Query psy5329
Match_columns 163
No_of_seqs 125 out of 1048
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 23:49:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01383 MYSc_type_VIII Myosin 100.0 3.2E-32 6.9E-37 254.6 8.1 110 4-113 364-473 (677)
2 PTZ00014 myosin-A; Provisional 100.0 3E-32 6.5E-37 259.0 7.6 110 5-114 462-571 (821)
3 cd01381 MYSc_type_VII Myosin m 100.0 5.8E-32 1.3E-36 252.7 8.3 109 5-113 362-470 (671)
4 cd01387 MYSc_type_XV Myosin mo 100.0 7.3E-32 1.6E-36 252.2 7.9 109 5-113 361-469 (677)
5 cd01382 MYSc_type_VI Myosin mo 100.0 6.8E-32 1.5E-36 253.7 7.3 109 5-113 397-505 (717)
6 cd01384 MYSc_type_XI Myosin mo 100.0 8.2E-32 1.8E-36 251.8 7.5 109 5-113 367-475 (674)
7 cd01378 MYSc_type_I Myosin mot 100.0 1.1E-31 2.3E-36 251.0 7.5 108 4-111 365-474 (674)
8 cd01385 MYSc_type_IX Myosin mo 100.0 1.8E-31 3.9E-36 250.0 7.6 109 5-113 376-485 (692)
9 cd01377 MYSc_type_II Myosin mo 100.0 3.4E-31 7.3E-36 248.2 8.0 108 5-112 374-482 (693)
10 cd01379 MYSc_type_III Myosin m 100.0 4E-31 8.6E-36 246.5 7.6 105 5-109 373-477 (653)
11 smart00242 MYSc Myosin. Large 100.0 7.5E-31 1.6E-35 245.2 7.4 110 4-113 368-477 (677)
12 cd01380 MYSc_type_V Myosin mot 100.0 9.9E-31 2.1E-35 245.0 7.5 107 5-112 368-476 (691)
13 COG5022 Myosin heavy chain [Cy 100.0 2.3E-30 5E-35 252.6 6.7 102 6-107 429-531 (1463)
14 cd00124 MYSc Myosin motor doma 100.0 4.1E-30 8.8E-35 240.2 7.3 108 5-112 362-469 (679)
15 cd01386 MYSc_type_XVIII Myosin 100.0 4.9E-29 1.1E-33 235.8 7.5 108 5-112 373-501 (767)
16 PF00063 Myosin_head: Myosin h 100.0 6.4E-29 1.4E-33 231.3 6.0 108 4-111 363-472 (689)
17 KOG0161|consensus 99.9 2.3E-28 5E-33 245.5 5.6 109 5-114 448-558 (1930)
18 KOG0163|consensus 99.9 1.3E-26 2.8E-31 216.6 7.4 112 2-113 439-559 (1259)
19 KOG0164|consensus 99.9 2.3E-26 4.9E-31 214.0 4.8 115 4-118 374-489 (1001)
20 KOG0160|consensus 99.9 1.2E-23 2.6E-28 200.0 6.5 110 4-114 367-476 (862)
21 KOG0162|consensus 99.9 2.5E-23 5.3E-28 194.3 4.4 109 5-113 383-496 (1106)
22 KOG4229|consensus 99.9 2E-22 4.4E-27 195.2 5.8 103 7-109 429-531 (1062)
23 KOG4229|consensus 22.8 30 0.00066 35.3 0.2 91 1-92 145-252 (1062)
24 PF11214 Med2: Mediator comple 22.5 2E+02 0.0044 21.6 4.6 24 79-104 56-80 (105)
No 1
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.97 E-value=3.2e-32 Score=254.61 Aligned_cols=110 Identities=38% Similarity=0.677 Sum_probs=106.1
Q ss_pred ccccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCccccc
Q psy5329 4 NECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 83 (163)
Q Consensus 4 n~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsL 83 (163)
+.+++|.|.+|||+|..|||+|||||||||+||++|++++|..++++|..|||.|..|+|.||++||+||+++|.|||+|
T Consensus 364 ~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~l 443 (677)
T cd01383 364 GRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSL 443 (677)
T ss_pred cceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccchhhhhHHHHHHHHhchhhhhH
Q psy5329 84 LDDQAKETEKAGVLYEDNIKKEEEEKEEEE 113 (163)
Q Consensus 84 LDEEc~~Pk~TD~~fl~kl~k~~~~~~~~~ 113 (163)
|||+|++|++||.+|+.+|++++++++.+.
