheeEEecCCCC-C--hHHHHHHhhhheeeeecc
Confidence 54 8999999 4 999999999999999875
No 4
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=93.55 E-value=0.017 Score=43.78 Aligned_cols=38 Identities=8% Similarity=-0.087 Sum_probs=31.3
Q ss_pred CCceEEEEecCCCCCccccceeecccCC-CC---CCCCCCCC
Q psy5326 95 PTIGGFSWSGHYTWIPIPDFDTRIMNNP-TD---PVPPDFKN 132 (157)
Q Consensus 95 PttSVII~FhNEAwStLLRtv~sv~n~p-~~---~~~dd~s~ 132 (157)
|++||||+.|||.+..|.+++.|+++.. +. .++||+|.
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~ 42 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDAST 42 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCC
Confidence 7899999999999888999999999853 22 37888874
No 5
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.99 E-value=0.023 Score=39.20 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=31.4
Q ss_pred CCCceEEEEecCCCCCccccceeecccCC--C-CC-CCCCCCC
Q psy5326 94 LPTIGGFSWSGHYTWIPIPDFDTRIMNNP--T-DP-VPPDFKN 132 (157)
Q Consensus 94 LPttSVII~FhNEAwStLLRtv~sv~n~p--~-~~-~~dd~s~ 132 (157)
.|.+||||.-||++ ..|.+++.||++.- . +. ++||+|.
T Consensus 2 ~~~~siiip~~n~~-~~l~~~l~s~~~q~~~~~eiivvddgs~ 43 (291)
T COG0463 2 MPKVSVVIPTYNEE-EYLPEALESLLNQTYKDFEIIVVDDGST 43 (291)
T ss_pred CccEEEEEeccchh-hhHHHHHHHHHhhhhcceEEEEEeCCCC
Confidence 68999999999999 88889999999842 2 33 7899875
No 6
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=92.63 E-value=0.024 Score=43.86 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=30.5
Q ss_pred CCceEEEEecCCCCCccccceeecccC--CC---C-CCCCCCCC
Q psy5326 95 PTIGGFSWSGHYTWIPIPDFDTRIMNN--PT---D-PVPPDFKN 132 (157)
Q Consensus 95 PttSVII~FhNEAwStLLRtv~sv~n~--p~---~-~~~dd~s~ 132 (157)
|++||||..|||....|.+++.|+++. |. + +++||.|+
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~ 44 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRR 44 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCc
Confidence 789999999999777777889999873 44 2 27899875
No 7
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=91.86 E-value=0.056 Score=47.15 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=33.2
Q ss_pred CCCCCCceEEEEecCCCCCccccceeecccC--CCC---CCCCCCCC
Q psy5326 91 DEDLPTIGGFSWSGHYTWIPIPDFDTRIMNN--PTD---PVPPDFKN 132 (157)
Q Consensus 91 ~~~LPttSVII~FhNEAwStLLRtv~sv~n~--p~~---~~~dd~s~ 132 (157)
++..|++||||+.|||+ ..|.|++.|+++. |.. +++||.|.
T Consensus 36 ~~~~p~VSVIIpa~Ne~-~~L~~~L~sL~~q~yp~~~eIIVVDd~St 81 (384)
T TIGR03469 36 PEAWPAVVAVVPARNEA-DVIGECVTSLLEQDYPGKLHVILVDDHST 81 (384)
T ss_pred CCCCCCEEEEEecCCcH-hHHHHHHHHHHhCCCCCceEEEEEeCCCC
Confidence 36789999999999998 7788999999863 433 37899876
No 8
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=89.48 E-value=0.083 Score=41.11 Aligned_cols=37 Identities=11% Similarity=-0.081 Sum_probs=30.6
Q ss_pred CceEEEEecCCCCCccccceeecccC-CCCC-CCCCCCC
Q psy5326 96 TIGGFSWSGHYTWIPIPDFDTRIMNN-PTDP-VPPDFKN 132 (157)
Q Consensus 96 ttSVII~FhNEAwStLLRtv~sv~n~-p~~~-~~dd~s~ 132 (157)
++||||+-|||.+..|.+++.++.+. |.+. ++||.|+
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~ 39 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDD 39 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 47999999999989999999988874 4443 7888876
No 9
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=88.69 E-value=0.17 Score=38.99 Aligned_cols=37 Identities=5% Similarity=-0.087 Sum_probs=29.1
Q ss_pred CCceEEEEecCCCCCccccceeecccC--CC-CC-CCCCCCC
Q psy5326 95 PTIGGFSWSGHYTWIPIPDFDTRIMNN--PT-DP-VPPDFKN 132 (157)
Q Consensus 95 PttSVII~FhNEAwStLLRtv~sv~n~--p~-~~-~~dd~s~ 132 (157)
|.+||||..|||+-. |.+++.||++. |. +. ++||.|.
T Consensus 1 p~vsviip~~n~~~~-l~~~L~sl~~q~~~~~eiivVdd~s~ 41 (196)
T cd02520 1 PGVSILKPLCGVDPN-LYENLESFFQQDYPKYEILFCVQDED 41 (196)
T ss_pred CCeEEEEecCCCCcc-HHHHHHHHHhccCCCeEEEEEeCCCc
Confidence 789999999999875 88999999874 22 22 6788776
No 10
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=88.64 E-value=0.15 Score=45.37 Aligned_cols=40 Identities=15% Similarity=0.065 Sum_probs=33.0
Q ss_pred CCCCCceEEEEecCCCCCccccceeecccC--CCC----CCCCCCCC
Q psy5326 92 EDLPTIGGFSWSGHYTWIPIPDFDTRIMNN--PTD----PVPPDFKN 132 (157)
Q Consensus 92 ~~LPttSVII~FhNEAwStLLRtv~sv~n~--p~~----~~~dd~s~ 132 (157)
..+|++||||.-|||+ .+|-+++.|+.+. |.+ +++||.|.
