BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5332
(287 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242011218|ref|XP_002426352.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212510429|gb|EEB13614.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 275
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 186/222 (83%), Positives = 208/222 (93%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDWVQLEANSTVL+DEFI+ R+GLIPLTSDEVVDRI Y+RDCTC+DFC ECSVEFTLD
Sbjct: 45 MAIDWVQLEANSTVLADEFISHRVGLIPLTSDEVVDRIQYTRDCTCLDFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC DD TRHVTTADLKS+D RV+PVTSR+R+ D +EYGE D+ILIVKLRKGQEL+LRAY
Sbjct: 105 VKCTDDHTRHVTTADLKSSDPRVLPVTSRHREDDTSEYGEADEILIVKLRKGQELKLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL+PKPDEWPKSEY+ELD+TQ EAPYNWEA
Sbjct: 165 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPKPDEWPKSEYTELDDTQCEAPYNWEA 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
+PNK++FNVES GAL+PENIV+MGV VLK KLSNLQTQL+ +
Sbjct: 225 RPNKFYFNVESVGALRPENIVMMGVAVLKNKLSNLQTQLSQE 266
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/57 (78%), Positives = 51/57 (89%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALA 286
EAPYNWEA+PNK++FNVES GAL+PENIV+MGV VLK KLSNLQTQL+ EL HDAL
Sbjct: 217 EAPYNWEARPNKFYFNVESVGALRPENIVMMGVAVLKNKLSNLQTQLSQELQHDALT 273
>gi|307202125|gb|EFN81625.1| DNA-directed RNA polymerase II subunit RPB3 [Harpegnathos saltator]
Length = 276
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 184/222 (82%), Positives = 207/222 (93%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDW+QLEANSTVLSDEF+A RIG+IPL SD+VVDRI Y+RDC C+DFC ECSVEFTLD
Sbjct: 45 MAIDWIQLEANSTVLSDEFLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC +DQTRHVTTAD KS+D RV+PVTSR+R+ D +EYGETD+ILIVKLRKGQEL+LRAY
Sbjct: 105 VKCTEDQTRHVTTADFKSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDNSMRHTLFPKPDEWPKSEYSEL+E Q+EAP+NWEA
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNSMRHTLFPKPDEWPKSEYSELEEDQYEAPFNWEA 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNKY+FNVES+GALKPENIV+MG+ LK KLSNLQTQL+H+
Sbjct: 225 KPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQTQLSHE 266
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 52/57 (91%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALA 286
EAP+NWEAKPNKY+FNVES+GALKPENIV+MG+ LK KLSNLQTQL+HE+ DAL+
Sbjct: 217 EAPFNWEAKPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQTQLSHEVQSDALS 273
>gi|340719719|ref|XP_003398295.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Bombus
terrestris]
Length = 273
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 185/222 (83%), Positives = 207/222 (93%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDWVQLEANSTVLSDEF+A RIG+IPL SD+VVDRI Y+RDC C+DFC ECSVEFTLD
Sbjct: 42 MAIDWVQLEANSTVLSDEFLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLD 101
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC +DQTRHVTTAD KS+D RV+PVTSR+R+ D +EYGETD+ILIVKLRKGQEL+LRAY
Sbjct: 102 VKCTEDQTRHVTTADFKSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAY 161
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDNSMRHTLFPKPDEWPKSEYSEL+E Q+EAP+NWEA
Sbjct: 162 AKKGFGKEHAKWNPTAGVSFEYDPDNSMRHTLFPKPDEWPKSEYSELEEDQYEAPFNWEA 221
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNKY+FNVES+GALKPENIV+MG+ LK KLSNLQTQL+H+
Sbjct: 222 KPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQTQLSHE 263
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 52/57 (91%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALA 286
EAP+NWEAKPNKY+FNVES+GALKPENIV+MG+ LK KLSNLQTQL+HE+ DAL+
Sbjct: 214 EAPFNWEAKPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQTQLSHEVQSDALS 270
>gi|350400985|ref|XP_003486021.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Bombus
impatiens]
Length = 276
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 185/222 (83%), Positives = 207/222 (93%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDWVQLEANSTVLSDEF+A RIG+IPL SD+VVDRI Y+RDC C+DFC ECSVEFTLD
Sbjct: 45 MAIDWVQLEANSTVLSDEFLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC +DQTRHVTTAD KS+D RV+PVTSR+R+ D +EYGETD+ILIVKLRKGQEL+LRAY
Sbjct: 105 VKCTEDQTRHVTTADFKSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDNSMRHTLFPKPDEWPKSEYSEL+E Q+EAP+NWEA
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNSMRHTLFPKPDEWPKSEYSELEEDQYEAPFNWEA 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNKY+FNVES+GALKPENIV+MG+ LK KLSNLQTQL+H+
Sbjct: 225 KPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQTQLSHE 266
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 52/57 (91%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALA 286
EAP+NWEAKPNKY+FNVES+GALKPENIV+MG+ LK KLSNLQTQL+HE+ DAL+
Sbjct: 217 EAPFNWEAKPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQTQLSHEVQSDALS 273
>gi|383848177|ref|XP_003699728.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Megachile rotundata]
Length = 276
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 184/222 (82%), Positives = 207/222 (93%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDW+QLEANSTVLSDEF+A RIG+IPL SD+VVDRI Y+RDC C+DFC ECSVEFTLD
Sbjct: 45 MAIDWIQLEANSTVLSDEFLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC +DQTRHVTTAD KS+D RV+PVTSR+R+ D +EYGETD+ILIVKLRKGQEL+LRAY
Sbjct: 105 VKCTEDQTRHVTTADFKSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDNSMRHTLFPKPDEWPKSEYSEL+E Q+EAP+NWEA
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNSMRHTLFPKPDEWPKSEYSELEEDQYEAPFNWEA 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNKY+FNVES+GALKPENIV+MG+ LK KLSNLQTQL+H+
Sbjct: 225 KPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQTQLSHE 266
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 52/57 (91%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALA 286
EAP+NWEAKPNKY+FNVES+GALKPENIV+MG+ LK KLSNLQTQL+HE+ DAL+
Sbjct: 217 EAPFNWEAKPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQTQLSHEVQSDALS 273
>gi|66517558|ref|XP_624836.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Apis
mellifera]
gi|380029804|ref|XP_003698555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Apis
florea]
Length = 276
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 183/222 (82%), Positives = 207/222 (93%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDW+QLEANSTVLSDEF+A RIG+IPL SD+VVDRI Y+RDC C+DFC ECSVEFTLD
Sbjct: 45 MAIDWIQLEANSTVLSDEFLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC +DQTRHVTTAD KS+D RV+PVTSR+R+ D +EYGETD+ILIVKLRKGQEL+LRAY
Sbjct: 105 VKCTEDQTRHVTTADFKSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN+MRHTLFPKPDEWPKSEYSEL+E Q+EAP+NWEA
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNAMRHTLFPKPDEWPKSEYSELEEDQYEAPFNWEA 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNKY+FNVES+GALKPENIV+MG+ LK KLSNLQTQL+H+
Sbjct: 225 KPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQTQLSHE 266
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 52/57 (91%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALA 286
EAP+NWEAKPNKY+FNVES+GALKPENIV+MG+ LK KLSNLQTQL+HE+ DAL+
Sbjct: 217 EAPFNWEAKPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQTQLSHEVQSDALS 273
>gi|156551093|ref|XP_001603079.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Nasonia vitripennis]
Length = 276
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 185/222 (83%), Positives = 205/222 (92%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDWVQ+EANSTVLSDEF+A RIG+IPL SDEVVDRI Y+RDC C+DFC EC VEFTLD
Sbjct: 45 MAIDWVQIEANSTVLSDEFLAHRIGMIPLISDEVVDRIQYTRDCQCMDFCPECCVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC D+ TRHVTTADLKS++ RVVPVTS++RD D NEYGETD+ILIVKLRKGQEL+LRAY
Sbjct: 105 VKCSDETTRHVTTADLKSSEQRVVPVTSKHRDDDANEYGETDEILIVKLRKGQELKLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDNSMRHTLFPKPDEWPKSEYSEL++ Q EAP+NWEA
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNSMRHTLFPKPDEWPKSEYSELEDGQDEAPFNWEA 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNKYFFNVES+GALKPENIV+MG+ LK KLSNLQTQL+H+
Sbjct: 225 KPNKYFFNVESSGALKPENIVMMGIAALKNKLSNLQTQLSHE 266
>gi|307175611|gb|EFN65520.1| DNA-directed RNA polymerase II subunit RPB3 [Camponotus floridanus]
Length = 276
Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust.
Identities = 180/222 (81%), Positives = 208/222 (93%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDW+QLEANSTVLSDEF+A RIG+IPL SD+VVDRI ++RDC C+DFC ECSVEFTLD
Sbjct: 45 MAIDWIQLEANSTVLSDEFLAHRIGMIPLISDDVVDRIQFTRDCQCMDFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC++DQTRHVTTAD KS+D RV+PVTSR+R+ D +EYGETD+ILIVKLRKGQEL+LRAY
Sbjct: 105 VKCIEDQTRHVTTADFKSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN+MRHTL+PKPDEWPKSEY+EL+E Q+EAP+NWEA
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNAMRHTLYPKPDEWPKSEYTELEEDQYEAPFNWEA 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNKY+FNVES+GALKPENIV+MG+ LK KLSNLQTQL+H+
Sbjct: 225 KPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQTQLSHE 266
>gi|40645083|dbj|BAD06460.1| homologue of DNA-directed RNA polymerase II subunit [Antheraea
pernyi]
gi|40645085|dbj|BAD06461.1| homologue of DNA-directed RNA polymerase II subunit [Antheraea
pernyi]
Length = 275
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 183/222 (82%), Positives = 204/222 (91%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDW+QLEANSTVLSDEF+A RIGLIPL SD+VVD+I YSRDC C DFCSECSVEFTLD
Sbjct: 45 MAIDWIQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCADFCSECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC DDQTRHVTTADLKS+D RVVPVTSR+RD D +YGETD+ILI+KLRKGQEL+LRAY
Sbjct: 105 VKCTDDQTRHVTTADLKSSDPRVVPVTSRHRDEDQADYGETDEILIIKLRKGQELKLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGVCFEYDPDN M+HTL+PKPDEWPKSE++ELDE Q+EA +NWEA
Sbjct: 165 AKKGFGKEHAKWNPTAGVCFEYDPDNIMKHTLYPKPDEWPKSEHTELDEDQYEAEFNWEA 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK+FFNVES+GALKPENIV+MG+ VLK KL NLQ QLA +
Sbjct: 225 KPNKFFFNVESSGALKPENIVLMGIVVLKNKLLNLQMQLAQE 266
>gi|195579088|ref|XP_002079394.1| GD23930 [Drosophila simulans]
gi|194191403|gb|EDX04979.1| GD23930 [Drosophila simulans]
Length = 275
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 182/223 (81%), Positives = 210/223 (94%), Gaps = 1/223 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLEANSTVLSDEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLD
Sbjct: 45 LAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRA 119
VKC ++QTRHVTTADLKS++A+V+PVTSRN+ + NEYGE+ D+ILI+KLRKGQEL+LRA
Sbjct: 105 VKCSEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRA 164
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL+PKPDEWPKSE++EL++ Q+EAPYNWE
Sbjct: 165 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPKPDEWPKSEHTELEDDQYEAPYNWE 224
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
AKPNK+FFNVESAGALKPENIVIMGV VLK KLSNLQTQL+H+
Sbjct: 225 AKPNKFFFNVESAGALKPENIVIMGVQVLKNKLSNLQTQLSHE 267
>gi|195031522|ref|XP_001988351.1| GH11119 [Drosophila grimshawi]
gi|195115860|ref|XP_002002474.1| GI12561 [Drosophila mojavensis]
gi|195397712|ref|XP_002057472.1| GJ18149 [Drosophila virilis]
gi|193904351|gb|EDW03218.1| GH11119 [Drosophila grimshawi]
gi|193913049|gb|EDW11916.1| GI12561 [Drosophila mojavensis]
gi|194141126|gb|EDW57545.1| GJ18149 [Drosophila virilis]
Length = 275
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 182/223 (81%), Positives = 210/223 (94%), Gaps = 1/223 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLEANSTVLSDEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLD
Sbjct: 45 LAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE-TDDILIVKLRKGQELRLRA 119
VKC ++QTRHVTTADLKS++A+V+PVTSRN+ + NEYGE TD+ILI+KLRKGQEL+LRA
Sbjct: 105 VKCNEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEYGESTDEILIIKLRKGQELKLRA 164
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL+PKPDEWPKSE++EL++ Q+EAPYNWE
Sbjct: 165 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPKPDEWPKSEHTELEDDQYEAPYNWE 224
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
AKPNK+FFNVES+GALKPENIVIMGV VLK KLSNLQTQL+H+
Sbjct: 225 AKPNKFFFNVESSGALKPENIVIMGVQVLKNKLSNLQTQLSHE 267
>gi|17137650|ref|NP_477419.1| RNA polymerase II 33kD subunit [Drosophila melanogaster]
gi|4490379|emb|CAB38635.1| RNA polymerase II p33 subunit [Drosophila melanogaster]
gi|7298103|gb|AAF53342.1| RNA polymerase II 33kD subunit [Drosophila melanogaster]
gi|16767948|gb|AAL28192.1| GH07456p [Drosophila melanogaster]
gi|220944002|gb|ACL84544.1| RpII33-PA [synthetic construct]
gi|220953902|gb|ACL89494.1| RpII33-PA [synthetic construct]
Length = 275
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 181/223 (81%), Positives = 210/223 (94%), Gaps = 1/223 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLEANSTVLSDEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLD
Sbjct: 45 LAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRA 119
VKC ++QTRHVTTADLKS++A+V+PVTSRN+ + NEYGE+ D+ILI+KLRKGQEL+LRA
Sbjct: 105 VKCSEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRA 164
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL+PKPDEWPKSE++EL++ Q+EAPYNWE
Sbjct: 165 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPKPDEWPKSEHTELEDDQYEAPYNWE 224
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
AKPNK+FFNVESAGALKPENIV+MGV VLK KLSNLQTQL+H+
Sbjct: 225 AKPNKFFFNVESAGALKPENIVVMGVQVLKNKLSNLQTQLSHE 267
>gi|195472723|ref|XP_002088649.1| GE18688 [Drosophila yakuba]
gi|194174750|gb|EDW88361.1| GE18688 [Drosophila yakuba]
Length = 275
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 180/223 (80%), Positives = 210/223 (94%), Gaps = 1/223 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLEANSTVLSDEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLD
Sbjct: 45 LAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRA 119
VKC ++QTRHVTTADLKS++A+V+PVTSRN+ + NEYGE+ D+ILI+KLRKGQEL+LRA
Sbjct: 105 VKCSEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRA 164
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL+PKPDEWPKSE++EL++ Q+EAPYNWE
Sbjct: 165 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPKPDEWPKSEHTELEDDQYEAPYNWE 224
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
AKPNK+FFNVES+GALKPENIV+MGV VLK KLSNLQTQL+H+
Sbjct: 225 AKPNKFFFNVESSGALKPENIVVMGVQVLKNKLSNLQTQLSHE 267
>gi|195433589|ref|XP_002064793.1| GK15011 [Drosophila willistoni]
gi|194160878|gb|EDW75779.1| GK15011 [Drosophila willistoni]
Length = 275
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/223 (81%), Positives = 209/223 (93%), Gaps = 1/223 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLEANSTVLSDEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLD
Sbjct: 45 LAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRA 119
VKC ++QTRHVTTADLKS++A+V+PVTSRN+ + NEYGE+ D+ILI+KLRKGQEL+LRA
Sbjct: 105 VKCNEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRA 164
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL+PKPDEWPKSE+SEL++ Q EAPYNWE
Sbjct: 165 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPKPDEWPKSEHSELEDEQFEAPYNWE 224
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
AKPNK+FFNVES+GALKPENIV+MGV VLK KLSNLQTQL+H+
Sbjct: 225 AKPNKFFFNVESSGALKPENIVVMGVQVLKNKLSNLQTQLSHE 267
>gi|195338303|ref|XP_002035764.1| GM15286 [Drosophila sechellia]
gi|194129644|gb|EDW51687.1| GM15286 [Drosophila sechellia]
Length = 275
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/223 (81%), Positives = 210/223 (94%), Gaps = 1/223 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLEANSTVLSDEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLD
Sbjct: 45 LAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRA 119
VKC ++QTRHVTTADLKS++A+V+PVTSR++ + NEYGE+ D+ILI+KLRKGQEL+LRA
Sbjct: 105 VKCSEEQTRHVTTADLKSSNAKVLPVTSRHQGEEDNEYGESNDEILIIKLRKGQELKLRA 164
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL+PKPDEWPKSE++EL++ Q+EAPYNWE
Sbjct: 165 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPKPDEWPKSEHTELEDDQYEAPYNWE 224
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
AKPNK+FFNVESAGALKPENIVIMGV VLK KLSNLQTQL+H+
Sbjct: 225 AKPNKFFFNVESAGALKPENIVIMGVQVLKNKLSNLQTQLSHE 267
>gi|114051193|ref|NP_001040388.1| DNA-directed RNA polymerase II polypeptide [Bombyx mori]
gi|95102714|gb|ABF51298.1| DNA-directed RNA polymerase II polypeptide [Bombyx mori]
Length = 275
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/222 (81%), Positives = 203/222 (91%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDWVQLEANSTVLSDEF+A RIGLIPL SD+VVD+I YSRDC CVDFCSECSVEFTLD
Sbjct: 45 MAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC D+QTRHVTTADLKS+D RVVPVTSR+RD D +YGE D+ILI+KLRKGQEL+LRAY
Sbjct: 105 VKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDEDQADYGEADEILIIKLRKGQELKLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN MRHTL+PKPDEWPKSE++EL+E Q+EA +NWEA
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYEADFNWEA 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK+F+NVES+GALKPENIV+MG+ VLK KL NLQ QLA +
Sbjct: 225 KPNKFFYNVESSGALKPENIVLMGIVVLKNKLLNLQVQLAQE 266
>gi|357630064|gb|EHJ78455.1| DNA-directed RNA polymerase II polypeptide [Danaus plexippus]
Length = 275
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 180/222 (81%), Positives = 202/222 (90%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDWVQLEANSTVLSDEF+A RIGLIPL SD+VVD+I YSRDC C DFC+ECSVEFTLD
Sbjct: 45 MAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCADFCTECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC DQTRHVTTADLKS+D RVVPVTSR+RD D +YGE D+ILI+KLRKGQEL+LRAY
Sbjct: 105 VKCTGDQTRHVTTADLKSSDPRVVPVTSRHRDEDQADYGELDEILIIKLRKGQELKLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPT+GVCFEYDPDN MRHTL+PKPDEWPKSE++ELDE Q+EA +NWEA
Sbjct: 165 AKKGFGKEHAKWNPTSGVCFEYDPDNIMRHTLYPKPDEWPKSEHTELDEDQYEADFNWEA 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK+F+NVES+GALKPENIV+MG+ VLK KL NLQ QLA +
Sbjct: 225 KPNKFFYNVESSGALKPENIVLMGIVVLKNKLLNLQVQLAQE 266
>gi|157119713|ref|XP_001659470.1| DNA-directed RNA polymerase II subunit [Aedes aegypti]
gi|108875224|gb|EAT39449.1| AAEL008755-PA [Aedes aegypti]
Length = 275
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/224 (79%), Positives = 210/224 (93%), Gaps = 1/224 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLE+N+TVL+DEF+A R+GLIPL SDEVV+R+ YSRDCTC+DFC+ECSVEFTLD
Sbjct: 45 LAIDWVQLESNTTVLADEFLAHRVGLIPLISDEVVERMQYSRDCTCLDFCTECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE-TDDILIVKLRKGQELRLRA 119
VKC D+ TRHVTTADLKS+D RV+PVTSR+RD + NEYGE TD+ILI+KLRKGQEL+LRA
Sbjct: 105 VKCNDEHTRHVTTADLKSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLRA 164
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YAKKGFGKEHAKWNPT GVCFEYDPDNSMRHTLFPKPDEWPKSE++EL++ ++EA +NWE
Sbjct: 165 YAKKGFGKEHAKWNPTCGVCFEYDPDNSMRHTLFPKPDEWPKSEHTELEDDKYEADFNWE 224
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDR 223
AKPNK+FFNVES+GALKPENIV+MGV VLK KLSNLQTQL+H++
Sbjct: 225 AKPNKFFFNVESSGALKPENIVMMGVQVLKNKLSNLQTQLSHEQ 268
>gi|125984946|ref|XP_001356237.1| GA20659 [Drosophila pseudoobscura pseudoobscura]
gi|195164762|ref|XP_002023215.1| GL21238 [Drosophila persimilis]
gi|54644558|gb|EAL33299.1| GA20659 [Drosophila pseudoobscura pseudoobscura]
gi|194105300|gb|EDW27343.1| GL21238 [Drosophila persimilis]
Length = 275
Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust.
