Query psy5329
Match_columns 163
No_of_seqs 125 out of 1048
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 23:50:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 3.4E-33 1.2E-37 263.2 7.3 107 6-112 447-553 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 3E-33 1E-37 260.9 6.6 109 5-113 380-488 (697)
3 4anj_A Unconventional myosin-V 100.0 2.4E-32 8.1E-37 263.7 7.1 108 6-113 451-558 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 3.3E-32 1.1E-36 256.8 7.6 108 5-113 431-539 (795)
5 4db1_A Myosin-7; S1DC, cardiac 100.0 5.2E-32 1.8E-36 255.1 6.7 108 5-113 455-564 (783)
6 1w9i_A Myosin II heavy chain; 100.0 1.1E-31 3.9E-36 252.4 7.3 108 5-112 448-558 (770)
7 2dfs_A Myosin-5A; myosin-V, in 100.0 1E-31 3.6E-36 259.8 6.7 108 5-113 431-539 (1080)
8 1i84_S Smooth muscle myosin he 100.0 1.1E-31 3.9E-36 260.4 6.4 109 5-113 458-569 (1184)
9 2ycu_A Non muscle myosin 2C, a 100.0 1.7E-31 5.8E-36 256.6 7.1 109 5-113 427-538 (995)
10 1g8x_A Myosin II heavy chain f 100.0 3.3E-31 1.1E-35 255.0 7.6 109 5-113 448-559 (1010)
11 1kk8_A Myosin heavy chain, str 100.0 2.1E-31 7.2E-36 252.4 6.1 108 5-113 454-563 (837)
12 2ca6_A RAN GTPase-activating p 67.2 0.73 2.5E-05 37.9 -1.2 11 98-108 321-331 (386)
13 2ca6_A RAN GTPase-activating p 52.3 1.7 5.9E-05 35.6 -1.5 8 151-158 379-386 (386)
14 1y4m_A HERV-FRD_6P24.1 proviru 20.9 26 0.0009 22.3 0.5 27 65-91 25-51 (53)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.97 E-value=3.4e-33 Score=263.15 Aligned_cols=107 Identities=29% Similarity=0.542 Sum_probs=103.5
Q ss_pred ccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCcccccch
Q psy5329 6 CFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 85 (163)
Q Consensus 6 ~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsLLD 85 (163)
++||.|.+|||+|+.|||||||||||||+||++|++++|..+|++|..|||.|.+|+|.||++|||||+++|+|||+|||
T Consensus 447 ~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLD 526 (784)
T 2v26_A 447 FIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILD 526 (784)
T ss_dssp EEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHH
T ss_pred eeeecccCCcccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhhhHHHHHHHHhchhhhh
Q psy5329 86 DQAKETEKAGVLYEDNIKKEEEEKEEE 112 (163)
Q Consensus 86 EEc~~Pk~TD~~fl~kl~k~~~~~~~~ 112 (163)
|||++|++||.+|+++|+++|++++++
T Consensus 527 Ee~~~p~~tD~~f~~kl~~~~~~~~~~ 553 (784)
T 2v26_A 527 EENRLPQPSDQHFTSAVHQKHKDHFRL 553 (784)
T ss_dssp HHHHSSSCCHHHHHHHHHHHTTTCTTE
T ss_pred HHhcCCCCChHHHHHHHHHHhCCCccc
Confidence 999999999999999999999987765
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.97 E-value=3e-33 Score=260.88 Aligned_cols=109 Identities=34% Similarity=0.496 Sum_probs=105.3
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCcccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 84 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsLL 84 (163)
.++||.|.+|||+|+.|||+|||||||||+||++|++++|..+|++|.+|||.|.+|+|.||++|+|||+++|+|||+||
T Consensus 380 ~~IGvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslL 459 (697)
T 1lkx_A 380 PVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLL 459 (697)
T ss_dssp CEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHH
T ss_pred eeEEeeccccccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhHHHHHHHHhchhhhhH
Q psy5329 85 DDQAKETEKAGVLYEDNIKKEEEEKEEEE 113 (163)
Q Consensus 85 DEEc~~Pk~TD~~fl~kl~k~~~~~~~~~ 113 (163)
||||++|++||.+|+++++++|++++.+.
