Query psy5328
Match_columns 76
No_of_seqs 150 out of 1079
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 23:48:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3738|consensus 99.8 2.7E-19 5.9E-24 133.8 4.8 74 1-74 106-179 (559)
2 KOG3737|consensus 99.7 7.7E-18 1.7E-22 126.2 5.3 71 1-71 137-207 (603)
3 KOG3736|consensus 99.6 1E-16 2.3E-21 123.4 1.7 71 1-71 123-194 (578)
4 COG0463 WcaA Glycosyltransfera 99.5 1.9E-14 4.2E-19 87.3 5.5 51 18-71 2-52 (291)
5 PRK10073 putative glycosyl tra 99.4 9.2E-13 2E-17 94.7 6.2 49 18-69 5-53 (328)
6 cd02520 Glucosylceramide_synth 99.4 1.1E-12 2.4E-17 86.5 5.6 48 19-69 1-48 (196)
7 cd06427 CESA_like_2 CESA_like_ 99.4 1.3E-12 2.8E-17 88.5 5.9 50 19-69 1-50 (241)
8 cd06421 CESA_CelA_like CESA_Ce 99.3 3.1E-12 6.6E-17 84.8 5.6 52 19-70 1-52 (234)
9 TIGR03469 HonB hopene-associat 99.3 4.6E-12 1E-16 92.3 6.6 51 16-68 37-87 (384)
10 cd06437 CESA_CaSu_A2 Cellulose 99.3 5E-12 1.1E-16 84.8 6.0 49 19-69 1-49 (232)
11 cd04184 GT2_RfbC_Mx_like Myxoc 99.3 1E-11 2.2E-16 80.8 5.7 51 19-71 1-51 (202)
12 TIGR03111 glyc2_xrt_Gpos1 puta 99.3 1.3E-11 2.7E-16 91.6 6.6 52 16-68 46-97 (439)
13 PRK10018 putative glycosyl tra 99.3 1.2E-11 2.7E-16 87.7 6.2 44 17-63 3-46 (279)
14 PRK13915 putative glucosyl-3-p 99.3 9.1E-12 2E-16 89.2 5.3 53 16-69 28-80 (306)
15 PRK10063 putative glycosyl tra 99.2 1.4E-11 3E-16 85.5 5.9 50 19-69 1-51 (248)
16 cd04196 GT_2_like_d Subfamily 99.2 1.2E-11 2.7E-16 80.5 5.3 45 22-69 1-45 (214)
17 PTZ00260 dolichyl-phosphate be 99.2 1.3E-11 2.8E-16 89.1 5.8 53 16-69 67-125 (333)
18 PRK10714 undecaprenyl phosphat 99.2 1.4E-11 3E-16 88.6 5.8 51 17-69 4-56 (325)
19 PLN02726 dolichyl-phosphate be 99.2 1.9E-11 4.1E-16 83.2 5.8 53 16-69 6-58 (243)
20 cd02510 pp-GalNAc-T pp-GalNAc- 99.2 1.4E-11 3E-16 86.2 5.1 50 22-71 1-50 (299)
21 cd06439 CESA_like_1 CESA_like_ 99.2 3.1E-11 6.8E-16 81.3 6.6 54 16-70 26-79 (251)
22 TIGR03472 HpnI hopanoid biosyn 99.2 8.5E-11 1.8E-15 85.3 6.7 49 16-67 38-86 (373)
23 PRK14583 hmsR N-glycosyltransf 99.1 8.1E-11 1.7E-15 87.2 6.0 50 17-69 73-122 (444)
24 cd06435 CESA_NdvC_like NdvC_li 99.1 5.5E-11 1.2E-15 79.4 4.4 43 22-66 1-43 (236)
25 PF00535 Glycos_transf_2: Glyc 99.1 1.1E-10 2.4E-15 72.2 5.4 47 22-71 1-47 (169)
26 PRK11204 N-glycosyltransferase 99.1 1.2E-10 2.7E-15 84.7 6.2 49 17-68 52-100 (420)
27 cd06438 EpsO_like EpsO protein 99.1 1.3E-10 2.8E-15 75.8 4.5 46 23-69 1-46 (183)
28 cd06433 GT_2_WfgS_like WfgS an 99.1 1.9E-10 4.1E-15 73.7 4.8 45 22-69 1-45 (202)
29 cd06913 beta3GnTL1_like Beta 1 99.1 2.1E-10 4.5E-15 76.3 5.0 43 23-67 1-43 (219)
30 cd06434 GT2_HAS Hyaluronan syn 99.1 3.8E-10 8.3E-15 75.0 6.0 46 20-69 1-46 (235)
31 cd02511 Beta4Glucosyltransfera 99.0 5.2E-10 1.1E-14 75.8 5.4 44 20-69 1-44 (229)
32 TIGR03030 CelA cellulose synth 99.0 5.4E-10 1.2E-14 87.6 6.1 51 16-66 128-178 (713)
33 cd04192 GT_2_like_e Subfamily 99.0 5.6E-10 1.2E-14 73.3 5.1 46 23-69 1-46 (229)
34 cd04190 Chitin_synth_C C-termi 99.0 3.7E-10 8E-15 77.4 4.0 42 23-64 1-50 (244)
35 cd04195 GT2_AmsE_like GT2_AmsE 99.0 5.3E-10 1.1E-14 72.8 4.4 46 22-69 1-47 (201)
36 cd06436 GlcNAc-1-P_transferase 99.0 5.8E-10 1.2E-14 73.6 4.6 44 23-70 1-44 (191)
37 cd02525 Succinoglycan_BP_ExoA 99.0 1.4E-09 3E-14 72.3 6.0 49 20-69 1-49 (249)
38 cd02522 GT_2_like_a GT_2_like_ 99.0 1.1E-09 2.3E-14 72.1 5.4 46 21-69 1-46 (221)
39 cd04188 DPG_synthase DPG_synth 99.0 5.4E-10 1.2E-14 74.0 3.8 46 23-69 1-48 (211)
40 COG1215 Glycosyltransferases, 99.0 1.1E-09 2.3E-14 79.1 5.4 52 18-71 53-104 (439)
41 cd06442 DPM1_like DPM1_like re 99.0 1.1E-09 2.4E-14 72.2 4.7 44 23-68 1-44 (224)
42 PRK11498 bcsA cellulose syntha 98.9 1.6E-09 3.5E-14 86.9 6.0 51 17-67 258-308 (852)
43 cd06423 CESA_like CESA_like is 98.9 1.8E-09 4E-14 66.4 4.0 46 23-71 1-46 (180)
44 cd04185 GT_2_like_b Subfamily 98.9 3.1E-09 6.7E-14 69.5 5.1 44 23-69 1-44 (202)
45 cd06420 GT2_Chondriotin_Pol_N 98.9 3.4E-09 7.5E-14 67.8 4.8 42 23-67 1-42 (182)
46 KOG2978|consensus 98.7 1.5E-08 3.3E-13 70.4 4.7 49 18-68 2-52 (238)
47 cd04179 DPM_DPG-synthase_like 98.7 1.6E-08 3.5E-13 64.7 4.4 46 23-69 1-46 (185)
48 cd04187 DPM1_like_bac Bacteria 98.7 1.5E-08 3.4E-13 65.3 4.2 43 23-68 1-46 (181)
49 KOG2977|consensus 98.7 3.5E-08 7.6E-13 71.6 4.8 52 20-71 68-124 (323)
50 PF13641 Glyco_tranf_2_3: Glyc 98.7 8.8E-09 1.9E-13 68.3 1.4 46 19-67 1-46 (228)
51 cd04186 GT_2_like_c Subfamily 98.6 6.6E-08 1.4E-12 60.2 4.6 45 23-70 1-45 (166)
52 PRK14716 bacteriophage N4 adso 98.6 1.5E-07 3.2E-12 72.1 6.4 51 16-69 63-114 (504)
53 cd02526 GT2_RfbF_like RfbF is 98.5 2.3E-07 5E-12 61.7 4.8 41 23-68 1-41 (237)
54 cd04191 Glucan_BSP_ModH Glucan 98.2 2.5E-06 5.5E-11 59.8 4.8 44 21-65 1-48 (254)
55 PRK11234 nfrB bacteriophage N4 98.1 7.4E-06 1.6E-10 65.2 6.1 50 16-68 60-110 (727)
56 PRK05454 glucosyltransferase M 98.1 8.8E-06 1.9E-10 64.4 6.3 50 17-67 122-175 (691)
57 COG1216 Predicted glycosyltran 98.1 1E-05 2.2E-10 57.3 5.9 49 18-69 2-50 (305)
58 PF10111 Glyco_tranf_2_2: Glyc 97.9 1.2E-05 2.5E-10 56.5 4.0 43 22-65 1-48 (281)
59 cd00761 Glyco_tranf_GTA_type G 97.9 2E-05 4.3E-10 47.2 4.5 46 23-71 1-46 (156)
60 PRK15489 nfrB bacteriophage N4 97.8 3.1E-05 6.8E-10 61.6 4.5 51 17-70 69-123 (703)
61 TIGR01556 rhamnosyltran L-rham 97.5 0.00015 3.3E-09 50.1 4.5 40 27-71 2-42 (281)
62 cd02514 GT13_GLCNAC-TI GT13_GL 97.3 0.00042 9.2E-09 51.0 4.7 48 21-69 2-49 (334)
63 PF13704 Glyco_tranf_2_4: Glyc 96.8 0.0027 5.8E-08 37.6 4.1 38 28-70 1-38 (97)
64 PF13733 Glyco_transf_7N: N-te 95.2 0.047 1E-06 35.9 4.5 50 4-61 38-89 (136)
65 KOG3916|consensus 95.0 0.05 1.1E-06 40.8 4.6 54 3-64 141-196 (372)
66 PF03142 Chitin_synth_2: Chiti 93.4 0.28 6.1E-06 38.4 6.0 40 21-60 27-66 (527)
67 PF01793 Glyco_transf_15: Glyc 85.1 2.1 4.6E-05 31.7 4.7 53 18-70 54-106 (328)
68 PF03071 GNT-I: GNT-I family; 83.7 2.2 4.7E-05 32.8 4.3 50 18-68 92-141 (434)
69 cd00899 b4GalT Beta-4-Galactos 83.3 2.5 5.5E-05 29.6 4.2 37 20-58 3-41 (219)
70 KOG2547|consensus 82.6 5 0.00011 30.8 5.8 50 16-68 82-131 (431)
71 PF06306 CgtA: Beta-1,4-N-acet 80.2 4 8.6E-05 30.6 4.5 46 20-71 88-133 (347)
72 PRK10653 D-ribose transporter 76.8 5.6 0.00012 27.3 4.2 57 8-68 16-73 (295)
73 PF09488 Osmo_MPGsynth: Mannos 75.5 9.2 0.0002 29.1 5.3 37 20-62 51-87 (381)
74 PF04123 DUF373: Domain of unk 72.7 4.5 9.8E-05 30.2 3.1 31 33-66 84-114 (344)
75 COG5020 KTR1 Mannosyltransfera 67.8 10 0.00022 29.0 4.1 51 19-69 81-131 (399)
76 KOG4472|consensus 67.8 10 0.00022 29.0 4.1 51 19-69 81-131 (399)
77 cd06431 GT8_LARGE_C LARGE cata 67.6 17 0.00038 25.9 5.1 50 20-72 2-51 (280)
78 PLN02190 cellulose synthase-li 65.1 15 0.00033 30.2 4.8 55 17-71 91-148 (756)
79 KOG1111|consensus 64.9 11 0.00024 28.9 3.8 43 27-72 205-247 (426)
80 PF02598 Methyltrn_RNA_3: Puta 64.4 2.9 6.2E-05 30.3 0.6 40 20-59 1-44 (291)
81 TIGR02460 osmo_MPGsynth mannos 61.1 22 0.00047 27.1 4.7 37 20-62 51-87 (381)
82 PRK14503 mannosyl-3-phosphogly 58.6 25 0.00055 26.8 4.7 37 20-62 52-88 (393)
83 PF15224 SCRG1: Scrapie-respon 57.5 7.8 0.00017 22.9 1.5 12 19-30 67-78 (78)
84 cd01537 PBP1_Repressors_Sugar_ 56.2 24 0.00053 22.7 3.9 42 21-66 2-44 (264)
85 PF03452 Anp1: Anp1; InterPro 54.2 29 0.00063 25.1 4.3 53 17-70 23-77 (269)
86 KOG1476|consensus 53.7 37 0.0008 25.4 4.8 50 18-70 86-137 (330)
87 PF13768 VWA_3: von Willebrand 48.7 30 0.00066 21.5 3.4 39 33-71 78-117 (155)
88 COG2237 Predicted membrane pro 46.7 28 0.00061 26.4 3.3 31 33-66 84-114 (364)
89 cd06273 PBP1_GntR_like_1 This 45.0 44 0.00096 22.0 3.9 37 21-61 2-39 (268)
90 PF13712 Glyco_tranf_2_5: Glyc 44.3 38 0.00083 23.1 3.5 36 21-60 1-36 (217)
91 COG2943 MdoH Membrane glycosyl 42.5 57 0.0012 26.6 4.6 44 20-64 145-191 (736)
92 PF11735 CAP59_mtransfer: Cryp 42.1 1.2E+02 0.0026 21.4 5.9 46 22-68 3-51 (241)
93 PRK14502 bifunctional mannosyl 41.4 62 0.0013 26.6 4.7 37 20-62 56-92 (694)
94 cd01574 PBP1_LacI Ligand-bindi 40.3 75 0.0016 20.8 4.4 37 21-61 2-39 (264)
95 cd00218 GlcAT-I Beta1,3-glucur 39.5 76 0.0017 22.4 4.5 49 19-71 1-52 (223)
96 cd01536 PBP1_ABC_sugar_binding 38.6 51 0.0011 21.4 3.4 38 21-62 2-40 (267)
97 cd06296 PBP1_CatR_like Ligand- 38.1 74 0.0016 20.9 4.1 36 21-60 2-38 (270)
98 cd06280 PBP1_LacI_like_4 Ligan 37.1 67 0.0014 21.2 3.8 38 21-62 2-40 (263)
99 cd06281 PBP1_LacI_like_5 Ligan 37.1 82 0.0018 20.9 4.2 36 21-60 2-38 (269)
100 COG2106 Uncharacterized conser 36.0 72 0.0016 23.3 4.0 25 52-76 41-69 (272)
101 PF01644 Chitin_synth_1: Chiti 35.8 31 0.00067 23.2 2.0 19 27-45 1-19 (163)
102 KOG1413|consensus 34.5 89 0.0019 24.0 4.4 52 17-69 65-116 (411)
103 cd06292 PBP1_LacI_like_10 Liga 34.4 1.1E+02 0.0023 20.3 4.4 35 21-59 2-37 (273)
104 PF09151 DUF1936: Domain of un 32.5 26 0.00056 17.7 0.9 12 20-31 8-19 (36)
105 PLN02893 Cellulose synthase-li 31.1 1E+02 0.0022 25.5 4.5 56 16-71 98-156 (734)
106 KOG2733|consensus 28.2 1.2E+02 0.0026 23.4 4.2 53 17-71 30-82 (423)
107 PF08400 phage_tail_N: Prophag 28.0 52 0.0011 21.5 2.0 21 53-73 73-93 (134)
108 PRK11041 DNA-binding transcrip 27.9 1.4E+02 0.0029 20.3 4.2 37 19-59 36-73 (309)
109 cd06284 PBP1_LacI_like_6 Ligan 27.9 1.3E+02 0.0028 19.6 4.0 36 21-60 2-38 (267)
110 cd06320 PBP1_allose_binding Pe 27.8 81 0.0018 20.9 3.0 33 21-57 2-35 (275)
111 PLN02458 transferase, transfer 27.5 2E+02 0.0043 21.8 5.1 51 18-71 111-164 (346)
112 PF06490 FleQ: Flagellar regul 27.1 1.1E+02 0.0024 18.5 3.3 40 34-76 55-94 (109)
113 COG1926 Predicted phosphoribos 26.9 38 0.00083 24.0 1.3 13 52-64 125-137 (220)
114 cd01391 Periplasmic_Binding_Pr 26.9 96 0.0021 19.5 3.1 42 21-64 2-45 (269)
115 cd06294 PBP1_ycjW_transcriptio 26.8 1.4E+02 0.0031 19.5 4.0 11 34-44 21-31 (270)
116 cd00505 Glyco_transf_8 Members 26.3 2.1E+02 0.0046 19.3 4.9 41 23-65 3-44 (246)
117 cd01542 PBP1_TreR_like Ligand- 25.9 1.6E+02 0.0034 19.2 4.1 25 21-45 2-27 (259)
118 PRK07399 DNA polymerase III su 25.9 1.7E+02 0.0037 21.1 4.6 61 16-76 67-151 (314)
119 PF01501 Glyco_transf_8: Glyco 25.2 1.8E+02 0.0038 18.9 4.2 43 27-69 5-48 (250)
120 PF14581 SseB_C: SseB protein 24.8 1.6E+02 0.0035 17.5 5.5 53 16-70 46-99 (108)
121 PF02364 Glucan_synthase: 1,3- 24.8 26 0.00057 29.2 0.2 16 16-31 31-46 (817)
122 cd01538 PBP1_ABC_xylose_bindin 24.7 1.4E+02 0.0029 20.3 3.7 36 21-60 2-38 (288)
123 TIGR00678 holB DNA polymerase 24.5 2E+02 0.0044 18.4 4.7 40 37-76 82-123 (188)
124 COG0350 Ada Methylated DNA-pro 24.4 38 0.00082 22.5 0.9 10 20-29 132-141 (168)
125 PRK10401 DNA-binding transcrip 24.3 1.6E+02 0.0034 20.6 4.0 40 19-62 60-100 (346)
126 PF09258 Glyco_transf_64: Glyc 23.8 1.9E+02 0.0042 20.1 4.4 35 22-60 2-37 (247)
127 PLN02692 alpha-galactosidase 23.2 82 0.0018 24.2 2.5 28 34-61 74-101 (412)
128 smart00333 TUDOR Tudor domain. 23.2 87 0.0019 16.2 2.0 23 51-73 31-53 (57)
129 cd06325 PBP1_ABC_uncharacteriz 23.0 1.6E+02 0.0034 19.5 3.7 43 21-63 2-46 (281)
130 COG4092 Predicted glycosyltran 22.8 2E+02 0.0043 21.6 4.3 11 18-28 1-11 (346)
131 PF10613 Lig_chan-Glu_bd: Liga 22.6 1.2E+02 0.0026 17.2 2.6 22 34-60 24-45 (65)
132 cd06288 PBP1_sucrose_transcrip 21.9 2E+02 0.0044 18.7 4.1 36 21-60 2-39 (269)
133 PF04666 Glyco_transf_54: N-Ac 21.8 1.5E+02 0.0032 21.6 3.6 30 20-49 53-83 (297)
134 cd06319 PBP1_ABC_sugar_binding 21.6 1.6E+02 0.0034 19.4 3.5 36 21-60 2-38 (277)
135 KOG3925|consensus 21.0 1.3E+02 0.0029 22.9 3.2 9 51-59 104-112 (371)
136 cd06321 PBP1_ABC_sugar_binding 21.0 1.7E+02 0.0037 19.3 3.5 37 21-59 2-39 (271)
137 COG0503 Apt Adenine/guanine ph 20.9 35 0.00076 22.8 0.2 21 53-73 118-139 (179)
138 PRK07993 DNA polymerase III su 20.2 99 0.0021 22.6 2.4 60 17-76 72-135 (334)
139 cd06285 PBP1_LacI_like_7 Ligan 20.1 2.5E+02 0.0055 18.4 4.2 25 21-45 2-27 (265)
140 smart00039 CRF corticotropin-r 20.0 28 0.0006 18.3 -0.4 11 18-28 2-12 (40)
No 1
>KOG3738|consensus
Probab=99.77 E-value=2.7e-19 Score=133.82 Aligned_cols=74 Identities=38% Similarity=0.671 Sum_probs=69.9
Q ss_pred CCCcCcccccccccCCCCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcccCC
Q psy5328 1 MVGHSLLRCHELKYDEDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQPLN 74 (76)
Q Consensus 1 ~~d~R~~~c~~~~y~~~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~~~~ 74 (76)
|||+||+.|....|...+|..||||.|||||-++|+|++.||++++|.++..|||+|||+|.|.+..+.|.+|.