Identities = 178/223 (79%), Positives = 207/223 (92%), Gaps = 1/223 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLEANSTVLSDEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLD
Sbjct: 45 LAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRA 119
VKC ++QTRHVTTADLK+++ +V+PVTSRN+ + NEYGE+ D+ILI+KLRKGQEL+LRA
Sbjct: 105 VKCSEEQTRHVTTADLKTSNPKVLPVTSRNQGEEDNEYGESSDEILIIKLRKGQELKLRA 164
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YAKKGFGKEHAKWNPTAGVCFEYDPDN MRHTL+PKPDEWPKSE++EL++ Q EAPYNWE
Sbjct: 165 YAKKGFGKEHAKWNPTAGVCFEYDPDNCMRHTLYPKPDEWPKSEHTELEDDQFEAPYNWE 224
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
AKPNK+FFNVES+GALKPENIVIMGV VLK KLSNLQTQL+H+
Sbjct: 225 AKPNKFFFNVESSGALKPENIVIMGVQVLKNKLSNLQTQLSHE 267
>gi|242247264|ref|NP_001156090.1| DNA-directed RNA polymerase II polypeptide-like [Acyrthosiphon
pisum]
gi|239789163|dbj|BAH71223.1| ACYPI001769 [Acyrthosiphon pisum]
Length = 273
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 178/229 (77%), Positives = 199/229 (86%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQL+ NSTVLSDEFIASRIGLIPLTSDE+VDR+ YSRDCTC DFC +CSVEF L
Sbjct: 45 LAIDWVQLDCNSTVLSDEFIASRIGLIPLTSDEIVDRLQYSRDCTCSDFCHDCSVEFNLH 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC ++ TRHVTTADL S + RVVPVTSRN+D+D+NEYGE DDILI+KLRKGQEL++RA+
Sbjct: 105 VKCSEEMTRHVTTADLVSNNPRVVPVTSRNQDSDINEYGEKDDILIIKLRKGQELKIRAF 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPT GV FEYDPDN+MRHTLFPKPDEWPKSEYSEL+E QHE YNW A
Sbjct: 165 AKKGFGKEHAKWNPTTGVSFEYDPDNTMRHTLFPKPDEWPKSEYSELNEDQHEGLYNWRA 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVIN 229
KPNK+FFNVES G+LKPENIV+MGV LK KLSNLQTQ + IN
Sbjct: 225 KPNKFFFNVESCGSLKPENIVLMGVAALKNKLSNLQTQFTQEMDALAIN 273
>gi|332376707|gb|AEE63493.1| unknown [Dendroctonus ponderosae]
Length = 275
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 175/222 (78%), Positives = 201/222 (90%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWV+LEANSTVLSDEF+A RIGLIPL SDEVV R+ Y RDC C DFC ECSVEFTLD
Sbjct: 45 LAIDWVKLEANSTVLSDEFLAHRIGLIPLISDEVVQRLQYPRDCICTDFCQECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC DDQTRHVTTADLKS+D RV+P S++RD D N+YGETD+ILIVKLRKGQEL++RAY
Sbjct: 105 VKCTDDQTRHVTTADLKSSDPRVIPAPSKHRDDDSNDYGETDEILIVKLRKGQELKIRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPT GV FEYDPDN+MRHTLFPKPDEWPKSEY+ELD+ Q+EAP+NWE
Sbjct: 165 AKKGFGKEHAKWNPTCGVAFEYDPDNAMRHTLFPKPDEWPKSEYTELDDDQYEAPFNWEL 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK+++NVE+AG L+PENIVIMGV +LK+KLSNLQT L+H+
Sbjct: 225 KPNKFYYNVEAAGQLRPENIVIMGVGMLKEKLSNLQTLLSHE 266
>gi|91094813|ref|XP_970635.1| PREDICTED: similar to DNA-directed RNA polymerase II subunit
[Tribolium castaneum]
gi|270006567|gb|EFA03015.1| hypothetical protein TcasGA2_TC010438 [Tribolium castaneum]
Length = 274
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 176/222 (79%), Positives = 201/222 (90%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWV+LEANSTVLSDEF+A RIGLIPL SD+VV R+ Y RDC C DFC ECSVEFTLD
Sbjct: 45 LAIDWVKLEANSTVLSDEFLAHRIGLIPLISDDVVQRLQYPRDCICTDFCHECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC DD TRHVTTADLKS+D RV+P TS++RD + +EYG+TD+ILI+KLRKGQEL+++AY
Sbjct: 105 VKCTDDHTRHVTTADLKSSDPRVIPATSKHRDDESSEYGDTDEILIIKLRKGQELKVKAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN+MRHTLFPKPDEWPKSEYSELDE Q+EA +NWE
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNAMRHTLFPKPDEWPKSEYSELDEDQYEADFNWEL 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK++FNVE+AGALKPENIVIMGV +LK KLSNLQTQL H+
Sbjct: 225 KPNKFYFNVEAAGALKPENIVIMGVAMLKDKLSNLQTQLNHE 266
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 51/57 (89%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALA 286
EA +NWE KPNK++FNVE+AGALKPENIVIMGV +LK KLSNLQTQL HE+ +DALA
Sbjct: 217 EADFNWELKPNKFYFNVEAAGALKPENIVIMGVAMLKDKLSNLQTQLNHEVQNDALA 273
>gi|58391045|ref|XP_318245.2| AGAP010321-PA [Anopheles gambiae str. PEST]
gi|55236782|gb|EAA13388.2| AGAP010321-PA [Anopheles gambiae str. PEST]
Length = 273
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 175/223 (78%), Positives = 206/223 (92%), Gaps = 1/223 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLE+N+TVL+DEF+A R+GLIPL SDEVVDR+ YSRDC C+DFC+ECSVEFTLD
Sbjct: 45 LAIDWVQLESNTTVLADEFLAHRVGLIPLISDEVVDRMQYSRDCPCLDFCNECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE-TDDILIVKLRKGQELRLRA 119
VKC ++ TRHVTTADLKS+D RV+PVTSR+RD + NEYGE TD+ILI+KLRKGQEL+L+A
Sbjct: 105 VKCNEEHTRHVTTADLKSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLKA 164
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YAKKGFGKEHAKWNPT GV FEYDPDN+MRHTL+PKPDEWPKSE++ELD+ ++EA YNWE
Sbjct: 165 YAKKGFGKEHAKWNPTCGVSFEYDPDNAMRHTLYPKPDEWPKSEHTELDDDKYEADYNWE 224
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK+FFNVES+GALKPENIV+MGV VLK KLSNLQTQL+H+
Sbjct: 225 LKPNKFFFNVESSGALKPENIVLMGVQVLKNKLSNLQTQLSHE 267
>gi|312378871|gb|EFR25321.1| hypothetical protein AND_09454 [Anopheles darlingi]
Length = 273
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/223 (78%), Positives = 206/223 (92%), Gaps = 1/223 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLE+N+TVL+DEF+A R+GLIPL SDEVVDR+ YSRDC C+DFC++CSVEFTLD
Sbjct: 45 LAIDWVQLESNTTVLADEFLAHRVGLIPLISDEVVDRMQYSRDCPCLDFCNDCSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE-TDDILIVKLRKGQELRLRA 119
VKC ++ TRHVTTADLKS+D RV+PVTSR+RD + NEYGE TD+ILI+KLRKGQEL+L+A
Sbjct: 105 VKCNEEHTRHVTTADLKSSDPRVLPVTSRHRDDEDNEYGEGTDEILIIKLRKGQELKLKA 164
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YAKKGFGKEHAKWNPT GV FEYDPDN+MRHTL+PKPDEWPKSE++ELD+ ++EA YNWE
Sbjct: 165 YAKKGFGKEHAKWNPTCGVSFEYDPDNAMRHTLYPKPDEWPKSEHTELDDDKYEADYNWE 224
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK+FFNVES+GALKPENIV+MGV VLK KLSNLQTQL+H+
Sbjct: 225 LKPNKFFFNVESSGALKPENIVLMGVQVLKNKLSNLQTQLSHE 267
>gi|322793846|gb|EFZ17186.1| hypothetical protein SINV_07940 [Solenopsis invicta]
Length = 325
Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/271 (66%), Positives = 207/271 (76%), Gaps = 49/271 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDW+QLEANSTVLSDEF+A RIG+IPL SD+VVDRI Y+RDC C+DFC ECSVEFTLD
Sbjct: 45 MAIDWIQLEANSTVLSDEFLAHRIGMIPLISDDVVDRIQYTRDCQCMDFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC +DQTRHVTTAD KS+D RV+PVTSR+R+ + +EYGETD+ILIVKLRKGQEL+LRAY
Sbjct: 105 VKCTEDQTRHVTTADFKSSDPRVLPVTSRHREDEASEYGETDEILIVKLRKGQELKLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQ--------- 171
AKKGFGKEHAKWNPTAGV FEYDPDNSMRHTL+PKPDEWPKSEY+EL+E Q
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNSMRHTLYPKPDEWPKSEYTELEEDQCEYNLFYER 224
Query: 172 ----------------------------------------HEAPYNWEAKPNKYFFNVES 191
+EAP+NWEAKPNKY+FNVES
Sbjct: 225 NIVMMTSEIKFCYGILIWLKQFTSIFSIGENLIFYMHHLSYEAPFNWEAKPNKYYFNVES 284
Query: 192 AGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
+GALKPENIV+MG+ LK KLSNLQTQL+H+
Sbjct: 285 SGALKPENIVMMGIAALKNKLSNLQTQLSHE 315
>gi|427787879|gb|JAA59391.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 274
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 171/222 (77%), Positives = 202/222 (90%), Gaps = 1/222 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLEANSTVL DEFIA R+GLIPLTSDE+VD++ YSRDCTC DFC+ECSVEFTLD
Sbjct: 45 LAIDWVQLEANSTVLHDEFIAHRLGLIPLTSDEIVDKMQYSRDCTCADFCTECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC+D+QTRHVTTADLKS+D RVVPVTSR++D D NEYGET+DILIVKLRKGQE++ RAY
Sbjct: 105 VKCLDEQTRHVTTADLKSSDPRVVPVTSRHKD-DTNEYGETEDILIVKLRKGQEVKARAY 163
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPT GV FEYDPDN+ RHT +P+P+EWPKSEY+ELDE EA + E
Sbjct: 164 AKKGFGKEHAKWNPTCGVAFEYDPDNAFRHTTYPRPEEWPKSEYTELDEDHAEAEFQSEG 223
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK+++NVES+GALKPENIV+ G++VLK+KLS+LQTQL+H+
Sbjct: 224 KPNKFYYNVESSGALKPENIVLSGLSVLKKKLSDLQTQLSHE 265
>gi|427778021|gb|JAA54462.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 324
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 170/220 (77%), Positives = 200/220 (90%), Gaps = 1/220 (0%)
Query: 3 IDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVK 62
IDWVQLEANSTVL DEFIA R+GLIPLTSDE+VD++ YSRDCTC DFC+ECSVEFTLDVK
Sbjct: 97 IDWVQLEANSTVLHDEFIAHRLGLIPLTSDEIVDKMQYSRDCTCADFCTECSVEFTLDVK 156
Query: 63 CVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAK 122
C+D+QTRHVTTADLKS+D RVVPVTSR++D D NEYGET+DILIVKLRKGQE++ RAYAK
Sbjct: 157 CLDEQTRHVTTADLKSSDPRVVPVTSRHKD-DTNEYGETEDILIVKLRKGQEVKARAYAK 215
Query: 123 KGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAKP 182
KGFGKEHAKWNPT GV FEYDPDN+ RHT +P+P+EWPKSEY+ELDE EA + E KP
Sbjct: 216 KGFGKEHAKWNPTCGVAFEYDPDNAFRHTTYPRPEEWPKSEYTELDEDHAEAEFQSEGKP 275
Query: 183 NKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
NK+++NVES+GALKPENIV+ G++VLK+KLS+LQTQL+H+
Sbjct: 276 NKFYYNVESSGALKPENIVLSGLSVLKKKLSDLQTQLSHE 315
>gi|241853662|ref|XP_002415909.1| RNA polymerase II, subunit POLR2C/RPB3, putative [Ixodes
scapularis]
gi|215510123|gb|EEC19576.1| RNA polymerase II, subunit POLR2C/RPB3, putative [Ixodes
scapularis]
Length = 274
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 169/222 (76%), Positives = 201/222 (90%), Gaps = 1/222 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLEANSTVL DEFIA R+GLIPLTSDE+VD++ YSRDCTC DFC+ECSVEFT+D
Sbjct: 45 LAIDWVQLEANSTVLHDEFIAHRLGLIPLTSDEIVDKMQYSRDCTCADFCTECSVEFTID 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC+D+QTRHVTTADLKS+D RVVPVTSR++D D NEYGETDDILIVKLRKGQE++ RAY
Sbjct: 105 VKCLDEQTRHVTTADLKSSDPRVVPVTSRHKD-DTNEYGETDDILIVKLRKGQEVKARAY 163
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPT GV FEYDPDN+ RHT +P+P+EWPKSEYSE+++ + EA + E
Sbjct: 164 AKKGFGKEHAKWNPTCGVAFEYDPDNAFRHTTYPRPEEWPKSEYSEIEDDKVEADFIVEG 223
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK++FNVES+GALKPE IV+ G+ VLK+KLS+LQTQL+H+
Sbjct: 224 KPNKFYFNVESSGALKPETIVLSGLNVLKKKLSDLQTQLSHE 265
>gi|225714130|gb|ACO12911.1| DNA-directed RNA polymerase II subunit RPB3 [Lepeophtheirus
salmonis]
Length = 279
Score = 365 bits (937), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 166/223 (74%), Positives = 202/223 (90%), Gaps = 1/223 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDWVQLE+NSTVLSDEFIA R+G+IPLTSD+ VD + YSRDCTC DFC EC+VEFTLD
Sbjct: 45 MAIDWVQLESNSTVLSDEFIAHRLGMIPLTSDDAVDSMQYSRDCTCTDFCRECAVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYG-ETDDILIVKLRKGQELRLRA 119
VKC ++ TR+VT+ADLKS+D +V+PVTSRN++ D +EYG E DDILIVKLRKGQEL++RA
Sbjct: 105 VKCHEETTRNVTSADLKSSDPKVIPVTSRNQEEDGHEYGNENDDILIVKLRKGQELKVRA 164
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YAKKGF KEHAKWNPTAGV FEYDPDN++RHTL+PKP+EWPKSEY+EL+E Q +APY+++
Sbjct: 165 YAKKGFAKEHAKWNPTAGVSFEYDPDNALRHTLYPKPEEWPKSEYTELEEDQTQAPYDYK 224
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
AKPNK+FF E+AG+LKPENIV+MGV VLK+KLS+LQTQL+ +
Sbjct: 225 AKPNKFFFITEAAGSLKPENIVLMGVAVLKKKLSDLQTQLSQE 267
>gi|346471307|gb|AEO35498.1| hypothetical protein [Amblyomma maculatum]
Length = 274
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 168/222 (75%), Positives = 201/222 (90%), Gaps = 1/222 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLEANSTVL DEFIA R+GLIPLTSDE+VD++ YSRDCTC DFC+ECSVEFTLD
Sbjct: 45 LAIDWVQLEANSTVLHDEFIAHRLGLIPLTSDEIVDKMQYSRDCTCADFCTECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC+D+QTRHVTTADLKS+D RVVPVTSR++D D NEYGET+DILIVKLRKGQE++ RAY
Sbjct: 105 VKCLDEQTRHVTTADLKSSDPRVVPVTSRHKD-DTNEYGETEDILIVKLRKGQEVKARAY 163
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPT GV FEYDPDN+ RHT +P+P+EW KSEYSE+++ + EA + E
Sbjct: 164 AKKGFGKEHAKWNPTCGVAFEYDPDNAFRHTTYPRPEEWHKSEYSEIEDDRVEADFLSEG 223
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK++FNVES+GALKPE IV+ G++VLK+KLS+LQTQL+H+
Sbjct: 224 KPNKFYFNVESSGALKPETIVLTGLSVLKKKLSDLQTQLSHE 265
>gi|291242309|ref|XP_002741050.1| PREDICTED: DNA directed RNA polymerase II polypeptide C-like
[Saccoglossus kowalevskii]
Length = 275
Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 158/222 (71%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDW+Q+EANS+VL DEFI+ R+GLIPLTSDEVVDR+ YSRDCTC +FC ECSV+F LD
Sbjct: 45 IAIDWIQIEANSSVLHDEFISHRVGLIPLTSDEVVDRMQYSRDCTCDEFCPECSVDFMLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC DDQTRHVT+ DL +++ RVVPVTSR+RD + +YG+ DDILIVKLRKGQEL+L+AY
Sbjct: 105 VKCTDDQTRHVTSRDLMTSNPRVVPVTSRHRDDEAGDYGDNDDILIVKLRKGQELKLKAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
+KGF KEHAKWNPTAGV FEYDPDN+ RHT++PKP+EWPKSEYSELD+ Q++APY+
Sbjct: 165 GRKGFAKEHAKWNPTAGVSFEYDPDNTFRHTVYPKPEEWPKSEYSELDDDQYQAPYDAMG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK++ NVES GAL+PENIV+ G+ VLK+KLS+LQTQ +H+
Sbjct: 225 KPNKFYLNVESCGALRPENIVLSGLAVLKKKLSDLQTQHSHE 266
>gi|332017912|gb|EGI58566.1| DNA-directed RNA polymerase II subunit RPB3 [Acromyrmex echinatior]
Length = 256
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 165/222 (74%), Positives = 187/222 (84%), Gaps = 20/222 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDW+QLEANSTV VDRI Y+RDC C+DFC ECSVEFTLD
Sbjct: 45 MAIDWIQLEANSTV--------------------VDRIQYTRDCQCMDFCPECSVEFTLD 84
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC ++QTRHVTTAD KS+D RV+PVTSR+R+ D +EYGETD+ILIVKLRKGQEL+LRAY
Sbjct: 85 VKCTEEQTRHVTTADFKSSDPRVLPVTSRHREDDASEYGETDEILIVKLRKGQELKLRAY 144
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN+MRHTLFPK DEWPKSEYSEL+E Q+EA +NWEA
Sbjct: 145 AKKGFGKEHAKWNPTAGVSFEYDPDNTMRHTLFPKADEWPKSEYSELEEDQYEASFNWEA 204
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNKY+FNVES+GALKPENIV+MG+ LK KLSNLQTQL+H+
Sbjct: 205 KPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQTQLSHE 246
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 51/57 (89%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALA 286
EA +NWEAKPNKY+FNVES+GALKPENIV+MG+ LK KLSNLQTQL+HE+ DAL+
Sbjct: 197 EASFNWEAKPNKYYFNVESSGALKPENIVMMGIAALKNKLSNLQTQLSHEVQSDALS 253
>gi|410907303|ref|XP_003967131.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Takifugu rubripes]
Length = 275
Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 156/222 (70%), Positives = 197/222 (88%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDW+Q++ANS+VL DEF+A R+GLIPLTSD++VD++ YSRDCTC DFCSECSVE TLD
Sbjct: 45 IAIDWIQIDANSSVLHDEFVAHRVGLIPLTSDDIVDKLQYSRDCTCDDFCSECSVELTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DDIL+VKLRKGQELRLRAY
Sbjct: 105 VRCTEDQTRHVTSRDLLSNNPRVIPVTSRSRDNDPNDYVEQDDILVVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++P+P+EWPKSEYSE++E + +AP++
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNALRHTVYPRPEEWPKSEYSEIEEDEVQAPFDPHG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP K+F+NVES G+L+PENIV+ + VLK+KLS+LQTQL+H+
Sbjct: 225 KPEKFFYNVESCGSLRPENIVMSALAVLKKKLSDLQTQLSHE 266
>gi|12837765|dbj|BAB23943.1| unnamed protein product [Mus musculus]
Length = 275
Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 159/222 (71%), Positives = 196/222 (88%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+ +
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPKG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>gi|444725635|gb|ELW66196.1| DNA-directed RNA polymerase II subunit RPB3 [Tupaia chinensis]
Length = 707
Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 159/222 (71%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 477 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 536
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 537 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 596
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 597 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 656
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 657 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 698
>gi|260799989|ref|XP_002594919.1| hypothetical protein BRAFLDRAFT_277672 [Branchiostoma floridae]
gi|229280157|gb|EEN50930.1| hypothetical protein BRAFLDRAFT_277672 [Branchiostoma floridae]
Length = 275
Score = 353 bits (907), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 158/222 (71%), Positives = 194/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLEANS+VL DEFIA R+GLIPLTSD++VDR+ YSRDCTC +FC++C++E TLD
