RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5328
(76 letters)
>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
mucin-type O-linked glycans. UDP-GalNAc: polypeptide
alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
initiate the formation of mucin-type, O-linked glycans
by catalyzing the transfer of
alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
hydroxyl groups of Ser or Thr residues of core proteins
to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
enzymes are type II membrane proteins with a GT-A type
catalytic domain and a lectin domain located on the
lumen side of the Golgi apparatus. In human, there are
15 isozymes of pp-GalNAc-Ts, representing the largest
of all glycosyltransferase families. Each isozyme has
unique but partially redundant substrate specificity
for glycosylation sites on acceptor proteins.
Length = 299
Score = 68.4 bits (168), Expect = 1e-15
Identities = 25/42 (59%), Positives = 33/42 (78%)
Query: 22 SVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDK 63
SVIIIF NEA S L+RT+ + + RTP +LL E++L+DD SDK
Sbjct: 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDK 42
>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2.
Diverse family, transferring sugar from UDP-glucose,
UDP-N-acetyl- galactosamine, GDP-mannose or
CDP-abequose, to a range of substrates including
cellulose, dolichol phosphate and teichoic acids.
Length = 168
Score = 30.9 bits (70), Expect = 0.032
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 22 SVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDAS 61
SVII NE L T+ + L +T E++++DD S
Sbjct: 1 SVIIPTYNEE-KYLEETLESLLNQTYKNF--EIIVVDDGS 37
>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 229
Score = 28.0 bits (63), Expect = 0.31
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 23 VIIIFTNEAWSPLIRTILTTLMRT--PDKLLHEVLLIDDAS 61
V+I NEA + + +L +L P + EV+L+DD S
Sbjct: 1 VVIAARNEAEN--LPRLLQSLSALDYPKEKF-EVILVDDHS 38
>gnl|CDD|223539 COG0463, WcaA, Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 291
Score = 27.7 bits (60), Expect = 0.54
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 17 DLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASD 62
+P VSV+I NE L + + L +T E++++DD S
Sbjct: 1 MMPKVSVVIPTYNEE-EYLPEALESLLNQTYKDF--EIIVVDDGST 43
>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose
synthase (CESA) superfamily. This is a subfamily of
cellulose synthase (CESA) superfamily. CESA
superfamily includes a wide variety of
glycosyltransferase family 2 enzymes that share the
common characteristic of catalyzing the elongation of
polysaccharide chains. The members of the superfamily
include cellulose synthase catalytic subunit, chitin
synthase, glucan biosynthesis protein and other
families of CESA-like proteins.
Length = 251
Score = 26.4 bits (59), Expect = 1.2
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 11/53 (20%)
Query: 15 DEDLPTVSVIIIFTNEAWSPLIRTILTTL-----MRTPDKLLHEVLLIDDASD 62
LPTV++II NE I L + P L E++++ D S
Sbjct: 25 PAYLPTVTIIIPAYNEE-----AVIEAKLENLLALDYPRDRL-EIIVVSDGST 71
>gnl|CDD|237739 PRK14510, PRK14510, putative bifunctional
4-alpha-glucanotransferase/glycogen debranching enzyme;
Provisional.
Length = 1221
Score = 26.4 bits (58), Expect = 1.4
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 47 PDKLLHEVLLI----DDASDKYGVGAFRQ 71
D +L + +I DD Y G F Q
Sbjct: 367 QDPVLRRLKMIAEVWDDGLGGYQYGKFPQ 395
>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A
(GT-A) includes diverse families of glycosyl
transferases with a common GT-A type structural fold.
Glycosyltransferases (GTs) are enzymes that synthesize
oligosaccharides, polysaccharides, and glycoconjugates
by transferring the sugar moiety from an activated
nucleotide-sugar donor to an acceptor molecule, which
may be a growing oligosaccharide, a lipid, or a
protein. Based on the stereochemistry of the donor and
acceptor molecules, GTs are classified as either
retaining or inverting enzymes. To date, all GT
structures adopt one of two possible folds, termed GT-A
fold and GT-B fold. This hierarchy includes diverse
families of glycosyl transferases with a common GT-A
type structural fold, which has two tightly associated
beta/alpha/beta domains that tend to form a continuous
central sheet of at least eight beta-strands. The
majority of the proteins in this superfamily are
Glycosyltransferase family 2 (GT-2) proteins. But it
also includes families GT-43, GT-6, GT-8, GT13 and
GT-7; which are evolutionarily related to GT-2 and
share structure similarities.
Length = 156
Score = 25.9 bits (57), Expect = 1.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 23 VIIIFTNEAWSPLIRTILTTLMR-TPDKLLHEVLLIDDASD 62
VII NE P + L +L+ T EV+++DD S
Sbjct: 1 VIIPAYNEE--PYLERCLESLLAQTYPNF--EVIVVDDGST 37
>gnl|CDD|177773 PLN00178, PLN00178, sulfite reductase.
