RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5326
         (157 letters)



>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
          N-acetylgalactosaminyltransferase 1, N-terminal domain
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 75 RKIPDARFPECHELKYDEDLPTI 97
          R +PD R   C    Y ++LPT 
Sbjct: 2  RSLPDVRLEGCKTKVYPDNLPTT 24


>d2qgma1 c.150.1.3 (A:33-445) Succinoglycan biosynthesis protein
           BC3205 {Bacillus cereus [TaxId: 1396]}
          Length = 413

 Score = 27.6 bits (61), Expect = 0.75
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 89  KYDEDLPTIGGFSWSGHYTWIPIPDFDTRIMNNPTDPVPPDFKNLEH 135
           + D +  TIG  +  G++T     +  T       D +P D K+  +
Sbjct: 299 RLDNNYVTIGSTTTEGNFTLYSEYNPSTGGKITT-DTIPQDVKSFNY 344


>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
           and C-terminal domains {Thermus thermophilus [TaxId:
           274]}
          Length = 318

 Score = 26.0 bits (56), Expect = 2.3
 Identities = 10/90 (11%), Positives = 21/90 (23%), Gaps = 5/90 (5%)

Query: 40  NGRAGTLPGLTNDIITKIMKIEAFNKVLSDHIS-----YTRKIPDARFPECHELKYDEDL 94
           +     LPGL  D       ++A        +          +           +  E L
Sbjct: 35  HAEGDLLPGLVVDYYAGHAVVQATAHAWEGLLPQVAEALRPHVQSVLAKNDARTRELEGL 94

Query: 95  PTIGGFSWSGHYTWIPIPDFDTRIMNNPTD 124
           P             + + +   R + +   
Sbjct: 95  PLYVRPLLGEVPERVQVQEGRVRYLVDLRA 124


>d3b55a1 c.150.1.3 (A:40-442) Succinoglycan biosynthesis protein
           BC3120 {Bacillus cereus [TaxId: 1396]}
          Length = 403

 Score = 24.9 bits (54), Expect = 5.6
 Identities = 9/76 (11%), Positives = 17/76 (22%), Gaps = 10/76 (13%)

Query: 66  VLSDHISYTRKIPDARFPECHEL------KYDEDLPTIGGFSWSGHYTWIPIPDFDTRIM 119
           ++  H  +  K     F             Y +   +IG   + G Y             
Sbjct: 263 IVWGHNGHVSKTNMLSFIYPKVAGQHLAEYYGKRYVSIGTSVYEGQYNVKNSDGEFGPYG 322

Query: 120 NNPTDPVPPDFKNLEH 135
                    D  +  +
Sbjct: 323 TLK----SDDPNSYNY 334


>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase
           bromodomain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 23.8 bits (51), Expect = 8.4
 Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 8/70 (11%)

Query: 73  YTRKIPDARFPECHEL-KYDEDLPTIGGFSWSGHYTWIPIPDFDTRIM-------NNPTD 124
           +   +     P  +E+ ++  DL T+     + +Y    +   D + +       N P  
Sbjct: 34  FMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPES 93

Query: 125 PVPPDFKNLE 134
                   LE
Sbjct: 94  EYYKCANILE 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 684,784
Number of extensions: 34085
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 8
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.0 bits)