RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5329
(163 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 71.6 bits (175), Expect = 7e-16
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 23 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 82
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 390 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 449
Query: 83 VLDDQ 87
+LD+
Sbjct: 450 LLDEA 454
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 69.0 bits (168), Expect = 7e-15
Identities = 31/69 (44%), Positives = 43/69 (62%)
Query: 19 EEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 78
+ FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F + + KP
Sbjct: 422 DFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPM 481
Query: 79 GLLCVLDDQ 87
G+ +L+++
Sbjct: 482 GIFSILEEE 490
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 66.3 bits (161), Expect = 5e-14
Identities = 40/73 (54%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 15 EEEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVE 74
E E FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E
Sbjct: 379 FETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE 438
Query: 75 GKPNGLLCVLDDQ 87
K G+L +LD++
Sbjct: 439 AK-MGVLDLLDEE 450
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 66.3 bits (161), Expect = 5e-14
Identities = 33/69 (47%), Positives = 44/69 (63%)
Query: 19 EEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 78
+ FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F + + KP
Sbjct: 420 DFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPM 479
Query: 79 GLLCVLDDQ 87
G+L +L+++
Sbjct: 480 GILSILEEE 488
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 65.5 bits (159), Expect = 8e-14
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 16 EEEEEEDFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVE 74
E E FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E
Sbjct: 391 EIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIE 450
Query: 75 G--KPNGLLCVLDDQ 87
P G+L +LD++
Sbjct: 451 RPTNPPGVLALLDEE 465
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 59.3 bits (143), Expect = 1e-11
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 23 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGL 80
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G +P G+
Sbjct: 419 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 478
Query: 81 LCVLDDQ 87
L +LD+Q
Sbjct: 479 LALLDEQ 485
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 29.3 bits (66), Expect = 0.17
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 121 EKEEEEEKEKKEEEEKEKMEEEEKEEEETKYLVRDVHLE 159
+ ++E++K+ +E+K+ E EK EE+ K+ D E
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRRE 140
Score = 26.6 bits (59), Expect = 1.4
Identities = 10/45 (22%), Positives = 26/45 (57%)
Query: 102 IKKEEEEKEEEEEEEVKEEEKEEEEEKEKKEEEEKEKMEEEEKEE 146
+ + ++E++++ +E+K+ E+EK EE+ K + +E+
Sbjct: 97 MFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQ 141
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.5 bits (64), Expect = 0.29
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 121 EKEEEEEKEKKEEEEKEKMEEEEKEEEETKYLVRDVHLE 159
+ + E K+ +EE+ + EE EK +E + + D H E
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKE 148
Score = 25.4 bits (56), Expect = 2.8
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 102 IKKEEEEKEEEEEEEVKEEEKEEEEEKEKKEEEEKEKMEEEEKEE 146
+ + + + E ++ KEE+ + +EE EK +E + + KE
Sbjct: 105 MSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKER 149
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 357
Score = 27.7 bits (61), Expect = 0.68
Identities = 6/44 (13%), Positives = 15/44 (34%)
Query: 98 YEDNIKKEEEEKEEEEEEEVKEEEKEEEEEKEKKEEEEKEKMEE 141
+ + + E + + K+ +E K+K +E
Sbjct: 310 KNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVKRIQENKQKWKE 353
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 345
Score = 26.7 bits (58), Expect = 1.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 97 LYEDNIKKEEEEKEEEEEEEVKEEEKEEEEE 127
YE NI K + EK++ EE+ + K+E +
Sbjct: 312 TYEANIVKVDREKKKILFEELYNQRKQEVRD 342
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 25.9 bits (56), Expect = 3.0
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 97 LYEDNIKKEEEEKEEEEEEEVKEEEKEEEEEKEKKEEEEKEKMEEEEKEE 146
+ K+++EKE E E +K K+ K E ++ + + E
Sbjct: 709 ERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 24.8 bits (54), Expect = 3.0
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 124 EEEEKEKKEEEEKEKMEEEEKEEEETK 150
EE + ++E E +++ EE+ +
Sbjct: 8 NEELRAQQEAEAAQRLSEEKAQASAIS 34
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 25.7 bits (55), Expect = 3.0
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 108 EKEEEEEEEVKEEEKEEEEEKEKKEEEEKEKMEEE 142
+E K +E+ K ++EE E++++E
Sbjct: 330 VSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 25.6 bits (56), Expect = 3.8
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 28 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 66
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 25.4 bits (55), Expect = 4.0
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 95 GVLYEDNIKKEEEEKEEEEEEEVKEEEKEEEEEKEKKE 132
L +N K +++E E++ ++ +EEE + E+++
Sbjct: 213 ATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREK 250
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 109
Score = 24.4 bits (53), Expect = 4.0
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 103 KKEEEEKEEEEEEEVKEE 120
KK E E+ + + + E
Sbjct: 90 KKGEVEQPGDTQVVLLTE 107
>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 522
Score = 24.6 bits (53), Expect = 8.3
Identities = 9/52 (17%), Positives = 26/52 (50%)
Query: 100 DNIKKEEEEKEEEEEEEVKEEEKEEEEEKEKKEEEEKEKMEEEEKEEEETKY 151
D IK +++ +++ ++++ EEK +++ ++ KE +E +
Sbjct: 5 DKIKASYPLFLDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNF 56
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 24.2 bits (52), Expect = 9.4
Identities = 8/46 (17%), Positives = 20/46 (43%)
Query: 98 YEDNIKKEEEEKEEEEEEEVKEEEKEEEEEKEKKEEEEKEKMEEEE 143
+ EE+ E+ + + EE+ E ++ + ++E + E
Sbjct: 216 KATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPDPPE 261
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.302 0.127 0.343
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 643,063
Number of extensions: 34460
Number of successful extensions: 962
Number of sequences better than 10.0: 1
Number of HSP's gapped: 641
Number of HSP's successfully gapped: 294
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 49 (23.1 bits)