T Consensus 444 Ldee~~~p~~tD~~f~~kl~~~~~~~~~~~ 473 (677)
T cd01383 444 LDEESTFPNATDLTFANKLKQHLKTNSCFR 473 (677)
T ss_pred hHHHHcCCCCCHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999999888663
No 2
>PTZ00014 myosin-A; Provisional
Probab=99.97 E-value=3e-32 Score=259.03 Aligned_cols=110 Identities=25% Similarity=0.317 Sum_probs=106.1
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCcccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 84 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsLL 84 (163)
.++||.|.+|||+|..|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++|||||+++|.|||+||
T Consensus 462 ~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lL 541 (821)
T PTZ00014 462 VFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSIL 541 (821)
T ss_pred ceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhHHHHHHHHhchhhhhHH
Q psy5329 85 DDQAKETEKAGVLYEDNIKKEEEEKEEEEE 114 (163)
Q Consensus 85 DEEc~~Pk~TD~~fl~kl~k~~~~~~~~~~ 114 (163)
||+|++|++||.+|+++|+++|++++.+..
T Consensus 542 DEec~~p~~tD~~f~~kl~~~~~~~~~f~~ 571 (821)
T PTZ00014 542 EDQCLAPGGTDEKFVSSCNTNLKNNPKYKP 571 (821)
T ss_pred HHHhCCCCCCHHHHHHHHHHHhcCCCCccC
Confidence 999999999999999999999999887653
No 3
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.97 E-value=5.8e-32 Score=252.66 Aligned_cols=109 Identities=35% Similarity=0.561 Sum_probs=105.5
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCcccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 84 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsLL 84 (163)
.+++|.|.+|||+|..|||+|||||||||+||++|++++|..++++|..|||.|.+++|.||++||+||+++|.|||++|
T Consensus 362 ~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lL 441 (671)
T cd01381 362 NSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLI 441 (671)
T ss_pred ceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceec
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhHHHHHHHHhchhhhhH
Q psy5329 85 DDQAKETEKAGVLYEDNIKKEEEEKEEEE 113 (163)
Q Consensus 85 DEEc~~Pk~TD~~fl~kl~k~~~~~~~~~ 113 (163)
||+|++|++||.+|+.+++++|++++.+.
T Consensus 442 Dee~~~p~~td~~f~~kl~~~~~~~~~~~ 470 (671)
T cd01381 442 DEESKFPKGTDQTMLEKLHSQHGLHSNYL 470 (671)
T ss_pred hHhhcCCCCCHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999988764
No 4
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.97 E-value=7.3e-32 Score=252.18 Aligned_cols=109 Identities=38% Similarity=0.540 Sum_probs=104.8
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCcccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 84 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsLL 84 (163)
.+++|.|.||||+|..|||||||||||||+||++|++++|..++++|.+|||.|..++|.||++||+||+++|.|||+||
T Consensus 361 ~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lL 440 (677)
T cd01387 361 LSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRIL 440 (677)
T ss_pred ceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhHHHHHHHHhchhhhhH
Q psy5329 85 DDQAKETEKAGVLYEDNIKKEEEEKEEEE 113 (163)
Q Consensus 85 DEEc~~Pk~TD~~fl~kl~k~~~~~~~~~ 113 (163)
||+|++|++||.+|+.+++..|++++...
T Consensus 441 dee~~~p~~td~~~~~kl~~~~~~~~~~~ 469 (677)
T cd01387 441 DDQCCFPQATDHTFLQKCHYHHGANPLYS 469 (677)
T ss_pred HHHhcCCCCchHHHHHHHHHhccCCcccc
Confidence 99999999999999999999998877654
No 5
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.97 E-value=6.8e-32 Score=253.69 Aligned_cols=109 Identities=29% Similarity=0.547 Sum_probs=105.1
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCcccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 84 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsLL 84 (163)
.+++|.|.+|||+|..|||+|||||||||+||++|++++|..++++|..|||.|.+++|.||++||+||+++|.|||++|
T Consensus 397 ~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lL 476 (717)
T cd01382 397 NFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDIL 476 (717)
T ss_pred cEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhHHHHHHHHhchhhhhH
Q psy5329 85 DDQAKETEKAGVLYEDNIKKEEEEKEEEE 113 (163)
Q Consensus 85 DEEc~~Pk~TD~~fl~kl~k~~~~~~~~~ 113 (163)
||+|++|++||.+|+++|++.|++++++.