Length = 623
Score = 25.9 bits (57), Expect = 2.1
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 10/35 (28%)
Query: 43 LMRT-------PDKLLHEVLLIDDASDKYGVGAFR 70
++RT P++L L++DD +D++G+G R
Sbjct: 111 MLRTKQPAGKVPNRLY---LVMDDLADEFGIGTLR 142
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 25.9 bits (56), Expect = 2.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 46 TPDKLLHEVLLIDDASDKYGVG 67
+P+ LLHE DD SD + +G
Sbjct: 209 SPELLLHETKSYDDKSDMWALG 230
>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated.
Length = 442
Score = 25.5 bits (56), Expect = 2.6
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 13 KYDEDLPTVSVIIIFTNEAWSPLIR 37
+Y E LP V II E +PLIR
Sbjct: 48 RYKELLPQVKKIISL-GEGGTPLIR 71
>gnl|CDD|218721 pfam05731, TROVE, TROVE domain. This presumed domain is found in
TEP1 and Ro60 proteins, that are RNA-binding components
of Telomerase, Ro and Vault RNPs. This domain has been
named TROVE, (after Telomerase, Ro and Vault). This
domain is probably RNA-binding.
Length = 351
Score = 25.5 bits (56), Expect = 3.1
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 28 TNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQPL 73
++ P R ++R P L V D +G++ + L
Sbjct: 88 SDITTRPAARRYFPEVVRLPTDLFEFVEFYQSEGDATKLGSWGRCL 133
>gnl|CDD|188655 cd09823, peroxinectin_like, peroxinectin_like animal heme
peroxidases. Peroxinectin is an arthropod protein that
plays a role in invertebrate immunity mechanisms.
Specifically, peroxinectins are secreted as
cell-adhesive and opsonic peroxidases. The immunity
mechanism appears to involve an interaction between
peroxinectin and a transmembrane receptor of the
integrin family. Human myeloperoxidase, which is
included in this wider family, has also been reported to
interact with integrins.
Length = 378
Score = 25.2 bits (56), Expect = 3.7
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 10/56 (17%)
Query: 3 GHSLLRCHELKYDEDLPTVSVI----------IIFTNEAWSPLIRTILTTLMRTPD 48
GHSL+ + DE+ + ++ PL+R + T + D
Sbjct: 175 GHSLVPGTFERLDENYRPQGSVNLHDLFFNPDRLYEEGGLDPLLRGLATQPAQKVD 230
>gnl|CDD|197270 cd09173, PLDc_Nuc_like_unchar1_2, Putative catalytic domain, repeat
2, of uncharacterized hypothetical proteins similar to
Nuc, an endonuclease from Salmonella typhimurium.
Putative catalytic domain, repeat 2, of uncharacterized
hypothetical proteins, which show high sequence homology
to the endonuclease from Salmonella typhimurium and
vertebrate phospholipase D6. Nuc and PLD6 belong to the
phospholipase D (PLD) superfamily. They contain a short
conserved sequence motif, the HKD motif (H-x-K-x(4)-D,
where x represents any amino acid residue), which
characterizes the PLD superfamily and is essential for
catalysis. Nuc and PLD6 utilize a two-step mechanism to
cleave phosphodiester bonds: Upon substrate binding, the
bond is first attacked by a histidine residue from one
HKD motif to form a covalent phosphohistidine
intermediate, which is then hydrolyzed by water with the
aid of a second histidine residue from the other HKD
motif in the opposite subunit. However, proteins in this
subfamily have two HKD motifs in a single polypeptide
chain.
Length = 159
Score = 25.0 bits (55), Expect = 4.1
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 27 FTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDK 63
A + + L+ DKL H+ ++ID D
Sbjct: 78 PAALAPDEPEKFVGEPLLGVGDKLHHKFMVIDPFGDD 114
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter. [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 501
Score = 25.1 bits (55), Expect = 4.4
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 18 LPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLH-EVLLIDDASDKYGVGAFRQP 72
+P V+ I + TN A+ T L +P++LL + +D GV ++ P
Sbjct: 276 MPIVTFIYVLTNIAY-------FTVL--SPEELLASLAVAVDFGERLLGVMSWAMP 322
>gnl|CDD|220375 pfam09742, Dymeclin, Dyggve-Melchior-Clausen syndrome protein.
Dymeclin (Dyggve-Melchior-Clausen syndrome protein)
contains a large number of leucine and isoleucine
residues and a total of 17 repeated dileucine motifs. It
is characteristically about 700 residues long and
present in plants and animals. Mutations in the gene
coding for this protein in humans give rise to the
disorder Dyggve-Melchior-Clausen syndrome (DMC, MIM
223800) which is an autosomal-recessive disorder
characterized by the association of a
spondylo-epi-metaphyseal dysplasia and mental
retardation. DYM transcripts are widely expressed
throughout human development and Dymeclin is not an
integral membrane protein of the ER, but rather a
peripheral membrane protein dynamically associated with
the Golgi apparatus.