Sbjct: 45 LAIDWVQLEANSSVLHDEFIAHRVGLIPLTSDDIVDRMQYSRDCTCAEFCADCAIELTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC DDQTRHVTT DL S++ RVVPVTSR + + YGE DDILIVKLRKGQEL+LRA+
Sbjct: 105 VKCTDDQTRHVTTRDLISSNPRVVPVTSRRAEDETAGYGEADDILIVKLRKGQELKLRAF 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGF KEHAKWNPTAGV FEYDPDN++RHTL+PKP+EWPKSEY+ELD+ +A +N +
Sbjct: 165 AKKGFAKEHAKWNPTAGVAFEYDPDNALRHTLYPKPEEWPKSEYTELDDETAQAQFNPDG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNKY+ NVES GAL+PENIV+ G+++LK+KLS+LQTQ +H+
Sbjct: 225 KPNKYYINVESTGALRPENIVMTGLSILKKKLSDLQTQHSHE 266
>gi|29336059|ref|NP_033116.2| DNA-directed RNA polymerase II subunit RPB3 [Mus musculus]
gi|60223073|ref|NP_001012491.1| DNA-directed RNA polymerase II subunit RPB3 [Rattus norvegicus]
gi|354495470|ref|XP_003509853.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Cricetulus griseus]
gi|12805131|gb|AAH02023.1| Polymerase (RNA) II (DNA directed) polypeptide C [Mus musculus]
gi|59808391|gb|AAH89905.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Rattus
norvegicus]
gi|68534485|gb|AAH99548.1| Polymerase (RNA) II (DNA directed) polypeptide C [Mus musculus]
gi|74145092|dbj|BAE27415.1| unnamed protein product [Mus musculus]
gi|74191349|dbj|BAE30257.1| unnamed protein product [Mus musculus]
gi|74213568|dbj|BAE35592.1| unnamed protein product [Mus musculus]
gi|149032426|gb|EDL87317.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_b
[Rattus norvegicus]
gi|344256627|gb|EGW12731.1| DNA-directed RNA polymerase II subunit RPB3 [Cricetulus griseus]
Length = 275
Score = 353 bits (906), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 159/222 (71%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>gi|355712722|gb|AES04444.1| polymerase II polypeptide C, 33kDa [Mustela putorius furo]
Length = 273
Score = 353 bits (906), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 159/222 (71%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 44 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 103
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 104 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 163
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 164 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 223
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 224 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 265
>gi|77735375|ref|NP_001029384.1| DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
gi|73949776|ref|XP_535283.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Canis lupus familiaris]
gi|149699174|ref|XP_001494261.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like isoform
1 [Equus caballus]
gi|301752940|ref|XP_002912312.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Ailuropoda melanoleuca]
gi|348572668|ref|XP_003472114.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Cavia
porcellus]
gi|426242429|ref|XP_004015075.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Ovis aries]
gi|122146160|sp|Q3T0Q3.1|RPB3_BOVIN RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II subunit C
gi|74268238|gb|AAI02302.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Bos
taurus]
gi|152941118|gb|ABS44996.1| DNA directed RNA polymerase II polypeptide C [Bos taurus]
gi|281346645|gb|EFB22229.1| hypothetical protein PANDA_000038 [Ailuropoda melanoleuca]
gi|296477912|tpg|DAA20027.1| TPA: DNA-directed RNA polymerase II subunit RPB3 [Bos taurus]
gi|351697739|gb|EHB00658.1| DNA-directed RNA polymerase II subunit RPB3 [Heterocephalus glaber]
gi|417398216|gb|JAA46141.1| Putative rna polymerase ii subunit polr2c/rpb3 [Desmodus rotundus]
gi|440902632|gb|ELR53402.1| DNA-directed RNA polymerase II subunit RPB3 [Bos grunniens mutus]
Length = 275
Score = 353 bits (906), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 159/222 (71%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>gi|148234336|ref|NP_001084998.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
laevis]
gi|47682270|gb|AAH70601.1| MGC81245 protein [Xenopus laevis]
Length = 275
Score = 353 bits (905), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 158/222 (71%), Positives = 196/222 (88%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRVGLIPLTSDDIVDKLQYSRDCTCDEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCTEDQTRHVTSRDLVSNNLRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSE+DE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDEEEAQAPYDPTG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+LKPE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLKPETIVLSALSGLKKKLSDLQTQLSHE 266
>gi|410983639|ref|XP_003998146.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3, partial
[Felis catus]
Length = 260
Score = 352 bits (904), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 159/222 (71%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 30 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 90 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 149
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 150 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 209
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 210 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 251
>gi|45360897|ref|NP_989124.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
(Silurana) tropicalis]
gi|38511942|gb|AAH61444.1| polymerase (RNA) II (DNA directed) polypeptide C [Xenopus
(Silurana) tropicalis]
gi|89266865|emb|CAJ83921.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Xenopus
(Silurana) tropicalis]
gi|111598412|gb|AAH80362.1| polymerase (RNA) II (DNA directed) polypeptide C [Xenopus
(Silurana) tropicalis]
Length = 275
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 158/222 (71%), Positives = 196/222 (88%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRVGLIPLTSDDIVDKLQYSRDCTCDEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLVSNNLRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSE+DE + EAPY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDEEEAEAPYDPTG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>gi|432119373|gb|ELK38451.1| DNA-directed RNA polymerase II subunit RPB3 [Myotis davidii]
Length = 275
Score = 352 bits (902), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 158/222 (71%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y + DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVDQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>gi|335289326|ref|XP_003355849.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Sus
scrofa]
Length = 275
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 158/222 (71%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D ++Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPSDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>gi|344289201|ref|XP_003416333.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Loxodonta africana]
Length = 275
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 158/222 (71%), Positives = 194/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEEESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>gi|14702171|ref|NP_116558.1| DNA-directed RNA polymerase II subunit RPB3 [Homo sapiens]
gi|384475805|ref|NP_001245048.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|114662810|ref|XP_001148305.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Pan troglodytes]
gi|296231192|ref|XP_002761051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Callithrix
jacchus]
gi|297698834|ref|XP_002826511.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Pongo
abelii]
gi|397506549|ref|XP_003823789.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Pan
paniscus]
gi|402908526|ref|XP_003916990.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Papio
anubis]
gi|403306002|ref|XP_003943535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Saimiri
boliviensis boliviensis]
gi|426382315|ref|XP_004057753.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Gorilla
gorilla gorilla]
gi|3915850|sp|P19387.2|RPB3_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide; Short=RPB33; AltName:
Full=DNA-directed RNA polymerase II subunit C; AltName:
Full=RPB31
gi|2266931|gb|AAC14355.1| RNA polymerase II subunit hRPB33 [Homo sapiens]
gi|3252823|gb|AAC24309.1| RNA polymerase II subunit hRPB33 [Homo sapiens]
gi|12653281|gb|AAH00409.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|13111973|gb|AAH03159.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|20380436|gb|AAH28157.1| Polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Homo
sapiens]
gi|49457035|emb|CAG46838.1| POLR2C [Homo sapiens]
gi|60823189|gb|AAX36635.1| polymerase II polypeptide C [synthetic construct]
gi|90079489|dbj|BAE89424.1| unnamed protein product [Macaca fascicularis]
gi|119603332|gb|EAW82926.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603333|gb|EAW82927.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603335|gb|EAW82929.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|119603336|gb|EAW82930.1| hCG2025883, isoform CRA_b [Homo sapiens]
gi|123981016|gb|ABM82337.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|123995821|gb|ABM85512.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|157928942|gb|ABW03756.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic
construct]
gi|158259685|dbj|BAF85801.1| unnamed protein product [Homo sapiens]
gi|208967078|dbj|BAG73553.1| polymerase (RNA) II (DNA directed) polypeptide C [synthetic
construct]
gi|355710235|gb|EHH31699.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|355756811|gb|EHH60419.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca fascicularis]
gi|383419311|gb|AFH32869.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|384947770|gb|AFI37490.1| DNA-directed RNA polymerase II subunit RPB3 [Macaca mulatta]
gi|410206970|gb|JAA00704.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410264222|gb|JAA20077.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410307460|gb|JAA32330.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
gi|410331907|gb|JAA34900.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [Pan
troglodytes]
Length = 275
Score = 351 bits (900), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 158/222 (71%), Positives = 194/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>gi|327287828|ref|XP_003228630.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Anolis
carolinensis]
Length = 275
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 158/222 (71%), Positives = 196/222 (88%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD+VVD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDVVDKLQYSRDCTCDEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSE+DE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDEDEAQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>gi|47221930|emb|CAF98942.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 155/222 (69%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDW+Q++ANS+VL DEF+A R+GLIPLTSD++VD++ YSRDCTC DFC ECSVE TLD
Sbjct: 45 IAIDWIQIDANSSVLHDEFVAHRVGLIPLTSDDIVDKLQYSRDCTCDDFCPECSVELTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DDIL+VKLRKGQELRLRAY
Sbjct: 105 VRCTEDQTRHVTSRDLLSNNPRVIPVTSRSRDNDPNDYVEQDDILVVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN +RHT++P+P+EWPKSEYSE++E + +AP++
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNVLRHTVYPRPEEWPKSEYSEIEEDEIQAPFDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP K+F+NVES G+L+PENIV+ + VLK+KLS+LQTQL+H+
Sbjct: 225 KPEKFFYNVESCGSLRPENIVMSALAVLKKKLSDLQTQLSHE 266
>gi|326927174|ref|XP_003209769.1| PREDICTED: ubiquinone biosynthesis protein COQ9, mitochondrial-like
[Meleagris gallopavo]
Length = 549
Score = 350 bits (898), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 156/222 (70%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 319 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLD 378
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DDILIVKLRKGQEL+LRAY
Sbjct: 379 VRCNEDQTRHVTSRDLISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELKLRAY 438
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSE+DE +APY+
Sbjct: 439 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDEEDAQAPYDPNG 498
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 499 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 540
>gi|225707818|gb|ACO09755.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Osmerus mordax]
Length = 275
Score = 350 bits (897), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 155/222 (69%), Positives = 194/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDW+Q++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC DFC ECSVE TLD
Sbjct: 45 IAIDWIQIDANSSVLHDEFIAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DDI++VKLRKGQELRLRAY
Sbjct: 105 VRCTEDQTRHVTSRDLLSNNPRVIPVTSRSRDNDPNDYVEQDDIILVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT+FP+P+EWPKSEYSE++E + EAPY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNALRHTVFPRPEEWPKSEYSEIEEDEVEAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ + VLK+KLS+LQTQL H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVMSALAVLKKKLSDLQTQLGHE 266
>gi|291390190|ref|XP_002711589.1| PREDICTED: DNA directed RNA polymerase II polypeptide C
[Oryctolagus cuniculus]
Length = 275
Score = 350 bits (897), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 158/222 (71%), Positives = 194/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ SRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQNSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>gi|348503818|ref|XP_003439459.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Oreochromis niloticus]
Length = 275
Score = 348 bits (894), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 154/222 (69%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDW+Q++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC DFC ECSVE TLD
Sbjct: 45 IAIDWIQIDANSSVLHDEFIAHRVGLIPLTSDDIVDKMQYSRDCTCEDFCQECSVELTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DDIL+VKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLLSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++P+P+EWPKSEYSE++E + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNALRHTVYPRPEEWPKSEYSEIEEDEFQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ + VLK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVMSALAVLKKKLSDLQTQLSHE 266
>gi|432862447|ref|XP_004069860.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Oryzias latipes]
Length = 275
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 153/222 (68%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDW+Q++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC DFC ECSVE TLD
Sbjct: 45 IAIDWIQIDANSSVLHDEFIAHRVGLIPLTSDDIVDKMQYSRDCTCEDFCPECSVELTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DDIL+VKLRKGQELRLRAY
Sbjct: 105 VRCTEDQTRHVTSRDLLSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++P+P+EWPKSEYSE++E + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNALRHTVYPRPEEWPKSEYSEIEEDEVQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE +V+ + VLK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETVVMSALAVLKKKLSDLQTQLSHE 266
>gi|395839490|ref|XP_003792622.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Otolemur
garnettii]
Length = 275
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 157/222 (70%), Positives = 194/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLVSNHHRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>gi|449268851|gb|EMC79688.1| DNA-directed RNA polymerase II subunit RPB3, partial [Columba
livia]
Length = 248
Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 157/222 (70%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 18 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLD 77
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 78 VRCNEDQTRHVTSRDLISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAY 137
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSE+DE +APY+
Sbjct: 138 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDEEDAQAPYDPNG 197
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 198 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 239