T Consensus 477 Dee~~~p~~tD~~f~~kl~~~~~~~~~~~ 505 (717)
T cd01382 477 DEENRLPQPSDQHFTSVVHQKHKDHFRLT 505 (717)
T ss_pred HHHhcCCCCCHHHHHHHHHHHhcCCcCcc
Confidence 99999999999999999999999887653
No 6
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.97 E-value=8.2e-32 Score=251.76 Aligned_cols=109 Identities=37% Similarity=0.567 Sum_probs=105.1
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCcccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 84 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsLL 84 (163)
..++|.|.+|||+|..|||+|||||||||+||++|++++|..++++|..|||.|..++|.||++||+||.++|.|||++|
T Consensus 367 ~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lL 446 (674)
T cd01384 367 SLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALL 446 (674)
T ss_pred eEEEEEecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhHHHHHHHHhchhhhhH
Q psy5329 85 DDQAKETEKAGVLYEDNIKKEEEEKEEEE 113 (163)
Q Consensus 85 DEEc~~Pk~TD~~fl~kl~k~~~~~~~~~ 113 (163)
||+|++|++||.+|+.+|+++|++++.+.
T Consensus 447 dee~~~p~~td~~f~~kl~~~~~~~~~~~ 475 (674)
T cd01384 447 DEACMFPKSTHETFAQKLYQTFKDHKRFE 475 (674)
T ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999887664
No 7
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.97 E-value=1.1e-31 Score=250.96 Aligned_cols=108 Identities=33% Similarity=0.592 Sum_probs=104.5
Q ss_pred ccccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhc-CcCcccc
Q psy5329 4 NECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLC 82 (163)
Q Consensus 4 n~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~-kP~GLLs 82 (163)
..+++|.|.+|||+|..|||+|||||||||+||++|++++|..++++|..|||.|.+++|.||++|||||++ +|.|||+
T Consensus 365 ~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~ 444 (674)
T cd01378 365 NKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFS 444 (674)
T ss_pred cceEEEEecccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHH
Confidence 356889999999999999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred cchhhhhcc-chhhhhHHHHHHHHhchhhh
Q psy5329 83 VLDDQAKET-EKAGVLYEDNIKKEEEEKEE 111 (163)
Q Consensus 83 LLDEEc~~P-k~TD~~fl~kl~k~~~~~~~ 111 (163)
+|||+|++| ++||.+|+.+|+++|+++++
T Consensus 445 lLdee~~~p~~~tD~~~~~kl~~~~~~~~~ 474 (674)
T cd01378 445 ILDDVCATPHEGTDQTFLEKLNKKFSSHPH 474 (674)
T ss_pred HHHHHHcCCCCCChHHHHHHHHHHhccCCC
Confidence 999999999 99999999999999999886
No 8
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.97 E-value=1.8e-31 Score=250.03 Aligned_cols=109 Identities=41% Similarity=0.708 Sum_probs=104.6
Q ss_pred cccCCCCCccccCCCC-CchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCccccc
Q psy5329 5 ECFTIRGEEEEEEEEE-EDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 83 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~-NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsL 83 (163)
.+++|.|.+|||+|.. |||+|||||||||+||++|++++|..++++|..|||.|..|+|.||++||+||.+||.|||++
T Consensus 376 ~~IgiLDI~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~l 455 (692)
T cd01385 376 LSIGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYL 455 (692)
T ss_pred eEEEEEecCccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHH
Confidence 3588999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccchhhhhHHHHHHHHhchhhhhH
Q psy5329 84 LDDQAKETEKAGVLYEDNIKKEEEEKEEEE 113 (163)
Q Consensus 84 LDEEc~~Pk~TD~~fl~kl~k~~~~~~~~~ 113 (163)
|||||++|++||.+|+.+++++|++++.+.