T Consensus 460 DEec~~p~~tD~~f~~kl~~~~~~~~~f~ 488 (697)
T 1lkx_A 460 DEACLIAKSTDQTFLDSICKQFEKNPHLQ 488 (697)
T ss_dssp HHHHHSTTCCHHHHHHHHHHHSSSSTTEE
T ss_pred HHhhCCCCCChHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999988764
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.97 E-value=2.4e-32 Score=263.72 Aligned_cols=108 Identities=29% Similarity=0.538 Sum_probs=104.4
Q ss_pred ccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCcccccch
Q psy5329 6 CFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 85 (163)
Q Consensus 6 ~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsLLD 85 (163)
++||.|.+|||+|..|||||||||||||+||++|++++|..++++|..|||.|.+|+|.||++|||||+++|+|||+|||
T Consensus 451 ~IGILDI~GFE~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLD 530 (1052)
T 4anj_A 451 FIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILD 530 (1052)
T ss_dssp EEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHH
T ss_pred eEEEEecCCCcccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchhhhhHHHHHHHHhchhhhhH
Q psy5329 86 DQAKETEKAGVLYEDNIKKEEEEKEEEE 113 (163)
Q Consensus 86 EEc~~Pk~TD~~fl~kl~k~~~~~~~~~ 113 (163)
|+|++|++||.+|+++|++.|++++++.
T Consensus 531 Ee~~~p~~tD~~f~~kl~~~~~~~~~~~ 558 (1052)
T 4anj_A 531 EENRLPQPSDQHFTSAVHQKHKDHFRLS 558 (1052)
T ss_dssp HHHHSSSCCHHHHHHHHHHTTTTCTTEE
T ss_pred HHhcCCCCcHHHHHHHHHHHhccCcccc
Confidence 9999999999999999999999987653
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.97 E-value=3.3e-32 Score=256.81 Aligned_cols=108 Identities=39% Similarity=0.581 Sum_probs=103.0
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCcccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 84 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsLL 84 (163)
.++||.|.+|||+|+.|||||||||||||+||++|++++|..+|++|..|||.|.+|+|.||++|||||+++ +|||+||
T Consensus 431 ~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslL 509 (795)
T 1w7j_A 431 SFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLL 509 (795)
T ss_dssp EEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHH
T ss_pred ceEEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhh
Confidence 367889999999999999999999999999999999999999999999999999999999999999999986 9999999
Q ss_pred hhhhhccchhhhhHHHHHHHHh-chhhhhH
Q psy5329 85 DDQAKETEKAGVLYEDNIKKEE-EEKEEEE 113 (163)
Q Consensus 85 DEEc~~Pk~TD~~fl~kl~k~~-~~~~~~~ 113 (163)
||||++|++||.+|+++|+++| ++++.+.
T Consensus 510 DEec~~p~~tD~~f~~kl~~~~~~~~~~f~ 539 (795)
T 1w7j_A 510 DEECKMPKGSDDTWAQKLYNTHLNKCALFE 539 (795)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHHTTTCTTEE
T ss_pred hhhccCCCCChHHHHHHHHHHhhccCCccc
Confidence 9999999999999999999998 8877654
No 5
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.97 E-value=5.2e-32 Score=255.13 Aligned_cols=108 Identities=32% Similarity=0.619 Sum_probs=100.5
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceeccc-CCcHHHHHHHhcCcCccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCV 83 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f-~DN~~cLdLIe~kP~GLLsL 83 (163)
..++|.|.+|||+|+.|||||||||||||+||++|++++|..+|++|..|||.|.+|+| .||++|||||++ |+|||+|
T Consensus 455 ~~IGvLDI~GFE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~l 533 (783)
T 4db1_A 455 YFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSI 533 (783)
T ss_dssp EEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHH
T ss_pred ceEEEeccccccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhh
Confidence 36788999999999999999999999999999999999999999999999999999999 599999999995 8999999
Q ss_pred chhhhhccchhhhhHHHHHHHHh-chhhhhH
Q psy5329 84 LDDQAKETEKAGVLYEDNIKKEE-EEKEEEE 113 (163)
Q Consensus 84 LDEEc~~Pk~TD~~fl~kl~k~~-~~~~~~~ 113 (163)
|||||++|++||.+|+++|++.| ++++.+.
