RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5328
         (76 letters)



>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
          N-acetylgalactosaminyltransferase 1, N-terminal domain
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 328

 Score = 69.6 bits (169), Expect = 1e-16
 Identities = 25/57 (43%), Positives = 41/57 (71%)

Query: 8  RCHELKYDEDLPTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASDKY 64
           C    Y ++LPT SV+I+F NEAWS L+RT+ + + R+P  ++ E++L+DDAS++ 
Sbjct: 11 GCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERD 67


>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
          {Rhodothermus marinus [TaxId: 29549]}
          Length = 381

 Score = 33.0 bits (75), Expect = 0.001
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 23 VIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASD 62
          V+  F +E    L+  +       P   +HEVL I    D
Sbjct: 3  VVFPFKHEHPEVLLHNV-RVAAAHP--RVHEVLCIGYERD 39


>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis
          protein SpsA {Bacillus subtilis [TaxId: 1423]}
          Length = 255

 Score = 30.9 bits (68), Expect = 0.009
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 19 PTVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHEVLLIDDASD 62
          P VSVI+   N++   + ++I + L +T      E+ ++DD S+
Sbjct: 1  PKVSVIMTSYNKSDY-VAKSISSILSQTFSDF--ELFIMDDNSN 41


>d1wqla2 d.129.3.3 (A:181-459) Large subunit of cumene dioxygenase
           cumA1 {Pseudomonas fluorescens [TaxId: 294]}
          Length = 279

 Score = 22.8 bits (48), Expect = 5.8
 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 20  TVSVIIIFTNEAWSPLIRTILTTLMRTPDKLLHE--VLLIDDASD 62
               + IF   ++ P I T+ T   R P+++     +++  DA +
Sbjct: 140 VAQHMTIFPTCSFLPGINTVRTWHPRGPNEIEVWSFIVVDADAPE 184


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 285,965
Number of extensions: 10527
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 4
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)