T Consensus 106 i~dtRh~qC~~~~y~~dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dped~~~L~ri~ 179 (559)
T KOG3738|consen 106 IPDTRHPQCRDVDYKVDLPPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPEDGKLLKRIP 179 (559)
T ss_pred cccccccccccceeecCCCCceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChHHHHHHhhhh
Confidence 79999999999999999999999999999998999999999999999999999999999999999888877653
No 2
>KOG3737|consensus
Probab=99.71 E-value=7.7e-18 Score=126.22 Aligned_cols=71 Identities=39% Similarity=0.663 Sum_probs=68.6
Q ss_pred CCCcCcccccccccCCCCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcc
Q psy5328 1 MVGHSLLRCHELKYDEDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 1 ~~d~R~~~c~~~~y~~~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
++|+|++.|+...|+..+|+.||||.||||.|++|.|+++||+.++|..++.|||+|||.|+.+.|+++|+
T Consensus 137 v~D~R~EECkhWdYpe~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLD 207 (603)
T KOG3737|consen 137 VNDLRQEECKHWDYPENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLD 207 (603)
T ss_pred ccccCHhhccccCCcccCCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999989999999999999999999887
No 3
>KOG3736|consensus
Probab=99.62 E-value=1e-16 Score=123.36 Aligned_cols=71 Identities=42% Similarity=0.677 Sum_probs=64.4
Q ss_pred CCCcCcccccc-cccCCCCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcc
Q psy5328 1 MVGHSLLRCHE-LKYDEDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 1 ~~d~R~~~c~~-~~y~~~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
+||+|+..|.. +.|...+|+.||||+||||++++|+|+++|++++++..++.|||+|||+|+...++..++
T Consensus 123 l~D~r~~~C~~~~~~~~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld 194 (578)
T KOG3736|consen 123 LPDLRHPECKKLKYYSDKLPTTSVIIIFHNEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLE 194 (578)
T ss_pred CcchhchhhhhccccccccCCCceEEEEecCCCcchhheEEeehccCChhHeEEEEEeecCcchhhhhhhhH
Confidence 59999999988 566677999999999999999999999999999999988999999999999998765543
No 4
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=1.9e-14 Score=87.25 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=44.9
Q ss_pred CCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcc
Q psy5328 18 LPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 18 ~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
+|.+|||||+||++ ..|.++|.|+++|+... +|||+|||||+|+|.....+
T Consensus 2 ~~~~siiip~~n~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~~~~~ 52 (291)
T COG0463 2 MPKVSVVIPTYNEE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTEIAIE 52 (291)
T ss_pred CccEEEEEeccchh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHHHHHH
Confidence 57899999999998 79999999999998764 69999999999999755443
No 5
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.38 E-value=9.2e-13 Score=94.73 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=43.7
Q ss_pred CCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 18 LPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 18 ~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
+|.+|||||+||++ ..|.++|.|+++|+... +|||+|||||+|+|.+..
T Consensus 5 ~p~vSVIIP~yN~~-~~L~~~l~Sl~~Qt~~~--~EIIiVdDgStD~t~~i~ 53 (328)
T PRK10073 5 TPKLSIIIPLYNAG-KDFRAFMESLIAQTWTA--LEIIIVNDGSTDNSVEIA 53 (328)
T ss_pred CCeEEEEEeccCCH-HHHHHHHHHHHhCCCCC--eEEEEEeCCCCccHHHHH
Confidence 57899999999997 79999999999998764 699999999999997544
No 6
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.37 E-value=1.1e-12 Score=86.47 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=42.2
Q ss_pred CcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 19 PTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 19 p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
|.+|||||+|||+ ..|.++|.|+++|+++. +|||+|||||+|+|++.+
T Consensus 1 p~vsviip~~n~~-~~l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~ 48 (196)
T cd02520 1 PGVSILKPLCGVD-PNLYENLESFFQQDYPK--YEILFCVQDEDDPAIPVV 48 (196)
T ss_pred CCeEEEEecCCCC-ccHHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHH
Confidence 5799999999998 57999999999998764 799999999999997543
No 7
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.36 E-value=1.3e-12 Score=88.51 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=43.9
Q ss_pred CcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 19 PTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 19 p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
|.+|||||+|||+ ..|.++|.|+++++++...+|||+|||||+|+|.+.+
T Consensus 1 p~vsIiIp~~Ne~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~ 50 (241)
T cd06427 1 PVYTILVPLYKEA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAA 50 (241)
T ss_pred CeEEEEEecCCcH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHH
Confidence 6799999999997 6999999999998876435799999999999998654
No 8
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.32 E-value=3.1e-12 Score=84.76 Aligned_cols=52 Identities=23% Similarity=0.136 Sum_probs=43.5
Q ss_pred CcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhc
Q psy5328 19 PTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFR 70 (76)
Q Consensus 19 p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~ 70 (76)
|.+|||||+|||+...|.++|.|+++|+++...+|||+|||||+|+|.+.+.
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~ 52 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAA 52 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHH
Confidence 6799999999986457889999999998764337999999999999875443
No 9
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.31 E-value=4.6e-12 Score=92.34 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=44.5
Q ss_pred CCCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHh
Q psy5328 16 EDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGA 68 (76)
Q Consensus 16 ~~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~ 68 (76)
...|.+|||||+|||+ ..|.+++.|+++|+++. .+|||+|||||+|+|.+.
T Consensus 37 ~~~p~VSVIIpa~Ne~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i 87 (384)
T TIGR03469 37 EAWPAVVAVVPARNEA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADI 87 (384)
T ss_pred CCCCCEEEEEecCCcH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHH
Confidence 3568899999999998 79999999999998763 379999999999999654
No 10
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.31 E-value=5e-12 Score=84.79 Aligned_cols=49 Identities=27% Similarity=0.162 Sum_probs=42.0
Q ss_pred CcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 19 PTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 19 p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
|.+|||||+|||+ ..|.++|.|+++|+++...+|||+||| |+|+|+...
T Consensus 1 p~vSViIp~yNe~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~ 49 (232)
T cd06437 1 PMVTVQLPVFNEK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLA 49 (232)
T ss_pred CceEEEEecCCcH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHH
Confidence 5799999999997 699999999999887644579999998 999997554
No 11
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.27 E-value=1e-11 Score=80.80 Aligned_cols=51 Identities=24% Similarity=0.216 Sum_probs=43.4
Q ss_pred CcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcc
Q psy5328 19 PTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 19 p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
|.+|||||+||++++.|.++|.|+++|+... +|||+|||||+|++.+...+
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~d~~~~~~~~ 51 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPN--WELCIADDASTDPEVKRVLK 51 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCCChHHHHHHH
Confidence 5799999999997568999999999998653 69999999999987765443
No 12
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.26 E-value=1.3e-11 Score=91.61 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=45.9
Q ss_pred CCCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHh
Q psy5328 16 EDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGA 68 (76)
Q Consensus 16 ~~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~ 68 (76)
...|.+|||||+|||+ ..|.++|.|+.+|+++....||++|||||+|+|.+.
T Consensus 46 ~~~P~vsVIIP~yNe~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~i 97 (439)
T TIGR03111 46 GKLPDITIIIPVYNSE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQV 97 (439)
T ss_pred CCCCCEEEEEEeCCCh-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHH
Confidence 4578999999999998 799999999999987754579999999999999654
No 13
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.26 E-value=1.2e-11 Score=87.68 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=39.6
Q ss_pred CCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCC
Q psy5328 17 DLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDK 63 (76)
Q Consensus 17 ~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D 63 (76)
..|.+|||||+||++ ..|.++|.|+++|+++. +|||+|||||+|
T Consensus 3 ~~p~VSVIip~yN~~-~~l~~~l~Svl~Qt~~~--~EiIVVDDgS~~ 46 (279)
T PRK10018 3 DNPLISIYMPTWNRQ-QLAIRAIKSVLRQDYSN--WEMIIVDDCSTS 46 (279)
T ss_pred CCCEEEEEEEeCCCH-HHHHHHHHHHHhCCCCC--eEEEEEECCCCC
Confidence 468899999999997 68899999999998764 799999999996
No 14
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.25 E-value=9.1e-12 Score=89.24 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=43.2
Q ss_pred CCCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 16 EDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 16 ~~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
...|.+|||||+|||+ ..|.++|.++.++......+|||+|||||+|+|.+..
T Consensus 28 ~~~~~vSVVIPayNee-~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia 80 (306)
T PRK13915 28 KAGRTVSVVLPALNEE-ETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERA 80 (306)
T ss_pred cCCCCEEEEEecCCcH-HHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHH
Confidence 3567899999999997 6899999999887642234699999999999997543
No 15
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.25 E-value=1.4e-11 Score=85.51 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=40.0
Q ss_pred CcEEEEEeeecCCchHHHHHHHHHHhhCCC-CCceEEEEEeCCCCCcchHhh
Q psy5328 19 PTVSVIIIFTNEAWSPLIRTILTTLMRTPD-KLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 19 p~vSVVip~~NE~~~~L~~~l~svl~~~~~-~~~~EiI~VDDgS~D~tl~~~ 69 (76)
|.+|||||+||++ ..|.+++.|+.++... ...+|||+|||||+|+|.+.+
T Consensus 1 ~~vSVIi~~yN~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~ 51 (248)
T PRK10063 1 MLLSVITVAFRNL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFL 51 (248)
T ss_pred CeEEEEEEeCCCH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHH
Confidence 5799999999997 6899999999764211 124799999999999997543
No 16
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.25 E-value=1.2e-11 Score=80.51 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=39.9
Q ss_pred EEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 22 SVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 22 SVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
|||||+||++ ..|.++|.|+++|+.+ .+|||+|||||+|+|.+.+
T Consensus 1 sIvIp~yn~~-~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~t~~~~ 45 (214)
T cd04196 1 AVLMATYNGE-KYLREQLDSILAQTYK--NDELIISDDGSTDGTVEII 45 (214)
T ss_pred CEEEEecCcH-HHHHHHHHHHHhCcCC--CeEEEEEeCCCCCCcHHHH
Confidence 6999999998 7999999999999866 4799999999999987543
No 17
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.25 E-value=1.3e-11 Score=89.13 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=40.8
Q ss_pred CCCCcEEEEEeeecCCchHHHHHHHHHHhhCC------CCCceEEEEEeCCCCCcchHhh
Q psy5328 16 EDLPTVSVIIIFTNEAWSPLIRTILTTLMRTP------DKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 16 ~~~p~vSVVip~~NE~~~~L~~~l~svl~~~~------~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
...|.+|||||+|||+ ..|.+.+.++.++.. ....+|||+|||||+|+|.+..
T Consensus 67 ~~~~~isVVIP~yNe~-~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~ 125 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEE-DRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVA 125 (333)
T ss_pred CCCeEEEEEEeeCCCH-HHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHH
Confidence 3466899999999998 578887777765421 1135799999999999998654
No 18
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.24 E-value=1.4e-11 Score=88.64 Aligned_cols=51 Identities=31% Similarity=0.317 Sum_probs=38.8
Q ss_pred CCCcEEEEEeeecCCc--hHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 17 DLPTVSVIIIFTNEAW--SPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 17 ~~p~vSVVip~~NE~~--~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
.++.+|||||+|||+. ..+++.+.+++++... .+|||+|||||+|+|.+..