Length = 659
Score = 25.1 bits (55), Expect = 4.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 35 LIRTILTTLMRTPDKLLHEVLL 56
LIRTI + + DK LH L
Sbjct: 460 LIRTIQYNMKKLRDKYLHTNCL 481
>gnl|CDD|133062 cd06442, DPM1_like, DPM1_like represents putative enzymes similar
to eukaryotic DPM1. Proteins similar to eukaryotic
DPM1, including enzymes from bacteria and archaea; DPM1
is the catalytic subunit of eukaryotic
dolichol-phosphate mannose (DPM) synthase. DPM synthase
is required for synthesis of the
glycosylphosphatidylinositol (GPI) anchor, N-glycan
precursor, protein O-mannose, and C-mannose. In higher
eukaryotes,the enzyme has three subunits, DPM1, DPM2
and DPM3. DPM is synthesized from dolichol phosphate
and GDP-Man on the cytosolic surface of the ER membrane
by DPM synthase and then is flipped onto the luminal
side and used as a donor substrate. In lower
eukaryotes, such as Saccharomyces cerevisiae and
Trypanosoma brucei, DPM synthase consists of a single
component (Dpm1p and TbDpm1, respectively) that
possesses one predicted transmembrane region near the C
terminus for anchoring to the ER membrane. In contrast,
the Dpm1 homologues of higher eukaryotes, namely
fission yeast, fungi, and animals, have no
transmembrane region, suggesting the existence of
adapter molecules for membrane anchoring. This family
also includes bacteria and archaea DPM1_like enzymes.
However, the enzyme structure and mechanism of function
are not well understood. This protein family belongs to
Glycosyltransferase 2 superfamily.
Length = 224
Score = 24.8 bits (55), Expect = 4.9
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 24 IIIFT-NEAWSPLIRTILTTLMRTPDKLLHEVLLIDDAS 61
III T NE + I ++ L + +E++++DD S
Sbjct: 1 IIIPTYNEREN--IPELIERLDAALKGIDYEIIVVDDNS 37
>gnl|CDD|133058 cd06436, GlcNAc-1-P_transferase, N-acetyl-glucosamine transferase
is involved in the synthesis of
Poly-beta-1,6-N-acetyl-D-glucosamine.
N-acetyl-glucosamine transferase is responsible for the
synthesis of bacteria
Poly-beta-1,6-N-acetyl-D-glucosamine (PGA).
Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer
that serves as an adhesion for the maintenance of
biofilm structural stability in diverse eubacteria.
N-acetyl-glucosamine transferase is the product of gene
pgaC. Genetic analysis indicated that all four genes of
the pgaABCD locus were required for the PGA production,
pgaC being a glycosyltransferase.
Length = 191
Score = 24.7 bits (54), Expect = 5.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 23 VIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFR 70
V++ NE +I+ L +L+R L VL+IDDASD G R
Sbjct: 1 VLVPCLNEE--AVIQRTLASLLRNKPNFL--VLVIDDASDDDTAGIVR 44
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 25.0 bits (54), Expect = 5.7
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 27 FTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKYGVGAFRQPLN 74
F N+ W L+ + L + +L L D ++YG+ QPLN
Sbjct: 1619 FNNKGWHALV----SFLNVAHNAILRASLPKDRDPEEYGITVISQPLN 1662
>gnl|CDD|204541 pfam10703, MoaF, Molybdenum cofactor biosynthesis protein F. MoaF
protein is essential for the production of the
monoamine-inducible 30kDa protein in Klebsiella. It is
necessary for reconstituting organoautotrophic growth in
Ralstonia eutropha. It is conserved in Proteobacteria
and some lower eukaryotes. The operon regulating the Moa
genes is responsible for molybdenum cofactor
biosynthesis.
Length = 266
Score = 24.2 bits (53), Expect = 6.9
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 10/29 (34%)
Query: 8 RCHELKYDEDL----------PTVSVIII 26
RCH K EDL PT+ V++I
Sbjct: 199 RCHYYKVAEDLYLFVWREKIVPTLGVVLI 227
>gnl|CDD|217054 pfam02469, Fasciclin, Fasciclin domain. This extracellular
domain is found repeated four times in grasshopper
fasciclin I as well as in proteins from mammals, sea
urchins, plants, yeast and bacteria.
Length = 123
Score = 23.8 bits (52), Expect = 9.4
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 28 TNEAWSPLIRTILTTLMRTPDKL 50
T+EA++ L L L++ ++L
Sbjct: 32 TDEAFAKLPAGTLNFLLKDKEQL 54
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.424
Gapped
Lambda K H
0.267 0.0702 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,984,484
Number of extensions: 312445
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 21
Length of query: 76
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 30
Effective length of database: 8,897,318
Effective search space: 266919540
Effective search space used: 266919540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)