T Consensus 46 ~~~P~vsVIIP~yNe~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~St 91 (439)
T TIGR03111 46 GKLPDITIIIPVYNSE-DTLFNCIESIYNQTYPIELIDIILANNQST 91 (439)
T ss_pred CCCCCEEEEEEeCCCh-HHHHHHHHHHHhcCCCCCCeEEEEEECCCC
Confidence 5689999999999998 8888999998863 554 27899875
No 11
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=88.04 E-value=0.11 Score=43.04 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=29.2
Q ss_pred eEEEEecCCCCCccccceeecccC-CC----CC-CCCCCCC
Q psy5326 98 GGFSWSGHYTWIPIPDFDTRIMNN-PT----DP-VPPDFKN 132 (157)
Q Consensus 98 SVII~FhNEAwStLLRtv~sv~n~-p~----~~-~~dd~s~ 132 (157)
||||+.|||+...|.+++.||++. +. +. ++||.|.
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~ 41 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSD 41 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCC
Confidence 899999999889999999999963 32 22 8999985
No 12
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=86.18 E-value=0.18 Score=40.15 Aligned_cols=37 Identities=8% Similarity=-0.015 Sum_probs=29.2
Q ss_pred CCceEEEEecCCCCCccccceeecccC--CCC---C-CCCCCCC
Q psy5326 95 PTIGGFSWSGHYTWIPIPDFDTRIMNN--PTD---P-VPPDFKN 132 (157)
Q Consensus 95 PttSVII~FhNEAwStLLRtv~sv~n~--p~~---~-~~dd~s~ 132 (157)
|.+||||..|||+ ..|-+++.||.+. |.+ . ++||.|+
T Consensus 1 p~vsIiIp~~Ne~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~ 43 (241)
T cd06427 1 PVYTILVPLYKEA-EVLPQLIASLSALDYPRSKLDVKLLLEEDD 43 (241)
T ss_pred CeEEEEEecCCcH-HHHHHHHHHHHhCcCCcccEEEEEEECCCC
Confidence 7899999999997 6788999999874 432 2 5788764
No 13
>PRK10073 putative glycosyl transferase; Provisional
Probab=85.51 E-value=0.25 Score=42.55 Aligned_cols=39 Identities=10% Similarity=-0.013 Sum_probs=31.3
Q ss_pred CCCCceEEEEecCCCCCccccceeecccCC-CC---CCCCCCCC
Q psy5326 93 DLPTIGGFSWSGHYTWIPIPDFDTRIMNNP-TD---PVPPDFKN 132 (157)
Q Consensus 93 ~LPttSVII~FhNEAwStLLRtv~sv~n~p-~~---~~~dd~s~ 132 (157)
..|.+||||..||+. ..|-+++.||++.. .+ .++||+|.
T Consensus 4 ~~p~vSVIIP~yN~~-~~L~~~l~Sl~~Qt~~~~EIIiVdDgSt 46 (328)
T PRK10073 4 STPKLSIIIPLYNAG-KDFRAFMESLIAQTWTALEIIIVNDGST 46 (328)
T ss_pred CCCeEEEEEeccCCH-HHHHHHHHHHHhCCCCCeEEEEEeCCCC
Confidence 468999999999997 77888999999752 23 27899986
No 14
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=84.77 E-value=0.28 Score=38.67 Aligned_cols=41 Identities=20% Similarity=0.018 Sum_probs=31.8
Q ss_pred CCCCCceEEEEecCCCCCccccceeecccC--CCC----CCCCCCCCC
Q psy5326 92 EDLPTIGGFSWSGHYTWIPIPDFDTRIMNN--PTD----PVPPDFKNL 133 (157)
Q Consensus 92 ~~LPttSVII~FhNEAwStLLRtv~sv~n~--p~~----~~~dd~s~~ 133 (157)
+..|.+||||..|||. +.|.+++.|+... |.+ +++||.|+-
T Consensus 26 ~~~~~isVvip~~n~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d 72 (251)
T cd06439 26 AYLPTVTIIIPAYNEE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTD 72 (251)
T ss_pred CCCCEEEEEEecCCcH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCc
Confidence 6789999999999997 7788888888763 332 267898873
No 15
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.76 E-value=0.26 Score=37.32 Aligned_cols=34 Identities=6% Similarity=-0.082 Sum_probs=27.5
Q ss_pred eEEEEecCCCCCccccceeecccCC-CC---CCCCCCCC
Q psy5326 98 GGFSWSGHYTWIPIPDFDTRIMNNP-TD---PVPPDFKN 132 (157)
Q Consensus 98 SVII~FhNEAwStLLRtv~sv~n~p-~~---~~~dd~s~ 132 (157)
||||+.|||+ ..|.+++.||++.. ++ +++||.|.
T Consensus 1 sIvIp~yn~~-~~l~~~l~sl~~q~~~~~eiiVvddgS~ 38 (214)
T cd04196 1 AVLMATYNGE-KYLREQLDSILAQTYKNDELIISDDGST 38 (214)
T ss_pred CEEEEecCcH-HHHHHHHHHHHhCcCCCeEEEEEeCCCC
Confidence 7999999998 77889999999742 22 28999986
No 16
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=83.43 E-value=0.2 Score=35.55 Aligned_cols=34 Identities=6% Similarity=-0.214 Sum_probs=26.0
Q ss_pred eEEEEecCCCCCccccceeecccC---CCC-CCCCCCCC
Q psy5326 98 GGFSWSGHYTWIPIPDFDTRIMNN---PTD-PVPPDFKN 132 (157)
Q Consensus 98 SVII~FhNEAwStLLRtv~sv~n~---p~~-~~~dd~s~ 132 (157)
||||+.||+ ...|.|++.|+.+. +.+ +++||+|+
T Consensus 1 Svvip~~n~-~~~l~~~l~sl~~q~~~~~eiivvdd~s~ 38 (169)
T PF00535_consen 1 SVVIPTYNE-AEYLERTLESLLKQTDPDFEIIVVDDGST 38 (169)
T ss_dssp EEEEEESS--TTTHHHHHHHHHHHSGCEEEEEEEECS-S
T ss_pred CEEEEeeCC-HHHHHHHHHHHhhccCCCEEEEEeccccc
Confidence 899999999 88899999999986 122 28999883
No 17
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=82.85 E-value=0.4 Score=47.27 Aligned_cols=41 Identities=15% Similarity=-0.028 Sum_probs=33.1
Q ss_pred CCCCCceEEEEecCCCCCccccceeeccc--CCCC----CCCCCCCC
Q psy5326 92 EDLPTIGGFSWSGHYTWIPIPDFDTRIMN--NPTD----PVPPDFKN 132 (157)
Q Consensus 92 ~~LPttSVII~FhNEAwStLLRtv~sv~n--~p~~----~~~dd~s~ 132 (157)
+..|++||||.-|||....+-+|+.++++ .|.+ +++||.|.
