RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5328
         (76 letters)



>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
          glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
          musculus} SCOP: b.42.2.1 c.68.1.17
          Length = 472

 Score = 80.2 bits (197), Expect = 8e-20
 Identities = 25/57 (43%), Positives = 41/57 (71%)

Query: 8  RCHELKYDEDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKY 64
           C    Y ++LPT SV+I+F NEAWS L+RT+ + + R+P  ++ E++L+DDAS++ 
Sbjct: 18 GCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERD 74


>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
           protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
           UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
          Length = 501

 Score = 79.0 bits (194), Expect = 2e-19
 Identities = 23/55 (41%), Positives = 38/55 (69%)

Query: 8   RCHELKYDEDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASD 62
           +C   ++  DLP  SV+I F NEA S L+RT+++ L ++P  L+ E++L+DD S+
Sbjct: 55  QCQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSN 109


>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
           rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
           PDB: 2d7r_A*
          Length = 570

 Score = 71.4 bits (174), Expect = 1e-16
 Identities = 26/56 (46%), Positives = 39/56 (69%)

Query: 8   RCHELKYDEDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDK 63
            C+  +Y E LP  S+II F NE WS L+RT+ + L R+P +L+ E++L+DD SD+
Sbjct: 101 NCNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDR 156


>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function;
          HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB:
          3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
          Length = 329

 Score = 32.3 bits (73), Expect = 0.007
 Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 11 ELKYDEDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDAS 61
          EL+  +   T+SV++   +E     I +++ ++    D L+ E++++D  S
Sbjct: 40 ELEAAKAGRTISVVLPALDEE--DTIGSVIDSISPLVDGLVDELIVLDSGS 88


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.9 bits (61), Expect = 0.26
 Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 8/63 (12%)

Query: 9   CHELKYD-EDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLI-DDASDKYGV 66
            +++  +       S  I     +    +R +L        K     LL+  +  +    
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK------SKPYENCLLVLLNVQNAKAW 259

Query: 67  GAF 69
            AF
Sbjct: 260 NAF 262


>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic
          membrane protein, structural protein; 2.70A
          {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A*
          3l7l_A* 3l7m_A*
          Length = 729

 Score = 23.4 bits (50), Expect = 9.4
 Identities = 5/44 (11%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 19 PTVSVIIIFTN-EAWSPLIRTILTTLMRTPDKLLHEVLLIDDAS 61
            +++I+ + N E +  +   + +   +        +++++D S
Sbjct: 2  NKLTIIVTYYNAEEY--ITGCLESIKQQRTQDF--NLIIVNDGS 41


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,169,031
Number of extensions: 56003
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 7
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)