T Consensus 534 LDEec~~p~~tD~tf~~kl~~~~~~~~~~f~ 564 (783)
T 4db1_A 534 LEEECMFPKATDMTFKAKLFDNHLGKSANFQ 564 (783)
T ss_dssp HCC-TTCTTCCHHHHHHHHHHHHTTTCTTEE
T ss_pred hhHHhcCCCCCHHHHHHHHHHHhcCCCCCcc
Confidence 99999999999999999999877 7776653
No 6
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.97 E-value=1.1e-31 Score=252.44 Aligned_cols=108 Identities=34% Similarity=0.575 Sum_probs=100.8
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceeccc-CCcHHHHHHHhcC-cCcccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLC 82 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f-~DN~~cLdLIe~k-P~GLLs 82 (163)
.+++|.|.+|||+|+.|||+|||||||||+||++|++++|..+|++|..|||.|..|+| .||++|||||+++ |+|||+
T Consensus 448 ~~IGvLDI~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~Gils 527 (770)
T 1w9i_A 448 YFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILA 527 (770)
T ss_dssp EEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHH
T ss_pred CeeeeccCccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhh
Confidence 36789999999999999999999999999999999999999999999999999999999 5999999999984 999999
Q ss_pred cchhhhhccchhhhhHHHHH-HHHhchhhhh
Q psy5329 83 VLDDQAKETEKAGVLYEDNI-KKEEEEKEEE 112 (163)
Q Consensus 83 LLDEEc~~Pk~TD~~fl~kl-~k~~~~~~~~ 112 (163)
||||||++|++||.+|+++| ++++++++.+
T Consensus 528 lLDEec~~p~~tD~~f~~kL~~~~~~~~~~f 558 (770)
T 1w9i_A 528 LLDEQSVFPNATDNTLITKLHSHFSKKNAKY 558 (770)
T ss_dssp HHHHHHSSSSCCHHHHHHHHHHHHTTTSTTE
T ss_pred hhhhhhCCCCCChHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999996 5567777665
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.97 E-value=1e-31 Score=259.79 Aligned_cols=108 Identities=39% Similarity=0.581 Sum_probs=102.9
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceecccCCcHHHHHHHhcCcCcccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 84 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f~DN~~cLdLIe~kP~GLLsLL 84 (163)
.++||.|.+|||+|+.|||+|||||||||+||++|++++|..++++|..|||.|.+|+|.||++|||||+++ +|||+||
T Consensus 431 ~~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lL 509 (1080)
T 2dfs_A 431 SFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLL 509 (1080)
T ss_dssp EEEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHH
T ss_pred ceEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-Cceeeec
Confidence 368889999999999999999999999999999999999999999999999999999999999999999986 9999999
Q ss_pred hhhhhccchhhhhHHHHHHHHh-chhhhhH
Q psy5329 85 DDQAKETEKAGVLYEDNIKKEE-EEKEEEE 113 (163)
Q Consensus 85 DEEc~~Pk~TD~~fl~kl~k~~-~~~~~~~ 113 (163)
||+|++|++||.+|+++|+.+| ++++.+.