>gi|50753469|ref|XP_414001.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 [Gallus
gallus]
Length = 275
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 156/222 (70%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DDILIVKLRKGQEL+LRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELKLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSE+DE +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDEEDAQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>gi|350539355|ref|NP_001232142.1| putative DNA directed RNA polymerase II polypeptide C [Taeniopygia
guttata]
gi|197127827|gb|ACH44325.1| putative DNA directed RNA polymerase II polypeptide C [Taeniopygia
guttata]
Length = 275
Score = 348 bits (892), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 156/222 (70%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSE+D+ +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDDEDAQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>gi|126296213|ref|XP_001365715.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Monodelphis domestica]
Length = 275
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 156/222 (70%), Positives = 194/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSR+RD D ++Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNTPRVIPVTSRSRDNDPSDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSE+DE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDEDEAQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLTHE 266
>gi|337497|gb|AAA36586.1| RNA polymerase subunit hRPB 33 [Homo sapiens]
gi|2920709|emb|CAA11842.1| RNA polymerase II subunit [Homo sapiens]
gi|2920711|emb|CAA11843.1| RNA polymerase subunit [Homo sapiens]
Length = 275
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 157/222 (70%), Positives = 193/222 (86%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++R T++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRTTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
>gi|427778091|gb|JAA54497.1| Putative rna polymerase ii subunit polr2c/rpb3 [Rhipicephalus
pulchellus]
Length = 268
Score = 347 bits (890), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 163/222 (73%), Positives = 193/222 (86%), Gaps = 7/222 (3%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLEANSTVL DEFIA R+GLIPLTSDE+VD++ YSRDCTC D TLD
Sbjct: 45 LAIDWVQLEANSTVLHDEFIAHRLGLIPLTSDEIVDKMQYSRDCTCAD------XXXTLD 98
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC+D+QTRHVTTADLKS+D RVVPVTSR++D D NEYGET+DILIVKLRKGQE++ RAY
Sbjct: 99 VKCLDEQTRHVTTADLKSSDPRVVPVTSRHKD-DTNEYGETEDILIVKLRKGQEVKARAY 157
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPT GV FEYDPDN+ RHT +P+P+EWPKSEY+ELDE EA + E
Sbjct: 158 AKKGFGKEHAKWNPTCGVAFEYDPDNAFRHTTYPRPEEWPKSEYTELDEDHAEAEFQSEG 217
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK+++NVES+GALKPENIV+ G++VLK+KLS+LQTQL+H+
Sbjct: 218 KPNKFYYNVESSGALKPENIVLSGLSVLKKKLSDLQTQLSHE 259
>gi|156371210|ref|XP_001628658.1| predicted protein [Nematostella vectensis]
gi|156215640|gb|EDO36595.1| predicted protein [Nematostella vectensis]
Length = 274
Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 156/222 (70%), Positives = 193/222 (86%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ+E N++VL DEFIA R+GL+PLTSDEVVDR+ +SRDCTC +FC +CS+EFTLD
Sbjct: 45 IAIDWVQIENNTSVLHDEFIAHRLGLVPLTSDEVVDRMTFSRDCTCDEFCDDCSIEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC DD TRHVTT DL ST+ R VPVTSRNR+ D EY E DDILIVKLRKGQEL+LRA+
Sbjct: 105 VKCTDDSTRHVTTQDLISTNPRCVPVTSRNREDDSREYMEQDDILIVKLRKGQELKLRAF 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGF KEHAKWNPTAGV FEYDPDN++RHT +P+P+EWPKSEY+EL+E Q++AP++ A
Sbjct: 165 AKKGFAKEHAKWNPTAGVAFEYDPDNALRHTTYPRPEEWPKSEYTELEEDQYQAPFDPNA 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
K +K++ NVES G+LKPENIV+ G+ +LK+KLS+LQTQ +H+
Sbjct: 225 KADKFYINVESCGSLKPENIVLSGLAILKKKLSDLQTQHSHE 266
>gi|395506007|ref|XP_003757327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 1
[Sarcophilus harrisii]
Length = 275
Score = 347 bits (889), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 156/222 (70%), Positives = 193/222 (86%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNTPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKG GKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSE+DE + +APY+
Sbjct: 165 AKKGIGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDEDEAQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLTHE 266
>gi|321475674|gb|EFX86636.1| hypothetical protein DAPPUDRAFT_313021 [Daphnia pulex]
Length = 274
Score = 346 bits (888), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 163/223 (73%), Positives = 197/223 (88%), Gaps = 3/223 (1%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ EANSTVL DEF+A R+GLIPLTSDE V+++ YSRDCTC DFC +CSVEFTLD
Sbjct: 45 LAIDWVQFEANSTVLFDEFLAHRVGLIPLTSDESVEKMQYSRDCTCPDFCVDCSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC +D TR+VTTADLKSTD RVVP TS+ RD + + + ++ILIVKLRKGQEL++RAY
Sbjct: 105 VKCSEDVTRNVTTADLKSTDPRVVPATSK-RDEEPPDDND-NEILIVKLRKGQELKMRAY 162
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDET-QHEAPYNWE 179
AKKGFGKEHAKWNPTAGV FEYDPDNS+RHTLFPKP+EWP+SEYSEL E+ QH+APY+ +
Sbjct: 163 AKKGFGKEHAKWNPTAGVAFEYDPDNSLRHTLFPKPEEWPRSEYSELGESDQHQAPYDPD 222
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK+F NVES G+L+PENIV+MG+ +LK+KLS+LQTQL+H+
Sbjct: 223 GKPNKFFVNVESCGSLRPENIVLMGIAILKKKLSDLQTQLSHE 265
>gi|345328382|ref|XP_001511558.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Ornithorhynchus anatinus]
Length = 234
Score = 345 bits (885), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 155/221 (70%), Positives = 192/221 (86%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDV 61
IDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV
Sbjct: 5 TIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDV 64
Query: 62 KCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYA 121
+C +DQTRHVT+ DL S RV+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAYA
Sbjct: 65 RCNEDQTRHVTSRDLISNSPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYA 124
Query: 122 KKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAK 181
KKGFGKEH KWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSE+DE + +APY+ K
Sbjct: 125 KKGFGKEHTKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDEDEAQAPYDPNGK 184
Query: 182 PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
P ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 185 PERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 225
>gi|218931178|ref|NP_001135345.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|209734758|gb|ACI68248.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|223647266|gb|ACN10391.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
gi|223673145|gb|ACN12754.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
Length = 275
Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 151/222 (68%), Positives = 194/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDW+Q++ANS+V+ DEFIA R+GLIPLTSD+VVD++ YSRDCTC DFC ECSVE TLD
Sbjct: 45 IAIDWIQIDANSSVIHDEFIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPECSVELTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTS++RD D N+Y E DDIL+VKLRKGQELRLRAY
Sbjct: 105 VRCTEDQTRHVTSRDLLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++P+P+EWPKSEYSE++E + +AP++
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNALRHTVYPRPEEWPKSEYSEIEEDEVQAPFDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVE+ G+L+PE IV+ + VLK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVETCGSLRPETIVMSALAVLKKKLSDLQTQLSHE 266
>gi|225716034|gb|ACO13863.1| DNA-directed RNA polymerase II subunit RPB3 [Esox lucius]
Length = 275
Score = 343 bits (880), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 151/222 (68%), Positives = 194/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDW+Q++ANS+V+ DEFIA R+GLIPLTSD+VVD++ YSRDCTC DFC ECSVE TLD
Sbjct: 45 IAIDWIQIDANSSVIHDEFIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPECSVELTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTS++RD D N+Y E DDIL+VKLRKGQELRLRAY
Sbjct: 105 VRCTEDQTRHVTSRDLLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++P+P+EWPKSEYSE++E + +AP++
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNALRHTVYPRPEEWPKSEYSEIEEDEVQAPFDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVE+ G+L+PE IV+ + VLK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVETCGSLRPETIVMSALAVLKKKLSDLQTQLSHE 266
>gi|209730678|gb|ACI66208.1| DNA-directed RNA polymerase II subunit RPB3 [Salmo salar]
Length = 275
Score = 342 bits (877), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 150/222 (67%), Positives = 193/222 (86%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDW+Q++ANS+V+ DEFIA R+GLIPLTSD+VVD++ YSRDCTC DFC ECSVE TLD
Sbjct: 45 IAIDWIQIDANSSVIHDEFIAHRVGLIPLTSDDVVDKMQYSRDCTCDDFCPECSVELTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C +DQTRHVT+ DL S RV+PVTS++RD D N+Y E DDIL+VKLRKGQELRLRAY
Sbjct: 105 ARCTEDQTRHVTSRDLLSNHPRVIPVTSKSRDNDPNDYVEQDDILLVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++P+P+EWPKSEYSE++E + +AP++
Sbjct: 165 AKKGFGKEHAKWNPTAGVSFEYDPDNALRHTVYPRPEEWPKSEYSEIEEDEVQAPFDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVE+ G+L+PE IV+ + VLK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVETCGSLRPETIVMSALAVLKKKLSDLQTQLSHE 266
>gi|269784633|ref|NP_001161428.1| DNA-directed RNA polymerase II subunit RPB3 [Danio rerio]
gi|28278474|gb|AAH46047.1| Polymerase (RNA) II (DNA directed) polypeptide C [Danio rerio]
Length = 275
Score = 340 bits (872), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 152/222 (68%), Positives = 191/222 (86%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEF+A R+GLIPLTSD++VD++ YSRDCTC DFC ECSVE TLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFVAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DDIL+VKLRKGQELRLRAY
Sbjct: 105 VRCTEDQTRHVTSRDLLSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++P P EWPKSEYSE++E +A Y+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPIPQEWPKSEYSEIEEDGVQAQYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ + +LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVMSALAMLKKKLSDLQTQLSHE 266
>gi|221114057|ref|XP_002158521.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like [Hydra
magnipapillata]
Length = 273
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 156/222 (70%), Positives = 190/222 (85%), Gaps = 1/222 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ+E N++VL DEFIA RIGLIPLTSDE VD++ YSRDCTC +FC ECSV+FTLD
Sbjct: 45 IAIDWVQIENNTSVLHDEFIAHRIGLIPLTSDEKVDKMCYSRDCTCSEFCDECSVKFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC + TRHVT+ DL S D +V+PVTSR +D D YGETD+I+IVKLRKGQEL+L A+
Sbjct: 105 VKCTGETTRHVTSRDLISEDPKVIPVTSRIKDDDTG-YGETDEIVIVKLRKGQELKLHAF 163
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT F +PD+WPKSEYS+LDE Q+EAPY+ A
Sbjct: 164 AKKGFGKEHAKWNPTAGVSFEYDPDNALRHTTFARPDQWPKSEYSQLDEDQYEAPYDIHA 223
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
K +K++FNVES G+LKPENIV+ G++VLK+KLS LQT +H+
Sbjct: 224 KADKFYFNVESCGSLKPENIVMTGISVLKKKLSELQTHHSHE 265
>gi|221043080|dbj|BAH13217.1| unnamed protein product [Homo sapiens]
Length = 424
Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 151/218 (69%), Positives = 187/218 (85%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEY ELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYLELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
KP ++++NVES G+L+PE IV+ ++ LK+KL+N + +
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLTNKEAE 262
>gi|2829844|sp|P97760.1|RPB3_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide; Short=RPB33; AltName:
Full=DNA-directed RNA polymerase II subunit C; AltName:
Full=RPB31
gi|1850789|dbj|BAA12205.1| the third largest RNA polymerase II subunit [Mus musculus]
Length = 275
Score = 337 bits (863), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 153/222 (68%), Positives = 188/222 (84%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ NS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDGNSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
KK GKEHAKWNPTAGV FEYDPDN +RHT++PKP+E PKSEYSELDE + +APY+
Sbjct: 165 VKKRSGKEHAKWNPTAGVAFEYDPDNGLRHTVYPKPEEGPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE I + ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIGLSALSGLKKKLSDLQTQLSHE 266
>gi|387018210|gb|AFJ51223.1| DNA-directed RNA polymerase II subunit RPB3-like [Crotalus
adamanteus]
Length = 275
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 151/221 (68%), Positives = 190/221 (85%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD VVD++ YSRDC C +FC +CSVEF+LD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDGVVDKLQYSRDCNCDEFCPDCSVEFSLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S +++V+PVTSR RD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNNSQVIPVTSRRRDNDPNDYVEPDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
A KGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSE+DE + +A Y+
Sbjct: 165 ATKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDEDEAQAAYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSQ 265
>gi|390368205|ref|XP_781436.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like isoform
1, partial [Strongylocentrotus purpuratus]
Length = 388
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 150/222 (67%), Positives = 192/222 (86%), Gaps = 2/222 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWV+++ANS+VL DEFI+ R+GLIPLTSDEVVD++ ++RDC C +FCS+CSVE +LD
Sbjct: 158 IAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVVDKLNFNRDCGCEEFCSDCSVELSLD 217
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC DDQTRHVT+ DL S++ +VVPV SRN+++ ++YGE DDILIVKLRKGQELRLRAY
Sbjct: 218 VKCTDDQTRHVTSRDLLSSNQKVVPVPSRNQES--SDYGEVDDILIVKLRKGQELRLRAY 275
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGK+HAKW PTA + FEYDPDN MRHT++PKP+EWPKSE++E+DE + ++ +A
Sbjct: 276 AKKGFGKDHAKWVPTAAIAFEYDPDNIMRHTVYPKPEEWPKSEFTEVDEDTAQGKFDGDA 335
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
PNK+FFNVES GAL PENIV G++VLK+KLS+LQTQ +H+
Sbjct: 336 VPNKFFFNVESIGALTPENIVFSGLSVLKKKLSDLQTQHSHE 377
>gi|390367669|ref|XP_003731306.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like,
partial [Strongylocentrotus purpuratus]
Length = 262
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 150/222 (67%), Positives = 192/222 (86%), Gaps = 2/222 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWV+++ANS+VL DEFI+ R+GLIPLTSDEVVD++ ++RDC C +FCS+CSVE +LD
Sbjct: 32 IAIDWVEIQANSSVLHDEFISHRVGLIPLTSDEVVDKLNFNRDCGCEEFCSDCSVELSLD 91
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC DDQTRHVT+ DL S++ +VVPV SRN+++ ++YGE DDILIVKLRKGQELRLRAY
Sbjct: 92 VKCTDDQTRHVTSRDLLSSNQKVVPVPSRNQES--SDYGEVDDILIVKLRKGQELRLRAY 149
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGK+HAKW PTA + FEYDPDN MRHT++PKP+EWPKSE++E+DE + ++ +A
Sbjct: 150 AKKGFGKDHAKWVPTAAIAFEYDPDNIMRHTVYPKPEEWPKSEFTEVDEDTAQGKFDGDA 209
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
PNK+FFNVES GAL PENIV G++VLK+KLS+LQTQ +H+
Sbjct: 210 VPNKFFFNVESIGALTPENIVFSGLSVLKKKLSDLQTQHSHE 251
>gi|340372125|ref|XP_003384595.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Amphimedon queenslandica]
Length = 274
Score = 330 bits (847), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 147/219 (67%), Positives = 188/219 (85%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDW+ L ANSTVL DEFIA RIGL+PLTSD VD++ YSR+CTC DFC C++E+TLD
Sbjct: 45 LAIDWIHLIANSTVLHDEFIAHRIGLVPLTSDGTVDKMQYSRECTCNDFCPMCAIEYTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC D+ TR VTT DL S++ V+PVTS R++D ++YG TDDILIVKLRKGQEL+L+AY
Sbjct: 105 VKCNDESTRAVTTRDLLSSNQSVIPVTSMVRESDTSDYGLTDDILIVKLRKGQELKLKAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
A KGFGKEHAKW+P AG+ FEYDPDN++RHT +PKP+EWPKSEYSE+DE+Q EAP+++++
Sbjct: 165 ATKGFGKEHAKWSPAAGISFEYDPDNALRHTTYPKPEEWPKSEYSEIDESQPEAPFDFKS 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
KP+K+FFNVES+G+L+ E I++ G+ VLKQKLS+LQ QL
Sbjct: 225 KPSKFFFNVESSGSLRAETIIMSGLNVLKQKLSDLQIQL 263