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~ 303 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGR 303 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCC
Confidence 46799999999999998877788887764 5754 48999874
No 18
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=81.06 E-value=0.39 Score=45.80 Aligned_cols=41 Identities=20% Similarity=0.068 Sum_probs=33.0
Q ss_pred CCCCCCceEEEEecCCCCCccccceeeccc--CCCC----CCCCCCC
Q psy5326 91 DEDLPTIGGFSWSGHYTWIPIPDFDTRIMN--NPTD----PVPPDFK 131 (157)
Q Consensus 91 ~~~LPttSVII~FhNEAwStLLRtv~sv~n--~p~~----~~~dd~s 131 (157)
++.+|++||||.-|||+...+-+|+.++++ .|.+ +++||.|
T Consensus 127 ~~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgS 173 (713)
T TIGR03030 127 PEEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGG 173 (713)
T ss_pred cccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcC
Confidence 467899999999999998877678887765 5754 3889986
No 19
>PRK10018 putative glycosyl transferase; Provisional
Probab=79.48 E-value=0.58 Score=39.70 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=30.9
Q ss_pred CCCCceEEEEecCCCCCccccceeecccCC-CC---CCCCCCCC
Q psy5326 93 DLPTIGGFSWSGHYTWIPIPDFDTRIMNNP-TD---PVPPDFKN 132 (157)
Q Consensus 93 ~LPttSVII~FhNEAwStLLRtv~sv~n~p-~~---~~~dd~s~ 132 (157)
+.|.+||||.-||++- .|.+++.||++.. ++ .++||+|.
T Consensus 3 ~~p~VSVIip~yN~~~-~l~~~l~Svl~Qt~~~~EiIVVDDgS~ 45 (279)
T PRK10018 3 DNPLISIYMPTWNRQQ-LAIRAIKSVLRQDYSNWEMIIVDDCST 45 (279)
T ss_pred CCCEEEEEEEeCCCHH-HHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 4789999999999976 4678898998742 22 28999986
No 20
>PRK11204 N-glycosyltransferase; Provisional
Probab=78.62 E-value=0.71 Score=40.07 Aligned_cols=40 Identities=8% Similarity=-0.007 Sum_probs=31.2
Q ss_pred CCCCCceEEEEecCCCCCccccceeecccC--CCC--CCCCCCCC
Q psy5326 92 EDLPTIGGFSWSGHYTWIPIPDFDTRIMNN--PTD--PVPPDFKN 132 (157)
Q Consensus 92 ~~LPttSVII~FhNEAwStLLRtv~sv~n~--p~~--~~~dd~s~ 132 (157)
...|.+||||+-|||. ..+-+++.|+++. |.. .++||.|.
T Consensus 51 ~~~p~vsViIp~yne~-~~i~~~l~sl~~q~yp~~eiiVvdD~s~ 94 (420)
T PRK11204 51 KEYPGVSILVPCYNEG-ENVEETISHLLALRYPNYEVIAINDGSS 94 (420)
T ss_pred CCCCCEEEEEecCCCH-HHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 5689999999999996 6777888888763 432 27899876
No 21
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=78.02 E-value=0.55 Score=37.42 Aligned_cols=36 Identities=8% Similarity=-0.125 Sum_probs=28.0
Q ss_pred CceEEEEecCCCCCccccceeecccCCCCC-CCCCCCC
Q psy5326 96 TIGGFSWSGHYTWIPIPDFDTRIMNNPTDP-VPPDFKN 132 (157)
Q Consensus 96 ttSVII~FhNEAwStLLRtv~sv~n~p~~~-~~dd~s~ 132 (157)
++||||+.|||+. .|-+++.|+.+-..+. ++||+|.
T Consensus 1 ~isvii~~~Ne~~-~l~~~l~sl~~~~~eiivvD~gSt 37 (229)
T cd02511 1 TLSVVIITKNEER-NIERCLESVKWAVDEIIVVDSGST 37 (229)
T ss_pred CEEEEEEeCCcHH-HHHHHHHHHhcccCEEEEEeCCCC
Confidence 4799999999985 5778888887664454 7898875
No 22
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=76.88 E-value=0.79 Score=36.68 Aligned_cols=41 Identities=12% Similarity=-0.132 Sum_probs=24.6
Q ss_pred CCCCCceEEEEecCCCCC--ccccceeecccCCCC---CCCCCCCC
Q psy5326 92 EDLPTIGGFSWSGHYTWI--PIPDFDTRIMNNPTD---PVPPDFKN 132 (157)
Q Consensus 92 ~~LPttSVII~FhNEAwS--tLLRtv~sv~n~p~~---~~~dd~s~ 132 (157)
...|.+||||..|||+-. .+++.+...+.++.+ +++||+|.
T Consensus 6 ~~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~ 51 (243)
T PLN02726 6 EGAMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSP 51 (243)
T ss_pred CCCceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCC
Confidence 567899999999999643 222222222233223 27888875
No 23
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=72.98 E-value=0.93 Score=35.39 Aligned_cols=35 Identities=6% Similarity=-0.192 Sum_probs=26.6
Q ss_pred eEEEEecCCCCCccccceeecccC--CC-C-CCCCCCCC
Q psy5326 98 GGFSWSGHYTWIPIPDFDTRIMNN--PT-D-PVPPDFKN 132 (157)
Q Consensus 98 SVII~FhNEAwStLLRtv~sv~n~--p~-~-~~~dd~s~ 132 (157)
||||..|||+...|-+++.|+.+. |. + +++||.|.