T Consensus 4 ~~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~--~~EIIvVDDgS~D~T~~il 56 (325)
T PRK10714 4 PIKKVSVVIPVYNEQESLPELIRRTTAACESLGK--EYEILLIDDGSSDNSAEML 56 (325)
T ss_pred CCCeEEEEEcccCchhhHHHHHHHHHHHHHhCCC--CEEEEEEeCCCCCcHHHHH
Confidence 3567999999999983 3445555556666543 4799999999999998664
No 19
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.23 E-value=1.9e-11 Score=83.22 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=38.4
Q ss_pred CCCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 16 EDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 16 ~~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
..+|.+|||||+|||+ ..|...+.++.++......+|||+|||||+|+|.+..
T Consensus 6 ~~~~~vsVvIp~yne~-~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~ 58 (243)
T PLN02726 6 EGAMKYSIIVPTYNER-LNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVV 58 (243)
T ss_pred CCCceEEEEEccCCch-hhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHH
Confidence 3467899999999997 4666665555443221115799999999999997543
No 20
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.23 E-value=1.4e-11 Score=86.20 Aligned_cols=50 Identities=50% Similarity=0.719 Sum_probs=42.9
Q ss_pred EEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcc
Q psy5328 22 SVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 22 SVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
|||||+||++...|.++|.|++++++....+|||+|||||+|+|...+.+
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~ 50 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE 50 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH
Confidence 79999999974699999999999987644569999999999999876643
No 21
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.23 E-value=3.1e-11 Score=81.30 Aligned_cols=54 Identities=24% Similarity=0.227 Sum_probs=45.9
Q ss_pred CCCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhc
Q psy5328 16 EDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFR 70 (76)
Q Consensus 16 ~~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~ 70 (76)
..+|.+|||||+|||+ +.|.++|.|+++|+.+...+|+|+|||||+|+|.+...
T Consensus 26 ~~~~~isVvip~~n~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~ 79 (251)
T cd06439 26 AYLPTVTIIIPAYNEE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAR 79 (251)
T ss_pred CCCCEEEEEEecCCcH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHH
Confidence 5577899999999997 79999999999987764347999999999999876543
No 22
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.16 E-value=8.5e-11 Score=85.35 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=43.7
Q ss_pred CCCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchH
Q psy5328 16 EDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVG 67 (76)
Q Consensus 16 ~~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~ 67 (76)
...|.+|||||+|||+ ..|.++|.|+++|+++. +|||++||+|+|.|.+
T Consensus 38 ~~~p~VSViiP~~nee-~~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~ 86 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDE-PELYENLASFCRQDYPG--FQMLFGVQDPDDPALA 86 (373)
T ss_pred CCCCCeEEEEECCCCC-hhHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHH
Confidence 4468899999999998 68999999999999875 6999999999999864
No 23
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.15 E-value=8.1e-11 Score=87.23 Aligned_cols=50 Identities=28% Similarity=0.297 Sum_probs=43.9
Q ss_pred CCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 17 DLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 17 ~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
..|.+||+||+|||+ ..+.+++.|+++++++. +||++|||||+|+|.+..
T Consensus 73 ~~p~vsViIP~yNE~-~~i~~~l~sll~q~yp~--~eIivVdDgs~D~t~~~~ 122 (444)
T PRK14583 73 GHPLVSILVPCFNEG-LNARETIHAALAQTYTN--IEVIAINDGSSDDTAQVL 122 (444)
T ss_pred CCCcEEEEEEeCCCH-HHHHHHHHHHHcCCCCC--eEEEEEECCCCccHHHHH
Confidence 357899999999997 68999999999998774 699999999999987644
No 24
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.14 E-value=5.5e-11 Score=79.45 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=38.1
Q ss_pred EEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcch
Q psy5328 22 SVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGV 66 (76)
Q Consensus 22 SVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl 66 (76)
|||||+|||+...|.+++.|+.+++++. +|||+|||||+|+|.
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~--~eiiVvdd~s~D~t~ 43 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPN--FEVIVIDNNTKDEAL 43 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCC--cEEEEEeCCCCchhH
Confidence 7999999997558899999999987653 699999999999986
No 25
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.14 E-value=1.1e-10 Score=72.16 Aligned_cols=47 Identities=32% Similarity=0.331 Sum_probs=38.2
Q ss_pred EEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcc
Q psy5328 22 SVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 22 SVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
|||||+||++ ..|.+++.|+++|+.. .+|||+|||||+|++.+.+.+
T Consensus 1 Svvip~~n~~-~~l~~~l~sl~~q~~~--~~eiivvdd~s~d~~~~~~~~ 47 (169)
T PF00535_consen 1 SVVIPTYNEA-EYLERTLESLLKQTDP--DFEIIVVDDGSTDETEEILEE 47 (169)
T ss_dssp EEEEEESS-T-TTHHHHHHHHHHHSGC--EEEEEEEECS-SSSHHHHHHH
T ss_pred CEEEEeeCCH-HHHHHHHHHHhhccCC--CEEEEEecccccccccccccc
Confidence 8999999996 6999999999999543 579999999999998755443
No 26
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.13 E-value=1.2e-10 Score=84.68 Aligned_cols=49 Identities=27% Similarity=0.245 Sum_probs=43.2
Q ss_pred CCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHh
Q psy5328 17 DLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGA 68 (76)
Q Consensus 17 ~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~ 68 (76)
..|.+||+||+|||+ +.+.+++.|+++++++ .+||++|||||+|+|.+.
T Consensus 52 ~~p~vsViIp~yne~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~ 100 (420)
T PRK11204 52 EYPGVSILVPCYNEG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEI 100 (420)
T ss_pred CCCCEEEEEecCCCH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHH
Confidence 457899999999997 6899999999998876 369999999999998754
No 27
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.09 E-value=1.3e-10 Score=75.77 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=39.5
Q ss_pred EEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 23 VIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 23 VVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
||||+|||+ ..|.++|.++.++.++...+|||+|||||+|+|.+..
T Consensus 1 VvIp~~ne~-~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~ 46 (183)
T cd06438 1 ILIPAHNEE-AVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVA 46 (183)
T ss_pred CEEeccchH-HHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHH
Confidence 699999998 7999999999998764335799999999999997644
No 28
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.08 E-value=1.9e-10 Score=73.65 Aligned_cols=45 Identities=31% Similarity=0.261 Sum_probs=39.8
Q ss_pred EEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 22 SVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 22 SVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
|||||+||++ ..|.+++.|+++|+... +|||+|||||+|++.+.+
T Consensus 1 sivi~~~n~~-~~l~~~l~sl~~q~~~~--~evivvDd~s~d~~~~~~ 45 (202)
T cd06433 1 SIITPTYNQA-ETLEETIDSVLSQTYPN--IEYIVIDGGSTDGTVDII 45 (202)
T ss_pred CEEEeccchH-HHHHHHHHHHHhCCCCC--ceEEEEeCCCCccHHHHH
Confidence 7999999997 79999999999998764 699999999999987544
No 29
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.07 E-value=2.1e-10 Score=76.35 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=38.0
Q ss_pred EEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchH
Q psy5328 23 VIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVG 67 (76)
Q Consensus 23 VVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~ 67 (76)
||||+||++ ..|.++|.|+++|+.+. .+|||+|||||+|+|..
T Consensus 1 ViIp~yn~~-~~l~~~l~sl~~q~~~~-~~eiiVvDd~S~d~t~~ 43 (219)
T cd06913 1 IILPVHNGE-QWLDECLESVLQQDFEG-TLELSVFNDASTDKSAE 43 (219)
T ss_pred CEEeecCcH-HHHHHHHHHHHhCCCCC-CEEEEEEeCCCCccHHH
Confidence 699999997 79999999999998752 47999999999999864
No 30
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.07 E-value=3.8e-10 Score=75.03 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=40.6
Q ss_pred cEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 20 TVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 20 ~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
++|||||+|||+...|.++|.++.+|+ + +|||+|||||+|++...+
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~-~---~eiivvdd~s~d~~~~~l 46 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK-P---LEIIVVTDGDDEPYLSIL 46 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC-C---CEEEEEeCCCChHHHHHH
Confidence 489999999997579999999999987 2 499999999999987764
No 31
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.02 E-value=5.2e-10 Score=75.77 Aligned_cols=44 Identities=27% Similarity=0.358 Sum_probs=37.6
Q ss_pred cEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 20 TVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 20 ~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
++|||||+|||+ ..|.++|.|+..+. .|||+|||||+|+|.+..
T Consensus 1 ~isvii~~~Ne~-~~l~~~l~sl~~~~-----~eiivvD~gStD~t~~i~ 44 (229)
T cd02511 1 TLSVVIITKNEE-RNIERCLESVKWAV-----DEIIVVDSGSTDRTVEIA 44 (229)
T ss_pred CEEEEEEeCCcH-HHHHHHHHHHhccc-----CEEEEEeCCCCccHHHHH
Confidence 389999999997 68999999997653 299999999999997543
No 32
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.02 E-value=5.4e-10 Score=87.63 Aligned_cols=51 Identities=25% Similarity=0.232 Sum_probs=42.4
Q ss_pred CCCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcch
Q psy5328 16 EDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGV 66 (76)
Q Consensus 16 ~~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl 66 (76)
...|++||+||+|||+...+.+++.++++++++.-.+||+++||||+|+|.
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~ 178 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKR 178 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCcccc
Confidence 456899999999999854455789999998877445799999999999983
No 33
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.02 E-value=5.6e-10 Score=73.35 Aligned_cols=46 Identities=33% Similarity=0.281 Sum_probs=39.6
Q ss_pred EEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 23 VIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 23 VVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
||||+||++ ..|.++|.|+++|+.+...+|||+|||||+|+|.+.+
T Consensus 1 viip~~n~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~ 46 (229)
T cd04192 1 VVIAARNEA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQIL 46 (229)
T ss_pred CEEEecCcH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHH
Confidence 699999997 6899999999999876423799999999999997643
No 34
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.00 E-value=3.7e-10 Score=77.37 Aligned_cols=42 Identities=26% Similarity=0.091 Sum_probs=36.8
Q ss_pred EEEeeecCCchHHHHHHHHHHhhCCC--------CCceEEEEEeCCCCCc
Q psy5328 23 VIIIFTNEAWSPLIRTILTTLMRTPD--------KLLHEVLLIDDASDKY 64 (76)
Q Consensus 23 VVip~~NE~~~~L~~~l~svl~~~~~--------~~~~EiI~VDDgS~D~ 64 (76)
||||+|||+...|.++|.|+++|.++ ...+|||+|||||+|.
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d~ 50 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIKK 50 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCcccc
Confidence 69999999756899999999999987 3357999999999983
No 35
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.00 E-value=5.3e-10 Score=72.80 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=37.4
Q ss_pred EEEEeeecCCc-hHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 22 SVIIIFTNEAW-SPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 22 SVVip~~NE~~-~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
|||||+||++. ..|.++|.|+++|+.+. +|+|+|||||++++..++
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~--~eiiivdd~ss~d~t~~~ 47 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPP--DEVVLVKDGPVTQSLNEV 47 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCC--cEEEEEECCCCchhHHHH
Confidence 79999999973 58999999999998763 699999999955544443
No 36
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=98.99 E-value=5.8e-10 Score=73.61 Aligned_cols=44 Identities=36% Similarity=0.429 Sum_probs=38.2
Q ss_pred EEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhc
Q psy5328 23 VIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFR 70 (76)
Q Consensus 23 VVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~ 70 (76)
||||+|||+ ..|.++|.|+++++ + .+|||+|||||+|+|.+...
T Consensus 1 ViIp~~Ne~-~~l~~~l~sl~~~~-~--~~eIivvdd~S~D~t~~~~~ 44 (191)
T cd06436 1 VLVPCLNEE-AVIQRTLASLLRNK-P--NFLVLVIDDASDDDTAGIVR 44 (191)
T ss_pred CEEeccccH-HHHHHHHHHHHhCC-C--CeEEEEEECCCCcCHHHHHh
Confidence 699999998 79999999999987 3 36999999999999976543
No 37
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=98.98 E-value=1.4e-09 Score=72.26 Aligned_cols=49 Identities=24% Similarity=0.215 Sum_probs=41.2
Q ss_pred cEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 20 TVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 20 ~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
.+|||||+||++ ..|.+++.++.+++.+...+|||+|||||+|++.+.+
T Consensus 1 ~~sIiip~~n~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~ 49 (249)
T cd02525 1 FVSIIIPVRNEE-KYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIV 49 (249)
T ss_pred CEEEEEEcCCch-hhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHH
Confidence 389999999997 6899999999988764335799999999999886543
No 38
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.98 E-value=1.1e-09 Score=72.12 Aligned_cols=46 Identities=28% Similarity=0.267 Sum_probs=40.1
Q ss_pred EEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 21 VSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 21 vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
+|||||+||++ ..|.++|.|+++|+.. .+|||+|||||+|++....
T Consensus 1 vsvii~~~n~~-~~l~~~l~sl~~q~~~--~~evivvdd~s~d~~~~~~ 46 (221)
T cd02522 1 LSIIIPTLNEA-ENLPRLLASLRRLNPL--PLEIIVVDGGSTDGTVAIA 46 (221)
T ss_pred CEEEEEccCcH-HHHHHHHHHHHhccCC--CcEEEEEeCCCCccHHHHH
Confidence 69999999997 5899999999998863 4699999999999987654
No 39
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.97 E-value=5.4e-10 Score=73.95 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=37.2
Q ss_pred EEEeeecCCchHHHHHHHHHHhhCCC--CCceEEEEEeCCCCCcchHhh
Q psy5328 23 VIIIFTNEAWSPLIRTILTTLMRTPD--KLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 23 VVip~~NE~~~~L~~~l~svl~~~~~--~~~~EiI~VDDgS~D~tl~~~ 69 (76)
||||+|||+ ..|.+.+.++++++.. ...+|||+|||||+|+|....
T Consensus 1 iiip~yN~~-~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~ 48 (211)
T cd04188 1 VVIPAYNEE-KRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVA 48 (211)
T ss_pred CEEcccChH-HHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHH
Confidence 699999997 6899999999887531 124799999999999996543
No 40
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.96 E-value=1.1e-09 Score=79.15 Aligned_cols=52 Identities=33% Similarity=0.340 Sum_probs=46.2
Q ss_pred CCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcc
Q psy5328 18 LPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 18 ~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
+|.+||+||+|||+...+.+++.+++++.++. +|+++|||||+|++.+...+
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~~ 104 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILEE 104 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHHH
Confidence 58999999999998669999999999998874 69999999999999866544
No 41
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.95 E-value=1.1e-09 Score=72.16 Aligned_cols=44 Identities=20% Similarity=0.138 Sum_probs=37.5
Q ss_pred EEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHh
Q psy5328 23 VIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGA 68 (76)
Q Consensus 23 VVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~ 68 (76)
||||+||++ ..|.+++.++.+++.. ..+|||+|||||+|+|.+.