>gi|391329125|ref|XP_003739027.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like
[Metaseiulus occidentalis]
Length = 277
Score = 330 bits (846), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 156/224 (69%), Positives = 186/224 (83%), Gaps = 3/224 (1%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDWVQLEANS+VL DEFIA R+GLIPLTS+E+V+ + Y+RDC+CVDFC++CSVEF LD
Sbjct: 45 MAIDWVQLEANSSVLHDEFIAHRLGLIPLTSEEIVEHMQYNRDCSCVDFCTDCSVEFILD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC DD TRHVTTADLKS D R VPVTS+ RD D EYG+ +DILIVKLRKGQE++ Y
Sbjct: 105 VKCTDDATRHVTTADLKSADIRCVPVTSKRRD-DTAEYGQEEDILIVKLRKGQEVKAICY 163
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDE--TQHEAPYNW 178
A+KGFGKEHAKWNPT GV FEYDPDN RHT +P P+EWP+SEYSE+ E T+ +A Y+
Sbjct: 164 ARKGFGKEHAKWNPTCGVAFEYDPDNKFRHTTYPIPEEWPRSEYSEIAEEDTRSQAEYDP 223
Query: 179 EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
E KP+K+FFNVES+GALKPE IV+ GV LK+KLS+L TQL +
Sbjct: 224 EGKPSKFFFNVESSGALKPETIVMSGVKQLKKKLSDLLTQLVQE 267
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 41/51 (80%)
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHE 279
++A Y+ E KP+K+FFNVES+GALKPE IV+ GV LK+KLS+L TQL E
Sbjct: 217 SQAEYDPEGKPSKFFFNVESSGALKPETIVMSGVKQLKKKLSDLLTQLVQE 267
>gi|198422271|ref|XP_002119444.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 2 [Ciona intestinalis]
gi|198422273|ref|XP_002119542.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 3 [Ciona intestinalis]
gi|198422275|ref|XP_002119306.1| PREDICTED: similar to polymerase (RNA) II (DNA directed)
polypeptide C isoform 1 [Ciona intestinalis]
Length = 277
Score = 314 bits (805), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 144/224 (64%), Positives = 181/224 (80%), Gaps = 2/224 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDW+Q+E NS+VL+DEF++ RIGLIPLTSD+VVD+I YSRDC C DFC +CSVEF LD
Sbjct: 45 LAIDWIQIEENSSVLNDEFLSHRIGLIPLTSDDVVDKIQYSRDCMCDDFCQDCSVEFYLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC + TR VTT DL S + +VVP+TSR+R +GE DDILI KLRKGQ L+ +A+
Sbjct: 105 VKCTGEGTRQVTTRDLISMNPKVVPITSRSRGDSSKSFGEQDDILIAKLRKGQSLKFKAF 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSEL--DETQHEAPYNW 178
AKKGFGKEHAKW + V FEYDPDN++RHT +PKP+EWPKSEYSEL DE +++A ++
Sbjct: 165 AKKGFGKEHAKWQCVSAVAFEYDPDNALRHTTYPKPEEWPKSEYSELADDEDKYQADFDP 224
Query: 179 EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK+FFNVES GAL+PENIV+ G+ VLK+KLS+LQTQ + +
Sbjct: 225 HGKPNKFFFNVESTGALRPENIVLNGLAVLKKKLSDLQTQHSQE 268
>gi|196004242|ref|XP_002111988.1| hypothetical protein TRIADDRAFT_24132 [Trichoplax adhaerens]
gi|190585887|gb|EDV25955.1| hypothetical protein TRIADDRAFT_24132 [Trichoplax adhaerens]
Length = 274
Score = 313 bits (803), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 143/229 (62%), Positives = 181/229 (79%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ N++VLSDEFIA R+GLIPLT DEV+DR+ YSRDC CV+ C ECSVEFTLD
Sbjct: 45 LAIDWVQFVNNTSVLSDEFIAHRLGLIPLTCDEVIDRLQYSRDCNCVEHCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C DDQTRHVTT DL S+D+RVVPVT+R + D + DDILI KLR+GQE++++AY
Sbjct: 105 VRCNDDQTRHVTTRDLISSDSRVVPVTTRYGEDDTVYGDQEDDILIAKLRRGQEIKIKAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKG G EHAKWNPTA V FEYDPDN+MRHT +PKP+EWPKSEYS L E +EA Y+ +
Sbjct: 165 AKKGLGTEHAKWNPTASVAFEYDPDNAMRHTTYPKPEEWPKSEYSNLPEDNYEASYDPQT 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVIN 229
+K++ NVE++G+L+PENIV+ G++ LK KLS LQ +H++ +N
Sbjct: 225 VADKFYLNVETSGSLRPENIVLSGISTLKNKLSELQLHFSHEQSQGALN 273
>gi|395506009|ref|XP_003757328.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3 isoform 2
[Sarcophilus harrisii]
Length = 252
Score = 312 bits (800), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 140/199 (70%), Positives = 172/199 (86%)
Query: 24 IGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARV 83
IGLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLDV+C +DQTRHVT+ DL S RV
Sbjct: 45 IGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRDLISNTPRV 104
Query: 84 VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYD 143
+PVTSR+RD D N+Y E DDILIVKLRKGQELRLRAYAKKG GKEHAKWNPTAGV FEYD
Sbjct: 105 IPVTSRSRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGIGKEHAKWNPTAGVAFEYD 164
Query: 144 PDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIM 203
PDN++RHT++PKP+EWPKSEYSE+DE + +APY+ KP ++++NVES G+L+PE IV+
Sbjct: 165 PDNALRHTVYPKPEEWPKSEYSEIDEDEAQAPYDPNGKPERFYYNVESCGSLRPETIVLS 224
Query: 204 GVTVLKQKLSNLQTQLAHD 222
++ LK+KLS+LQTQL H+
Sbjct: 225 ALSGLKKKLSDLQTQLTHE 243
>gi|443691223|gb|ELT93136.1| hypothetical protein CAPTEDRAFT_155833 [Capitella teleta]
Length = 270
Score = 312 bits (800), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 141/222 (63%), Positives = 183/222 (82%), Gaps = 5/222 (2%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ+ AN+TVL DEF+A R+GLIPL SD+V+D++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQINANTTVLCDEFLAQRVGLIPLASDDVIDKMQYSRDCTCEEFCQECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC DDQTR VT+ADL S ++ VVPVTS+ +D+ + G ILIVKLRKGQ+L+L+AY
Sbjct: 105 VKCSDDQTRSVTSADLISNNSEVVPVTSK-QDSTQEQKG----ILIVKLRKGQDLKLKAY 159
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
A+KGF KEHAKWNPT GV FEYDPDN +RHT +P+P+EWP+SE+SEL + +++ Y+
Sbjct: 160 ARKGFAKEHAKWNPTCGVAFEYDPDNILRHTTYPRPEEWPRSEFSELSDDEYQGTYDPNG 219
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK+FFNVE+ G+L PE I+ G++V+K+KLS+LQTQLA +
Sbjct: 220 KPNKFFFNVEAVGSLMPEKIITSGLSVMKKKLSDLQTQLAQE 261
>gi|427778887|gb|JAA54895.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 250
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 149/222 (67%), Positives = 177/222 (79%), Gaps = 25/222 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLEANSTVL DEFIA R+GLIPLTSDE+VD++ YSRDCTC DF
Sbjct: 45 LAIDWVQLEANSTVLHDEFIAHRLGLIPLTSDEIVDKMQYSRDCTCADF----------- 93
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
DLKS+D RVVPVTSR++D D NEYGET+DILIVKLRKGQE++ RAY
Sbjct: 94 -------------XDLKSSDPRVVPVTSRHKD-DTNEYGETEDILIVKLRKGQEVKARAY 139
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPT GV FEYDPDN+ RHT +P+P+EWPKSEY+ELDE EA + E
Sbjct: 140 AKKGFGKEHAKWNPTCGVAFEYDPDNAFRHTTYPRPEEWPKSEYTELDEDHAEAEFQSEG 199
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK+++NVES+GALKPENIV+ G++VLK+KLS+LQTQL+H+
Sbjct: 200 KPNKFYYNVESSGALKPENIVLSGLSVLKKKLSDLQTQLSHE 241
>gi|324521335|gb|ADY47834.1| DNA-directed RNA polymerase II subunit RPB3 [Ascaris suum]
Length = 275
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 143/222 (64%), Positives = 179/222 (80%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDWVQ+EAN++VL DEFIA R+GLIPLTS+ VVD+ YSRDC C DFC EC+VE L
Sbjct: 45 MAIDWVQIEANTSVLHDEFIAHRMGLIPLTSNNVVDKFQYSRDCQCNDFCPECAVEMRLS 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ D+ TR VTTADL+S++A VVP R+ E G ++DILIVKLR+GQE+R++ Y
Sbjct: 105 VRWDDEGTRSVTTADLESSNAAVVPACGRHLQGRNAEDGTSEDILIVKLRRGQEIRMKCY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPT GV FEYDPDN++RHT+ KP+EWPKSEYS+L+E ++EAPY+ A
Sbjct: 165 AKKGFGKEHAKWNPTCGVAFEYDPDNALRHTVLAKPEEWPKSEYSQLEEDEYEAPYDPMA 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPNK++F VES+GALK ENIV+ G+ VLK+KL +LQ QL +
Sbjct: 225 KPNKFWFTVESSGALKAENIVLSGINVLKKKLGDLQNQLQRE 266
>gi|441597761|ref|XP_004093284.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB3 [Nomascus leucogenys]
Length = 258
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 145/222 (65%), Positives = 176/222 (79%), Gaps = 18/222 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 46 LAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLD 105
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 106 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 165
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDP EYSELDE + +APY+
Sbjct: 166 AKKGFGKEHAKWNPTAGVAFEYDP------------------EYSELDEDESQAPYDPNG 207
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 208 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 249
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 45/58 (77%)
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALA 286
++APY+ KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+HE+ D L
Sbjct: 199 SQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVLT 256
>gi|149032425|gb|EDL87316.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_a
[Rattus norvegicus]
Length = 241
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 141/195 (72%), Positives = 165/195 (84%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGAL 195
KP N+ S L
Sbjct: 225 KPESSSSNLGSRREL 239
>gi|74202237|dbj|BAE23500.1| unnamed protein product [Mus musculus]
Length = 332
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/202 (69%), Positives = 165/202 (81%), Gaps = 7/202 (3%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTA V EYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAXVALEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVI 202
KP E G L P + +
Sbjct: 225 KP-------ERLGDLGPRPLTL 239
>gi|358341556|dbj|GAA27309.2| DNA-directed RNA polymerase II subunit RPB3 [Clonorchis sinensis]
Length = 266
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 139/222 (62%), Positives = 170/222 (76%), Gaps = 2/222 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ+E N+T+L+DEFIA R+GLIPLTSD VVD++ Y R+C C +FC +CSVE TLD
Sbjct: 45 LAIDWVQIEENNTMLNDEFIAQRVGLIPLTSDSVVDKMAYFRECPCREFCEQCSVELTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V C D RHVT ADL S++ V PV SR D D Y + ILIVK+RKGQ L+LRA
Sbjct: 105 VCCTTDAPRHVTGADLLSSNRDVQPVPSR--DPDDAAYVGQESILIVKMRKGQRLKLRAI 162
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT KP+EWP+SEYS L E +H+APY+
Sbjct: 163 AKKGFGKEHAKWNPTAGVGFEYDPDNALRHTFLQKPEEWPRSEYSTLPEDEHQAPYDPHG 222
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPN++FFNVES G+L+P+NIV G+ VLK+KL NL L +
Sbjct: 223 KPNRFFFNVESCGSLQPKNIVFSGLDVLKKKLQNLLDNLTQE 264
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 38/51 (74%)
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHE 279
++APY+ KPN++FFNVES G+L+P+NIV G+ VLK+KL NL L E
Sbjct: 214 HQAPYDPHGKPNRFFFNVESCGSLQPKNIVFSGLDVLKKKLQNLLDNLTQE 264
>gi|256089309|ref|XP_002580754.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
gi|350646602|emb|CCD58722.1| DNA-directed rna polymerase II subunit,putative [Schistosoma
mansoni]
Length = 266
Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 135/222 (60%), Positives = 170/222 (76%), Gaps = 2/222 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ+E N+T+L+DEFIA R+GLIPLT D VVD++ Y R+C C +FC +CSVE TLD
Sbjct: 45 LAIDWVQIEDNNTMLNDEFIAQRVGLIPLTCDNVVDKMTYFRECPCREFCEQCSVELTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V C D RHVT ADL S++ V PV SR DAD + Y + ILIVK+RKGQ L+LRA
Sbjct: 105 VCCTTDAPRHVTGADLISSNRDVQPVPSR--DADESSYVGQESILIVKMRKGQRLKLRAI 162
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT KP+EWP+SEYS L E +H+APY+
Sbjct: 163 AKKGFGKEHAKWNPTAGVGFEYDPDNALRHTFLHKPEEWPRSEYSTLPENEHQAPYDPTG 222
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPN+++FN+E+ G+L+P I+ G+TVLK+KL NL L +
Sbjct: 223 KPNRFYFNIETCGSLQPRAIIFSGLTVLKRKLQNLLDNLTQE 264
>gi|170581298|ref|XP_001895623.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Brugia malayi]
gi|158597360|gb|EDP35528.1| DNA-directed RNA polymerase II 33 kDa polypeptide, putative [Brugia
malayi]
Length = 275
Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 136/222 (61%), Positives = 178/222 (80%), Gaps = 6/222 (2%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDWVQ+E+NS+VL DEFIA R+GLIPLTSD VVD++ +SRDC C +FC C+VE L
Sbjct: 45 MAIDWVQIESNSSVLHDEFIAHRLGLIPLTSDSVVDQMQFSRDCQCTEFCQFCAVEMRLR 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVP---VTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
V+C D+ R VTTADL++++ V P V RNR+A+ N +DDILIVKLRKGQ++ +
Sbjct: 105 VRCDDEGIRAVTTADLETSNPDVAPACGVHIRNRNAEENA---SDDILIVKLRKGQDIDI 161
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYN 177
+ AKKGFGKEHAKWNPT V FEYDPDN++RHT+ KP+EWPKSEYS+L++ ++EAP++
Sbjct: 162 KCIAKKGFGKEHAKWNPTCCVAFEYDPDNALRHTMLAKPEEWPKSEYSQLEDDEYEAPFD 221
Query: 178 WEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
AKPNK++F VES GALK ENI++ G++VLK+KL++LQ QL
Sbjct: 222 PMAKPNKFWFTVESTGALKAENIILSGISVLKKKLADLQNQL 263
>gi|226490156|emb|CAX69320.1| DNA-directed RNA polymerase II subunit C [Schistosoma japonicum]
Length = 266
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 134/222 (60%), Positives = 169/222 (76%), Gaps = 2/222 (0%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ+E N+T+L+DEFIA R+GLIPLT D VVD++ Y R+C C +FC +CSVE TLD
Sbjct: 45 LAIDWVQIEENNTMLNDEFIAQRVGLIPLTCDNVVDKMTYFRECPCREFCEQCSVELTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V C D RHVT ADL S++ V PV SR DAD + Y + ILIVK+RKGQ L+LRA
Sbjct: 105 VCCTTDAPRHVTGADLISSNRDVQPVPSR--DADESSYVGQESILIVKMRKGQRLKLRAI 162
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT KP+EWP+SEYS L E +H+APY+
Sbjct: 163 AKKGFGKEHAKWNPTAGVGFEYDPDNALRHTFLHKPEEWPRSEYSTLPENEHQAPYDPTG 222
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KPN++ FN+E+ G+L+P+ I+ +TVLK+KL NL L +
Sbjct: 223 KPNRFSFNIETCGSLQPKAIIFSSLTVLKRKLQNLLDNLTQE 264
>gi|402590881|gb|EJW84811.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wuchereria bancrofti]
Length = 275
Score = 286 bits (732), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 134/222 (60%), Positives = 178/222 (80%), Gaps = 6/222 (2%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA+DWVQ+E+NS+VL DEFIA R+GLIPLTSD VVD++ +SRDC C +FC C+VE L
Sbjct: 45 MAVDWVQIESNSSVLHDEFIAHRLGLIPLTSDSVVDQMQFSRDCQCTEFCQFCAVEMRLR 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVP---VTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
V+C D+ R VTTADL++++ V P V RNR+A+ N +DDILIVKLRKGQ++ +
Sbjct: 105 VRCDDEGIRAVTTADLETSNPDVAPACGVHIRNRNAEENA---SDDILIVKLRKGQDIDI 161
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYN 177
+ AKKGFGKEHAKWNPT V FEYDPDN++RHT+ KP+EWPKSEYS+L++ ++EAP++
Sbjct: 162 KCIAKKGFGKEHAKWNPTCCVAFEYDPDNALRHTVLAKPEEWPKSEYSQLEDDEYEAPFD 221
Query: 178 WEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
AKPNK++F VES GALK ENI++ G++VLK+KL+++Q QL
Sbjct: 222 PMAKPNKFWFTVESTGALKAENIILSGISVLKKKLADIQNQL 263
>gi|312083749|ref|XP_003143992.1| DNA-directed RNA polymerase II polypeptide [Loa loa]
gi|307760845|gb|EFO20079.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Loa loa]
Length = 275
Score = 283 bits (723), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 134/222 (60%), Positives = 176/222 (79%), Gaps = 6/222 (2%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAIDWVQ+E+N++VL DEFIA R+GLIPLTSD VVD++ +SRDC C +FC C+VE L
Sbjct: 45 MAIDWVQIESNTSVLHDEFIAHRLGLIPLTSDSVVDQMQFSRDCQCTEFCQFCAVEMRLR 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVP---VTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
V+C D+ R VTTADL++++ V P V RNR+A E +DDILIVKLRKGQ++ +
Sbjct: 105 VRCDDEGIRAVTTADLETSNPDVAPACGVHIRNRNA---EESASDDILIVKLRKGQDVDI 161
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYN 177
+ AKKGFGKEHAKWNPT V FEYDPDN++RHT+ KP+EWPKSEYS+L++ ++EA ++
Sbjct: 162 KCIAKKGFGKEHAKWNPTCCVSFEYDPDNALRHTVLAKPEEWPKSEYSQLEDDEYEASFD 221
Query: 178 WEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
AKPNK++F VES GALK ENI++ G++VLK+KL++LQ QL
Sbjct: 222 PMAKPNKFWFTVESTGALKAENIILSGISVLKKKLADLQNQL 263
>gi|432098388|gb|ELK28188.1| DNA-directed RNA polymerase II subunit RPB3 [Myotis davidii]
Length = 303
Score = 276 bits (706), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 122/188 (64%), Positives = 156/188 (82%)
Query: 35 VDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDAD 94
+ + YSRDCTC + C ECSVEFTLDV+C +DQTRH+T+ DL S RV+PVTSRNRD D
Sbjct: 107 IGELQYSRDCTCEELCPECSVEFTLDVRCNEDQTRHITSRDLISNSPRVIPVTSRNRDND 166
Query: 95 MNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFP 154
N+Y + DDILIVKLRKGQELRLRAYA+KGFGKEHAKWNPTAGV FEYDP+N++RHT++P
Sbjct: 167 PNDYVDQDDILIVKLRKGQELRLRAYAEKGFGKEHAKWNPTAGVAFEYDPNNALRHTVYP 226
Query: 155 KPDEWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSN 214
KP+EWPKSEYSELDE + PY+ + ++++NVES G+L+PE IV+ ++ +K+KLS+
Sbjct: 227 KPEEWPKSEYSELDEDESLVPYDLNGEQERFYYNVESCGSLRPETIVLSALSGVKKKLSD 286