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~ 39 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTK 39 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Confidence 899999999866777888888764 22 2 27888875
No 24
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=71.08 E-value=1.3 Score=39.31 Aligned_cols=41 Identities=5% Similarity=-0.198 Sum_probs=31.4
Q ss_pred CCCCCceEEEEecCCCCCccccceeecccC--CCC--CCCCCCCCC
Q psy5326 92 EDLPTIGGFSWSGHYTWIPIPDFDTRIMNN--PTD--PVPPDFKNL 133 (157)
Q Consensus 92 ~~LPttSVII~FhNEAwStLLRtv~sv~n~--p~~--~~~dd~s~~ 133 (157)
+..|.+||||.-|||+- .+.+++.|+++. |.. .++||.|+-
T Consensus 72 ~~~p~vsViIP~yNE~~-~i~~~l~sll~q~yp~~eIivVdDgs~D 116 (444)
T PRK14583 72 KGHPLVSILVPCFNEGL-NARETIHAALAQTYTNIEVIAINDGSSD 116 (444)
T ss_pred CCCCcEEEEEEeCCCHH-HHHHHHHHHHcCCCCCeEEEEEECCCCc
Confidence 45799999999999984 577888888864 422 278998763
No 25
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=70.61 E-value=1.1 Score=38.48 Aligned_cols=39 Identities=8% Similarity=-0.230 Sum_probs=27.9
Q ss_pred CCCCceEEEEecCCCCCccccceeecccC-----CCC-CCCCCCCC
Q psy5326 93 DLPTIGGFSWSGHYTWIPIPDFDTRIMNN-----PTD-PVPPDFKN 132 (157)
Q Consensus 93 ~LPttSVII~FhNEAwStLLRtv~sv~n~-----p~~-~~~dd~s~ 132 (157)
.-|.+||||..|||+- +|.+++.++.+. +.+ +++||+|.
T Consensus 29 ~~~~vSVVIPayNee~-~I~~~l~sl~~~~~~~~~~EIIVVDDgSt 73 (306)
T PRK13915 29 AGRTVSVVLPALNEEE-TVGKVVDSIRPLLMEPLVDELIVIDSGST 73 (306)
T ss_pred CCCCEEEEEecCCcHH-HHHHHHHHHHHHhccCCCcEEEEEeCCCc
Confidence 5689999999999974 566666666642 223 27899875
No 26
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=70.42 E-value=0.54 Score=38.03 Aligned_cols=34 Identities=15% Similarity=-0.197 Sum_probs=28.2
Q ss_pred EEEEecCCCCCccccceeecccC--C--------CC----CCCCCCCC
Q psy5326 99 GFSWSGHYTWIPIPDFDTRIMNN--P--------TD----PVPPDFKN 132 (157)
Q Consensus 99 VII~FhNEAwStLLRtv~sv~n~--p--------~~----~~~dd~s~ 132 (157)
|||.-|||+-..|.++++||++. | .+ +++||+|.
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~ 48 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAI 48 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCcc
Confidence 78999999989999999999985 5 33 26788876
No 27
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=70.07 E-value=0.8 Score=35.60 Aligned_cols=34 Identities=3% Similarity=-0.058 Sum_probs=27.2
Q ss_pred EEEEecCCCCCccccceeecccCCCCC-CCCCCCC
Q psy5326 99 GFSWSGHYTWIPIPDFDTRIMNNPTDP-VPPDFKN 132 (157)
Q Consensus 99 VII~FhNEAwStLLRtv~sv~n~p~~~-~~dd~s~ 132 (157)
|||+.|||....|.+++.||.+...+. ++||.|+
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q~~~iivvDn~s~ 35 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQVDKVVVVDNSSG 35 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhccCCEEEEEeCCCC
Confidence 578899998899999999999874443 6777765
No 28
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=69.85 E-value=1.3 Score=34.00 Aligned_cols=35 Identities=6% Similarity=-0.139 Sum_probs=26.5
Q ss_pred ceEEEEecCCCCCccccceeecccCC---CC-CCCCCCCC
Q psy5326 97 IGGFSWSGHYTWIPIPDFDTRIMNNP---TD-PVPPDFKN 132 (157)
Q Consensus 97 tSVII~FhNEAwStLLRtv~sv~n~p---~~-~~~dd~s~ 132 (157)
+||||+.||++. .|.+++.|+.+.. .+ +++||.|.
T Consensus 1 vsvii~~~n~~~-~l~~~l~sl~~q~~~~~evivvdd~s~ 39 (221)
T cd02522 1 LSIIIPTLNEAE-NLPRLLASLRRLNPLPLEIIVVDGGST 39 (221)
T ss_pred CEEEEEccCcHH-HHHHHHHHHHhccCCCcEEEEEeCCCC
Confidence 599999999976 6778888888753 22 27888875
No 29
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=63.81 E-value=1.6 Score=32.30 Aligned_cols=36 Identities=3% Similarity=-0.158 Sum_probs=26.9
Q ss_pred eEEEEecCCCCCccccceeecccC-CC--C-CCCCCCCCCC
Q psy5326 98 GGFSWSGHYTWIPIPDFDTRIMNN-PT--D-PVPPDFKNLE 134 (157)
Q Consensus 98 SVII~FhNEAwStLLRtv~sv~n~-p~--~-~~~dd~s~~~ 134 (157)
||||..||+. ..|.+++.|+.+. .+ + +++||+|.-+
T Consensus 1 sivi~~~n~~-~~l~~~l~sl~~q~~~~~evivvDd~s~d~ 40 (202)
T cd06433 1 SIITPTYNQA-ETLEETIDSVLSQTYPNIEYIVIDGGSTDG 40 (202)
T ss_pred CEEEeccchH-HHHHHHHHHHHhCCCCCceEEEEeCCCCcc
Confidence 7999999997 7777888888763 22 2 2789998754
No 30
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=62.74 E-value=1.4 Score=34.03 Aligned_cols=33 Identities=12% Similarity=-0.040 Sum_probs=25.6
Q ss_pred EEEEecCCCCCccccceeecccCCCC---CCCCCCCC
Q psy5326 99 GFSWSGHYTWIPIPDFDTRIMNNPTD---PVPPDFKN 132 (157)
Q Consensus 99 VII~FhNEAwStLLRtv~sv~n~p~~---~~~dd~s~ 132 (157)
|||..|||+ .+|-+++.|+++..+. +++||.|.
