RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5326
(157 letters)
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase;
HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 63.6 bits (154), Expect = 9e-13
Identities = 16/67 (23%), Positives = 25/67 (37%)
Query: 31 DKIIPGLGENGRAGTLPGLTNDIITKIMKIEAFNKVLSDHISYTRKIPDARFPECHELKY 90
D + + + + G FN+V SD + R IPD R +C ++
Sbjct: 2 DALKVRWPDFNQEAYVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTRHDQCQRKQW 61
Query: 91 DEDLPTI 97
DLP
Sbjct: 62 RVDLPAT 68
Score = 35.1 bits (80), Expect = 0.005
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 93 DLPTIGGFSWSGHYTWIPI-PDFDTRIMNNPTDPVPPDF 130
GGF W+ + W + P+ NP P+
Sbjct: 197 SADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPM 235
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 57.9 bits (139), Expect = 8e-11
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 30 EDKIIPGLGENGRAGTLPGLTNDIITKIMKIEAFNKVLSDHISYTRKIPDARFPECHELK 89
D G GE GR + + + + + FN +SD IS R +PD R P C+ +
Sbjct: 49 RDAQRVGNGEQGRPYPMTDA--ERVDQAYRENGFNIYVSDKISLNRSLPDIRHPNCNSKR 106
Query: 90 YDEDLPTI 97
Y E LP
Sbjct: 107 YLETLPNT 114
Score = 27.9 bits (61), Expect = 1.6
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 95 PTIGGFSWSGHYTWIPIPDFDTRIMNNPTDPVPPDFK 131
G F W +Y IPIP + +P+DP
Sbjct: 250 AMRGAFDWEMYYKRIPIPPELQK--ADPSDPFESPVM 284
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 44.7 bits (105), Expect = 3e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 68 SDHISYTRKIPDARFPECHELKYDEDLPTI 97
S+ I+ R +PD R C Y ++LPT
Sbjct: 2 SEMIALNRSLPDVRLEGCKTKVYPDNLPTT 31
Score = 29.7 bits (66), Expect = 0.39
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 93 DLPTIGGFSWSGHYTWIPIP-DFDTRIMNNPTDPVPPD 129
T GGF+W ++ W P+P R + T PV
Sbjct: 165 SDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTP 202
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.003
Identities = 31/153 (20%), Positives = 49/153 (32%), Gaps = 60/153 (39%)
Query: 40 NGR-----AG---TLPGLTNDIITKIMKIEAFNKVLSDHISYT-RKI-PDARF-----PE 84
NG +G +L GL + K +A + + I ++ RK+ RF P
Sbjct: 372 NGAKNLVVSGPPQSLYGLN----LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP- 426
Query: 85 CHELKY--------DEDLPTIGGFSWSGHYTWIPIPDFDT------RIMNNP-------- 122
H ++DL S++ IP+ +DT R+++
Sbjct: 427 FHS-HLLVPASDLINKDLVK-NNVSFNAKDIQIPV--YDTFDGSDLRVLSGSISERIVDC 482
Query: 123 --TDPVPPDFKNLEHPPIKCITFTPTPLEKILD 153
PV E F T ILD
Sbjct: 483 IIRLPV-----KWE----TTTQFKAT---HILD 503
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.62
Identities = 22/158 (13%), Positives = 39/158 (24%), Gaps = 38/158 (24%)
Query: 1 MHLVYFKIPDNKLSTQDLHAR----YEGLIKEDEDKIIP----------------GLGEN 40
+ +Y ++ + LH Y D D +IP +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 41 GRAGTLPGLTND---IITKIMK-------IEAFNKVLSDHISYTRKIPDARFPECHELKY 90
R + D + KI + L Y I D ++ KY
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD------NDPKY 541
Query: 91 DEDLPTIGGFSWSGHYTWIPIPDFDT--RIMNNPTDPV 126
+ + I F I D + + +
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 26.0 bits (57), Expect = 6.2
Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 9/123 (7%)
Query: 16 QDLHARYEGLIKEDEDKIIPGLGENGRAGTLPGLTNDIITKIMKIEAFNKVLSDHISY-- 73
+L GL D ++ G + L + N + + ++ + +
Sbjct: 130 SNLVPSLLGLCMID---VVEGTAMDA----LNSMQNFLRGRPKTFKSLENAIEWSVKSGQ 182
Query: 74 TRKIPDARFPECHELKYDEDLPTIGGFSWSGHYTWIPIPDFDTRIMNNPTDPVPPDFKNL 133
R + AR ++K E + + G YTW + + + F +
Sbjct: 183 IRNLESARVSMVGQVKQCEGITSPEGSKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSC 242
Query: 134 EHP 136
P
Sbjct: 243 PIP 245
>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold,
structural genomics, J center for structural genomics,
JCSG; 1.90A {Arthrobacter SP}
Length = 188
Score = 25.5 bits (55), Expect = 8.9
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 71 ISYTRKIPDARFPE-CHELKYDEDLPTIGGFS---WSGHYTWIPIPDFDTRIMN--NPT- 123
++ + D P + + LP ++ + + +P F + N T
Sbjct: 33 VTCKALLLDDVAPRTSKAVW--DALPQSSQVFHGKYARNEIYNLVPAFAPKEPGAENTTV 90
Query: 124 DPVPPD 129
P+P D
Sbjct: 91 TPIPGD 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.142 0.451
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,688,352
Number of extensions: 162893
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 19
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)