T Consensus 456 Ldee~~~p~~td~~~l~kl~~~~~~~~~~~ 485 (692)
T cd01385 456 LDEESNFPHATSQTLLAKFNQQHKDNKYYE 485 (692)
T ss_pred hHHHhcCCCCCHHHHHHHHHHHhCCCCCcc
Confidence 999999999999999999999998877653
No 9
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.97 E-value=3.4e-31 Score=248.24 Aligned_cols=108 Identities=34% Similarity=0.577 Sum_probs=104.4
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceeccc-CCcHHHHHHHhcCcCccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCV 83 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f-~DN~~cLdLIe~kP~GLLsL 83 (163)
.+++|.|.+|||+|..|||+|||||||||+||++|++++|..++++|..|||.|..++| .||++||+||+++|.|||++
T Consensus 374 ~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~l 453 (693)
T cd01377 374 YFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSL 453 (693)
T ss_pred ceEEEEecccccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhh
Confidence 46889999999999999999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred chhhhhccchhhhhHHHHHHHHhchhhhh
Q psy5329 84 LDDQAKETEKAGVLYEDNIKKEEEEKEEE 112 (163)
Q Consensus 84 LDEEc~~Pk~TD~~fl~kl~k~~~~~~~~ 112 (163)
|||+|++|++||.+|+.+|+++|++++..
T Consensus 454 Ldee~~~~~~tD~~~~~kl~~~~~~~~~~ 482 (693)
T cd01377 454 LDEECVFPKATDKTFVEKLYDNHLGKSKF 482 (693)
T ss_pred hhHHhcCCCCCHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999988876
No 10
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.97 E-value=4e-31 Score=246.46 Aligned_cols=105 Identities=37% Similarity=0.587 Sum_probs=101.6
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCcccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 84 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsLL 84 (163)
.+++|.|.+|||+|..|||+|||||||||+||++|++++|..++++|..|||.|..++|.||++|||||.++|.|||+||
T Consensus 373 ~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lL 452 (653)
T cd01379 373 LNVGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALL 452 (653)
T ss_pred ceEEEEeccccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhHHHHHHHHhchh
Q psy5329 85 DDQAKETEKAGVLYEDNIKKEEEEK 109 (163)
Q Consensus 85 DEEc~~Pk~TD~~fl~kl~k~~~~~ 109 (163)
||+|++|++||.+|+.++++.|+++
T Consensus 453 dee~~~~~~td~~~~~kl~~~~~~~ 477 (653)
T cd01379 453 DEESRFPQATDQTLVEKFEDNLKSK 477 (653)
T ss_pred HHHhcCCCCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999988654
No 11
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.96 E-value=7.5e-31 Score=245.19 Aligned_cols=110 Identities=40% Similarity=0.686 Sum_probs=105.8
Q ss_pred ccccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCccccc
Q psy5329 4 NECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 83 (163)
Q Consensus 4 n~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsL 83 (163)
+.+++|.|.+|||+|..|||+|||||||||+||++|++++|..++++|..|||.|..++|.||++||+||.++|.|||++
T Consensus 368 ~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~l 447 (677)
T smart00242 368 TYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSL 447 (677)
T ss_pred ceEEEEEecccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccchhhhhHHHHHHHHhchhhhhH
Q psy5329 84 LDDQAKETEKAGVLYEDNIKKEEEEKEEEE 113 (163)
Q Consensus 84 LDEEc~~Pk~TD~~fl~kl~k~~~~~~~~~ 113 (163)
|||+|++|++||.+|+++|+++|++++.+.