T Consensus 1 ViIp~~Ne~-~~l~~~l~sl~~~~~~~eIivvdd~S~ 36 (191)
T cd06436 1 VLVPCLNEE-AVIQRTLASLLRNKPNFLVLVIDDASD 36 (191)
T ss_pred CEEeccccH-HHHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 789999997 7888899998875333 27888775
No 31
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=61.37 E-value=3.1 Score=35.99 Aligned_cols=41 Identities=7% Similarity=0.017 Sum_probs=29.4
Q ss_pred CCCCCCceEEEEecCCCCCccccceeeccc--------CCC---C-CCCCCCCC
Q psy5326 91 DEDLPTIGGFSWSGHYTWIPIPDFDTRIMN--------NPT---D-PVPPDFKN 132 (157)
Q Consensus 91 ~~~LPttSVII~FhNEAwStLLRtv~sv~n--------~p~---~-~~~dd~s~ 132 (157)
....|.+||||..|||+- +|.+++.++.+ .+. + +++||+|.
T Consensus 66 ~~~~~~isVVIP~yNe~~-~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgSt 118 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEED-RLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSK 118 (333)
T ss_pred CCCCeEEEEEEeeCCCHH-HHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCC
Confidence 467889999999999975 46776666653 122 2 27999983
No 32
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=61.23 E-value=1.7 Score=32.85 Aligned_cols=34 Identities=6% Similarity=-0.202 Sum_probs=26.0
Q ss_pred eEEEEecCCC-CCccccceeecccCC---CCC-CCCCCC
Q psy5326 98 GGFSWSGHYT-WIPIPDFDTRIMNNP---TDP-VPPDFK 131 (157)
Q Consensus 98 SVII~FhNEA-wStLLRtv~sv~n~p---~~~-~~dd~s 131 (157)
||||+.||+. ...|.+++.||++.. .+. ++||+|
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~s 39 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGP 39 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCC
Confidence 7999999986 467888999998742 332 678887
No 33
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=58.30 E-value=2.4 Score=36.45 Aligned_cols=40 Identities=5% Similarity=-0.175 Sum_probs=24.4
Q ss_pred CCCCceEEEEecCCCCC--ccccceeecccC-CCC---CCCCCCCC
Q psy5326 93 DLPTIGGFSWSGHYTWI--PIPDFDTRIMNN-PTD---PVPPDFKN 132 (157)
Q Consensus 93 ~LPttSVII~FhNEAwS--tLLRtv~sv~n~-p~~---~~~dd~s~ 132 (157)
..++.||||..|||+-+ .+++.+.++++. +.+ .++||+|.
T Consensus 4 ~~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~ 49 (325)
T PRK10714 4 PIKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSS 49 (325)
T ss_pred CCCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCC
Confidence 34679999999999753 334333333332 222 27888874
No 34
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=56.94 E-value=2.5 Score=33.08 Aligned_cols=35 Identities=14% Similarity=-0.051 Sum_probs=26.3
Q ss_pred CCceEEEEecCCCCCccccceeeccc--CCCC---C-CCCCC
Q psy5326 95 PTIGGFSWSGHYTWIPIPDFDTRIMN--NPTD---P-VPPDF 130 (157)
Q Consensus 95 PttSVII~FhNEAwStLLRtv~sv~n--~p~~---~-~~dd~ 130 (157)
|.+||||.-|||+ ..|.+++.|+.+ .|.+ . ++||-
T Consensus 1 p~vSViIp~yNe~-~~l~~~L~sl~~q~~~~~~~eIiVvD~s 41 (232)
T cd06437 1 PMVTVQLPVFNEK-YVVERLIEAACALDYPKDRLEIQVLDDS 41 (232)
T ss_pred CceEEEEecCCcH-HHHHHHHHHHHhcCCCccceEEEEEECC
Confidence 6899999999996 477888888875 3543 2 67773
No 35
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=56.19 E-value=1.3 Score=31.12 Aligned_cols=34 Identities=9% Similarity=-0.215 Sum_probs=25.8
Q ss_pred EEEEecCCCCCccccceeecccCC---CC-CCCCCCCCC
Q psy5326 99 GFSWSGHYTWIPIPDFDTRIMNNP---TD-PVPPDFKNL 133 (157)
Q Consensus 99 VII~FhNEAwStLLRtv~sv~n~p---~~-~~~dd~s~~ 133 (157)
|||..|||+ ..|.+++.|+++.. .+ +++||.|+-
T Consensus 1 Viip~~n~~-~~l~~~l~sl~~q~~~~~~iivvdd~s~d 38 (180)
T cd06423 1 IIVPAYNEE-AVIERTIESLLALDYPKLEVIVVDDGSTD 38 (180)
T ss_pred CeecccChH-HHHHHHHHHHHhCCCCceEEEEEeCCCcc
Confidence 688999998 78888888888753 22 278888763
No 36
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=55.32 E-value=5.2 Score=34.72 Aligned_cols=29 Identities=3% Similarity=-0.136 Sum_probs=23.1
Q ss_pred CCCCCceEEEEecCCCCCccccceeecccC
Q psy5326 92 EDLPTIGGFSWSGHYTWIPIPDFDTRIMNN 121 (157)
Q Consensus 92 ~~LPttSVII~FhNEAwStLLRtv~sv~n~ 121 (157)
...|.+||||+-|||+- .|-+++.|+.+.
