BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5328
         (76 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide
          Alpha-N- Acetylgalactosaminyltransferase-T1
          Length = 472

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 9  CHELKYDEDLPTVSVIIIFTNEAWSPXXXXXXXXXXXXPDKLLHEVLLIDDASDK 63
          C    Y ++LPT SV+I+F NEAWS             P  ++ E++L+DDAS++
Sbjct: 19 CKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASER 73


>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
           Mn2+
 pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
           Galnac-ser On Lectin Domain
          Length = 570

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 9   CHELKYDEDLPTVSVIIIFTNEAWSPXXXXXXXXXXXXPDKLLHEVLLIDDASDK 63
           C+  +Y E LP  S+II F NE WS             P +L+ E++L+DD SD+
Sbjct: 102 CNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDR 156


>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
           And Ea2
 pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
 pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
          Length = 501

 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 28/55 (50%)

Query: 8   RCHELKYDEDLPTVSVIIIFTNEAWSPXXXXXXXXXXXXPDKLLHEVLLIDDASD 62
           +C   ++  DLP  SV+I F NEA S             P  L+ E++L+DD S+
Sbjct: 55  QCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSN 109


>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
           The Tpr Domain Of Human Pex5p
 pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
           The Tpr Domain Of Human Pex5p
          Length = 328

 Score = 25.4 bits (54), Expect = 9.0,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 5   SLLRCHELKYDEDLPTVSVIIIFTNEA 31
           +L RC ELK D     +++ + FTNE+
Sbjct: 80  ALRRCLELKPDNQTALMALAVSFTNES 106


>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
 pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
          Length = 328

 Score = 25.4 bits (54), Expect = 9.0,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 5   SLLRCHELKYDEDLPTVSVIIIFTNEA 31
           +L RC ELK D     +++ + FTNE+
Sbjct: 80  ALRRCLELKPDNQTALMALAVSFTNES 106


>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
          Length = 305

 Score = 25.4 bits (54), Expect = 9.2,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 5  SLLRCHELKYDEDLPTVSVIIIFTNEA 31
          +L RC ELK D     +++ + FTNE+
Sbjct: 57 ALRRCLELKPDNQTALMALAVSFTNES 83


>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
 pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
 pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
 pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
          Length = 319

 Score = 25.4 bits (54), Expect = 9.6,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 5  SLLRCHELKYDEDLPTVSVIIIFTNEA 31
          +L RC ELK D     +++ + FTNE+
Sbjct: 71 ALRRCLELKPDNQTALMALAVSFTNES 97


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.140    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,004,233
Number of Sequences: 62578
Number of extensions: 48767
Number of successful extensions: 42
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 8
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)