T Consensus 1 ViIp~yn~~-~~l~~~l~sl~~q~~~-~~~eiiiVDd~S~d~t~~~ 44 (224)
T cd06442 1 IIIPTYNER-ENIPELIERLDAALKG-IDYEIIVVDDNSPDGTAEI 44 (224)
T ss_pred CeEeccchh-hhHHHHHHHHHHhhcC-CCeEEEEEeCCCCCChHHH
Confidence 699999997 6899999999998752 2479999999999998653
No 42
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=98.94 E-value=1.6e-09 Score=86.93 Aligned_cols=51 Identities=22% Similarity=0.137 Sum_probs=43.3
Q ss_pred CCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchH
Q psy5328 17 DLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVG 67 (76)
Q Consensus 17 ~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~ 67 (76)
..|++||+||+|||+...+.+++.++++++++...+||+++||||+|++.+
T Consensus 258 ~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~ 308 (852)
T PRK11498 258 LWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQ 308 (852)
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHH
Confidence 458999999999998556678999999988875467999999999999853
No 43
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.90 E-value=1.8e-09 Score=66.40 Aligned_cols=46 Identities=26% Similarity=0.290 Sum_probs=39.8
Q ss_pred EEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcc
Q psy5328 23 VIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 23 VVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
||||+||++ ..|.++|.|+++|+.. .+|+++|||||+|+|.....+
T Consensus 1 Viip~~n~~-~~l~~~l~sl~~q~~~--~~~iivvdd~s~d~t~~~~~~ 46 (180)
T cd06423 1 IIVPAYNEE-AVIERTIESLLALDYP--KLEVIVVDDGSTDDTLEILEE 46 (180)
T ss_pred CeecccChH-HHHHHHHHHHHhCCCC--ceEEEEEeCCCccchHHHHHH
Confidence 689999998 7999999999998864 479999999999999765544
No 44
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.89 E-value=3.1e-09 Score=69.50 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=38.3
Q ss_pred EEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 23 VIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 23 VVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
||||.||++ ..|.++|.|+++|+.+ .+|||+|||||+|+|.+..
T Consensus 1 viI~~~n~~-~~l~~~l~sl~~q~~~--~~eiiivD~~s~d~t~~~~ 44 (202)
T cd04185 1 AVVVTYNRL-DLLKECLDALLAQTRP--PDHIIVIDNASTDGTAEWL 44 (202)
T ss_pred CEEEeeCCH-HHHHHHHHHHHhccCC--CceEEEEECCCCcchHHHH
Confidence 699999997 7999999999999865 3599999999999987554
No 45
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=98.88 E-value=3.4e-09 Score=67.85 Aligned_cols=42 Identities=24% Similarity=0.208 Sum_probs=36.9
Q ss_pred EEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchH
Q psy5328 23 VIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVG 67 (76)
Q Consensus 23 VVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~ 67 (76)
||||+||+. ..|.++|.|+.+|+.. .+|||+|||||+|+|..
T Consensus 1 ivip~~n~~-~~l~~~l~sl~~q~~~--~~eiivvdd~s~d~t~~ 42 (182)
T cd06420 1 LIITTYNRP-EALELVLKSVLNQSIL--PFEVIIADDGSTEETKE 42 (182)
T ss_pred CEEeecCCh-HHHHHHHHHHHhccCC--CCEEEEEeCCCchhHHH
Confidence 699999997 6899999999998854 36999999999999854
No 46
>KOG2978|consensus
Probab=98.74 E-value=1.5e-08 Score=70.36 Aligned_cols=49 Identities=24% Similarity=0.174 Sum_probs=39.1
Q ss_pred CCcEEEEEeeecCCc--hHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHh
Q psy5328 18 LPTVSVIIIFTNEAW--SPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGA 68 (76)
Q Consensus 18 ~p~vSVVip~~NE~~--~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~ 68 (76)
++.-||++|.|||.. ..+.+.+...+.+... .+|||+|||+|.|+|.+.
T Consensus 2 ~~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~--~~eiIivDD~SpDGt~~~ 52 (238)
T KOG2978|consen 2 SIKYSVILPTYNEKENLPIITRLIAKYMSEEGK--KYEIIIVDDASPDGTQEV 52 (238)
T ss_pred CcceeEEeccccCCCCCeeeHHHHHhhhhhhcC--ceEEEEEeCCCCCccHHH
Confidence 356899999999984 4667777777776543 579999999999999754
No 47
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.73 E-value=1.6e-08 Score=64.73 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=38.1
Q ss_pred EEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 23 VIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 23 VVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
||||+||++ ..|.+++.|+.++......+|||+|||||+|++...+
T Consensus 1 iii~~~n~~-~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~ 46 (185)
T cd04179 1 VVIPAYNEE-ENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIA 46 (185)
T ss_pred CeecccChH-hhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHH
Confidence 689999997 6899999999998752224799999999999986544
No 48
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.73 E-value=1.5e-08 Score=65.29 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=31.2
Q ss_pred EEEeeecCCchHHHHHHHHH---HhhCCCCCceEEEEEeCCCCCcchHh
Q psy5328 23 VIIIFTNEAWSPLIRTILTT---LMRTPDKLLHEVLLIDDASDKYGVGA 68 (76)
Q Consensus 23 VVip~~NE~~~~L~~~l~sv---l~~~~~~~~~EiI~VDDgS~D~tl~~ 68 (76)
||||+||++ ..|.+.+.++ +.++.. .+|||+|||||+|+|...
T Consensus 1 viIp~~n~~-~~l~~~l~sl~~~~~~~~~--~~eiivvdd~s~d~t~~~ 46 (181)
T cd04187 1 IVVPVYNEE-ENLPELYERLKAVLESLGY--DYEIIFVDDGSTDRTLEI 46 (181)
T ss_pred CEEeecCch-hhHHHHHHHHHHHHHhcCC--CeEEEEEeCCCCccHHHH
Confidence 699999998 4555555544 444332 479999999999998644
No 49
>KOG2977|consensus
Probab=98.66 E-value=3.5e-08 Score=71.63 Aligned_cols=52 Identities=23% Similarity=0.156 Sum_probs=38.3
Q ss_pred cEEEEEeeecCCc---hHHHHHHHHHHhhCC--CCCceEEEEEeCCCCCcchHhhcc
Q psy5328 20 TVSVIIIFTNEAW---SPLIRTILTTLMRTP--DKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 20 ~vSVVip~~NE~~---~~L~~~l~svl~~~~--~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
.+|||||.|||.. ..|-+++...-++.. +.+.||+++|||||+|+|.+.-++
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k 124 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALK 124 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHH
Confidence 6999999999983 345555555544321 236799999999999999876554
No 50
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=98.65 E-value=8.8e-09 Score=68.32 Aligned_cols=46 Identities=35% Similarity=0.377 Sum_probs=34.1
Q ss_pred CcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchH
Q psy5328 19 PTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVG 67 (76)
Q Consensus 19 p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~ 67 (76)
|.+|||||+|||. ..|.++|.|++++.+. .+||++|||+|++++.+
T Consensus 1 P~v~Vvip~~~~~-~~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~ 46 (228)
T PF13641_consen 1 PRVSVVIPAYNED-DVLRRCLESLLAQDYP--RLEVVVVDDGSDDETAE 46 (228)
T ss_dssp --EEEE--BSS-H-HHHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCT
T ss_pred CEEEEEEEecCCH-HHHHHHHHHHHcCCCC--CeEEEEEECCCChHHHH
Confidence 6799999999997 6999999999988664 47999999999998754
No 51
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.62 E-value=6.6e-08 Score=60.22 Aligned_cols=45 Identities=29% Similarity=0.294 Sum_probs=38.5
Q ss_pred EEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhc
Q psy5328 23 VIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFR 70 (76)
Q Consensus 23 VVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~ 70 (76)
||||+||+. ..|.+++.|+.+++.. .+||++|||||+|++.+.+.
T Consensus 1 vii~~~~~~-~~l~~~l~sl~~~~~~--~~~iiivdd~s~~~~~~~~~ 45 (166)
T cd04186 1 IIIVNYNSL-EYLKACLDSLLAQTYP--DFEVIVVDNASTDGSVELLR 45 (166)
T ss_pred CEEEecCCH-HHHHHHHHHHHhccCC--CeEEEEEECCCCchHHHHHH
Confidence 689999996 7999999999998763 47999999999999876543
No 52
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=98.58 E-value=1.5e-07 Score=72.05 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=42.1
Q ss_pred CCCCcEEEEEeeecCCchHHHHHHHHHHhhC-CCCCceEEEEEeCCCCCcchHhh
Q psy5328 16 EDLPTVSVIIIFTNEAWSPLIRTILTTLMRT-PDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 16 ~~~p~vSVVip~~NE~~~~L~~~l~svl~~~-~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
...|.+||+||+|||+ ..+.++|.+.+.+. ++ .+||+++||+|+|+|.+..
T Consensus 63 ~~~p~vaIlIPA~NE~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v 114 (504)
T PRK14716 63 VPEKRIAIFVPAWREA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREV 114 (504)
T ss_pred CCCCceEEEEeccCch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHH
Confidence 3467899999999998 68999999987653 54 4699999999999986554
No 53
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.49 E-value=2.3e-07 Score=61.70 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=34.6
Q ss_pred EEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHh
Q psy5328 23 VIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGA 68 (76)
Q Consensus 23 VVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~ 68 (76)
+|||.||++...|.++|.|+++| .+|||+|||||+|.+...
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q-----~~~iivvDn~s~~~~~~~ 41 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ-----VDKVVVVDNSSGNDIELR 41 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc-----CCEEEEEeCCCCccHHHH
Confidence 58999999757999999999987 249999999999876543
No 54
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=98.20 E-value=2.5e-06 Score=59.79 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=34.5
Q ss_pred EEEEEeeecCCchHHHHHHHHHHh----hCCCCCceEEEEEeCCCCCcc
Q psy5328 21 VSVIIIFTNEAWSPLIRTILTTLM----RTPDKLLHEVLLIDDASDKYG 65 (76)
Q Consensus 21 vSVVip~~NE~~~~L~~~l~svl~----~~~~~~~~EiI~VDDgS~D~t 65 (76)
+||+||+|||....|..+|.+.++ +.+.. .+||+++||++++..
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~-~~eI~vldD~~d~~~ 48 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLAD-HFDFFILSDTRDPDI 48 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcC-ceEEEEECCCCChHH
Confidence 699999999986668899988875 33311 479999999987654
No 55
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=98.10 E-value=7.4e-06 Score=65.16 Aligned_cols=50 Identities=8% Similarity=-0.002 Sum_probs=40.0
Q ss_pred CCCCcEEEEEeeecCCchHHHHHHHHHH-hhCCCCCceEEEEEeCCCCCcchHh
Q psy5328 16 EDLPTVSVIIIFTNEAWSPLIRTILTTL-MRTPDKLLHEVLLIDDASDKYGVGA 68 (76)
Q Consensus 16 ~~~p~vSVVip~~NE~~~~L~~~l~svl-~~~~~~~~~EiI~VDDgS~D~tl~~ 68 (76)
...|.+||+||+|||+ ..+.+++.+++ .+.++. +||++++|++++.|...
T Consensus 60 ~~~~~vsIlVPa~nE~-~vi~~~i~~ll~~ldYP~--~eI~vi~~~nD~~T~~~ 110 (727)
T PRK11234 60 PDEKPLAIMVPAWNET-GVIGNMAELAATTLDYEN--YHIFVGTYPNDPATQAD 110 (727)
T ss_pred CCCCCEEEEEecCcch-hhHHHHHHHHHHhCCCCC--eEEEEEecCCChhHHHH
Confidence 3457899999999998 58889999887 456664 69999988887777544
No 56
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=98.09 E-value=8.8e-06 Score=64.43 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=38.5
Q ss_pred CCCcEEEEEeeecCCch----HHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchH
Q psy5328 17 DLPTVSVIIIFTNEAWS----PLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVG 67 (76)
Q Consensus 17 ~~p~vSVVip~~NE~~~----~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~ 67 (76)
..|.++|+||+|||+.. .+..++.|+..+.+.. .+|++++||+++|++..
T Consensus 122 ~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~-~~e~~vLdD~~d~~~~~ 175 (691)
T PRK05454 122 PEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGA-HFDFFILSDTRDPDIAA 175 (691)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCC-CEEEEEEECCCChhHHH
Confidence 35689999999999853 5666667777665542 47999999999998753
No 57
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.08 E-value=1e-05 Score=57.26 Aligned_cols=49 Identities=20% Similarity=0.395 Sum_probs=42.3
Q ss_pred CCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 18 LPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 18 ~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
+|.+|+||+.||.. ..+.+++.++.++++.. .++++||+||+|++....
T Consensus 2 ~~~i~~iiv~yn~~-~~l~~~l~~l~~~~~~~--~~iv~vDn~s~d~~~~~~ 50 (305)
T COG1216 2 MPKISIIIVTYNRG-EDLVECLASLAAQTYPD--DVIVVVDNGSTDGSLEAL 50 (305)
T ss_pred CcceEEEEEecCCH-HHHHHHHHHHhcCCCCC--cEEEEccCCCCCCCHHHH
Confidence 67899999999997 69999999999998764 466689999999998544
No 58
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=97.94 E-value=1.2e-05 Score=56.53 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=29.4
Q ss_pred EEEEeeecCCc-hHHHHHH----HHHHhhCCCCCceEEEEEeCCCCCcc
Q psy5328 22 SVIIIFTNEAW-SPLIRTI----LTTLMRTPDKLLHEVLLIDDASDKYG 65 (76)
Q Consensus 22 SVVip~~NE~~-~~L~~~l----~svl~~~~~~~~~EiI~VDDgS~D~t 65 (76)
|||||++|... ..+.+++ .++.+.... ...|||+|||||.+.+
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~-~~~eiIvvd~~s~~~~ 48 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSD-PDFEIIVVDDGSSDEF 48 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCchhH
Confidence 79999999973 2344444 444432222 3579999999999875
No 59
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=97.94 E-value=2e-05 Score=47.16 Aligned_cols=46 Identities=30% Similarity=0.305 Sum_probs=38.2
Q ss_pred EEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcc
Q psy5328 23 VIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 23 VVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
|+||++|+. ..+..++.+++++... .+|++++||+|++.+.....+
T Consensus 1 iii~~~~~~-~~l~~~l~s~~~~~~~--~~~i~i~~~~~~~~~~~~~~~ 46 (156)
T cd00761 1 VIIPAYNEE-PYLERCLESLLAQTYP--NFEVIVVDDGSTDGTLEILEE 46 (156)
T ss_pred CEEeecCcH-HHHHHHHHHHHhCCcc--ceEEEEEeCCCCccHHHHHHH
Confidence 689999996 7999999999998753 469999999999988765443
No 60
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=97.79 E-value=3.1e-05 Score=61.58 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=40.5
Q ss_pred CCCcEEEEEeeecCCchHHHHHHHHHHhh-CCCCCceEEEE---EeCCCCCcchHhhc
Q psy5328 17 DLPTVSVIIIFTNEAWSPLIRTILTTLMR-TPDKLLHEVLL---IDDASDKYGVGAFR 70 (76)
Q Consensus 17 ~~p~vSVVip~~NE~~~~L~~~l~svl~~-~~~~~~~EiI~---VDDgS~D~tl~~~~ 70 (76)
..|.+||+||+|||+ ..+.++|.+++++ .++. +||++ +|||+|...++..-
T Consensus 69 ~~~~vsIlVPa~nE~-~VI~~~v~~ll~~ldYp~--~~I~v~~~~nD~~T~~~~~~~~ 123 (703)
T PRK15489 69 DEQPLAIMVPAWKEY-DVIAKMIENMLATLDYRR--YVIFVGTYPNDAETITEVERMR 123 (703)
T ss_pred CCCceEEEEeCCCcH-HHHHHHHHHHHhcCCCCC--eEEEEEecCCCccHHHHHHHHh
Confidence 456899999999998 6999999998844 6664 58888 69998877766554
No 61
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=97.53 E-value=0.00015 Score=50.06 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=31.2
Q ss_pred eecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCc-chHhhcc
Q psy5328 27 FTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKY-GVGAFRQ 71 (76)
Q Consensus 27 ~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~-tl~~~~~ 71 (76)
.||.....|.++|.|+++|. .|||+|||||+|+ +++.+++
T Consensus 2 tyn~~~~~l~~~l~sl~~q~-----~~iiVVDN~S~~~~~~~~~~~ 42 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPKQV-----DRIIAVDNSPHSDQPLKNARL 42 (281)
T ss_pred ccCccHHHHHHHHHHHHhcC-----CEEEEEECcCCCcHhHHHHhc
Confidence 58875578899999999874 3999999999865 6655443
No 62
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=97.31 E-value=0.00042 Score=50.97 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=38.7
Q ss_pred EEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 21 VSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 21 vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
+.|+|.+||.. ..|.++|.|++++.|....++|++.+|||.+++.+..