T Consensus 38 ~~~p~VSViiP~~nee~-~l~~~L~Sl~~q 66 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDEP-ELYENLASFCRQ 66 (373)
T ss_pred CCCCCeEEEEECCCCCh-hHHHHHHHHHhc
Confidence 45799999999999975 566777787763
No 37
>PRK10063 putative glycosyl transferase; Provisional
Probab=53.83 E-value=4 Score=33.57 Aligned_cols=37 Identities=11% Similarity=-0.033 Sum_probs=27.0
Q ss_pred CCceEEEEecCCCCCccccceeeccc---CC-CC---CCCCCCCC
Q psy5326 95 PTIGGFSWSGHYTWIPIPDFDTRIMN---NP-TD---PVPPDFKN 132 (157)
Q Consensus 95 PttSVII~FhNEAwStLLRtv~sv~n---~p-~~---~~~dd~s~ 132 (157)
|.+||||+-||++ ..|.+++.||.+ .+ .+ .++||+|.
T Consensus 1 ~~vSVIi~~yN~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgSt 44 (248)
T PRK10063 1 MLLSVITVAFRNL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSN 44 (248)
T ss_pred CeEEEEEEeCCCH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCc
Confidence 6789999999984 467888888863 22 22 27899875
No 38
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=47.54 E-value=4.9 Score=30.59 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=25.5
Q ss_pred EEEEecCCCCCccccceeecccC--CC---C-CCCCCCCC
Q psy5326 99 GFSWSGHYTWIPIPDFDTRIMNN--PT---D-PVPPDFKN 132 (157)
Q Consensus 99 VII~FhNEAwStLLRtv~sv~n~--p~---~-~~~dd~s~ 132 (157)
|||+.|||. ..|.+++.|++.. |. + +++||.|.
T Consensus 1 viip~~n~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~ 39 (229)
T cd04192 1 VVIAARNEA-ENLPRLLQSLSALDYPKEKFEVILVDDHST 39 (229)
T ss_pred CEEEecCcH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCC
Confidence 789999996 7788999998764 33 1 37999874
No 39
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=46.81 E-value=3.6 Score=31.79 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=22.1
Q ss_pred CCceEEEEecCCCCCccccceeecccC--CC-C-CCCCCCCCCC
Q psy5326 95 PTIGGFSWSGHYTWIPIPDFDTRIMNN--PT-D-PVPPDFKNLE 134 (157)
Q Consensus 95 PttSVII~FhNEAwStLLRtv~sv~n~--p~-~-~~~dd~s~~~ 134 (157)
|.+||||+.|||.- .|.+++.|++.. |. + +++||.+.-+
T Consensus 1 P~v~Vvip~~~~~~-~l~~~l~sl~~~~~~~~~v~vvd~~~~~~ 43 (228)
T PF13641_consen 1 PRVSVVIPAYNEDD-VLRRCLESLLAQDYPRLEVVVVDDGSDDE 43 (228)
T ss_dssp --EEEE--BSS-HH-HHHHHHHHHTTSHHHTEEEEEEEE-SSS-
T ss_pred CEEEEEEEecCCHH-HHHHHHHHHHcCCCCCeEEEEEECCCChH
Confidence 78999999999955 888888888863 22 1 2566665533
No 40
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=44.65 E-value=2.6 Score=31.20 Aligned_cols=33 Identities=18% Similarity=0.040 Sum_probs=25.0
Q ss_pred EEEEecCCCCCccccceeecccCCC---C---CCCCCCCC
Q psy5326 99 GFSWSGHYTWIPIPDFDTRIMNNPT---D---PVPPDFKN 132 (157)
Q Consensus 99 VII~FhNEAwStLLRtv~sv~n~p~---~---~~~dd~s~ 132 (157)
|||+.||+. ..|.+++.|+.+... . .++||.|.
T Consensus 1 iii~~~n~~-~~l~~~l~sl~~~~~~~~~~eiivvd~~s~ 39 (185)
T cd04179 1 VVIPAYNEE-ENIPELVERLLAVLEEGYDYEIIVVDDGST 39 (185)
T ss_pred CeecccChH-hhHHHHHHHHHHHhccCCCEEEEEEcCCCC
Confidence 689999985 678888888887632 2 27888875
No 41
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=44.10 E-value=7.7 Score=33.24 Aligned_cols=39 Identities=13% Similarity=0.056 Sum_probs=31.8
Q ss_pred CCCceEEEEecCCCCCccccceeecccC--CC-C-CCCCCCCC
Q psy5326 94 LPTIGGFSWSGHYTWIPIPDFDTRIMNN--PT-D-PVPPDFKN 132 (157)
Q Consensus 94 LPttSVII~FhNEAwStLLRtv~sv~n~--p~-~-~~~dd~s~ 132 (157)
+|++||||.-|||...++-+++.++.+- |. + +++||.+.
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~ 95 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGST 95 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCC
Confidence 7999999999999999999999999875 32 2 37777543
No 42
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=42.53 E-value=5.5 Score=29.75 Aligned_cols=35 Identities=3% Similarity=-0.292 Sum_probs=21.0
Q ss_pred EEEEecCCCCC--ccccceeecccC---CCC-CCCCCCCCC
Q psy5326 99 GFSWSGHYTWI--PIPDFDTRIMNN---PTD-PVPPDFKNL 133 (157)
Q Consensus 99 VII~FhNEAwS--tLLRtv~sv~n~---p~~-~~~dd~s~~ 133 (157)
|||.+|||+.. .+++++.++... +.+ +++||+|+-
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d 41 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTD 41 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCc
Confidence 78999999843 244455444432 122 278888763
No 43
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=40.63 E-value=4.8 Score=30.80 Aligned_cols=33 Identities=15% Similarity=-0.040 Sum_probs=24.1
Q ss_pred EEEEecCCCCCccccceeecccCC----CC-CCCCCCCC
Q psy5326 99 GFSWSGHYTWIPIPDFDTRIMNNP----TD-PVPPDFKN 132 (157)
Q Consensus 99 VII~FhNEAwStLLRtv~sv~n~p----~~-~~~dd~s~ 132 (157)
|||..|||+ ..|.+++.|+.+.. .+ +++||.|.