T Consensus 448 Ldee~~~~~~td~~~~~kl~~~~~~~~~~~ 477 (677)
T smart00242 448 LDEECRFPKATDQTFLEKLNQTHEKHPHFS 477 (677)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhcCCCCcc
Confidence 999999999999999999999999887664
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.96 E-value=9.9e-31 Score=245.02 Aligned_cols=107 Identities=38% Similarity=0.635 Sum_probs=101.8
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCcccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 84 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsLL 84 (163)
.+++|.|.+|||+|..|||+|||||||||+||++|++++|..++++|..|||.|.+++|.||++||+||++ |.|||++|
T Consensus 368 ~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lL 446 (691)
T cd01380 368 SFIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLL 446 (691)
T ss_pred ceEEEEecCcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHh
Confidence 46889999999999999999999999999999999999999999999999999999999999999999996 69999999
Q ss_pred hhhhhccchhhhhHHHHHHHHhc--hhhhh
Q psy5329 85 DDQAKETEKAGVLYEDNIKKEEE--EKEEE 112 (163)
Q Consensus 85 DEEc~~Pk~TD~~fl~kl~k~~~--~~~~~ 112 (163)
||+|++|++||.+|+.+|+++|+ +++.+
T Consensus 447 dee~~~p~~td~~f~~kl~~~~~~~~~~~~ 476 (691)
T cd01380 447 DEECRLPKGSDESWAQKLYNKLPKKKNPHF 476 (691)
T ss_pred HHhhcCCCCChHHHHHHHHHHhcccCCCCc
Confidence 99999999999999999999998 55544
No 13
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.96 E-value=2.3e-30 Score=252.57 Aligned_cols=102 Identities=39% Similarity=0.696 Sum_probs=98.7
Q ss_pred ccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhc-CcCcccccc
Q psy5329 6 CFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVL 84 (163)
Q Consensus 6 ~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~-kP~GLLsLL 84 (163)
.|||.|.+|||.|..|||+|||||||||+|||.|++|+|+.+|++|..|||.|.+|+|.||++|+|||++ .|.|||++|
T Consensus 429 fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslL 508 (1463)
T COG5022 429 FIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLL 508 (1463)
T ss_pred ceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhh
Confidence 5788888999999999999999999999999999999999999999999999999999999999999997 378999999
Q ss_pred hhhhhccchhhhhHHHHHHHHhc
Q psy5329 85 DDQAKETEKAGVLYEDNIKKEEE 107 (163)
Q Consensus 85 DEEc~~Pk~TD~~fl~kl~k~~~ 107 (163)
||+|.+|.|||++|..+|.++|.
T Consensus 509 DEE~~~p~atd~s~~sKL~~~l~ 531 (1463)
T COG5022 509 DEECVMPHATDESFTSKLAQRLN 531 (1463)
T ss_pred cHHhcCCCCCchHHHHHHHHHhc
Confidence 99999999999999999999998
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.96 E-value=4.1e-30 Score=240.20 Aligned_cols=108 Identities=41% Similarity=0.657 Sum_probs=104.9
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCcccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 84 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsLL 84 (163)
.+++|.|.+|||+|..|||+|||||||||+||++|++++|..++++|..|||.|..++|.||++||+||.++|.|||++|
T Consensus 362 ~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lL 441 (679)
T cd00124 362 LFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLL 441 (679)
T ss_pred ceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhHHHHHHHHhchhhhh
Q psy5329 85 DDQAKETEKAGVLYEDNIKKEEEEKEEE 112 (163)
Q Consensus 85 DEEc~~Pk~TD~~fl~kl~k~~~~~~~~ 112 (163)
||+|++|++||.+|+.+++++|++++..
T Consensus 442 dee~~~~~~~d~~~~~kl~~~~~~~~~~ 469 (679)
T cd00124 442 DEECLFPKGTDETFLEKLNNKLKSNNAF 469 (679)
T ss_pred HHHhCCCCCCHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999999998865
No 15
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.95 E-value=4.9e-29 Score=235.84 Aligned_cols=108 Identities=23% Similarity=0.377 Sum_probs=99.6
Q ss_pred cccCCCCCccccCCCC------CchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceeccc-CCcHHHHHHHhcCc
Q psy5329 5 ECFTIRGEEEEEEEEE------EDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP 77 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~------NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f-~DN~~cLdLIe~kP 77 (163)
.+++|.|.+|||+|.+ |||+|||||||||+||++|++++|..++++|..|||.|..+.+ .||++||+||+++|
T Consensus 373 ~~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p 452 (767)
T cd01386 373 ASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAP 452 (767)
T ss_pred cEEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhccc
Confidence 4678899999999974 8999999999999999999999999999999999999986555 79999999999865
Q ss_pred --------------CcccccchhhhhccchhhhhHHHHHHHHhchhhhh
Q psy5329 78 --------------NGLLCVLDDQAKETEKAGVLYEDNIKKEEEEKEEE 112 (163)
Q Consensus 78 --------------~GLLsLLDEEc~~Pk~TD~~fl~kl~k~~~~~~~~ 112 (163)
.|||++|||+|++|++||.+|+++|+++|++++..