T Consensus 2 ~PVlv~ayNRp-~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v 49 (334)
T cd02514 2 IPVLVIACNRP-DYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVA 49 (334)
T ss_pred cCEEEEecCCH-HHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHH
Confidence 57999999996 6999999999998533335799999999988765444
No 63
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=96.79 E-value=0.0027 Score=37.60 Aligned_cols=38 Identities=24% Similarity=0.187 Sum_probs=28.9
Q ss_pred ecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhc
Q psy5328 28 TNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFR 70 (76)
Q Consensus 28 ~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~ 70 (76)
+||+ ..|.+.|...++... -.++++||||+|+|...+.
T Consensus 1 rne~-~~L~~wl~~~~~lG~----d~i~i~d~~s~D~t~~~l~ 38 (97)
T PF13704_consen 1 RNEA-DYLPEWLAHHLALGV----DHIYIYDDGSTDGTREILR 38 (97)
T ss_pred CChH-HHHHHHHHHHHHcCC----CEEEEEECCCCccHHHHHH
Confidence 4786 588888888865422 3799999999999976553
No 64
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=95.22 E-value=0.047 Score=35.85 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=32.7
Q ss_pred cCcccccccccCCCCCcEEEEEeeecCCc--hHHHHHHHHHHhhCCCCCceEEEEEeCCC
Q psy5328 4 HSLLRCHELKYDEDLPTVSVIIIFTNEAW--SPLIRTILTTLMRTPDKLLHEVLLIDDAS 61 (76)
Q Consensus 4 ~R~~~c~~~~y~~~~p~vSVVip~~NE~~--~~L~~~l~svl~~~~~~~~~EiI~VDDgS 61 (76)
+++.+|... -++.||||+.|.+. ..++..++..|++.. ..+.|++|+=..
T Consensus 38 ~~p~~C~~~------~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~--~~y~I~vieQ~~ 89 (136)
T PF13733_consen 38 WKPPDCKPR------HKVAIIIPYRDREEHLRIFLPHLHPFLQRQQ--LDYRIFVIEQVD 89 (136)
T ss_dssp E--SSSB-S-------EEEEEEEESS-HHHHHHHHHHHHHHHHHTT---EEEEEEEEE-S
T ss_pred ecCCccccc------cceEEEEEeCCHHHHHHHHHHHHHHHHhhCc--ceEEEEEEeecc
Confidence 455556532 27999999999863 577778888898754 467999987553
No 65
>KOG3916|consensus
Probab=94.97 E-value=0.05 Score=40.76 Aligned_cols=54 Identities=24% Similarity=0.283 Sum_probs=41.5
Q ss_pred CcCcccccccccCCCCCcEEEEEeeecCCc--hHHHHHHHHHHhhCCCCCceEEEEEeCCCCCc
Q psy5328 3 GHSLLRCHELKYDEDLPTVSVIIIFTNEAW--SPLIRTILTTLMRTPDKLLHEVLLIDDASDKY 64 (76)
Q Consensus 3 d~R~~~c~~~~y~~~~p~vSVVip~~NE~~--~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~ 64 (76)
.+|+++|.. .-++.||||+.|.+. ..++..++.+|++.- +.|-|.+|+-..++.
T Consensus 141 ~~~P~dC~a------r~kvAIIIPfR~Re~HL~~~l~~LhP~LqrQr--L~y~iyVieQ~g~~~ 196 (372)
T KOG3916|consen 141 RYRPEDCQA------RHKVAIIIPFRNREEHLRYLLHHLHPFLQRQR--LDYRIYVIEQAGNKP 196 (372)
T ss_pred CcCCCCCCc------cceeEEEeecccHHHHHHHHHHHhhHHHHhhh--hceeEEEEEecCCCc
Confidence 578888872 236999999999873 577888999998754 467999998766654
No 66
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=93.39 E-value=0.28 Score=38.37 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=33.6
Q ss_pred EEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCC
Q psy5328 21 VSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDA 60 (76)
Q Consensus 21 vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDg 60 (76)
+=..||+|||..+.|.++|.|+..+.+++..+=|++|=||
T Consensus 27 ~i~~v~cy~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG 66 (527)
T PF03142_consen 27 VICLVPCYSEGEEELRTTLDSLATTDYDDSRKLIFVICDG 66 (527)
T ss_pred EEEEEccccCChHHHHHHHHHHHhcCCCCcccEEEEEcCc
Confidence 4457999999988999999999988877656678888888
No 67
>PF01793 Glyco_transf_15: Glycolipid 2-alpha-mannosyltransferase; InterPro: IPR002685 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This entry represents a family of fungi mannosyl-transferases involved in N-linked and O-linked glycosylation of proteins. They belong to the glycosyltransferase family 15 (GT15 from CAZY). Some of the enzymes in this family have been shown to be involved in O- and N-linked glycan modifications in the Golgi [].; GO: 0000030 mannosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 1S4P_A 1S4O_A 1S4N_A.
Probab=85.14 E-value=2.1 Score=31.74 Aligned_cols=53 Identities=11% Similarity=0.081 Sum_probs=35.8
Q ss_pred CCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhc
Q psy5328 18 LPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFR 70 (76)
Q Consensus 18 ~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~ 70 (76)
.+.+++|+-+.|+....++++|+++-.+-...+.+-+|+++|+.-++..+..+
T Consensus 54 r~~Aafv~LvrN~dL~~~l~SI~~lE~rFN~kf~YpwvFlnd~pFteeFk~~i 106 (328)
T PF01793_consen 54 RENAAFVMLVRNSDLEGLLSSIRSLEDRFNKKFNYPWVFLNDEPFTEEFKEAI 106 (328)
T ss_dssp ---EEEEEE--GGGHHHHHHHHHHHHHHTTTTS---EEEEESS---HHHHHHH
T ss_pred CCceEEEEEEEchhHHHHHHHHHHHHHHccCCCCCCEEEEeCCCCCHHHHHHH
Confidence 45799999999998889999999999887777788999999998776665544
No 68
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=83.67 E-value=2.2 Score=32.83 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=30.4
Q ss_pred CCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHh
Q psy5328 18 LPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGA 68 (76)
Q Consensus 18 ~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~ 68 (76)
.+.+-|+|-++|.. ..+.|+|.++++..+..-.+-|++=.||+...+.+.
T Consensus 92 ~~~~pVlV~AcNRp-~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~v 141 (434)
T PF03071_consen 92 EPVIPVLVFACNRP-DYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEV 141 (434)
T ss_dssp -----EEEEESS-T-T-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHH
T ss_pred CCcceEEEEecCCc-HHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHH
Confidence 45688888889996 579999999998655433568999999998776543
No 69
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=83.27 E-value=2.5 Score=29.60 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=28.7
Q ss_pred cEEEEEeeecCCc--hHHHHHHHHHHhhCCCCCceEEEEEe
Q psy5328 20 TVSVIIIFTNEAW--SPLIRTILTTLMRTPDKLLHEVLLID 58 (76)
Q Consensus 20 ~vSVVip~~NE~~--~~L~~~l~svl~~~~~~~~~EiI~VD 58 (76)
.++||||+.|... ..++..++..|++.. ..+.|.+|+
T Consensus 3 ~~aiivpyr~R~~~l~~~l~~~~~~L~rq~--~~~~i~vi~ 41 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQQ--LDYRIFVIE 41 (219)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHhcC--CcEEEEEEE
Confidence 5899999998863 466777888888764 456888887
No 70
>KOG2547|consensus
Probab=82.63 E-value=5 Score=30.79 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=42.0
Q ss_pred CCCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHh
Q psy5328 16 EDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGA 68 (76)
Q Consensus 16 ~~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~ 68 (76)
+.+|.+|||-|..--. ++++..+.+.+...++ .+|++++-+-+.|...+.
T Consensus 82 ~~LPgVSiikPl~G~d-~nl~~Nlesffts~Y~--~~ElLfcv~s~eDpAi~v 131 (431)
T KOG2547|consen 82 PKLPGVSIIKPLKGVD-PNLYHNLESFFTSQYH--KYELLFCVESSEDPAIEV 131 (431)
T ss_pred CCCCCceEEeecccCC-chhHHhHHHHHhhccC--ceEEEEEEccCCCcHHHH
Confidence 4789999999998665 6899999999887776 479999999999987644
No 71
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=80.17 E-value=4 Score=30.61 Aligned_cols=46 Identities=17% Similarity=0.044 Sum_probs=36.2
Q ss_pred cEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcc
Q psy5328 20 TVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 20 ~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
..|-.+-+.||+ .+|.+.|.|.|...- |.|+.=+-|+|+|.+.+++
T Consensus 88 ~~~~~iRvKnE~-~tl~~si~S~Lpai~-----~gVI~yNdc~D~t~Eiil~ 133 (347)
T PF06306_consen 88 NPWAFIRVKNEA-MTLAESIESILPAID-----EGVIGYNDCTDGTEEIILE 133 (347)
T ss_pred CcceEEEEcchh-hhHHHHHHHHHHHHh-----ccEEEeecCCCCHHHHHHH
Confidence 477788999998 699999999997532 6777777778999766554
No 72
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=76.82 E-value=5.6 Score=27.29 Aligned_cols=57 Identities=9% Similarity=0.044 Sum_probs=38.7
Q ss_pred cccccccCCCCCcEEEEEeeecCC-chHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHh
Q psy5328 8 RCHELKYDEDLPTVSVIIIFTNEA-WSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGA 68 (76)
Q Consensus 8 ~c~~~~y~~~~p~vSVVip~~NE~-~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~ 68 (76)
.|..+.|.++...+.+++|..... +..+...+...+++.. +.+++.+.+++......
T Consensus 16 ~~~~~~~~~~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G----~~~~~~~~~~d~~~~~~ 73 (295)
T PRK10653 16 SATVSANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLG----YNLVVLDSQNNPAKELA 73 (295)
T ss_pred HHhcCCccccCCeEEEEecCCCChHHHHHHHHHHHHHHHcC----CeEEEecCCCCHHHHHH
Confidence 477778887667899999865433 4678888888877642 47888777654433333
No 73
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=75.48 E-value=9.2 Score=29.06 Aligned_cols=37 Identities=14% Similarity=0.337 Sum_probs=23.2
Q ss_pred cEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCC
Q psy5328 20 TVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASD 62 (76)
Q Consensus 20 ~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~ 62 (76)
..+||||+.||.. ..+.-||..-|.. +=||+|-+-+.
T Consensus 51 ~maIVVP~KnE~l----~lleGVL~gIPh~--C~IIvVSNS~r 87 (381)
T PF09488_consen 51 KMAIVVPCKNEKL----KLLEGVLSGIPHD--CLIIVVSNSSR 87 (381)
T ss_dssp TEEEEEEESS--H----HHHHHHHHCS-TT--SEEEEEE---C
T ss_pred CcEEEEECCCCch----hhhhhhhhcCCCC--CeEEEEECCCC
Confidence 5899999999984 4455667666653 57888888777
No 74
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=72.73 E-value=4.5 Score=30.18 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcch
Q psy5328 33 SPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGV 66 (76)
Q Consensus 33 ~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl 66 (76)
..+.+.+..++++..+. .+++|=||..|+..
T Consensus 84 ~~I~~qld~vl~~~~~~---~~i~VsDGaeDE~v 114 (344)
T PF04123_consen 84 RKIAEQLDEVLSKFDPD---SAIVVSDGAEDERV 114 (344)
T ss_pred HHHHHHHHHHHHhCCCC---EEEEEecChhhhhh
Confidence 68999999999998765 89999999999975
No 75
>COG5020 KTR1 Mannosyltransferase [Carbohydrate transport and metabolism]
Probab=67.82 E-value=10 Score=28.99 Aligned_cols=51 Identities=8% Similarity=0.093 Sum_probs=43.3
Q ss_pred CcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 19 PTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 19 p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
+..++|+-+.|.+...++++|.|+-.+....+.+-.++.||.--++..++.
T Consensus 81 ~natfv~L~RN~dL~~vl~Si~svE~rFNk~f~YpwvFLNdepFteeFk~~ 131 (399)
T COG5020 81 ENATFVMLARNSDLEDVLSSIRSVEDRFNKNFHYPWVFLNDEPFTEEFKEA 131 (399)
T ss_pred cccEEEEEEechhHHHHHHHHHHHHHHhhccCCCCeEEecCchhHHHHHHH
Confidence 468999999999988999999999988777777899999999877666543
No 76
>KOG4472|consensus
Probab=67.82 E-value=10 Score=28.99 Aligned_cols=51 Identities=8% Similarity=0.093 Sum_probs=43.3
Q ss_pred CcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 19 PTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 19 p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
+..++|+-+.|.+...++++|.|+-.+....+.+-.++.||.--++..++.
T Consensus 81 ~natfv~L~RN~dL~~vl~Si~svE~rFNk~f~YpwvFLNdepFteeFk~~ 131 (399)
T KOG4472|consen 81 ENATFVMLARNSDLEDVLSSIRSVEDRFNKNFHYPWVFLNDEPFTEEFKEA 131 (399)
T ss_pred cccEEEEEEechhHHHHHHHHHHHHHHhhccCCCCeEEecCchhHHHHHHH
Confidence 468999999999988999999999988777777899999999877666543
No 77
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=67.59 E-value=17 Score=25.90 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=35.2
Q ss_pred cEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhccc
Q psy5328 20 TVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQP 72 (76)
Q Consensus 20 ~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~~ 72 (76)
.++||....|= ...+..+|.|++..... ...+-+++|+.+.+..+.+.+.
T Consensus 2 ~~~iv~~~~~y-~~~~~~~i~Sil~n~~~--~~~fhii~d~~s~~~~~~l~~~ 51 (280)
T cd06431 2 HVAIVCAGYNA-SRDVVTLVKSVLFYRRN--PLHFHLITDEIARRILATLFQT 51 (280)
T ss_pred EEEEEEccCCc-HHHHHHHHHHHHHcCCC--CEEEEEEECCcCHHHHHHHHHh
Confidence 47778877443 36888899999986532 3588889898877766665443
No 78
>PLN02190 cellulose synthase-like protein
Probab=65.06 E-value=15 Score=30.24 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=44.4
Q ss_pred CCCcEEEEEeeec---CCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcc
Q psy5328 17 DLPTVSVIIIFTN---EAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 17 ~~p~vSVVip~~N---E~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
.+|.+-|.|+.+| |..-....++-|+++-.++.-..-+-+-|||.+.-|+..+.+
T Consensus 91 ~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~E 148 (756)
T PLN02190 91 DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKE 148 (756)
T ss_pred cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHH
Confidence 4789999999999 654577889999999887765556789999998888766554
No 79
>KOG1111|consensus
Probab=64.88 E-value=11 Score=28.94 Aligned_cols=43 Identities=12% Similarity=0.254 Sum_probs=35.8
Q ss_pred eecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhccc
Q psy5328 27 FTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQP 72 (76)
Q Consensus 27 ~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~~ 72 (76)
+||.+..-|.+.|.+++++.+. ..++++-||..-.-+++.++.