T Consensus 510 dee~~~p~~tD~~f~~kl~~~~~~~~~~f~ 539 (1080)
T 2dfs_A 510 DEECKMPKGSDDTWAQKLYNTHLNKCALFE 539 (1080)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHHBTTBSSEE
T ss_pred cccccCCCCChHHHHHHHHHHhhcCCCCcc
Confidence 9999999999999999999999 8777653
No 8
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.97 E-value=1.1e-31 Score=260.36 Aligned_cols=109 Identities=36% Similarity=0.616 Sum_probs=102.4
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceeccc-CCcHHHHHHHhcC--cCccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLL 81 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f-~DN~~cLdLIe~k--P~GLL 81 (163)
.++||.|.+|||+|..|||+|||||||||+||++|++++|..++++|..|||.|.+|+| .||++|||||++| |+|||
T Consensus 458 ~~IgvLDi~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil 537 (1184)
T 1i84_S 458 SFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVL 537 (1184)
T ss_dssp EEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHH
T ss_pred ceEEEeecCCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCch
Confidence 46788899999999999999999999999999999999999999999999999999999 5999999999963 34999
Q ss_pred ccchhhhhccchhhhhHHHHHHHHhchhhhhH
Q psy5329 82 CVLDDQAKETEKAGVLYEDNIKKEEEEKEEEE 113 (163)
Q Consensus 82 sLLDEEc~~Pk~TD~~fl~kl~k~~~~~~~~~ 113 (163)
+|||++|++|++||.+|+++|+++|++++.+.
T Consensus 538 ~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~ 569 (1184)
T 1i84_S 538 ALLDEECWFPKATDTSFVEKLIQEQGNHAKFQ 569 (1184)
T ss_dssp HHHHHTTSCTTCCHHHHHHHHHHHTSSCTTEE
T ss_pred hhhhhhhCCCCCChHHHHHHHHHHhCCCCCcc
Confidence 99999999999999999999999999887664
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.97 E-value=1.7e-31 Score=256.64 Aligned_cols=109 Identities=35% Similarity=0.605 Sum_probs=103.6
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceeccc-CCcHHHHHHHhc--CcCccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLL 81 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f-~DN~~cLdLIe~--kP~GLL 81 (163)
.++||.|.+|||+|+.|||+|||||||||+||++|++++|..++++|..|||.|.+|+| .||++||+||++ +|+|||
T Consensus 427 ~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil 506 (995)
T 2ycu_A 427 SFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLL 506 (995)
T ss_dssp EEEEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHH
T ss_pred ceEEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchh
Confidence 46888999999999999999999999999999999999999999999999999999999 699999999998 489999
Q ss_pred ccchhhhhccchhhhhHHHHHHHHhchhhhhH
Q psy5329 82 CVLDDQAKETEKAGVLYEDNIKKEEEEKEEEE 113 (163)
Q Consensus 82 sLLDEEc~~Pk~TD~~fl~kl~k~~~~~~~~~ 113 (163)
+||||+|++|++||.+|+++|+..|++++.+.
T Consensus 507 ~lLdee~~~p~~tD~~f~~kl~~~~~~~~~f~ 538 (995)
T 2ycu_A 507 ALLDEECWFPKATDKSFVEKVAQEQGGHPKFQ 538 (995)
T ss_dssp HHHHHSSSSTTCCHHHHHHHHHHHHTTSTTEE
T ss_pred hhhHHHhcCCCCchHHHHHHHHHhcCCCCCcc
Confidence 99999999999999999999999998887664
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.97 E-value=3.3e-31 Score=255.01 Aligned_cols=109 Identities=35% Similarity=0.580 Sum_probs=103.3
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceeccc-CCcHHHHHHHhc-CcCcccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLC 82 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f-~DN~~cLdLIe~-kP~GLLs 82 (163)
.++||.|.+|||+|+.|||+|||||||||+||++|++++|..++++|..|||.|.+|+| .||++||+||++ +|+|||+
T Consensus 448 ~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~ 527 (1010)
T 1g8x_A 448 YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILA 527 (1010)
T ss_dssp EEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHH
T ss_pred ceeeeccCcccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeeh
Confidence 46889999999999999999999999999999999999999999999999999999999 599999999998 4999999
Q ss_pred cchhhhhccchhhhhHHHHHHHHhc-hhhhhH
Q psy5329 83 VLDDQAKETEKAGVLYEDNIKKEEE-EKEEEE 113 (163)
Q Consensus 83 LLDEEc~~Pk~TD~~fl~kl~k~~~-~~~~~~ 113 (163)
||||+|++|++||.+|+++++++|+ +++.+.