T Consensus 453 ~~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~~ 501 (767)
T cd01386 453 QQVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAYGDRETR 501 (767)
T ss_pred ccccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHhccCCCc
Confidence 59999999999999999999999999999887654
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.95 E-value=6.4e-29 Score=231.28 Aligned_cols=108 Identities=41% Similarity=0.698 Sum_probs=96.4
Q ss_pred ccccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceeccc-CCcHHHHHHHhcCcCcccc
Q psy5329 4 NECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLC 82 (163)
Q Consensus 4 n~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f-~DN~~cLdLIe~kP~GLLs 82 (163)
..+++|.|.+|||++..|+|+|||||||||+||++|++++|..++++|..|||.|..++| .||++||+||.++|.|||+
T Consensus 363 ~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~ 442 (689)
T PF00063_consen 363 SSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILS 442 (689)
T ss_dssp SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHH
T ss_pred cccCcccCccccccccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHH
Confidence 357899999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cchhhhhccchhhhhHHHHHHHHh-chhhh
Q psy5329 83 VLDDQAKETEKAGVLYEDNIKKEE-EEKEE 111 (163)
Q Consensus 83 LLDEEc~~Pk~TD~~fl~kl~k~~-~~~~~ 111 (163)
|||++|++|++||.+|+.+|.+.| ++++.
T Consensus 443 lLdee~~~~~~sd~~fl~kl~~~~~~~~~~ 472 (689)
T PF00063_consen 443 LLDEECLLPRGSDESFLEKLLKRHSGKHPS 472 (689)
T ss_dssp HHHHHCTSTTS-HHHHHHHHHHHHTTTSTT
T ss_pred HhhhhhhcccchhhHHHHHHHhhcccCCCc
Confidence 999999999999999999999999 66554
No 17
>KOG0161|consensus
Probab=99.94 E-value=2.3e-28 Score=245.54 Aligned_cols=109 Identities=34% Similarity=0.586 Sum_probs=103.7
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceeccc-CCcHHHHHHHhcCcCccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCV 83 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f-~DN~~cLdLIe~kP~GLLsL 83 (163)
.||||.|..||++|+.|||+||||||+||+||++|++++|..++++|..|||.|.+|+| .|-+||++||.+ |+||||+
T Consensus 448 ~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~sl 526 (1930)
T KOG0161|consen 448 YFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSL 526 (1930)
T ss_pred CcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999 899999999995 7899999
Q ss_pred chhhhhccchhhhhHHHHHHHHh-chhhhhHH
Q psy5329 84 LDDQAKETEKAGVLYEDNIKKEE-EEKEEEEE 114 (163)
Q Consensus 84 LDEEc~~Pk~TD~~fl~kl~k~~-~~~~~~~~ 114 (163)
||++|++|++||.+|+.+++..| |+++-+..
T Consensus 527 LdEEc~~PkAtd~tf~~kL~~~~~gk~~~f~~ 558 (1930)
T KOG0161|consen 527 LDEECVVPKATDKTFLEKLCDQHLGKHPKFQK 558 (1930)
T ss_pred HHHHHhcCCCccchHHHHHHHHhhccCccccC
Confidence 99999999999999999999999 77776543
No 18
>KOG0163|consensus
Probab=99.93 E-value=1.3e-26 Score=216.60 Aligned_cols=112 Identities=33% Similarity=0.574 Sum_probs=107.2
Q ss_pred ccccccCCCCCc---------cccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHH
Q psy5329 2 MVNECFTIRGEE---------EEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQL 72 (163)
Q Consensus 2 ~~n~~~~i~~~~---------GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdL 72 (163)
.|||||||.-+- |||.|.+|||+|||||||||+||++|+.+|+..+|+.|..||+.++.|.|.||++||+|
T Consensus 439 ~iNqsiPFe~St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL 518 (1259)
T KOG0163|consen 439 RINQSIPFEKSTFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIEL 518 (1259)
T ss_pred HhhcccccccccceeEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHH
Confidence 379999986554 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcCcccccchhhhhccchhhhhHHHHHHHHhchhhhhH
Q psy5329 73 VEGKPNGLLCVLDDQAKETEKAGVLYEDNIKKEEEEKEEEE 113 (163)
Q Consensus 73 Ie~kP~GLLsLLDEEc~~Pk~TD~~fl~kl~k~~~~~~~~~ 113 (163)
|+.+..|||.|||+|+++|+++++.|..+.|+.+.+|=|+.