T Consensus 205 vyrKGiDll~~iIp~vc~~~p~---vrfii~GDGPk~i~lee~lEk 247 (426)
T KOG1111|consen 205 VYRKGIDLLLEIIPSVCDKHPE---VRFIIIGDGPKRIDLEEMLEK 247 (426)
T ss_pred eeccchHHHHHHHHHHHhcCCC---eeEEEecCCcccchHHHHHHH
Confidence 5899877899999999998775 499999999987777776653
No 80
>PF02598 Methyltrn_RNA_3: Putative RNA methyltransferase; InterPro: IPR003750 This entry describes proteins of unknown function.; PDB: 1K3R_B.
Probab=64.36 E-value=2.9 Score=30.31 Aligned_cols=40 Identities=25% Similarity=0.191 Sum_probs=17.1
Q ss_pred cEEEEEee--e-cCCchHHHHHHHHHHhhCCCC-CceEEEEEeC
Q psy5328 20 TVSVIIIF--T-NEAWSPLIRTILTTLMRTPDK-LLHEVLLIDD 59 (76)
Q Consensus 20 ~vSVVip~--~-NE~~~~L~~~l~svl~~~~~~-~~~EiI~VDD 59 (76)
++||.||- . |+.-..+.-.+...+++.... ..-|||+-||
T Consensus 1 tvSIaIP~Sil~n~~s~e~~T~~~gqIARaaaiF~VdEIvVydd 44 (291)
T PF02598_consen 1 TVSIAIPGSILSNAQSLELKTYKAGQIARAAAIFRVDEIVVYDD 44 (291)
T ss_dssp -EEEEEETTTTTT---HHHHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred CEEEEechHHhccCCCHHHHHHHHHHHHHHHHeecCcEEEEEcc
Confidence 47888885 3 443212222222333332111 1349999999
No 81
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=61.06 E-value=22 Score=27.08 Aligned_cols=37 Identities=11% Similarity=0.329 Sum_probs=26.7
Q ss_pred cEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCC
Q psy5328 20 TVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASD 62 (76)
Q Consensus 20 ~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~ 62 (76)
...||||+.||.. ..|.-||..-|.. +=||+|-+-+.
T Consensus 51 ~maIVVP~KdE~l----~lleGVL~gIPh~--c~iIvVSNS~r 87 (381)
T TIGR02460 51 KTAIVVPVKNEKL----HLLEGVLSGIPHE--CPIIIVSNSKR 87 (381)
T ss_pred CcEEEEEcCCCch----hHHhhHhhcCCCC--CeEEEEeCCCC
Confidence 5899999999984 4555666666653 56777777665
No 82
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=58.59 E-value=25 Score=26.83 Aligned_cols=37 Identities=11% Similarity=0.349 Sum_probs=26.3
Q ss_pred cEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCC
Q psy5328 20 TVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASD 62 (76)
Q Consensus 20 ~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~ 62 (76)
...||||+.||.. ..|.-||..-|.. +=||+|-+-+.
T Consensus 52 ~mAIVVP~KdE~l----~lleGVL~gIPh~--c~iIvVSNS~r 88 (393)
T PRK14503 52 RMAIVVPVKNERL----KLLEGVLKGIPHE--CPIIVVSNSKR 88 (393)
T ss_pred CcEEEEEcCCCch----hHHhhHhhcCCCC--CeEEEEeCCCC
Confidence 5899999999984 4555667666653 46777766655
No 83
>PF15224 SCRG1: Scrapie-responsive protein 1
Probab=57.52 E-value=7.8 Score=22.88 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=10.3
Q ss_pred CcEEEEEeeecC
Q psy5328 19 PTVSVIIIFTNE 30 (76)
Q Consensus 19 p~vSVVip~~NE 30 (76)
|++|.|||+-|+
T Consensus 67 PkiSFVIPCN~~ 78 (78)
T PF15224_consen 67 PKISFVIPCNNH 78 (78)
T ss_pred CceeEEEeCCCC
Confidence 789999998764
No 84
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=56.19 E-value=24 Score=22.71 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=27.4
Q ss_pred EEEEEeeecCC-chHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcch
Q psy5328 21 VSVIIIFTNEA-WSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGV 66 (76)
Q Consensus 21 vSVVip~~NE~-~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl 66 (76)
+.++.|..+.. +..+.+.+...+++. .+++++.+++++.++.
T Consensus 2 ig~v~~~~~~~~~~~~~~g~~~~~~~~----g~~l~~~~~~~~~~~~ 44 (264)
T cd01537 2 IGVLVPDLDNPFFAQVLKGIEEAAKAA----GYQVLLANSQNDAEKQ 44 (264)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHc----CCeEEEEeCCCCHHHH
Confidence 56677765343 367777788777763 2588888887754433
No 85
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=54.21 E-value=29 Score=25.10 Aligned_cols=53 Identities=17% Similarity=0.055 Sum_probs=38.1
Q ss_pred CCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCC--CcchHhhc
Q psy5328 17 DLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASD--KYGVGAFR 70 (76)
Q Consensus 17 ~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~--D~tl~~~~ 70 (76)
..++|=|+.|+.|-+ +.+-+....+.+.++++....+-|+-.-|+ |.+++.+-
T Consensus 23 ~~e~VLILtplrna~-~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~ 77 (269)
T PF03452_consen 23 NKESVLILTPLRNAA-SFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILE 77 (269)
T ss_pred cCCeEEEEEecCCch-HHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHH
Confidence 346799999999976 677777778888788766677755555555 67755544
No 86
>KOG1476|consensus
Probab=53.66 E-value=37 Score=25.44 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=32.7
Q ss_pred CCcEEEEEeeecCCc-hHHHHHHHHHHhhCCCCCceEEEEEeCCC-CCcchHhhc
Q psy5328 18 LPTVSVIIIFTNEAW-SPLIRTILTTLMRTPDKLLHEVLLIDDAS-DKYGVGAFR 70 (76)
Q Consensus 18 ~p~vSVVip~~NE~~-~~L~~~l~svl~~~~~~~~~EiI~VDDgS-~D~tl~~~~ 70 (76)
.|.+=||-|.|+... ...+..+..-|...+. + ..|+|+||+ .-.....+|
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL~~V~n-L--hWIVVEd~~~~~p~v~~~L 137 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTLRLVPN-L--HWIVVEDGEGTTPEVSGIL 137 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHHhhcCC-e--eEEEEecCCCCCHHHHHHH
Confidence 578899999999873 2444555566666653 3 789999994 333334443
No 87
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=48.66 E-value=30 Score=21.45 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhhC-CCCCceEEEEEeCCCCCcchHhhcc
Q psy5328 33 SPLIRTILTTLMRT-PDKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 33 ~~L~~~l~svl~~~-~~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
+.+..++..++... .......|+++=||..+......++
T Consensus 78 t~l~~aL~~a~~~~~~~~~~~~IilltDG~~~~~~~~i~~ 117 (155)
T PF13768_consen 78 TDLLAALRAALALLQRPGCVRAIILLTDGQPVSGEEEILD 117 (155)
T ss_pred ccHHHHHHHHHHhcccCCCccEEEEEEeccCCCCHHHHHH
Confidence 46677777777653 2334568999999996444444444
No 88
>COG2237 Predicted membrane protein [Function unknown]
Probab=46.72 E-value=28 Score=26.38 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcch
Q psy5328 33 SPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGV 66 (76)
Q Consensus 33 ~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl 66 (76)
..+.+.+.++++...+. -+++|-||+.|+..
T Consensus 84 ~~l~~qld~vl~~~~pd---~av~VsDGaeDe~i 114 (364)
T COG2237 84 LKLSEQLDEVLSELDPD---DAVVVSDGAEDERI 114 (364)
T ss_pred HHHHHHHHHHHHcCCCc---EEEEeccCcccchh
Confidence 68999999999987764 49999999999975
No 89
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=44.97 E-value=44 Score=21.98 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=20.0
Q ss_pred EEEEEeee-cCCchHHHHHHHHHHhhCCCCCceEEEEEeCCC
Q psy5328 21 VSVIIIFT-NEAWSPLIRTILTTLMRTPDKLLHEVLLIDDAS 61 (76)
Q Consensus 21 vSVVip~~-NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS 61 (76)
+.|++|-. |.-+..+.+.+...+++.. +.+++.++++
T Consensus 2 i~vv~p~~~~~~~~~~~~~i~~~~~~~g----~~~~~~~~~~ 39 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAAHG----YTLLVASSGY 39 (268)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHHCC----CEEEEecCCC
Confidence 45666643 4334566666666665532 3555555443
No 90
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=44.30 E-value=38 Score=23.09 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=17.2
Q ss_pred EEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCC
Q psy5328 21 VSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDA 60 (76)
Q Consensus 21 vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDg 60 (76)
+|||+++-||+ .+-+.+.++-+...+ ..|.|-|++-
T Consensus 1 isiI~c~n~~~--~~~~~~~~i~~~~~~--~~~~i~i~~~ 36 (217)
T PF13712_consen 1 ISIIICVNDEE--LYEECLRSIKRLIGP--PGELIEIDNV 36 (217)
T ss_dssp EEEEEEES-HH--HHHHHHHHHHHTT----TEEEEEEE-S
T ss_pred CEEEEEECCHH--HHHHHHHHHHhhCCC--CceEEEEecc
Confidence 68777666664 344444444333222 2466666654
No 91
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=42.54 E-value=57 Score=26.59 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=26.9
Q ss_pred cEEEEEeeecCCchHHH---HHHHHHHhhCCCCCceEEEEEeCCCCCc
Q psy5328 20 TVSVIIIFTNEAWSPLI---RTILTTLMRTPDKLLHEVLLIDDASDKY 64 (76)
Q Consensus 20 ~vSVVip~~NE~~~~L~---~~l~svl~~~~~~~~~EiI~VDDgS~D~ 64 (76)
+..|++|.|||....+. |+...-++.|...-.+.+.++-| |+|.
T Consensus 145 rTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~FD~FVLSD-s~dp 191 (736)
T COG2943 145 RTAILMPIYNEDVNRVFAGLRATYESLAATGHAEHFDFFVLSD-SRDP 191 (736)
T ss_pred ceeEEeeccccCHHHHHHHHHHHHHHHHhhCCcccceEEEEcC-CCCc
Confidence 58899999999864443 44444455555433456666655 3443
No 92
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=42.13 E-value=1.2e+02 Score=21.41 Aligned_cols=46 Identities=11% Similarity=-0.117 Sum_probs=25.9
Q ss_pred EEEEeeecCC-c-h-HHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHh
Q psy5328 22 SVIIIFTNEA-W-S-PLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGA 68 (76)
Q Consensus 22 SVVip~~NE~-~-~-~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~ 68 (76)
-|..-+||.+ . + ....+|-.++....+. ..-|-+++.||+|+|-..
T Consensus 3 fIA~~l~~~~~iL~~~~~~~ll~li~~LGp~-nv~vSIyE~~S~D~T~~~ 51 (241)
T PF11735_consen 3 FIAANLYNNEDILPSLWGDALLELIRFLGPE-NVFVSIYESGSWDGTKEA 51 (241)
T ss_pred EEEEEcccCHhHHHHHHHHHHHHHHHHhCcC-eEEEEEEeCCCCccHHHH
Confidence 3444567444 1 2 2222444555544443 346779999999998543
No 93
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=41.37 E-value=62 Score=26.57 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=26.2
Q ss_pred cEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCC
Q psy5328 20 TVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASD 62 (76)
Q Consensus 20 ~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~ 62 (76)
...||||+.||.. ..+.-||..-|.. +=||+|-+-+.
T Consensus 56 ~~aivvp~k~e~~----~~~~gvl~~ip~~--c~ii~vsns~r 92 (694)
T PRK14502 56 KMAIVLPIKDEDL----KVFEGVLSGIPHD--CLMIVISNSSK 92 (694)
T ss_pred CcEEEEEcCCCch----hHHhhHhhcCCCC--CeEEEEeCCCC
Confidence 5899999999984 4455666666653 46777766655
No 94
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=40.27 E-value=75 Score=20.83 Aligned_cols=37 Identities=16% Similarity=-0.036 Sum_probs=24.0
Q ss_pred EEEEEeeecCC-chHHHHHHHHHHhhCCCCCceEEEEEeCCC
Q psy5328 21 VSVIIIFTNEA-WSPLIRTILTTLMRTPDKLLHEVLLIDDAS 61 (76)
Q Consensus 21 vSVVip~~NE~-~~~L~~~l~svl~~~~~~~~~EiI~VDDgS 61 (76)
+.||+|-++.. +..+...+...+++.. +.+++.....
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~~----~~~~~~~~~~ 39 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAAREAG----YAVTLSMLAE 39 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHHCC----CeEEEEeCCC
Confidence 56788877554 5677888888877642 3666665443
No 95
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=39.55 E-value=76 Score=22.41 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=30.1
Q ss_pred CcEEEEEeeecCCc--hHHHHHHHHHHhhCCCCCceEEEEEeCCC-CCcchHhhcc
Q psy5328 19 PTVSVIIIFTNEAW--SPLIRTILTTLMRTPDKLLHEVLLIDDAS-DKYGVGAFRQ 71 (76)
Q Consensus 19 p~vSVVip~~NE~~--~~L~~~l~svl~~~~~~~~~EiI~VDDgS-~D~tl~~~~~ 71 (76)
|.+-||-|.|.... ..|.|.-+.+ ...++ .-.|+|+|+. .-.....+|+
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL-~lVp~---l~WIVVEd~~~~t~~va~lL~ 52 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTL-RLVPP---LHWIVVEDSEEKTPLVAELLR 52 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHH-hcCCc---eEEEEEeCCCCCCHHHHHHHH
Confidence 45778889997763 3555544444 34443 3789999998 4333454443
No 96
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=38.56 E-value=51 Score=21.37 Aligned_cols=38 Identities=13% Similarity=0.286 Sum_probs=23.9
Q ss_pred EEEEEeee-cCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCC
Q psy5328 21 VSVIIIFT-NEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASD 62 (76)
Q Consensus 21 vSVVip~~-NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~ 62 (76)
+.+|+|-. +..+..+.+.+...+++. .+++++++..++
T Consensus 2 ig~i~p~~~~~~~~~~~~~~~~~a~~~----g~~~~~~~~~~~ 40 (267)
T cd01536 2 IGLVVPSLNNPFWQAMNKGAEAAAKEL----GVELIVLDAQND 40 (267)
T ss_pred EEEEeccccCHHHHHHHHHHHHHHHhc----CceEEEECCCCC
Confidence 56777764 333467777777777652 247777776653
No 97
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.15 E-value=74 Score=20.92 Aligned_cols=36 Identities=11% Similarity=0.177 Sum_probs=20.1
Q ss_pred EEEEEeeecCC-chHHHHHHHHHHhhCCCCCceEEEEEeCC
Q psy5328 21 VSVIIIFTNEA-WSPLIRTILTTLMRTPDKLLHEVLLIDDA 60 (76)
Q Consensus 21 vSVVip~~NE~-~~~L~~~l~svl~~~~~~~~~EiI~VDDg 60 (76)
+.|++|-.+.. +..+.+.+...+++.. +++++.+..
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g----~~~~~~~~~ 38 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAG----YDVVLSESG 38 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcC----CeEEEecCC
Confidence 56666665443 4566666666665532 355555443
No 98
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.11 E-value=67 Score=21.22 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=23.0
Q ss_pred EEEEEeeecC-CchHHHHHHHHHHhhCCCCCceEEEEEeCCCC
Q psy5328 21 VSVIIIFTNE-AWSPLIRTILTTLMRTPDKLLHEVLLIDDASD 62 (76)
Q Consensus 21 vSVVip~~NE-~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~ 62 (76)
+.+|+|-... -+..+.+.+...+++.. +.+++.+..+.