T Consensus 528 lLdee~~~p~~td~~f~~kl~~~~~~~~~~f~ 559 (1010)
T 1g8x_A 528 LLDEQSVFPNATDNTLITKLHSHFSKKNAKYE 559 (1010)
T ss_dssp HHHHHTTSSSCCHHHHHHHHHHHHTTTCTTEE
T ss_pred hhhHHhCCCCCChHHHHHHHHHHhcCCCCCcc
Confidence 9999999999999999999999999 776553
No 11
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.97 E-value=2.1e-31 Score=252.45 Aligned_cols=108 Identities=35% Similarity=0.639 Sum_probs=100.6
Q ss_pred cccCCCCCccccCCCCCchhHHHHHhhhHHHHHHHHHhHhhhhHHHhhhcCccceeccc-CCcHHHHHHHhcCcCccccc
Q psy5329 5 ECFTIRGEEEEEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCV 83 (163)
Q Consensus 5 ~~~~i~~~~GFE~~~~NsfEQLcINyaNErLq~~f~~~iF~~e~eeY~~EGI~w~~i~f-~DN~~cLdLIe~kP~GLLsL 83 (163)
.++||.|.+|||+|+.|||||||||||||+||++|++++|..+|++|..|||.|.+|+| .||++|||||++ |+|||+|
T Consensus 454 ~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlsl 532 (837)
T 1kk8_A 454 YYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSI 532 (837)
T ss_dssp EEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHH
T ss_pred ceEEEEecCCccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999 599999999996 8999999
Q ss_pred chhhhhccchhhhhHHHHH-HHHhchhhhhH
Q psy5329 84 LDDQAKETEKAGVLYEDNI-KKEEEEKEEEE 113 (163)
Q Consensus 84 LDEEc~~Pk~TD~~fl~kl-~k~~~~~~~~~ 113 (163)
|||||++|++||.+|+++| ++++++++.+.
T Consensus 533 LDEec~~p~~tD~tf~~kl~~~~~~~~~~f~ 563 (837)
T 1kk8_A 533 LEEECMFPKADDKSFQDKLYQNHMGKNRMFT 563 (837)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHHTTTCSSEE
T ss_pred HHHHhcCCCCChHHHHHHHHHHhcCCCcCcc
Confidence 9999999999999999995 56677776553
No 12
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=67.16 E-value=0.73 Score=37.87 Aligned_cols=11 Identities=18% Similarity=0.148 Sum_probs=5.2
Q ss_pred HHHHHHHHhch
Q psy5329 98 YEDNIKKEEEE 108 (163)
Q Consensus 98 fl~kl~k~~~~ 108 (163)
++..+...+..
T Consensus 321 ~~~~l~~~l~~ 331 (386)
T 2ca6_A 321 VVDEIREVFST 331 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 34555554443
No 13
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=52.26 E-value=1.7 Score=35.59 Aligned_cols=8 Identities=13% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHhhhc
Q psy5329 151 YLVRDVHL 158 (163)
Q Consensus 151 ~~~~~~~~ 158 (163)
..+...||
T Consensus 379 ~~~~~~~~ 386 (386)
T 2ca6_A 379 DELSKAHI 386 (386)
T ss_dssp --------
T ss_pred HHHhcCcC
Confidence 34444443
No 14
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=20.89 E-value=26 Score=22.33 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=23.5
Q ss_pred CcHHHHHHHhcCcCcccccchhhhhcc
Q psy5329 65 DNTLCLQLVEGKPNGLLCVLDDQAKET 91 (163)
Q Consensus 65 DN~~cLdLIe~kP~GLLsLLDEEc~~P 91 (163)
.|...+|++..+..|+=..|.++|.|.
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC~y 51 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCCFW 51 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchhcc
Confidence 578899999988899999999999873
Done!