T Consensus 1 ViIp~yn~~-~~l~~~l~sl~~q~~~~~~eiiiVDd~S~ 38 (224)
T cd06442 1 IIIPTYNER-ENIPELIERLDAALKGIDYEIIVVDDNSP 38 (224)
T ss_pred CeEeccchh-hhHHHHHHHHHHhhcCCCeEEEEEeCCCC
Confidence 789999996 55778888887632 22 37899885
No 44
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=37.85 E-value=10 Score=29.16 Aligned_cols=35 Identities=11% Similarity=-0.037 Sum_probs=25.9
Q ss_pred ceEEEEecCCCCCccccceeecccC--C-CCC---CCCCCCC
Q psy5326 97 IGGFSWSGHYTWIPIPDFDTRIMNN--P-TDP---VPPDFKN 132 (157)
Q Consensus 97 tSVII~FhNEAwStLLRtv~sv~n~--p-~~~---~~dd~s~ 132 (157)
+||||+-|||+ ..|.|++.++... | ..+ ++||.|.
T Consensus 2 ~sIiip~~n~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~ 42 (249)
T cd02525 2 VSIIIPVRNEE-KYIEELLESLLNQSYPKDLIEIIVVDGGST 42 (249)
T ss_pred EEEEEEcCCch-hhHHHHHHHHHhccCCCCccEEEEEeCCCC
Confidence 79999999996 5678888888754 2 222 6777765
No 45
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=36.54 E-value=7.9 Score=28.59 Aligned_cols=33 Identities=6% Similarity=-0.081 Sum_probs=24.0
Q ss_pred EEEEecCCCCCccccceeecccCC---CC-CCCCCCCC
Q psy5326 99 GFSWSGHYTWIPIPDFDTRIMNNP---TD-PVPPDFKN 132 (157)
Q Consensus 99 VII~FhNEAwStLLRtv~sv~n~p---~~-~~~dd~s~ 132 (157)
|||..||+. ..|-+++.||.+.. .+ .++||.|.
T Consensus 1 ivip~~n~~-~~l~~~l~sl~~q~~~~~eiivvdd~s~ 37 (182)
T cd06420 1 LIITTYNRP-EALELVLKSVLNQSILPFEVIIADDGST 37 (182)
T ss_pred CEEeecCCh-HHHHHHHHHHHhccCCCCEEEEEeCCCc
Confidence 688899985 67888899988742 22 27888775
No 46
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=36.32 E-value=9.9 Score=31.72 Aligned_cols=37 Identities=3% Similarity=-0.275 Sum_probs=27.9
Q ss_pred ceEEEEecCCCCCccccceeeccc-----CC-CCC---CCCCCCCC
Q psy5326 97 IGGFSWSGHYTWIPIPDFDTRIMN-----NP-TDP---VPPDFKNL 133 (157)
Q Consensus 97 tSVII~FhNEAwStLLRtv~sv~n-----~p-~~~---~~dd~s~~ 133 (157)
+||+|.-|||..++|.-++.++.+ .+ +.+ ++||.++-
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~ 46 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDP 46 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCCh
Confidence 699999999999988777766553 22 343 78998763
No 47
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=30.95 E-value=6.8 Score=30.35 Aligned_cols=33 Identities=6% Similarity=-0.124 Sum_probs=24.7
Q ss_pred EEEEecCCCCCccccceeecccC--CC--C-CCCCCCCC
Q psy5326 99 GFSWSGHYTWIPIPDFDTRIMNN--PT--D-PVPPDFKN 132 (157)
Q Consensus 99 VII~FhNEAwStLLRtv~sv~n~--p~--~-~~~dd~s~ 132 (157)
|||..||++ ..|-+++.||++. |. + .++||+|.
T Consensus 1 ViIp~yn~~-~~l~~~l~sl~~q~~~~~~eiiVvDd~S~ 38 (219)
T cd06913 1 IILPVHNGE-QWLDECLESVLQQDFEGTLELSVFNDAST 38 (219)
T ss_pred CEEeecCcH-HHHHHHHHHHHhCCCCCCEEEEEEeCCCC
Confidence 688899985 6888888888863 32 2 27899885
No 48
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=30.82 E-value=8.9 Score=28.99 Aligned_cols=33 Identities=12% Similarity=-0.052 Sum_probs=24.3
Q ss_pred EEEEecCCCCCccccceeecccC--CCC----CCCCCCCC
Q psy5326 99 GFSWSGHYTWIPIPDFDTRIMNN--PTD----PVPPDFKN 132 (157)
Q Consensus 99 VII~FhNEAwStLLRtv~sv~n~--p~~----~~~dd~s~ 132 (157)
|||..|||+ .+|.+++.++.+. |.. +++||.|.
T Consensus 1 VvIp~~ne~-~~i~~~l~sl~~~~~p~~~~eiivvdd~s~ 39 (183)
T cd06438 1 ILIPAHNEE-AVIGNTVRSLKAQDYPRELYRIFVVADNCT 39 (183)
T ss_pred CEEeccchH-HHHHHHHHHHHhcCCCCcccEEEEEeCCCC
Confidence 789999998 7788888888752 422 26888874
No 49
>KOG4387|consensus
Probab=23.89 E-value=60 Score=27.06 Aligned_cols=82 Identities=24% Similarity=0.259 Sum_probs=48.7
Q ss_pred chhhhhcccCCCCCCCCCCCccccCc------ccC-CCCCCceEEEEec--CCCCCccccceeecccCCCCCCCCCCCCC
Q psy5326 63 FNKVLSDHISYTRKIPDARFPECHEL------KYD-EDLPTIGGFSWSG--HYTWIPIPDFDTRIMNNPTDPVPPDFKNL 133 (157)
Q Consensus 63 FN~~lSDrIsL~RslPD~R~~~Ck~~------~Y~-~~LPttSVII~Fh--NEAwStLLRtv~sv~n~p~~~~~dd~s~~ 133 (157)
+|.++|+. ++-=-+||---..=.+. .|. ++|---+|+|||+ +|-...|+||.|=|==.| +..| .=
T Consensus 95 W~~vl~s~-~l~~~IPdq~l~~gsKe~lvalLEfAEekl~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEp---vrp~--HP 168 (191)
T KOG4387|consen 95 WHGVLSTE-SLFFEIPDQALDVGSKEGLVALLEFAEEKLHVDKVFICFDKNREDRAALLRTFSYVGFEP---VRPD--HP 168 (191)
T ss_pred cceEEecc-cEEEecCcchhcccchHhHHHHHHHHHHhhccceEEEEEecCccChHhhhhhehcceeee---cCCC--CC
Confidence 67777663 23333455444333332 344 6788889999998 677889999987442221 2222 23
Q ss_pred CCCCcceeEecCchHHH
Q psy5326 134 EHPPIKCITFTPTPLEK 150 (157)
Q Consensus 134 ~h~~~~~~~~~~~~~~~ 150 (157)
.|+|..=.-|-.||++|
T Consensus 169 ~~pp~~~~ffM~Y~~er 185 (191)
T KOG4387|consen 169 VVPPRPDVFFMVYPLER 185 (191)
T ss_pred CCCCccceEEEEEeecc
Confidence 44555556677788776
No 50
>TIGR03876 cas_csaX CRISPR-associated protein, CsaX family. This family comprises a minor CRISPR-associated protein family. It occurs only in the context of the (strictly archaeal) Apern subtype of CRISPR/Cas system, and is further restricted to the Sulfolobales, including Metallosphaera sedula DSM 5348 and multiple species of the genus Sulfolobus.