Query: 215 LQTQLAHD 222
QTQL+H+
Sbjct: 287 FQTQLSHE 294
>gi|67970900|dbj|BAE01792.1| unnamed protein product [Macaca fascicularis]
Length = 251
Score = 272 bits (696), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 123/161 (76%), Positives = 143/161 (88%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLIPNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK 161
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPK
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPK 205
>gi|308499659|ref|XP_003112015.1| CRE-RPB-3 protein [Caenorhabditis remanei]
gi|308268496|gb|EFP12449.1| CRE-RPB-3 protein [Caenorhabditis remanei]
Length = 297
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 123/243 (50%), Positives = 164/243 (67%), Gaps = 23/243 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ+E N++VL DEFIA R+GLIP SD V+++ Y+R+C C +FC ECS+ F L
Sbjct: 45 IAIDWVQIETNTSVLHDEFIAHRMGLIPFLSDYHVEKMQYTRECECAEFCDECSIPFILQ 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTS---------------------RNRDADMNEYG 99
+KC D+ T VTTADL+ + V V S R R ++
Sbjct: 105 MKCKDEATLAVTTADLRCMNNDTVIVCSKKVVTILACFQTVRPACGKALRERGTGREDFH 164
Query: 100 ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW 159
++ILIVKLRKGQEL L+AYAKKGFGKEHAKWNPT GV FEYDPDN++RHT++P +EW
Sbjct: 165 NREEILIVKLRKGQELNLKAYAKKGFGKEHAKWNPTCGVAFEYDPDNALRHTIYPNVEEW 224
Query: 160 PKSEYSEL--DETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT 217
P+S++S L D T+ EAP++ + KPNK+FF++E GAL + IV MG+ +LK+KL L
Sbjct: 225 PRSDHSALPEDSTEKEAPFDQDGKPNKFFFSIEGTGALPVQRIVTMGIGILKKKLEELNM 284
Query: 218 QLA 220
L+
Sbjct: 285 ALS 287
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDA 284
EAP++ + KPNK+FF++E GAL + IV MG+ +LK+KL L L+ EL A
Sbjct: 240 EAPFDQDGKPNKFFFSIEGTGALPVQRIVTMGIGILKKKLEELNMALSLELQAHA 294
>gi|268566109|ref|XP_002639637.1| C. briggsae CBR-RPB-3 protein [Caenorhabditis briggsae]
Length = 280
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 124/229 (54%), Positives = 164/229 (71%), Gaps = 8/229 (3%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ+E N++VL DEFIA R+GLIP SD V+++ Y+R C C +FC ECS+ F L
Sbjct: 45 IAIDWVQIETNTSVLHDEFIAHRMGLIPFLSDYHVEKMQYTR-CECAEFCDECSIPFILQ 103
Query: 61 VKCVDDQTRHVTTADLK--STDARVVPVTS---RNRDADMNEYGETDDILIVKLRKGQEL 115
KC D+ T VTTADL+ + V P R R A +E+ ++ILIVKLRKGQEL
Sbjct: 104 TKCTDEATLAVTTADLRPLGVETTVRPACGEALRERGAVRDEFHAREEILIVKLRKGQEL 163
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSEL--DETQHE 173
L+AYAKKGFGKEHAKWNPT GV FEYDPDN++RHT++P +EWPKS++S L D + E
Sbjct: 164 NLKAYAKKGFGKEHAKWNPTCGVAFEYDPDNALRHTIYPNVEEWPKSDHSSLPEDSAEKE 223
Query: 174 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
AP++ AKPNK++F++E GAL + IV MG+ +LK+KL L L+++
Sbjct: 224 APFDQNAKPNKFWFSIEGTGALPVQRIVTMGIGILKRKLEELNMALSNE 272
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDA 284
EAP++ AKPNK++F++E GAL + IV MG+ +LK+KL L L++EL A
Sbjct: 223 EAPFDQNAKPNKFWFSIEGTGALPVQRIVTMGIGILKRKLEELNMALSNELQAHA 277
>gi|86560996|ref|NP_492361.2| Protein RPB-3 [Caenorhabditis elegans]
gi|74834695|emb|CAB02268.2| Protein RPB-3 [Caenorhabditis elegans]
Length = 282
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 121/230 (52%), Positives = 163/230 (70%), Gaps = 8/230 (3%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ+E N++VL DEFIA R+GLIP SD V+++ Y+RDC C +FC ECS+ F L
Sbjct: 45 IAIDWVQIETNTSVLHDEFIAHRMGLIPFISDYHVEKMQYTRDCECAEFCDECSIPFILQ 104
Query: 61 VKCVDDQTRHVTTADL---KSTDARVVPVTS---RNRDADMNEYGETDDILIVKLRKGQE 114
+KC D+ T VTT L + D V P R R + +E+ ++ILIVKLRKGQE
Sbjct: 105 MKCKDEATLAVTTEHLMPMHNLDTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQE 164
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSEL--DETQH 172
L L+AY KKGFGKEHAKWNPT GV FEYDPDN++RHT++P +EWP+S++S L D T+
Sbjct: 165 LNLKAYVKKGFGKEHAKWNPTCGVAFEYDPDNALRHTIYPNVEEWPRSDHSSLPEDSTEK 224
Query: 173 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
EAP+ + KPNK++F++E GAL + IV MG+ +LK+KL L L+++
Sbjct: 225 EAPFEPDNKPNKFWFSIEGTGALPAQRIVTMGIGILKRKLEELNMALSNE 274
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDA 284
EAP+ + KPNK++F++E GAL + IV MG+ +LK+KL L L++EL A
Sbjct: 225 EAPFEPDNKPNKFWFSIEGTGALPAQRIVTMGIGILKRKLEELNMALSNELQAHA 279
>gi|341882009|gb|EGT37944.1| hypothetical protein CAEBREN_16087 [Caenorhabditis brenneri]
gi|341882040|gb|EGT37975.1| hypothetical protein CAEBREN_14407 [Caenorhabditis brenneri]
Length = 281
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 119/227 (52%), Positives = 159/227 (70%), Gaps = 7/227 (3%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ+E N++VL DEFIA R+GLIP SD V+++ Y+R+C C +FC ECS+ F L
Sbjct: 45 IAIDWVQIETNTSVLHDEFIAHRMGLIPFISDYHVEKMQYTRECECAEFCDECSIPFILQ 104
Query: 61 VKCVDDQTRHVTTADL--KSTDARVVPVTS---RNRDADMNEYGETDDILIVKLRKGQEL 115
+KC D+ T VTT L D V P R R + E+ ++ILIVKLRKGQEL
Sbjct: 105 MKCKDEATLAVTTEHLIPLKDDTTVRPACGKALRERGSAREEFHNREEILIVKLRKGQEL 164
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSEL--DETQHE 173
L+AYAKKGFGKEHAKWNPT GV FEYDPDN++RHT++P +EWP+S++S L D + E
Sbjct: 165 NLKAYAKKGFGKEHAKWNPTTGVAFEYDPDNALRHTIYPSVEEWPRSDHSSLPEDSVEKE 224
Query: 174 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
AP++ KPNK++F++E G+L + IV MG+ +LK+KL L L+
Sbjct: 225 APFDPHGKPNKFWFSIEGTGSLPAQRIVTMGIGILKRKLEELNMALS 271
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 227 VINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDA 284
V EAP++ KPNK++F++E G+L + IV MG+ +LK+KL L L+ EL A
Sbjct: 221 VEKEAPFDPHGKPNKFWFSIEGTGSLPAQRIVTMGIGILKRKLEELNMALSVELQAHA 278
>gi|339251862|ref|XP_003371154.1| putative biotin--protein ligase [Trichinella spiralis]
gi|316968644|gb|EFV52901.1| putative biotin--protein ligase [Trichinella spiralis]
Length = 798
Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 158/244 (64%), Gaps = 28/244 (11%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDV 61
+ID V + +N++V DEFIA RIGLIPLTSD VV+R+ YSRDC C+ C+EC++ +D
Sbjct: 38 SIDTVTIHSNTSVFCDEFIAHRIGLIPLTSDNVVERLRYSRDCPCMGGCNECAIHLNIDK 97
Query: 62 KCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYA 121
KC T+ADLKS D+RVVP LR GQEL + A
Sbjct: 98 KCFTHNGDFATSADLKSQDSRVVP-----------------------LRDGQELIVTCVA 134
Query: 122 KKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAK 181
+KG GKEHAKWNPTAGV FEYDPDN+ RHT +P P EWPKSEY+ELD+ +AP N +
Sbjct: 135 RKGIGKEHAKWNPTAGVGFEYDPDNAHRHTTYPIPREWPKSEYTELDDELDQAPVNLLEE 194
Query: 182 PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD----RVFYVINEAPYNWEA 237
P K++F VES G+LKPENIV+MG+ VL++KL++L + + ++ +FY+ N A
Sbjct: 195 PKKFWFTVESCGSLKPENIVLMGLNVLRRKLTDLHSHMLNEDSKINLFYLSARKIMNTFA 254
Query: 238 K-PN 240
K PN
Sbjct: 255 KAPN 258
>gi|167517689|ref|XP_001743185.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778284|gb|EDQ91899.1| predicted protein [Monosiga brevicollis MX1]
Length = 276
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/220 (51%), Positives = 142/220 (64%), Gaps = 12/220 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTL 59
MAID V + N++VL DEF+A R+GLIPLTS E D+ Y RDCT C C C V TL
Sbjct: 49 MAIDAVHIAKNTSVLHDEFLAHRLGLIPLTS-EAADKFYYPRDCTLCEMGCDHCQVMLTL 107
Query: 60 DVKCVDDQTRHVTTADLKSTDA----RVVPVTSRNRDADMNEYGETDDILIVKLRKGQEL 115
DV+ ++ HVTT DL S A V P+++R E + I+I KL KGQ +
Sbjct: 108 DVEGHTEEPTHVTTDDLISQAAGDFMAVKPISARE------ESNIRNPIVICKLAKGQRI 161
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAP 175
+L A+AKKGFGKEHAKW PTAG+ FEYDPDN++RHT F P WPKSE+S L E +HEA
Sbjct: 162 QLTAFAKKGFGKEHAKWCPTAGIAFEYDPDNALRHTFFEVPSMWPKSEFSTLPEGEHEAE 221
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
Y+++ KP+ YF VES GAL I+ + L +KLSNL
Sbjct: 222 YDYKGKPSTYFMTVESTGALPAPLILFSALESLHEKLSNL 261
>gi|367035840|ref|XP_003667202.1| hypothetical protein MYCTH_2312782 [Myceliophthora thermophila ATCC
42464]
gi|347014475|gb|AEO61957.1| hypothetical protein MYCTH_2312782 [Myceliophthora thermophila ATCC
42464]
Length = 337
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 110/228 (48%), Positives = 145/228 (63%), Gaps = 12/228 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E NS+VL+DEFI+ R+GLIPL + E VD +LY+RDC C C CSV TL
Sbjct: 54 IAIDLVEIEENSSVLADEFISHRLGLIPLNA-EGVDNLLYARDCDCDGCCEHCSVRLTLH 112
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC ++ HV DL T R+ V D G LI+KLR GQE++L
Sbjct: 113 AKCTGEENMHVFARDLVPTGDRINQVLGTPIVNDAEGLGP----LILKLRPGQEIKLECI 168
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-----PKPDEWPKSEYSELDETQHEA- 174
AKKG KEHAKW P+A + FEYDP N +RHT + PK EWP SEY+ +E E
Sbjct: 169 AKKGIAKEHAKWAPSAAIGFEYDPHNKLRHTDYWYESDPKA-EWPPSEYAAWEEPPQEGE 227
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
P++++A PN+++FNVE+AGAL P+ IV G+ VL+QKL+ L +LA D
Sbjct: 228 PFDYDAVPNRFYFNVETAGALPPDVIVSEGIKVLQQKLAGLIHELAED 275
>gi|116205067|ref|XP_001228344.1| hypothetical protein CHGG_10417 [Chaetomium globosum CBS 148.51]
gi|88176545|gb|EAQ84013.1| hypothetical protein CHGG_10417 [Chaetomium globosum CBS 148.51]
Length = 338
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/225 (47%), Positives = 142/225 (63%), Gaps = 10/225 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E NS+VL+DEFIA R+GLIPL +D V + +L++RDC C C CSV TL
Sbjct: 54 IAIDLVEIEENSSVLADEFIAHRLGLIPLNADGV-EGLLFARDCDCDGCCEHCSVRLTLH 112
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D+ HV DL T R+ V +D G LI+KLR GQE++L
Sbjct: 113 AKCTGDENMHVFARDLVPTGERINQVLGTPVVSDSEGLG----ALILKLRPGQEIKLECI 168
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P+A + FEYDP N +RHT F EWP SEY+ +E E P
Sbjct: 169 AKKGIAKEHAKWAPSAAIGFEYDPHNKLRHTDFWYETDAKTEWPPSEYAAWEEPPQEGEP 228
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
++++A PN+++FNVESAG L P+ IV G+ V++QKL+ L +LA
Sbjct: 229 FDYDAVPNRFYFNVESAGNLPPDTIVSEGIKVIQQKLAGLIHELA 273
>gi|340976001|gb|EGS23116.1| RNA polymerase II subunit 3-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 344
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 109/228 (47%), Positives = 148/228 (64%), Gaps = 18/228 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL+DEFIA R+GLIPL + E VD++LYSRDC C +C +CSV +L
Sbjct: 55 IAIDLVEIEVNTSVLADEFIAHRLGLIPLNA-EGVDQLLYSRDCDCDGYCEQCSVRLSLH 113
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-NRDADMNEYGETDDI--LIVKLRKGQELRL 117
KC D+ HV + DL VPV R N++ + D + LI+KLR GQE++L
Sbjct: 114 AKCTGDENMHVFSRDL-------VPVGERVNQNLGTPIINDPDGLGPLILKLRPGQEIKL 166
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-----PKPDEWPKSEYSELDETQH 172
AKKG KEHAKW P+A + FEYDP N + H PK EWP SEY+E +E
Sbjct: 167 ECIAKKGIAKEHAKWAPSAAIGFEYDPHNKLHHLDLWYEQDPK-AEWPPSEYAEWEEPPQ 225
Query: 173 EA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
E P++++A PN+++FNVESAG L P+ IV G+ VL+QKL+ L +L
Sbjct: 226 EGEPFDYDAVPNRFYFNVESAGPLPPDAIVQEGIKVLQQKLAGLIHEL 273
>gi|326433417|gb|EGD78987.1| DNA-directed RNA polymerase II subunit RPB3 [Salpingoeca sp. ATCC
50818]
Length = 271
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 139/224 (62%), Gaps = 8/224 (3%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V +E N+TVL DEFIA R+GLIPLTS+ Y RDCTC C C V+ L
Sbjct: 46 LAIDDVHIEINTTVLHDEFIAHRLGLIPLTSERAA-HFNYMRDCTCDAGCPNCVVKLELH 104
Query: 61 VKCVDDQTRHVTTADLKST----DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
V C D VTT L+ST D VVPV + D + G + I+I K+R+GQEL+
Sbjct: 105 VACRDAHQMEVTTEHLRSTLDGPDTSVVPVATAAERRDQSIQG--NHIVICKIRQGQELK 162
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSEL-DETQHEAP 175
L YA+KG GKEHAKW PTA V +EYDPDN++RHT + P+ WP+SEYS+L D+ +HEA
Sbjct: 163 LTCYARKGVGKEHAKWIPTAAVAYEYDPDNALRHTFYEHPEMWPRSEYSQLTDDDKHEAD 222
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
Y+ + + ++ VES GA+ PE I + L KL +L L
Sbjct: 223 YDPDGTADTFYMTVESTGAMPPEKICQSALESLFTKLVDLDNAL 266
>gi|328768461|gb|EGF78507.1| hypothetical protein BATDEDRAFT_20338 [Batrachochytrium
dendrobatidis JAM81]
Length = 285
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 146/221 (66%), Gaps = 15/221 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+ E+NS+VL+DEF+A R+GLIPL S++V I Y+RDC+C +C +CSVE L+
Sbjct: 53 VAIDLVEFESNSSVLTDEFLAHRLGLIPLNSEQV-GTITYTRDCSCTQYCPQCSVELHLN 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C ++ TR VT+ DL S+ + ++P+ + D+ I+I KLRKGQE+ LR
Sbjct: 112 VRCDEEFTREVTSRDLISSHSSIMPIIHGDDDSG---------IMIAKLRKGQEINLRCI 162
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD----EWPKSEYSELD-ETQHEAP 175
AKKG KEHAKW+P AG+ FEYDP N +RHT + D EWP S L+ E + P
Sbjct: 163 AKKGTAKEHAKWSPCAGIAFEYDPHNRLRHTTYWVEDDIKSEWPVSANGLLEPEVVDDEP 222
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+++ AKP+K++ VE GA+ P+ IV + +++ KLS +Q
Sbjct: 223 FDFNAKPDKFYMTVEGTGAIDPKEIVTTALRIMQTKLSLVQ 263
>gi|367055384|ref|XP_003658070.1| hypothetical protein THITE_2124530 [Thielavia terrestris NRRL 8126]
gi|347005336|gb|AEO71734.1| hypothetical protein THITE_2124530 [Thielavia terrestris NRRL 8126]
Length = 337
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 107/225 (47%), Positives = 146/225 (64%), Gaps = 10/225 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E NS+VL+DEFIA R+GLIPL S+ V D +L SR+C C C CSV TL
Sbjct: 53 IAIDLVEIEENSSVLADEFIAHRLGLIPLNSEGVKD-MLTSRECDCDGRCENCSVTLTLH 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC ++ HV DL T R+ V +D G LI+KLR GQE++L
Sbjct: 112 AKCTGEENMHVFARDLVPTGERINQVIGTPVLSDAEGLGP----LILKLRPGQEIKLECI 167
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT-LFPKPD---EWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P+A + FEYDP N + H L+ + D EWP SEY+E +E E P
Sbjct: 168 AKKGIAKEHAKWAPSAAIGFEYDPHNKLHHLDLWYEQDPKAEWPPSEYAEWEEPPQEGEP 227
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
++++A PN+++FNVESAG+L P+ IVI G+ V++QKL++L +L+
Sbjct: 228 FDYDAVPNRFYFNVESAGSLPPDAIVIEGIQVIQQKLASLIKELS 272
>gi|320166369|gb|EFW43268.1| polymerase II polypeptide C [Capsaspora owczarzaki ATCC 30864]
Length = 270
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 135/215 (62%), Gaps = 10/215 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID VQ + NS+VL DEF+A R+GL+PL S E Y +C C C+ C+V TL+
Sbjct: 45 MAIDLVQFDENSSVLHDEFVAHRLGLLPLAS-ETAGEFDYLAECDCDGGCNRCTVSLTLE 103
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ V DL+S+D VVP++ R+ E D+++VKL GQ ++L A
Sbjct: 104 A----EGPCSVVARDLRSSDESVVPISQRDASG-----SEQHDVVLVKLGAGQRIKLTAI 154
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKG GKEHAKWNPT GV EYDPDN +RHT + P WP+S SEL Q EAP++ A
Sbjct: 155 AKKGIGKEHAKWNPTCGVSMEYDPDNKLRHTTYYDPQNWPQSHLSELPAGQCEAPFDINA 214
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
K +K++ NVE++G + P +IV+ ++VLKQKL L
Sbjct: 215 KADKFWLNVEASGVIPPADIVLNAISVLKQKLKTL 249
>gi|148679203|gb|EDL11150.1| mCG12281 [Mus musculus]
Length = 138
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 87/120 (72%), Positives = 108/120 (90%)
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKS 162
DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKS
Sbjct: 10 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKS 69
Query: 163 EYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
EYSELDE + +APY+ KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 70 EYSELDEDESQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 129
>gi|342882719|gb|EGU83319.1| hypothetical protein FOXB_06170 [Fusarium oxysporum Fo5176]
Length = 340
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 148/247 (59%), Gaps = 15/247 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E NS+VL+DEFIA R+GLIPL S + VD + YSRDC C +C +CSV TL
Sbjct: 56 IAIDLVEIETNSSVLADEFIAHRLGLIPLDS-KGVDELNYSRDCDCEQYCEQCSVTLTLH 114
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D+ V DL D R + D YG LI KLRKGQEL++
Sbjct: 115 AKCTSDEIMKVYARDL-VVDGRHMNGVGSPVITDPEGYG----CLIAKLRKGQELKISCI 169
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF------PKPDEWPKSEYSELDETQHEA 174
AKKG KEHAKW PT+ V FEYDP N + H + EWPKS+Y+E +E E
Sbjct: 170 AKKGIAKEHAKWMPTSAVGFEYDPHNKLHHIDWWFENDTDPAVEWPKSKYAEWEEPPQEG 229
Query: 175 -PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPY 233
P++++A PN+++F VE++G+++P+ IV G+ VL+QK+ L L D Y +EA +
Sbjct: 230 EPFDYDAVPNRFYFEVETSGSMEPDQIVQNGIRVLQQKIGGLLKGL--DPRKYGGDEAEF 287
Query: 234 NWEAKPN 240
+ P+
Sbjct: 288 DGPRSPD 294
>gi|407925105|gb|EKG18126.1| DNA-directed RNA polymerase RBP11-like protein [Macrophomina
phaseolina MS6]