T Consensus 2 Ig~i~p~~~~~~~~~~~~~i~~~~~~~g----~~~~~~~~~~~ 40 (263)
T cd06280 2 VGLIVADIRNPFFTAVSRAVEDAAYRAG----LRVILCNTDED 40 (263)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHCC----CEEEEEeCCCC
Confidence 5677776543 34677777777777643 35666654433
No 99
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.10 E-value=82 Score=20.85 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=20.2
Q ss_pred EEEEEeee-cCCchHHHHHHHHHHhhCCCCCceEEEEEeCC
Q psy5328 21 VSVIIIFT-NEAWSPLIRTILTTLMRTPDKLLHEVLLIDDA 60 (76)
Q Consensus 21 vSVVip~~-NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDg 60 (76)
+.||+|-+ |.-+..+.+.+...+++.. +.+++.+.+
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~~g----~~~~~~~~~ 38 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRAAG----YSLLIANSL 38 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcC----CEEEEEeCC
Confidence 56666654 4434666677766666532 355555443
No 100
>COG2106 Uncharacterized conserved protein [Function unknown]
Probab=36.04 E-value=72 Score=23.28 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=17.7
Q ss_pred eEEEEEeCCCCCc----chHhhcccCCCC
Q psy5328 52 HEVLLIDDASDKY----GVGAFRQPLNQP 76 (76)
Q Consensus 52 ~EiI~VDDgS~D~----tl~~~~~~~~~~ 76 (76)
-|||+.+|+..+. .+..+|++.+-|
T Consensus 41 ~eIii~~D~~~~~~~~~~i~~lL~Y~~TP 69 (272)
T COG2106 41 DEIIIYEDGDDVRRDAKFITTLLEYFETP 69 (272)
T ss_pred cEEEEEeCCCCccchhHHHHHHHHHhcCC
Confidence 4999999998876 245666655543
No 101
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=35.81 E-value=31 Score=23.23 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=15.8
Q ss_pred eecCCchHHHHHHHHHHhh
Q psy5328 27 FTNEAWSPLIRTILTTLMR 45 (76)
Q Consensus 27 ~~NE~~~~L~~~l~svl~~ 45 (76)
.|||....|.|+++++++.
T Consensus 1 mYNEd~~ll~rTL~gv~~N 19 (163)
T PF01644_consen 1 MYNEDEILLARTLHGVMKN 19 (163)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4999877889999988873
No 102
>KOG1413|consensus
Probab=34.54 E-value=89 Score=24.05 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=39.6
Q ss_pred CCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 17 DLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 17 ~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
.+|-+-||+=..|.+ ..|.+++.+++...|....+-||+--||+.-.+-+++
T Consensus 65 ~~~v~pvvVf~csR~-~~lr~~v~kll~yrPsaekfpiiVSQD~~~e~vk~~~ 116 (411)
T KOG1413|consen 65 WPPVIPVVVFACSRA-DALRRHVKKLLEYRPSAEKFPIIVSQDCEKEAVKKKL 116 (411)
T ss_pred CCCceeEEEEecCcH-HHHHHHHHHHHHhCcchhhcCEEEeccCCcHHHHHHH
Confidence 345677777778886 6999999999988776656788888999876554444
No 103
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.38 E-value=1.1e+02 Score=20.27 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=18.1
Q ss_pred EEEEEeeecCC-chHHHHHHHHHHhhCCCCCceEEEEEeC
Q psy5328 21 VSVIIIFTNEA-WSPLIRTILTTLMRTPDKLLHEVLLIDD 59 (76)
Q Consensus 21 vSVVip~~NE~-~~~L~~~l~svl~~~~~~~~~EiI~VDD 59 (76)
+.||+|-.+.. +..+.+.+...+++.. +++++.+.
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g----~~~~~~~~ 37 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQYG----YTVLLCNT 37 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHCC----CEEEEEeC
Confidence 45566654322 3566666666666532 35555443
No 104
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=32.53 E-value=26 Score=17.66 Aligned_cols=12 Identities=25% Similarity=0.194 Sum_probs=9.2
Q ss_pred cEEEEEeeecCC
Q psy5328 20 TVSVIIIFTNEA 31 (76)
Q Consensus 20 ~vSVVip~~NE~ 31 (76)
.+-|.+|+||+.
T Consensus 8 gvgvl~pvy~~k 19 (36)
T PF09151_consen 8 GVGVLEPVYNQK 19 (36)
T ss_dssp SSSBEEEEE-TT
T ss_pred CceEEEEeecCC
Confidence 467899999996
No 105
>PLN02893 Cellulose synthase-like protein
Probab=31.14 E-value=1e+02 Score=25.49 Aligned_cols=56 Identities=23% Similarity=0.230 Sum_probs=43.5
Q ss_pred CCCCcEEEEEee---ecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcc
Q psy5328 16 EDLPTVSVIIIF---TNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 16 ~~~p~vSVVip~---~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
..+|.+-|.|+. +.|..-....++-|+|+-.++.-..-+-+=|||.+.-|+..+.+
T Consensus 98 ~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~E 156 (734)
T PLN02893 98 SDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFME 156 (734)
T ss_pred ccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHH
Confidence 458999999987 66654577889999999887755567889999988877765544
No 106
>KOG2733|consensus
Probab=28.21 E-value=1.2e+02 Score=23.44 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=40.7
Q ss_pred CCCcEEEEEeeecCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcc
Q psy5328 17 DLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 17 ~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
..+.+|+-|.-.||. .|-+-+..+-+.+..++.-++|+|=|.++-.++.+.-.
T Consensus 30 ~~~~~slavAGRn~~--KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak 82 (423)
T KOG2733|consen 30 VFEGLSLAVAGRNEK--KLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAK 82 (423)
T ss_pred cccCceEEEecCCHH--HHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHh
Confidence 356788889889985 66666676666776666678999999999888877654
No 107
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=28.00 E-value=52 Score=21.49 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=18.3
Q ss_pred EEEEEeCCCCCcchHhhcccC
Q psy5328 53 EVLLIDDASDKYGVGAFRQPL 73 (76)
Q Consensus 53 EiI~VDDgS~D~tl~~~~~~~ 73 (76)
.-|-|++-|.++||..+|..+
T Consensus 73 G~I~V~~dS~pGTLN~fL~~~ 93 (134)
T PF08400_consen 73 GDITVYEDSKPGTLNDFLTAP 93 (134)
T ss_pred EEEEEecCCCCCcHHHHhhcc
Confidence 678899999999999999754
No 108
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=27.89 E-value=1.4e+02 Score=20.25 Aligned_cols=37 Identities=30% Similarity=0.209 Sum_probs=25.1
Q ss_pred CcEEEEEeee-cCCchHHHHHHHHHHhhCCCCCceEEEEEeC
Q psy5328 19 PTVSVIIIFT-NEAWSPLIRTILTTLMRTPDKLLHEVLLIDD 59 (76)
Q Consensus 19 p~vSVVip~~-NE~~~~L~~~l~svl~~~~~~~~~EiI~VDD 59 (76)
..+.+|+|-. |.-+..+...+...+.+.. +.+++.+-
T Consensus 36 ~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g----~~~~~~~~ 73 (309)
T PRK11041 36 RTILVIVPDICDPFFSEIIRGIEVTAAEHG----YLVLIGDC 73 (309)
T ss_pred cEEEEEeCCCcCccHHHHHHHHHHHHHHCC----CEEEEEeC
Confidence 4688888854 5545788888888887643 35665543
No 109
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=27.86 E-value=1.3e+02 Score=19.60 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=21.9
Q ss_pred EEEEEeeecC-CchHHHHHHHHHHhhCCCCCceEEEEEeCC
Q psy5328 21 VSVIIIFTNE-AWSPLIRTILTTLMRTPDKLLHEVLLIDDA 60 (76)
Q Consensus 21 vSVVip~~NE-~~~~L~~~l~svl~~~~~~~~~EiI~VDDg 60 (76)
+.+|+|-.+. -+..+...+...+++.. +.+++++.+
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~~g----~~~~~~~~~ 38 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAREAG----YGVLLGDTR 38 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHcC----CeEEEecCC
Confidence 5567776533 35677777777776632 366666654
No 110
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=27.82 E-value=81 Score=20.92 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=18.3
Q ss_pred EEEEEee-ecCCchHHHHHHHHHHhhCCCCCceEEEEE
Q psy5328 21 VSVIIIF-TNEAWSPLIRTILTTLMRTPDKLLHEVLLI 57 (76)
Q Consensus 21 vSVVip~-~NE~~~~L~~~l~svl~~~~~~~~~EiI~V 57 (76)
+.||+|- .|+-+..+...+.+.+++.. +++++.
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g----~~~~~~ 35 (275)
T cd06320 2 YGVVLKTLSNEFWRSLKEGYENEAKKLG----VSVDIQ 35 (275)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHHHHhC----CeEEEE
Confidence 5566663 34435666666666666532 355554
No 111
>PLN02458 transferase, transferring glycosyl groups
Probab=27.55 E-value=2e+02 Score=21.80 Aligned_cols=51 Identities=20% Similarity=0.157 Sum_probs=31.3
Q ss_pred CCcEEEEEeeecC-C--chHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcc
Q psy5328 18 LPTVSVIIIFTNE-A--WSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQ 71 (76)
Q Consensus 18 ~p~vSVVip~~NE-~--~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~ 71 (76)
.+.+=||-|.|.. . ...|.|.-+ .|...++.+ -.|+|+|++.-....++|.
T Consensus 111 ~rlIivVTPTY~rR~~Q~a~LTRLah-TL~lVp~pL--~WIVVEd~~~t~~va~lLr 164 (346)
T PLN02458 111 RRLVIIVTPISTKDRYQGVLLRRLAN-TLRLVPPPL--LWIVVEGQSDSEEVSEMLR 164 (346)
T ss_pred CceEEEECCCCCCcchhHHHHHHHHH-HHhcCCCCc--eEEEEeCCCCCHHHHHHHH
Confidence 3468889999983 3 235554444 444444333 7899999876555555554
No 112
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=27.10 E-value=1.1e+02 Score=18.52 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhhcccCCCC
Q psy5328 34 PLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQPLNQP 76 (76)
Q Consensus 34 ~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~~~~~~~~ 76 (76)
.+...+.+++++.+.. =++++.+......+..+++.|++|
T Consensus 55 ~~~~~l~~l~~~~~~~---Pvlllg~~~~~~~~~nvvg~Le~P 94 (109)
T PF06490_consen 55 KLAELLKELLKWAPHI---PVLLLGEHDSPEELPNVVGELEEP 94 (109)
T ss_pred hHHHHHHHHHhhCCCC---CEEEECCCCccccccCeeEecCCC
Confidence 4566677777766542 245555544436677788888876
No 113
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=26.90 E-value=38 Score=23.97 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=10.4
Q ss_pred eEEEEEeCCCCCc
Q psy5328 52 HEVLLIDDASDKY 64 (76)
Q Consensus 52 ~EiI~VDDgS~D~ 64 (76)
.-+|+||||.--+
T Consensus 125 ~~VIlVDDGiATG 137 (220)
T COG1926 125 RTVILVDDGIATG 137 (220)
T ss_pred CEEEEEeCCcchh
Confidence 5799999997544
No 114
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=26.85 E-value=96 Score=19.49 Aligned_cols=42 Identities=21% Similarity=0.168 Sum_probs=24.8
Q ss_pred EEEEEeee--cCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCCCc
Q psy5328 21 VSVIIIFT--NEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKY 64 (76)
Q Consensus 21 vSVVip~~--NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~ 64 (76)
+.+++|.. +..+..+.+.+...++... ..+++++++...+..
T Consensus 2 Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~ 45 (269)
T cd01391 2 IGVLLPLSGSAPFGAQLLAGIELAAEEIG--RGLEVILADSQSDPE 45 (269)
T ss_pred ceEEeecCCCcHHHHHHHHHHHHHHHHhC--CceEEEEecCCCCHH
Confidence 56677765 2223566666666666531 235888887766543
No 115
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.79 E-value=1.4e+02 Score=19.46 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=4.6
Q ss_pred HHHHHHHHHHh
Q psy5328 34 PLIRTILTTLM 44 (76)
Q Consensus 34 ~L~~~l~svl~ 44 (76)
.+...+...++
T Consensus 21 ~~~~~~~~~~~ 31 (270)
T cd06294 21 EVLRGISAVAN 31 (270)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 116
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=26.30 E-value=2.1e+02 Score=19.33 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=26.2
Q ss_pred EEEeeecCC-chHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcc
Q psy5328 23 VIIIFTNEA-WSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYG 65 (76)
Q Consensus 23 VVip~~NE~-~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~t 65 (76)
|++.+-+.. ...+.-++.|+++.+.. ...+.++.|+-+++.
T Consensus 3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~ 44 (246)
T cd00505 3 IVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTF 44 (246)
T ss_pred EEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHH
Confidence 444444432 36778888899887654 357888888755443
No 117
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=25.94 E-value=1.6e+02 Score=19.19 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=11.7
Q ss_pred EEEEEeeecCC-chHHHHHHHHHHhh
Q psy5328 21 VSVIIIFTNEA-WSPLIRTILTTLMR 45 (76)
Q Consensus 21 vSVVip~~NE~-~~~L~~~l~svl~~ 45 (76)
+.||+|-.... +..+.+.+...+..
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~ 27 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYE 27 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHH
Confidence 44555543222 24555555555543
No 118
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=25.90 E-value=1.7e+02 Score=21.14 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=38.2
Q ss_pred CCCCcEEEEEeeecCCch----------------------HHHHHHHHHHhhCCCCCceEEEEEeCCCCCc--chHhhcc
Q psy5328 16 EDLPTVSVIIIFTNEAWS----------------------PLIRTILTTLMRTPDKLLHEVLLIDDASDKY--GVGAFRQ 71 (76)
Q Consensus 16 ~~~p~vSVVip~~NE~~~----------------------~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~--tl~~~~~ 71 (76)
..-|.+.++-|.|..... .-.|.+.+-+...+..-.+.|++||+.-.-+ ....+++
T Consensus 67 ~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK 146 (314)
T PRK07399 67 GNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLK 146 (314)
T ss_pred CCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHH
Confidence 445788889887632210 1235566666665543357999999975433 3566777
Q ss_pred cCCCC
Q psy5328 72 PLNQP 76 (76)
Q Consensus 72 ~~~~~ 76 (76)
-||.|
T Consensus 147 ~LEEP 151 (314)
T PRK07399 147 TLEEP 151 (314)
T ss_pred HHhCC
Confidence 77765
No 119
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=25.16 E-value=1.8e+02 Score=18.88 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=27.1
Q ss_pred eecCC-chHHHHHHHHHHhhCCCCCceEEEEEeCCCCCcchHhh
Q psy5328 27 FTNEA-WSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAF 69 (76)
Q Consensus 27 ~~NE~-~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~D~tl~~~ 69 (76)
+.|.. ...+.-.+.|++..++......+.+++|+.+++..+.+
T Consensus 5 ~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l 48 (250)
T PF01501_consen 5 ACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKL 48 (250)
T ss_dssp ECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHH
Confidence 44554 35667778888887764234678888888776655444
No 120
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=24.80 E-value=1.6e+02 Score=17.47 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=35.5
Q ss_pred CCCCcEEEEEeeecCCchHHHHHHHHHHhhCCCC-CceEEEEEeCCCCCcchHhhc
Q psy5328 16 EDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDK-LLHEVLLIDDASDKYGVGAFR 70 (76)
Q Consensus 16 ~~~p~vSVVip~~NE~~~~L~~~l~svl~~~~~~-~~~EiI~VDDgS~D~tl~~~~ 70 (76)
...|..-|++-+.++....+.+.+..++....+. ....++.+|+ .|+-.+...