Probab=23.28 E-value=30 Score=29.89 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=50.7
Q ss_pred EcCCCcc-----chHHHHHHhhccccccccccCCCCCCCCccccCCCcchhHHHhhhhhccchhhhhcccC--CCCCCCC
Q psy5326 7 KIPDNKL-----STQDLHARYEGLIKEDEDKIIPGLGENGRAGTLPGLTNDIITKIMKIEAFNKVLSDHIS--YTRKIPD 79 (157)
Q Consensus 7 ~~~~~~~-----~~~~~~~~~e~~i~~~~~~~~~gpGE~G~~v~L~~~e~~~~e~~~~~~~FN~~lSDrIs--L~RslPD 79 (157)
.|||+++ .+.++....|+.-+++..+-..--|+.| +..|++.+++..++..+ +||.-.++-|| +.--=||
T Consensus 2 EI~D~elr~vl~lAs~iA~~~E~~~~~r~~k~kk~~g~~~-iiPLsgNDKkp~e~~Lk--C~Nfpt~~~iS~vlknfn~~ 78 (281)
T TIGR03876 2 EIPDNELRDVLQLASSIARGKEEERRKRIEKTKKIEGILR-IIPLSGNDKKPFEQALK--CLNFPTQSTISEVLKNFNPD 78 (281)
T ss_pred CCChHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccee-eeccCCCCcchHHHHHH--HcCCCCcchHHHHHHhCChh
Confidence 4777776 2445555566666666666666667666 67788999999998886 77776777666 2222345
Q ss_pred CCCccccCc
Q psy5326 80 ARFPECHEL 88 (157)
Q Consensus 80 ~R~~~Ck~~ 88 (157)
.. ++|...
T Consensus 79 ~~-kEC~~v 86 (281)
T TIGR03876 79 MK-KECQKV 86 (281)
T ss_pred hh-hhheec
Confidence 44 667543
No 51
>KOG3668|consensus
Probab=22.36 E-value=66 Score=28.13 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=21.3
Q ss_pred CCCCCceEEEEecCCCCCccccceeeccc
Q psy5326 92 EDLPTIGGFSWSGHYTWIPIPDFDTRIMN 120 (157)
Q Consensus 92 ~~LPttSVII~FhNEAwStLLRtv~sv~n 120 (157)
.-||..+.+ +|.|||.+-.++.+.+-|
T Consensus 75 ~l~Pk~al~--v~EesWNAYPy~rT~yTn 101 (269)
T KOG3668|consen 75 SLLPKGALI--VHEESWNAYPYTRTRYTN 101 (269)
T ss_pred HhCCccceE--EeeecccccceEEEEEec
Confidence 567777655 599999999988777777
No 52
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=21.18 E-value=14 Score=28.37 Aligned_cols=33 Identities=9% Similarity=-0.186 Sum_probs=23.2
Q ss_pred EEEEecCCCCCccccceeecccCC-----CC---CCCCCCCC
Q psy5326 99 GFSWSGHYTWIPIPDFDTRIMNNP-----TD---PVPPDFKN 132 (157)
Q Consensus 99 VII~FhNEAwStLLRtv~sv~n~p-----~~---~~~dd~s~ 132 (157)
|||..|||+ ..|-+++.++.+.- .. +++||+|.
T Consensus 1 iiip~yN~~-~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~ 41 (211)
T cd04188 1 VVIPAYNEE-KRLPPTLEEAVEYLEERPSFSYEIIVVDDGSK 41 (211)
T ss_pred CEEcccChH-HHHHHHHHHHHHHHhccCCCCEEEEEEeCCCC
Confidence 688999996 66777777777631 12 27888884
No 53
>TIGR00607 rad52 recombination protein rad52. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.16 E-value=60 Score=26.40 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=29.6
Q ss_pred hhccccccccccCCCCCCCCcccc-CCCcchhHHHhhhhhccchhhhhcccCCCCCC
Q psy5326 22 YEGLIKEDEDKIIPGLGENGRAGT-LPGLTNDIITKIMKIEAFNKVLSDHISYTRKI 77 (157)
Q Consensus 22 ~e~~i~~~~~~~~~gpGE~G~~v~-L~~~e~~~~e~~~~~~~FN~~lSDrIsL~Rsl 77 (157)
.++.+.+..-+.++||| |.-|. ++. .+..+..-+-+|||-|-|+-++++...
T Consensus 6 l~~~lgpe~is~R~g~g--g~kv~Yieg--~k~i~lANeiFGFnGWSs~I~~~~vd~ 58 (161)
T TIGR00607 6 LRQKLGPEYISSRSGGG--GQKVCYIEG--WKVINLANEIFGYNGWSHSITQQNVDF 58 (161)
T ss_pred hhcccCchheeeccCCC--CceEEeccH--HHHHHHHHHhcCCCCceeeeeecccce
Confidence 34444444444455555 45443 322 223344445679999999998886543
Done!