T Consensus 519 ~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~ 559 (1259)
T KOG0163|consen 519 IEAKSNGIFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLD 559 (1259)
T ss_pred HHHhccchhhhhhhhccCCCcchHHHHHHHHHhhhcceeec
Confidence 99999999999999999999999999999999999998875
No 19
>KOG0164|consensus
Probab=99.92 E-value=2.3e-26 Score=213.99 Aligned_cols=115 Identities=30% Similarity=0.538 Sum_probs=107.1
Q ss_pred ccccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCccccc
Q psy5329 4 NECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 83 (163)
Q Consensus 4 n~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsL 83 (163)
|.-+++.|.+|||+|+.|||+|||||||||+||+.|+..+++.+|++|.+|||.|.+|+|.+|.-++||++.+..|||+|
T Consensus 374 ~~Vigvldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlai 453 (1001)
T KOG0164|consen 374 NTVIGVLDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAI 453 (1001)
T ss_pred ceEEEEEEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhh
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccc-hhhhhHHHHHHHHhchhhhhHHHHhh
Q psy5329 84 LDDQAKETE-KAGVLYEDNIKKEEEEKEEEEEEEVK 118 (163)
Q Consensus 84 LDEEc~~Pk-~TD~~fl~kl~k~~~~~~~~~~~~~~ 118 (163)
||++|+.|+ .||.+||.+|.+.+++|+-......+
T Consensus 454 lDe~Cl~~G~vtD~tfL~~l~~~~~~H~Hy~sr~~~ 489 (1001)
T KOG0164|consen 454 LDEACLRPGTVTDETFLEKLNQKLKKHPHYTSRKLK 489 (1001)
T ss_pred hhHHhcCCCccchHHHHHHHHHHhhhCCcchhhhcc
Confidence 999999996 69999999999999999887655443
No 20
>KOG0160|consensus
Probab=99.89 E-value=1.2e-23 Score=200.03 Aligned_cols=110 Identities=39% Similarity=0.611 Sum_probs=104.9
Q ss_pred ccccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCccccc
Q psy5329 4 NECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 83 (163)
Q Consensus 4 n~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsL 83 (163)
+.|+++.+++|||.|.+|+|+|||||||||+||+.|++|+|..++++|..++|.|..++|.||++|+++|.. |.|+++|
T Consensus 367 ~~~igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~L 445 (862)
T KOG0160|consen 367 ERFIGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILAL 445 (862)
T ss_pred cceeeeehcccccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhc
Confidence 478999999999999999999999999999999999999999999999999999999999999999999997 8999999
Q ss_pred chhhhhccchhhhhHHHHHHHHhchhhhhHH
Q psy5329 84 LDDQAKETEKAGVLYEDNIKKEEEEKEEEEE 114 (163)
Q Consensus 84 LDEEc~~Pk~TD~~fl~kl~k~~~~~~~~~~ 114 (163)
||++|++|.+||.+|..+|...+.++.++..