T Consensus 46 ~~~~~~li~vd~~~~~~~~~~~~i~~~~~~~~~~~~~vd~~~~~~--~~~~~~~~~ 99 (108)
T PF14581_consen 46 DEQPSLLIGVDFDGEDIEEIFQEIGRAARPYLPDGWPVDFVLLDD--EDPLAKWII 99 (108)
T ss_pred CCCceEEEEEeccChhHHHHHHHHHHHhhhcCCCCceEEEEEccC--CCcHHHHHH
Confidence 4456788888888734568888888877764332 4578999997 444444443
No 121
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=24.75 E-value=26 Score=29.17 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=14.1
Q ss_pred CCCCcEEEEEeeecCC
Q psy5328 16 EDLPTVSVIIIFTNEA 31 (76)
Q Consensus 16 ~~~p~vSVVip~~NE~ 31 (76)
..||+.||.+|.|+|.
T Consensus 31 ~~M~sfsVLtP~Y~E~ 46 (817)
T PF02364_consen 31 EKMPSFSVLTPYYSEK 46 (817)
T ss_pred hhccccccccccccce
Confidence 4588999999999997
No 122
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.71 E-value=1.4e+02 Score=20.26 Aligned_cols=36 Identities=14% Similarity=0.189 Sum_probs=19.9
Q ss_pred EEEEEeee-cCCchHHHHHHHHHHhhCCCCCceEEEEEeCC
Q psy5328 21 VSVIIIFT-NEAWSPLIRTILTTLMRTPDKLLHEVLLIDDA 60 (76)
Q Consensus 21 vSVVip~~-NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDg 60 (76)
+.||+|-+ |.-|..+.+.+...++... +.+++.+-+
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g----~~~~~~~~~ 38 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKELG----AEVIVQNAN 38 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHcC----CEEEEECCC
Confidence 56666644 3335666666666665532 355555543
No 123
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=24.48 E-value=2e+02 Score=18.44 Aligned_cols=40 Identities=30% Similarity=0.484 Sum_probs=21.8
Q ss_pred HHHHHHHhhCCCCCceEEEEEeCCCCC--cchHhhcccCCCC
Q psy5328 37 RTILTTLMRTPDKLLHEVLLIDDASDK--YGVGAFRQPLNQP 76 (76)
Q Consensus 37 ~~l~svl~~~~~~~~~EiI~VDDgS~D--~tl~~~~~~~~~~ 76 (76)
+.+...+...+..-.+-||+||+.-.- .....++..||.|
T Consensus 82 ~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~ 123 (188)
T TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEP 123 (188)
T ss_pred HHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCC
Confidence 333444444432224689999986432 2355666666643
No 124
>COG0350 Ada Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]
Probab=24.37 E-value=38 Score=22.53 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=8.5
Q ss_pred cEEEEEeeec
Q psy5328 20 TVSVIIIFTN 29 (76)
Q Consensus 20 ~vSVVip~~N 29 (76)
.++||||||-
T Consensus 132 Pl~IiIPCHR 141 (168)
T COG0350 132 PLPIIIPCHR 141 (168)
T ss_pred CceEEecCeE
Confidence 4999999993
No 125
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=24.32 E-value=1.6e+02 Score=20.58 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=26.1
Q ss_pred CcEEEEEeee-cCCchHHHHHHHHHHhhCCCCCceEEEEEeCCCC
Q psy5328 19 PTVSVIIIFT-NEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASD 62 (76)
Q Consensus 19 p~vSVVip~~-NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDgS~ 62 (76)
..+.|++|-+ |.-+..+.+.+...+++.. +.+++.+.++.
T Consensus 60 ~~Igvi~~~~~~~f~~~l~~gi~~~~~~~g----y~~~~~~~~~~ 100 (346)
T PRK10401 60 DTIGVVVMDVSDAFFGALVKAVDLVAQQHQ----KYVLIGNSYHE 100 (346)
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHCC----CEEEEEcCCCC
Confidence 3688888754 4445678888888877642 46777665543
No 126
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=23.81 E-value=1.9e+02 Score=20.14 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=21.7
Q ss_pred EEEEee-ecCCchHHHHHHHHHHhhCCCCCceEEEEEeCC
Q psy5328 22 SVIIIF-TNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDA 60 (76)
Q Consensus 22 SVVip~-~NE~~~~L~~~l~svl~~~~~~~~~EiI~VDDg 60 (76)
||||-. |+.. ..|.+.|.++ ++.+ ...||++|=.+
T Consensus 2 Tvvi~t~~~R~-~~L~~~l~~l-~~~~--~l~~IvVvWn~ 37 (247)
T PF09258_consen 2 TVVINTSYKRS-DLLKRLLRHL-ASSP--SLRKIVVVWNN 37 (247)
T ss_dssp EEEEEE-SS-H-HHHHHHHHHH-TTST--TEEEEEEEEE-
T ss_pred EEEEEecccch-HHHHHHHHHH-HcCC--CCCeEEEEeCC
Confidence 677877 6553 5777777777 3433 35788887433
No 127
>PLN02692 alpha-galactosidase
Probab=23.19 E-value=82 Score=24.20 Aligned_cols=28 Identities=21% Similarity=0.024 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEEeCCC
Q psy5328 34 PLIRTILTTLMRTPDKLLHEVLLIDDAS 61 (76)
Q Consensus 34 ~L~~~l~svl~~~~~~~~~EiI~VDDgS 61 (76)
.+.+....+.+......-||.|.||||=
T Consensus 74 ~i~~~ad~~~~~gl~~~Gy~yv~iDDgW 101 (412)
T PLN02692 74 MIKETADALVSTGLSKLGYTYVNIDDCW 101 (412)
T ss_pred HHHHHHHHHHhccchhcCcEEEEEcCCc
Confidence 4555555454433333458999999983
No 128
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=23.19 E-value=87 Score=16.16 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=15.5
Q ss_pred ceEEEEEeCCCCCcchHhhcccC
Q psy5328 51 LHEVLLIDDASDKYGVGAFRQPL 73 (76)
Q Consensus 51 ~~EiI~VDDgS~D~tl~~~~~~~ 73 (76)
.+.|.++|.|+...--..-+.+|
T Consensus 31 ~~~V~f~D~G~~~~v~~~~l~~l 53 (57)
T smart00333 31 LYEVFFIDYGNEEVVPPSDLRPL 53 (57)
T ss_pred EEEEEEECCCccEEEeHHHeecC
Confidence 46899999998865444444443
No 129
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=22.97 E-value=1.6e+02 Score=19.46 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=22.8
Q ss_pred EEEEEeeecCCchHHHHHHHHHHhhCCCC--CceEEEEEeCCCCC
Q psy5328 21 VSVIIIFTNEAWSPLIRTILTTLMRTPDK--LLHEVLLIDDASDK 63 (76)
Q Consensus 21 vSVVip~~NE~~~~L~~~l~svl~~~~~~--~~~EiI~VDDgS~D 63 (76)
+-|++|.-|.-+..+.+.+...++..... ...++++.|.++..
T Consensus 2 igv~~~~~~~~~~~~~~gi~~~~~~~g~~~g~~v~l~~~~~~~~~ 46 (281)
T cd06325 2 VGILQLVEHPALDAARKGFKDGLKEAGYKEGKNVKIDYQNAQGDQ 46 (281)
T ss_pred eEEecCCCCcchHHHHHHHHHHHHHhCccCCceEEEEEecCCCCH
Confidence 44566644444566777777766654210 12356666665443
No 130
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=22.83 E-value=2e+02 Score=21.56 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=6.3
Q ss_pred CCcEEEEEeee
Q psy5328 18 LPTVSVIIIFT 28 (76)
Q Consensus 18 ~p~vSVVip~~ 28 (76)
|+.+++|||+-
T Consensus 1 m~~~~~iiPv~ 11 (346)
T COG4092 1 MQPNGEIIPVA 11 (346)
T ss_pred CCCcceEeecc
Confidence 34566666664
No 131
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ]. It is found in association with IPR001320 from INTERPRO. ; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 4E0W_A 3S9E_A 3QXM_B 2F34_A 3C34_B 3S2V_A 3GBB_B 2F36_D 4E0X_A 1TXF_A ....
Probab=22.57 E-value=1.2e+02 Score=17.16 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEEeCC
Q psy5328 34 PLIRTILTTLMRTPDKLLHEVLLIDDA 60 (76)
Q Consensus 34 ~L~~~l~svl~~~~~~~~~EiI~VDDg 60 (76)
.|++.|...++ +.+|+.+|-||
T Consensus 24 Dll~~la~~l~-----F~y~i~~~~Dg 45 (65)
T PF10613_consen 24 DLLEELAEELN-----FTYEIYLVPDG 45 (65)
T ss_dssp HHHHHHHHHHT------EEEEEE-TTS
T ss_pred HHHHHHHHHcC-----CeEEEEECCCC
Confidence 45555555553 56799999996
No 132
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.89 E-value=2e+02 Score=18.70 Aligned_cols=36 Identities=8% Similarity=0.007 Sum_probs=20.2
Q ss_pred EEEEEeee-cCC-chHHHHHHHHHHhhCCCCCceEEEEEeCC
Q psy5328 21 VSVIIIFT-NEA-WSPLIRTILTTLMRTPDKLLHEVLLIDDA 60 (76)
Q Consensus 21 vSVVip~~-NE~-~~~L~~~l~svl~~~~~~~~~EiI~VDDg 60 (76)
|.+|+|-. +.. +..+.+.+...+++.. +.+++.+..
T Consensus 2 ig~v~~~~~~~~~~~~~~~~i~~~~~~~g----~~~~~~~~~ 39 (269)
T cd06288 2 IGLISDEIATTPFAVEIILGAQDAAREHG----YLLLVVNTG 39 (269)
T ss_pred eEEEeCCCCCCccHHHHHHHHHHHHHHCC----CEEEEEeCC
Confidence 55677765 333 4567777777666532 355555433
No 133
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=21.85 E-value=1.5e+02 Score=21.64 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=22.8
Q ss_pred cEEEEEeeecCC-chHHHHHHHHHHhhCCCC
Q psy5328 20 TVSVIIIFTNEA-WSPLIRTILTTLMRTPDK 49 (76)
Q Consensus 20 ~vSVVip~~NE~-~~~L~~~l~svl~~~~~~ 49 (76)
++.|=||--... .+.|..+|.|+++...+.
T Consensus 53 ~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~ 83 (297)
T PF04666_consen 53 KLCIGIPTVKREKESYLLDTLASLLDGLSPE 83 (297)
T ss_pred eEEEEecccccCCCchHHHHHHHHHHhCCHH
Confidence 478888875433 479999999999987653
No 134
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.59 E-value=1.6e+02 Score=19.43 Aligned_cols=36 Identities=8% Similarity=0.125 Sum_probs=16.7
Q ss_pred EEEEEeeecCC-chHHHHHHHHHHhhCCCCCceEEEEEeCC
Q psy5328 21 VSVIIIFTNEA-WSPLIRTILTTLMRTPDKLLHEVLLIDDA 60 (76)
Q Consensus 21 vSVVip~~NE~-~~~L~~~l~svl~~~~~~~~~EiI~VDDg 60 (76)
+.||+|-+... +..+.+.+...+++.. +++++.++.
T Consensus 2 i~vi~~~~~~~~~~~~~~~i~~~~~~~g----~~~~~~~~~ 38 (277)
T cd06319 2 IAYIVSDLRIPFWQIMGRGVKSKAKALG----YDAVELSAE 38 (277)
T ss_pred eEEEeCCCCchHHHHHHHHHHHHHHhcC----CeEEEecCC
Confidence 44555543222 3455555555555422 355555443
No 135
>KOG3925|consensus
Probab=20.99 E-value=1.3e+02 Score=22.89 Aligned_cols=9 Identities=33% Similarity=0.951 Sum_probs=7.8
Q ss_pred ceEEEEEeC
Q psy5328 51 LHEVLLIDD 59 (76)
Q Consensus 51 ~~EiI~VDD 59 (76)
.-|||+.||
T Consensus 104 V~Eiivldd 112 (371)
T KOG3925|consen 104 VDEIIVLDD 112 (371)
T ss_pred ceeEEEecc
Confidence 459999999
No 136
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.97 E-value=1.7e+02 Score=19.28 Aligned_cols=37 Identities=8% Similarity=0.024 Sum_probs=17.9
Q ss_pred EEEEEeeecCC-chHHHHHHHHHHhhCCCCCceEEEEEeC
Q psy5328 21 VSVIIIFTNEA-WSPLIRTILTTLMRTPDKLLHEVLLIDD 59 (76)
Q Consensus 21 vSVVip~~NE~-~~~L~~~l~svl~~~~~~~~~EiI~VDD 59 (76)
+.||+|-.+.. +..+.+.+.+.+++.. ..+.+++.+.
T Consensus 2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~~--~~~~~~~~~~ 39 (271)
T cd06321 2 IGVSVGDLGNPFFVALAKGAEAAAKKLN--PGVKVTVVSA 39 (271)
T ss_pred eEEEecccCCHHHHHHHHHHHHHHHHhC--CCeEEEEccC
Confidence 45555544222 3556666666665532 1235555443
No 137
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=20.85 E-value=35 Score=22.76 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=15.4
Q ss_pred EEEEEeCC-CCCcchHhhcccC
Q psy5328 53 EVLLIDDA-SDKYGVGAFRQPL 73 (76)
Q Consensus 53 EiI~VDDg-S~D~tl~~~~~~~ 73 (76)
-+++|||- +|=+|+....+-+
T Consensus 118 rVlIVDDllaTGgT~~a~~~Ll 139 (179)
T COG0503 118 RVLIVDDLLATGGTALALIELL 139 (179)
T ss_pred EEEEEecchhcChHHHHHHHHH
Confidence 79999998 7777776655433
No 138
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=20.18 E-value=99 Score=22.63 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=36.3
Q ss_pred CCCcEEEEEeeecCC-c-hHHHHHHHHHHhhCCCCCceEEEEEeCCCC--CcchHhhcccCCCC
Q psy5328 17 DLPTVSVIIIFTNEA-W-SPLIRTILTTLMRTPDKLLHEVLLIDDASD--KYGVGAFRQPLNQP 76 (76)
Q Consensus 17 ~~p~vSVVip~~NE~-~-~~L~~~l~svl~~~~~~~~~EiI~VDDgS~--D~tl~~~~~~~~~~ 76 (76)
.-|.+..|.|--+.. . -.=.|.+..-+..++..-.+.|++||+.-. ......+|+-||.|
T Consensus 72 ~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP 135 (334)
T PRK07993 72 THPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP 135 (334)
T ss_pred CCCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC
Confidence 347787777743211 1 123445555555555433579999997744 44567888888776
No 139
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.11 E-value=2.5e+02 Score=18.36 Aligned_cols=25 Identities=8% Similarity=0.146 Sum_probs=11.7
Q ss_pred EEEEEeeecC-CchHHHHHHHHHHhh
Q psy5328 21 VSVIIIFTNE-AWSPLIRTILTTLMR 45 (76)
Q Consensus 21 vSVVip~~NE-~~~~L~~~l~svl~~ 45 (76)
+.||+|-.+. -+..+...+.+.+++
T Consensus 2 igvi~p~~~~~~~~~~~~gi~~~~~~ 27 (265)
T cd06285 2 IGVLVPRLTDTVMATMYEGIEEAAAE 27 (265)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHH
Confidence 4455554322 234555555555544
No 140
>smart00039 CRF corticotropin-releasing factor.
Probab=20.01 E-value=28 Score=18.27 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=8.9
Q ss_pred CCcEEEEEeee
Q psy5328 18 LPTVSVIIIFT 28 (76)
Q Consensus 18 ~p~vSVVip~~ 28 (76)
.|.+||+.||+
T Consensus 2 ~PslSIdl~~~ 12 (40)
T smart00039 2 GPSLSIDLTFD 12 (40)
T ss_pred CCCcccccHHH
Confidence 57899988875
Done!