Length = 287
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 141/231 (61%), Gaps = 12/231 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V++E N++VL+DEFI R+GLIPL S D + Y+RDC C +C CSV TL+
Sbjct: 1 MAIDLVEVEKNTSVLADEFICHRLGLIPLNSRGCED-VAYTRDCDCEQYCENCSVLLTLN 59
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D+ V DL + AR D N +G +I KLRKGQEL++R
Sbjct: 60 ARCTGDEVMTVYARDLLVSAARANEWVGSPVIKDPNGHG----AIICKLRKGQELKMRCI 115
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD----EWPKSEYS--ELDETQHEA 174
AKKG KEHAKW PTA + FEYDP N +RH + D EWP S+ + E D Q
Sbjct: 116 AKKGIAKEHAKWAPTAAIGFEYDPHNKLRHLEYWFEDDPQKEWPISDNANFEGDPPQEGE 175
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL-AHDRV 224
P+N++A+P +++FN+ES G L+P+ I++ GV VL+QKL+ + +L DR
Sbjct: 176 PFNYDAQPTQFYFNLESVGGLEPDTIMLQGVKVLQQKLAEVIGELTGGDRA 226
>gi|85082680|ref|XP_956964.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
crassa OR74A]
gi|7801032|emb|CAB91428.1| probable DNA-directed RNA polymerase II chain RPB3 [Neurospora
crassa]
gi|28918046|gb|EAA27728.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
crassa OR74A]
gi|336468167|gb|EGO56330.1| hypothetical protein NEUTE1DRAFT_83471 [Neurospora tetrasperma FGSC
2508]
gi|350289588|gb|EGZ70813.1| DNA-directed RNA polymerase II 33 kDa polypeptide [Neurospora
tetrasperma FGSC 2509]
Length = 337
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 140/225 (62%), Gaps = 12/225 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++EANS+VL+DEFIA R+GLIPL + E ++++LYSRDC C ++C CSV L
Sbjct: 54 IAIDLVEIEANSSVLADEFIAHRLGLIPLNA-EGIEQLLYSRDCDCDEYCEHCSVTLNLH 112
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D V DL RV V D G LI+KLR GQE++L+
Sbjct: 113 AKCTGDDIMQVCARDLVPVGDRVNQVLGSPIINDPEGQGP----LILKLRHGQEIKLQCI 168
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-----PKPDEWPKSEYSELDETQHEA- 174
AKKG KEH+KW P+A + FEYDP N + H PK EWP SEY++ +E E
Sbjct: 169 AKKGIAKEHSKWAPSAAIGFEYDPHNKLHHLDLWYEQDPK-KEWPPSEYADWEEPPQEGE 227
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
P++++A P ++++NVE+AG + P+ IV G+ V++QKL+ L +L
Sbjct: 228 PFDYDAVPQRFYYNVETAGPIPPDAIVTEGIKVIQQKLAGLIHEL 272
>gi|171689616|ref|XP_001909748.1| hypothetical protein [Podospora anserina S mat+]
gi|170944770|emb|CAP70881.1| unnamed protein product [Podospora anserina S mat+]
Length = 334
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 101/225 (44%), Positives = 141/225 (62%), Gaps = 12/225 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+NS+VL+DEFIA R+GLIPL + E V+ +LYSRDC C ++C CSV+ TL
Sbjct: 54 IAIDLVEIESNSSVLADEFIAHRLGLIPLNA-EGVEHLLYSRDCDCEEYCENCSVKLTLH 112
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC + V+ DL R+ D + G LI+KLR QE++L
Sbjct: 113 AKCTGYENMSVSARDLVPVGERINQSLGTPVINDKDGTGP----LILKLRPEQEIKLECI 168
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-----PKPDEWPKSEYSELDETQHEA- 174
AKKG KEHAKW P+A + FEYDP N +RH PK EWP SEY++ +E E
Sbjct: 169 AKKGIAKEHAKWAPSAAIGFEYDPHNKLRHLDLWYEKDPK-SEWPPSEYAKWEEPPVEGE 227
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
P++++A PN +++NVE+AG L P+ IV G+ V++QKL+ L +L
Sbjct: 228 PFDFDAVPNHFYYNVETAGNLPPDGIVTEGIKVIQQKLAGLIHEL 272
>gi|406859740|gb|EKD12803.1| RNA polymerase II subunit 3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 334
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 142/224 (63%), Gaps = 10/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V++EAN++VL+DEF+A R+GL+PL S + D + Y+RDC C +C CSV +L
Sbjct: 53 MAIDTVEIEANTSVLADEFLAHRLGLVPLVSKNIED-VNYTRDCECESYCELCSVVLSLQ 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C ++ V DL R D + G +I KLR+GQELR+R
Sbjct: 112 ARCTSEEIMKVYARDLVVDPNRANQYVGNPVITDEDGLG----TVICKLRQGQELRMRCI 167
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT-LFPKPD---EWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P + V FEYDP+N +RHT L+ + D EWPKS+Y++ +E Q E P
Sbjct: 168 AKKGIAKEHAKWAPVSAVAFEYDPNNKLRHTDLWYEADPAVEWPKSKYADWEEPQQEGEP 227
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++++A P K++F VES G L+P+ I+ G+ V++QKL+++ L
Sbjct: 228 FDYDAVPTKFYFEVESVGNLEPDAIIQQGIKVMQQKLASVIQDL 271
>gi|66801649|ref|XP_629750.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74851108|sp|Q54DH7.1|RPB3_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II subunit C
gi|60463138|gb|EAL61332.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 302
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 153/256 (59%), Gaps = 41/256 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
M ID V+ E+N++VL DEFIA R+GLIPL SD + D+ Y+RDC+C D C +CSVE L+
Sbjct: 50 MCIDLVEFESNNSVLCDEFIAHRLGLIPLVSDNI-DKFCYTRDCSCSDRCDQCSVELRLN 108
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC +++ R VT++DL S ++ V+PV+S+ ++ + +I IVKLR+GQE++LRA
Sbjct: 109 VKCTENRPRDVTSSDLLSQNSAVIPVSSQVTSSNSEQ-----EIPIVKLRRGQEIKLRAI 163
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDP-----DNSMRHTLFPKPDEWPKS------EYSELDE 169
AKKG GKEHAKW+P+ +++ P N + + +EW S YS
Sbjct: 164 AKKGVGKEHAKWSPSCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQS 223
Query: 170 TQH---EAPY---------------------NWEAKPNKYFFNVESAGALKPENIVIMGV 205
TQ E P + E K +K+ F VES+GALKPE+IV+ +
Sbjct: 224 TQQVTIEDPLRCVYCLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAI 283
Query: 206 TVLKQKLSNLQTQLAH 221
++K+KL+++Q Q+A
Sbjct: 284 QIIKRKLTDIQGQMAE 299
>gi|389741508|gb|EIM82696.1| insert subdomain of RNA polymerase alpha subunit [Stereum hirsutum
FP-91666 SS1]
Length = 411
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 113/300 (37%), Positives = 162/300 (54%), Gaps = 39/300 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL DEFIA R+G+IPL S + + Y+RDCTC CS CSV+ L+
Sbjct: 47 IAIDMVEIETNTTVLPDEFIAHRLGMIPLVSANCDEAMRYNRDCTCATNCSACSVKLHLN 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVP--VTSRNRDADMNEY-----------GETD----D 103
V C D++T +T+ L VVP T D E+ G+ D
Sbjct: 107 VACHDNRTMDITSNHLD-----VVPHDYTDYAADEQQEEFHKRIDTFGHPVGKNDPNVQP 161
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEW 159
+LI K+RKGQEL++R AKKG KEHAKW+P + V FEYDP N +RHT + EW
Sbjct: 162 VLICKIRKGQELKVRCIAKKGIAKEHAKWSPCSAVSFEYDPHNKLRHTSYWFEGDARSEW 221
Query: 160 PKSEYSELDE-TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
P SE ++ +E + + P+++ AKPNK++F VE+ G+L P+ +V+ G+ L+ KL+NL
Sbjct: 222 PLSENAKEEEPPRDDEPFDYNAKPNKFYFEVETDGSLGPQEVVMKGLGELQTKLANLILG 281
Query: 219 LAHDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 278
L D++ P + P P+ I G T + + T AH
Sbjct: 282 LKSDQLPSTDTALPGTGPSAPG------------APQTNGINGTTAGSPSVPSWGTGAAH 329
>gi|400600522|gb|EJP68196.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Beauveria bassiana ARSEF 2860]
Length = 350
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 137/227 (60%), Gaps = 15/227 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL+DEFIA R+GLIPL S +V D + YSRDC C +C +CS+ TL
Sbjct: 56 VAIDLVEIEINTSVLADEFIAHRLGLIPLDSKDV-DELNYSRDCDCEQYCEQCSITLTLH 114
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D+ V DL D R D + G L+ KLR+ QELRL+
Sbjct: 115 AKCTSDENMKVYARDL-IVDGRHATSIGTPIITDPDGVG----CLLAKLRRDQELRLKCV 169
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-------PKPDEWPKSEYSELD-ETQH 172
AKKG KEHAKW PT+ V FEYDP N + H PK DEWP S+Y + E Q
Sbjct: 170 AKKGIAKEHAKWMPTSAVGFEYDPHNKLHHLDMWFENDTNPK-DEWPVSKYGAWESEEQK 228
Query: 173 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
P+N++AKP +++F+VE++G ++P+ IV G+ VL+QK+ L L
Sbjct: 229 NEPFNYDAKPERFYFDVETSGGMEPDQIVQSGIRVLQQKIGGLLKGL 275
>gi|242214615|ref|XP_002473129.1| predicted protein [Postia placenta Mad-698-R]
gi|220727790|gb|EED81699.1| predicted protein [Postia placenta Mad-698-R]
Length = 265
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 142/221 (64%), Gaps = 8/221 (3%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL DEFIA R+G+IPL S + + Y+RDCTC+ +C C+VE TL
Sbjct: 42 VAIDMVEIETNTTVLPDEFIAHRLGMIPLVSSNCDEGMRYTRDCTCLSWCQFCAVELTLH 101
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRA 119
V C D VT+ L +D + N + ++ + +LI K+RKGQELRLR
Sbjct: 102 VACHDGVAMDVTSMHLDVSDE--LAKRPENFGHPVGKFDPSVSPVLIAKIRKGQELRLRC 159
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDET-QHEA 174
AKKG KEHAKW+P + V FEYDP N +RHT + + EWP SE ++ +E + +
Sbjct: 160 IAKKGVAKEHAKWSPCSAVAFEYDPHNKLRHTSYWFESDEKAEWPLSENAKEEEAPRDDQ 219
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
P+++ A+PN+++ +VE+ G+L P+ +V+ G+ L+ KL+NL
Sbjct: 220 PFDYNARPNRFYMDVETDGSLGPQEVVMKGLQELQTKLANL 260
>gi|440635232|gb|ELR05151.1| DNA-directed RNA polymerase II subunit C [Geomyces destructans
20631-21]
Length = 342
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 139/225 (61%), Gaps = 10/225 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V++EAN++VL+DEF+A R+GLIPL S D + YSRDC C +C +CSV L+
Sbjct: 52 MAIDLVEVEANTSVLADEFLAHRLGLIPLNSKNAAD-VNYSRDCECEQYCEQCSVTLFLN 110
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D+ V DL + D G +I KLRKGQEL+++
Sbjct: 111 AKCDSDEIMKVYARDLVVDSLKANAWVGNPIFTDEGGNGP----VICKLRKGQELKMKCI 166
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT-LFPKPD---EWPKSEYSELDETQHEA-P 175
AKKG KEHAKW PTA V FEYDP N +RH L+ + D EWPKS+Y++ +E E P
Sbjct: 167 AKKGIAKEHAKWAPTAAVGFEYDPHNKLRHMDLWFEEDPAKEWPKSKYADWEEPAQEGEP 226
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
++++A P ++F +ESAG L+P+ +V G+ VL+QKL+ + L+
Sbjct: 227 FDYDAVPGSFYFELESAGNLEPDAVVQEGIKVLQQKLATIIAGLS 271
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 33/46 (71%)
Query: 232 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 277
P++++A P ++F +ESAG L+P+ +V G+ VL+QKL+ + L+
Sbjct: 226 PFDYDAVPGSFYFELESAGNLEPDAVVQEGIKVLQQKLATIIAGLS 271
>gi|154310335|ref|XP_001554499.1| RNA polymerase II subunit 3 [Botryotinia fuckeliana B05.10]
gi|347828820|emb|CCD44517.1| similar to DNA-directed RNA polymerase II subunit RPB3 [Botryotinia
fuckeliana]
Length = 336
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 138/224 (61%), Gaps = 10/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID VQ+EAN++VL+DEFIA R+GLIPL S D ++Y+RDC C C CSV TL
Sbjct: 53 IAIDRVQIEANTSVLADEFIAHRLGLIPLNSKNC-DDVIYTRDCDCEGNCELCSVTLTLH 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D+ V DL R D + G +I KLRKGQELR++
Sbjct: 112 ARCTGDEIMKVYARDLVVDPQRANKWVGNPVITDPDGLGP----VIAKLRKGQELRMKCI 167
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT-LFPKPD---EWPKSEYSELDE-TQHEAP 175
A KG KEHAKW PTA V FEYDP N ++H L+ + D EWPKS+Y++ +E Q AP
Sbjct: 168 ALKGIAKEHAKWAPTAAVGFEYDPHNKLKHIDLWYEHDAAKEWPKSKYADWEEPAQEGAP 227
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++++A PN ++F VES G L+P+ I+ G+ V++QKL+ + L
Sbjct: 228 FDYDAVPNNFYFEVESIGNLEPDAIIQQGIKVMQQKLAAVLQDL 271
>gi|380478665|emb|CCF43467.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Colletotrichum higginsianum]
Length = 339
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 141/218 (64%), Gaps = 10/218 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++EAN++VL+DEFIA R+GLIPL S +V + +LY+RDC C +C CSV+ TL
Sbjct: 53 IAIDLVEIEANTSVLADEFIAHRLGLIPLQSKDV-NSLLYTRDCDCEQYCDNCSVKLTLH 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D+T V +DL R D G LI KLRKGQEL++
Sbjct: 112 ARCSSDETMKVYASDLIVDSFRQNGTVGNPVILDPEGQGS----LICKLRKGQELKISCI 167
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT-LFPKPD---EWPKSEYSELDETQHEA-P 175
AKKG KEHAKW PT+ V FEYDP N + H ++ + D EWP+S+Y+++++ E P
Sbjct: 168 AKKGIAKEHAKWMPTSAVGFEYDPHNKLHHLDMWFEEDAKAEWPESKYAKMEDPPQEGEP 227
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
++++A P+K++F VE G+L+P+ I+ G+ +L++KL+
Sbjct: 228 FDYDAVPSKFYFEVEGVGSLEPDQIIQEGIKILQEKLA 265
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 31/39 (79%)
Query: 232 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 270
P++++A P+K++F VE G+L+P+ I+ G+ +L++KL+
Sbjct: 227 PFDYDAVPSKFYFEVEGVGSLEPDQIIQEGIKILQEKLA 265
>gi|408391899|gb|EKJ71265.1| hypothetical protein FPSE_08504 [Fusarium pseudograminearum CS3096]
Length = 340
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 105/247 (42%), Positives = 145/247 (58%), Gaps = 15/247 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E NS+VL+DEFIA R+GLIPL S V + + YSRDC C +C +CSV TL
Sbjct: 56 IAIDLVEIETNSSVLADEFIAHRLGLIPLDSKGVAE-LNYSRDCDCEQYCEQCSVTLTLH 114
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D+ V DL D R D YG LI KLRK QEL++
Sbjct: 115 AKCTSDEIMKVYARDL-VVDGRHGNSVGSPMIMDPEGYG----CLIAKLRKHQELKISCI 169
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF------PKPDEWPKSEYSELDETQHEA 174
AKKG KEHAKW PT+ V FEYDP N + H + EWPKS+Y++ ++ E
Sbjct: 170 AKKGIAKEHAKWMPTSAVGFEYDPHNKLNHIDWWFENDTDPAVEWPKSKYAQWEDAPQEG 229
Query: 175 -PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPY 233
P++++A PN+++F VES+G+++P+ IV G+ VL+QK+ L L D Y +EA +
Sbjct: 230 EPFDYDAVPNRFYFEVESSGSMEPDQIVREGIRVLQQKIGGLLKGL--DPRKYGGDEADF 287
Query: 234 NWEAKPN 240
+ P+
Sbjct: 288 DGPRSPD 294
>gi|406606315|emb|CCH42306.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 321
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 107/263 (40%), Positives = 159/263 (60%), Gaps = 16/263 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL+DEFIA R+GLIPL S +V D++ YSRDCTC D+C++CSVE L
Sbjct: 42 LAIDSVEIETNTSVLADEFIAHRLGLIPLQSLDV-DKLSYSRDCTCDDYCNKCSVELELK 100
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ D T +V + DL V T N + + E + +LI KLR QEL +R
Sbjct: 101 VRADQDSTLNVYSKDL----FIVSQNTHLNIGSAIITDPEENGVLICKLRNEQELFIRCI 156
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSEL-DETQHEAP 175
AKKG KEHAKW+P A + FEYDP N ++HT + +EWP+SE E D E P
Sbjct: 157 AKKGIAKEHAKWSPCAAIGFEYDPWNKLKHTDYWYEEDIDEEWPRSENCEYEDPPNPEEP 216
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH---DRVFYVINEAP 232
++++A+PNKY+ NVE+ G+L P+ +V+ G+ L+ K++ + L ++ Y N++
Sbjct: 217 FDYKAEPNKYYINVETVGSLPPDQVVLRGLNELQSKVAGIVMALDKSDGNKTAYGGNQSQ 276
Query: 233 YNWEAKPNKYFFNVESAGALKPE 255
Y ++Y V A +P+
Sbjct: 277 Y---GAGSQYNAGVGDASNYEPQ 296
>gi|46109130|ref|XP_381623.1| hypothetical protein FG01447.1 [Gibberella zeae PH-1]
Length = 337
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 105/247 (42%), Positives = 145/247 (58%), Gaps = 15/247 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E NS+VL+DEFIA R+GLIPL S V + + YSRDC C +C +CSV TL
Sbjct: 53 IAIDLVEIETNSSVLADEFIAHRLGLIPLDSKGVAE-LNYSRDCDCEQYCEQCSVTLTLH 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D+ V DL D R D YG LI KLRK QEL++
Sbjct: 112 AKCTSDEIMKVYARDL-VVDGRHGNSVGSPMIMDPEGYG----CLIAKLRKHQELKISCI 166
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF------PKPDEWPKSEYSELDETQHEA 174
AKKG KEHAKW PT+ V FEYDP N + H + EWPKS+Y++ ++ E
Sbjct: 167 AKKGIAKEHAKWMPTSAVGFEYDPHNKLNHIDWWFENDTDPAVEWPKSKYAQWEDAPQEG 226
Query: 175 -PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPY 233
P++++A PN+++F VES+G+++P+ IV G+ VL+QK+ L L D Y +EA +
Sbjct: 227 EPFDYDAVPNRFYFEVESSGSMEPDQIVREGIRVLQQKIGGLLKGL--DPRKYGGDEADF 284
Query: 234 NWEAKPN 240
+ P+
Sbjct: 285 DGPRSPD 291
>gi|430812471|emb|CCJ30120.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 289
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 137/223 (61%), Gaps = 17/223 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL+DEFI R+G+IPL S V D+++Y+RDC C +C++CSV+ TL
Sbjct: 45 VAIDLVEIEINTSVLADEFITHRLGMIPLDSANVDDKLVYTRDCDCDQYCTKCSVQLTLY 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D T V + DL + N D + G ILI KLRK QELRL+
Sbjct: 105 AKCTSDGTMDVYSKDL---------IVEHNSTIDPDGKG----ILICKLRKAQELRLKCI 151
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEAPY 176
AKKG KEHAKW+P + + FEYDP N + HT + EWPKS+ S+ +E + +
Sbjct: 152 AKKGIAKEHAKWSPVSAIAFEYDPWNKLHHTDYWFEESSDAEWPKSKNSDWEEAPRDEAF 211
Query: 177 NWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++ A+P+K++F +E+ G+L P ++ G+ L+ KL+ + L
Sbjct: 212 DYTAEPSKFYFCIETVGSLTPNEVISQGIKYLQVKLATIVRDL 254
>gi|156055988|ref|XP_001593918.1| hypothetical protein SS1G_05346 [Sclerotinia sclerotiorum 1980]
gi|154703130|gb|EDO02869.1| hypothetical protein SS1G_05346 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 335
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 138/224 (61%), Gaps = 10/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID VQ+EAN++VL+DEFIA R+GLIPL S D ++Y+RDC C C CSV TL