T Consensus 446 lde~c~lp~~t~~~~a~KL~~~~~~~~~f~k 476 (862)
T KOG0160|consen 446 LDEECMLPKGTDETLAQKLYQTLKRNKRFTK 476 (862)
T ss_pred cchhccCCCCCcchHHHHHHHHhccCCccCC
Confidence 9999999999999999999999987766643
No 21
>KOG0162|consensus
Probab=99.87 E-value=2.5e-23 Score=194.26 Aligned_cols=109 Identities=33% Similarity=0.494 Sum_probs=102.3
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhc-CcCccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCV 83 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~-kP~GLLsL 83 (163)
--+||.|.+|||+|..|||+||||||.||+||+.|++.+++.+|++|.+|||.|.+|.|.||.-++|||+. +|+|||++
T Consensus 383 ~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ 462 (1106)
T KOG0162|consen 383 YSIGILDIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSA 462 (1106)
T ss_pred cceeeEEeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999997 58999999
Q ss_pred chhhhhcc----chhhhhHHHHHHHHhchhhhhH
Q psy5329 84 LDDQAKET----EKAGVLYEDNIKKEEEEKEEEE 113 (163)
Q Consensus 84 LDEEc~~P----k~TD~~fl~kl~k~~~~~~~~~ 113 (163)
|||.|... .|.|+.|+.+|++.|+.|+-++
T Consensus 463 ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~phF~ 496 (1106)
T KOG0162|consen 463 LDDVCATAHADSEGADQALLQRLNKLFGSHPHFE 496 (1106)
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHhcCCCccc
Confidence 99999864 5789999999999999998775
No 22
>KOG4229|consensus
Probab=99.86 E-value=2e-22 Score=195.20 Aligned_cols=103 Identities=42% Similarity=0.683 Sum_probs=100.3
Q ss_pred cCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCcccccchh
Q psy5329 7 FTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 86 (163)
Q Consensus 7 ~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsLLDE 86 (163)
++|.+.||||+|..|+|+|+||||||++||.||++|+|..++.+|..++|.|..+.|.||..|++||..+|+|||.+||+
T Consensus 429 IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDe 508 (1062)
T KOG4229|consen 429 IGILDIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDE 508 (1062)
T ss_pred eehhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhhhHHHHHHHHhchh
Q psy5329 87 QAKETEKAGVLYEDNIKKEEEEK 109 (163)
Q Consensus 87 Ec~~Pk~TD~~fl~kl~k~~~~~ 109 (163)
++.||++||.+++.+++.+|+.+
T Consensus 509 es~fP~~td~tl~~k~~~q~~~~ 531 (1062)
T KOG4229|consen 509 ESRFPKATDQTLLLKLNMQHGSN 531 (1062)
T ss_pred cCcCCchHHHHHHHHhhhhhhcc
Confidence 99999999999999999999964
No 23
>KOG4229|consensus
Probab=22.84 E-value=30 Score=35.34 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=63.5
Q ss_pred CccccccCCCCCccccCCC---------------CCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceec--cc
Q psy5329 1 MMVNECFTIRGEEEEEEEE---------------EEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHI--EF 63 (163)
Q Consensus 1 ~~~n~~~~i~~~~GFE~~~---------------~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i--~f 63 (163)
++.|||+-|.|-.|-.... .|+..+..|+.||..|..+.+..++......|-...|....- ..
T Consensus 145 ~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~~~~~~~g~ 224 (1062)
T KOG4229|consen 145 EKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIKVNFRKTGI 224 (1062)
T ss_pred hccceeEEEecccCCCCchhhHHHHHHHHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEEeccccCCC
Confidence 4789999999977555443 456667778999999999999999988888887777765322 11
Q ss_pred CCcHHHHHHHhcCcCcccccchhhhhccc
Q psy5329 64 SDNTLCLQLVEGKPNGLLCVLDDQAKETE 92 (163)
Q Consensus 64 ~DN~~cLdLIe~kP~GLLsLLDEEc~~Pk 92 (163)
....-++.++..|+. |+.-+-.++.++.
T Consensus 225 i~Gaki~~yllEKsr-~~~q~~~e~nyhi 252 (1062)
T KOG4229|consen 225 IEGAKIVEYLLEKSR-LVIQAGGERNYHI 252 (1062)
T ss_pred CCcchHHHHHHHHHH-HHHhcCCCccccc
Confidence 344556666655555 6666666666654
No 24
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=22.54 E-value=2e+02 Score=21.60 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=11.7
Q ss_pred cccccchhh-hhccchhhhhHHHHHHH
Q psy5329 79 GLLCVLDDQ-AKETEKAGVLYEDNIKK 104 (163)
Q Consensus 79 GLLsLLDEE-c~~Pk~TD~~fl~kl~k 104 (163)
..=+|||+- +.+. ....|++.+..
T Consensus 56 ~Fh~ILDd~~~~l~--~sk~~v~~m~e 80 (105)
T PF11214_consen 56 KFHSILDDTESKLN--DSKWYVDTMVE 80 (105)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 344567762 3343 33345666553
Done!