Sbjct: 53 IAIDRVQIEANTSVLADEFIAHRLGLIPLNSKNC-DDVIYTRDCDCDGNCELCSVTLTLH 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D+ V DL R D + G +I KLRKGQELR++
Sbjct: 112 ARCTGDEIMKVYARDLVVDPQRANKWVGNPVITDPDGLGP----VIAKLRKGQELRMKCI 167
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT-LFPKPD---EWPKSEYSELDETQHE-AP 175
A KG KEHAKW PTA V FEYDP N ++H L+ + D EWPKS+Y++ +E E AP
Sbjct: 168 ALKGIAKEHAKWAPTAAVGFEYDPHNKLKHIDLWYEHDAAKEWPKSKYADWEEPPQEGAP 227
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++++A PN ++F VES G L+P+ I+ G+ V++QKL+ + L
Sbjct: 228 FDYDAVPNNFYFEVESIGNLEPDAIIQQGIKVMQQKLAAVLQDL 271
>gi|429857950|gb|ELA32787.1| RNA polymerase ii subunit 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 340
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 141/224 (62%), Gaps = 10/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++EAN++VL+DEFIA R+GLIPL S +V + +LYSRDC C +C CSV+ TL
Sbjct: 53 IAIDLVEIEANTSVLADEFIAHRLGLIPLHSKDV-NSLLYSRDCDCEQYCDNCSVKLTLH 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D+T V +DL R D G LI KLRKGQEL+L
Sbjct: 112 ARCSSDETMKVYASDLIVDSFRQNGTVGNPVIMDPEGQGS----LIAKLRKGQELKLSCI 167
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT-LFPKPD---EWPKSEYSELDETQHEA-P 175
AKKG KEHAKW PTA V FEYDP N + H ++ + D EWP+S+Y+++++ E
Sbjct: 168 AKKGIAKEHAKWMPTAAVGFEYDPHNKLHHLDMWYEEDAKAEWPESKYAKMEDPPQEGEA 227
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++++A P K++F VE G+L+P+ I+ G+ ++++K++ L L
Sbjct: 228 FDYDAVPEKFYFEVEGVGSLEPDQIIQEGIKIIQEKMALLLHML 271
>gi|358397037|gb|EHK46412.1| hypothetical protein TRIATDRAFT_153717, partial [Trichoderma
atroviride IMI 206040]
Length = 377
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 136/226 (60%), Gaps = 13/226 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E NS+VL+DEFIA R+GLIPL S + V+ + YSRDC C +C CSV TL
Sbjct: 56 IAIDLVEIEVNSSVLADEFIAHRLGLIPLDS-KGVNELNYSRDCDCEQYCEHCSVSLTLH 114
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D+ V DL D R D G LI KLRKGQEL++
Sbjct: 115 AKCTSDEIMKVYARDL-VVDGRHAGSVGNAVITDPEGLG----CLIAKLRKGQELKITCI 169
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-----PKPD-EWPKSEYSELDETQHEA 174
AKKG KEHAKW PT+ V FEYDP N + H P+ EWPKS+Y++ +E E
Sbjct: 170 AKKGIAKEHAKWMPTSAVGFEYDPHNKLHHLDMWFENNTDPEKEWPKSKYAQWEEPLQEG 229
Query: 175 -PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
P++++A PN+++F VE++G ++P+ I+ G+ VL+QK+ L L
Sbjct: 230 EPFSYDAVPNRFYFEVEASGTMEPDLIIQGGIRVLQQKIGGLLKGL 275
>gi|302803341|ref|XP_002983424.1| hypothetical protein SELMODRAFT_180179 [Selaginella moellendorffii]
gi|300149109|gb|EFJ15766.1| hypothetical protein SELMODRAFT_180179 [Selaginella moellendorffii]
Length = 320
Score = 183 bits (464), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 147/258 (56%), Gaps = 37/258 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++EANS+VL+DEFIA R+GLIPLTSD+ ++ + YSRDC D C CS+EF
Sbjct: 47 LAIDLVEIEANSSVLNDEFIAHRLGLIPLTSDKAME-MRYSRDCDECDGDGRCDYCSIEF 105
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
TL VKC ++T VT+ DL+S+D++VVPV S D D+ + + ILIVKLRKGQEL+L
Sbjct: 106 TLSVKCTSEETLDVTSHDLQSSDSQVVPVDSIGHDPDIENFNQKKGILIVKLRKGQELKL 165
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPD-----NSMRHTLFPKPDEWPKSEYSELDETQH 172
RA A+KG K+HAKW+P A V F+Y+PD N M + EW S +++ E
Sbjct: 166 RAIARKGIAKDHAKWSPAATVTFQYEPDIHINENLMETLSLEEKREWVDSSPTKVFEINP 225
Query: 173 EA---------PYNWE-------------------AKPNKYFFNVESAGALKPENIVIMG 204
E Y ++ K + + F VES GA+K + +
Sbjct: 226 ETQQVEVVDPEAYTYDDEVIKKAEAMGKPGLVEIYGKEDSFIFTVESTGAIKAAQMFLNA 285
Query: 205 VTVLKQKLSNLQTQLAHD 222
+ +L+ KL ++ D
Sbjct: 286 IEILRSKLDAVKLNFGSD 303
>gi|310794498|gb|EFQ29959.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Glomerella graminicola M1.001]
Length = 339
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 138/218 (63%), Gaps = 10/218 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++EAN++VL+DEFIA R+GLIPL S +V + +LY+RDC C +C CSV+ TL
Sbjct: 53 IAIDLVEIEANTSVLADEFIAHRLGLIPLQSKDV-NSLLYTRDCDCEQYCDNCSVKLTLH 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D T V +DL R D G LI KLRKGQEL++
Sbjct: 112 ARCSSDDTMKVYASDLIVDSFRQNGTVGNPVILDPEGQGS----LICKLRKGQELKISCI 167
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT-LFPKPD---EWPKSEYSELDETQHEA-P 175
AKKG KEHAKW PT+ V FEYDP N + H ++ + D EWP S+Y+++++ E P
Sbjct: 168 AKKGIAKEHAKWMPTSAVGFEYDPHNKLHHLDMWYEEDAKAEWPDSKYAKMEDPPQEGDP 227
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
++++A P K++F VE G+L+P+ I+ G+ +L++KL+
Sbjct: 228 FDYDAVPGKFYFEVEGVGSLEPDQIIQEGIKILQEKLA 265
>gi|344305493|gb|EGW35725.1| hypothetical protein SPAPADRAFT_58923 [Spathaspora passalidarum
NRRL Y-27907]
Length = 302
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 144/232 (62%), Gaps = 18/232 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ N++VL+DEFIA R+GLIPL S E ++ + YSRDCTC ++CS+CSV L
Sbjct: 48 LAIDLVEIDVNTSVLADEFIAHRLGLIPLVS-EGIENLTYSRDCTCDNYCSKCSVRLELT 106
Query: 61 VKCVDDQTRHVTTADLKS--TDARVV-PVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
KC D T V +DL +R+ PV RDA + LI KLRK QELR+
Sbjct: 107 AKCDSDSTMSVYASDLAKFHNGSRLGDPVI---RDA------QGRGSLICKLRKHQELRI 157
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQH- 172
AKKG KEHAKW+P A V FEYDP N ++HT + EWPKSE E +E
Sbjct: 158 VCIAKKGIAKEHAKWSPCAAVGFEYDPWNKLKHTDYWYEIDADKEWPKSENCEWEEMPDP 217
Query: 173 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRV 224
EAP+++ AKP ++F+VE+ G L P +V+ + L++KL+++ +L + V
Sbjct: 218 EAPFDYTAKPTNFYFDVETVGNLPPNEVVVRSIETLQRKLADIAIELNKESV 269
>gi|302754380|ref|XP_002960614.1| hypothetical protein SELMODRAFT_75337 [Selaginella moellendorffii]
gi|300171553|gb|EFJ38153.1| hypothetical protein SELMODRAFT_75337 [Selaginella moellendorffii]
Length = 320
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 147/258 (56%), Gaps = 37/258 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++EANS+VL+DEFIA R+GLIPLTSD+ ++ + YSRDC D C CS+EF
Sbjct: 47 LAIDLVEIEANSSVLNDEFIAHRLGLIPLTSDKAME-MRYSRDCDECDGDGRCDYCSIEF 105
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
TL VKC ++T VT+ DL+S+D++VVPV S D D+ + + ILIVKLRKGQEL+L
Sbjct: 106 TLSVKCTSEETLDVTSHDLQSSDSQVVPVDSIGHDPDIENFNQKKGILIVKLRKGQELKL 165
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPD-----NSMRHTLFPKPDEWPKSEYSELDETQH 172
RA A+KG K+HAKW+P A V F+Y+PD N M + EW S +++ E
Sbjct: 166 RAIARKGIAKDHAKWSPAATVTFQYEPDIHINENLMETLSVEEKREWVDSSPTKVFEINP 225
Query: 173 EA---------PYNWE-------------------AKPNKYFFNVESAGALKPENIVIMG 204
E Y ++ K + + F VES GA+K + +
Sbjct: 226 ETQQVEVIDPEAYTYDDEVIKKAEAMGKPGLVEIYGKEDSFIFTVESTGAIKAAQMFLNA 285
Query: 205 VTVLKQKLSNLQTQLAHD 222
+ +L+ KL ++ D
Sbjct: 286 IEILRSKLDAVKLNFGSD 303
>gi|346323448|gb|EGX93046.1| RNA polymerase II subunit 3 [Cordyceps militaris CM01]
Length = 364
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 135/225 (60%), Gaps = 12/225 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V++E N++VL+DEFIA R+GLIPL S +V D + YSRDC C +C +CS+ TL
Sbjct: 64 VAIELVEIEVNTSVLADEFIAHRLGLIPLDSKDV-DELNYSRDCDCDHYCEQCSITLTLH 122
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D+ V DL D R D + G L+ KLR+ QELRL+
Sbjct: 123 AKCTTDENMKVYARDL-IVDGRHATSIGTPVINDPDGVG----CLLAKLRRDQELRLKCV 177
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-----PKPD-EWPKSEYSELDETQHEA 174
AKKG KEHAKW PT+ V FEYDP N + H PD EWPKS+Y+ +
Sbjct: 178 AKKGIAKEHAKWMPTSAVGFEYDPHNKLHHLDMWFENNTDPDKEWPKSKYAGWEPENKGE 237
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
P+N++A P +FF+VE++G+++P+ IV G+ VL+QK+ L L
Sbjct: 238 PFNYDAVPENFFFDVETSGSMEPDQIVQSGIRVLQQKIGGLLKSL 282
>gi|330805244|ref|XP_003290595.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325079268|gb|EGC32876.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 303
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/262 (40%), Positives = 155/262 (59%), Gaps = 46/262 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
M+ID V+ EAN++VL DEFIA R+GLIPL SD V D+ Y+RDC+C + C +CSVEF L+
Sbjct: 50 MSIDLVEFEANNSVLCDEFIAHRLGLIPLVSDNV-DKFNYTRDCSCSERCDQCSVEFKLN 108
Query: 61 VKCVDDQTRHVTTADL---KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
VKC + + VT++DL + + V+PV+S+ + TD+I IVKLR+GQELRL
Sbjct: 109 VKCSNQRPIDVTSSDLIVVSNNNNSVIPVSSQTTE-------RTDEIPIVKLRQGQELRL 161
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDP-----DNSMRHTLFPKPDEWPKS------EYSE 166
RA AKKG GKEHAKW+P+ +++ P N M + +EW S YS
Sbjct: 162 RAIAKKGVGKEHAKWSPSCIATYQFQPIVTINQNRMDELSDKQKEEWVGSCPTKVFGYSP 221
Query: 167 LDETQH---EAPY---------------------NWEAKPNKYFFNVESAGALKPENIVI 202
+++Q + P + E K +K+ F VES+G+LKPE+IV+
Sbjct: 222 HNQSQPVSVDEPMRCMYCLECKKKAEAFGKPDLISIEQKQDKFIFTVESSGSLKPEDIVL 281
Query: 203 MGVTVLKQKLSNLQTQLAHDRV 224
+ ++K KL+++QTQL+ +
Sbjct: 282 SAIQIIKAKLNSIQTQLSEGMI 303
>gi|340517857|gb|EGR48100.1| predicted protein [Trichoderma reesei QM6a]
Length = 375
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 137/226 (60%), Gaps = 13/226 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E NS+VL+DEFIA R+GLIPL S + V+ + YSRDC C +C +CSV TL
Sbjct: 56 IAIDLVEMEVNSSVLADEFIAHRLGLIPLDS-KGVNELNYSRDCDCEQYCEQCSVSLTLH 114
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D+ V DL D R D + G LI KLRK QEL++
Sbjct: 115 AKCTSDEIMKVYARDL-VVDGRHANSVGSPIITDPDGLG----CLIAKLRKDQELKITCI 169
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-----PKPD-EWPKSEYSELDETQHEA 174
AKKG KEHAKW PT+ V FEYDP N + H P+ EWPKS+Y+E +E E
Sbjct: 170 AKKGIAKEHAKWMPTSAVGFEYDPHNKLHHMDMWFENNTDPEKEWPKSKYAEWEEPPQEG 229
Query: 175 -PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
P++++A PN+++F VE++G ++P+ I+ G+ VL+QK+ L L
Sbjct: 230 EPFDYDAVPNRFYFEVEASGTMEPDLIIQGGIRVLQQKIGALLKGL 275
>gi|336371374|gb|EGN99713.1| hypothetical protein SERLA73DRAFT_88301 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384130|gb|EGO25278.1| DNA-directed RNA polymerase II, subunit 3 [Serpula lacrymans var.
lacrymans S7.9]
Length = 400
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 142/239 (59%), Gaps = 32/239 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++EAN+TVL DEFIA R+G++PL S + I Y+RDCTC+ C CS+E LD
Sbjct: 47 IAIDIVEIEANTTVLPDEFIAHRLGMVPLVSANCEEGIRYTRDCTCLSGCQYCSIELRLD 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE--------------TDD--- 103
V C +++T VT+ L D+ AD E GE DD
Sbjct: 107 VACHENRTMEVTSNHLDVVDSHTY--------ADEGEAGEELTKRGENFGHPVGKDDVSL 158
Query: 104 --ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPD 157
+LI K+RKGQEL+LR AKKG KEHAKW+P + V FEYDP N +RHT +
Sbjct: 159 PPVLICKMRKGQELKLRCIAKKGIAKEHAKWSPCSAVSFEYDPYNKLRHTTHWFETDERA 218
Query: 158 EWPKSEYSELDE-TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
EWP SE ++ +E + + +++ AKP K++F VE+ G+L P+ V+ G+ L+ KL+NL
Sbjct: 219 EWPLSENAKEEEPPRDDEVFDFNAKPGKFYFEVETDGSLGPQEAVMRGLAELQTKLANL 277
>gi|50307587|ref|XP_453773.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642907|emb|CAH00869.1| KLLA0D16170p [Kluyveromyces lactis]
Length = 307
Score = 181 bits (460), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 141/220 (64%), Gaps = 10/220 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+GLIPL S ++ D+++Y RDC C D C CSVE L
Sbjct: 44 LAIDSVEIETNTTVLADEFIAHRLGLIPLQSADI-DQVVYCRDCYCEDHCDRCSVELILH 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V DL+ T + RN + + E + +LI KLRKGQE+R++
Sbjct: 103 AIGESESTTNVYAKDLQITS----DLKGRNIGHPIIQDREANGVLICKLRKGQEIRVKCI 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHE-AP 175
AKKG KEHAKW+P+A + FEYDP N ++HT + DEWP+S+ E ++ +E
Sbjct: 159 AKKGISKEHAKWSPSAAIEFEYDPWNKLKHTDYWYEQDARDEWPQSKNCEFEDPPNEDED 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
+++ AKPN ++ NVES G++ E +V+ G+ L+ K++++
Sbjct: 219 FDYRAKPNTFYINVESVGSITSEQVVVRGIKTLQDKVADI 258
>gi|344232873|gb|EGV64746.1| insert subdomain of RNA polymerase alpha subunit [Candida tenuis
ATCC 10573]
Length = 305
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 139/229 (60%), Gaps = 12/229 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ N++VL+DEFIA R+GLIPL SD + D + YSRDCTC +C++CSV+ L
Sbjct: 49 LAIDLVEIDVNTSVLADEFIAHRLGLIPLVSDSI-DELSYSRDCTCDQYCNKCSVKLELA 107
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D T ++ +DL RDA + LI KLRK QELR+
Sbjct: 108 AKCDTDSTMNIYASDLAKFQNGSTLGDPVIRDA------QGKGSLICKLRKHQELRITCI 161
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQH-EAP 175
AKKG KEHAKW+P + V FEYDP N ++HT + DEWPKSE E +E EAP
Sbjct: 162 AKKGIAKEHAKWSPCSAVGFEYDPWNKLKHTDYWYEESVEDEWPKSENCEWEEAPDPEAP 221
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRV 224
+++ A+ N ++ ++E+ G+L P ++ + + L+ KL+ + +L D V
Sbjct: 222 FDYNARANNFYVDIETIGSLSPNDVFVKSLETLQLKLAGISVELNKDTV 270
>gi|299751420|ref|XP_001830255.2| DNA-directed RNA polymerase II polypeptide [Coprinopsis cinerea
okayama7#130]
gi|298409367|gb|EAU91402.2| DNA-directed RNA polymerase II polypeptide [Coprinopsis cinerea
okayama7#130]
Length = 360
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/238 (42%), Positives = 144/238 (60%), Gaps = 29/238 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+ EAN++VL DE+IA R+G IPL S + I Y+RDCTC+ CS C+V+ LD
Sbjct: 40 VAIDLVEFEANTSVLPDEYIAHRLGQIPLISTNCDEAIRYTRDCTCLSQCSYCAVQLRLD 99
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRD------------------ADMNEYGETD 102
V C DD T VT+ L+ VVP+ ++ NE G T
Sbjct: 100 VACNDDTTMEVTSNHLE-----VVPLDDYMQEEIQHGEEKAKRTQWFGHPVGKNEPG-TP 153
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD----E 158
+LI K+RKGQELR++ AKKG KEHAKW+P + V FEYDP N +RHT + E
Sbjct: 154 PVLICKIRKGQELRVKCIAKKGIAKEHAKWSPCSAVSFEYDPYNKLRHTSYWYESDIQAE 213
Query: 159 WPKSEYSELDE-TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
WP SE ++ +E + + P+++ AKPNK++ +E+ G+L P+++V G+ L+ KL+NL
Sbjct: 214 WPLSENAQEEEPPRDDEPFDFNAKPNKFYLEIETDGSLAPQDVVEKGLNELQAKLANL 271
>gi|149237498|ref|XP_001524626.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452161|gb|EDK46417.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 336
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 143/231 (61%), Gaps = 17/231 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ N++VL+DEF+A R+GLIPL S + ++ +LYSRDC C ++CS+CSV L
Sbjct: 45 LAIDLVEIDVNTSVLADEFLAHRLGLIPLDS-QGIENLLYSRDCACDNYCSKCSVTLELT 103
Query: 61 VKCVDDQTRHVTTADLKSTDARVV--PVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
KC D T +V +DL + ++ P+ RD + LI KLR+ QE+RL
Sbjct: 104 AKCDSDSTMNVCASDLLKLNTELLGKPII---RDP------QNRGPLICKLRRHQEIRLT 154
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQH-E 173
AKKG KEHAKW+P A V FEYDP N ++HT + +EWPKSE L+E +
Sbjct: 155 CIAKKGIAKEHAKWSPCAAVGFEYDPWNKLKHTDYWYEVDAAEEWPKSENCRLEEAPDPD 214
Query: 174 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRV 224
A +++ A P+K++F+VE+ G L P +V+ GV L+ KL+ + +L V
Sbjct: 215 AKFDYNAVPSKFYFDVETVGNLPPNEVVLQGVQTLQAKLAAIALELTKSNV 265
>gi|294464103|gb|ADE77570.1| unknown [Picea sitchensis]
Length = 330
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 108/254 (42%), Positives = 146/254 (57%), Gaps = 39/254 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E+NS+VL+DEF+A R+GLIPL S+ +D + +SRDC D C CSVEF
Sbjct: 53 IAIDLVEIESNSSVLNDEFLAHRLGLIPLISERAMD-MRFSRDCDTCDGDAQCHYCSVEF 111
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEY--GETDDILIVKLRKGQEL 115
L+VKC DQT VT+ DL S+D R PV + +R ADMN + E I+IVKLR+GQEL
Sbjct: 112 KLNVKCDGDQTLDVTSLDLVSSDMRENPVVAVDRAADMNVFDASEQRGIIIVKLRRGQEL 171
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPD-----NSMRHTLFPKPDEWPKS-------- 162
RLRA A+KG GK+HAKW+P A V F Y+PD N M + EW +S
Sbjct: 172 RLRAIARKGIGKDHAKWSPAATVTFMYEPDIHINENLMETLTLDEKREWIESCPTKVFDI 231
Query: 163 -------------EYSELDETQHEAP-------YNWEAKPNKYFFNVESAGALKPENIVI 202
YS DE +A + AK + + F +ES GALK +++
Sbjct: 232 HPDTQQVFVVDAEAYSYDDEVIKKAEAMGKPGLVSINAKDDSFIFTIESTGALKASQMLL 291
Query: 203 MGVTVLKQKLSNLQ 216
+ +LKQKL ++
Sbjct: 292 NAIDILKQKLETVR 305
>gi|319411912|emb|CBQ73955.1| related to RPB3-DNA-directed RNA polymerase II chain [Sporisorium
reilianum SRZ2]
Length = 350
Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 140/238 (58%), Gaps = 18/238 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++ N+TVL DEF+A R+G+IPL S + ++ RDC C D C CSVE TL
Sbjct: 50 VAIDMVEVRNNTTVLPDEFLAHRLGMIPLLSMDCAKALVDHRDCACEDGCDRCSVELTLR 109
Query: 61 VKCVDDQTRHVTTADLKSTD-----------ARVVPVTSRNRDAD--MNEYGETDDILIV 107
+C VT+ DL +D A P ++ D + G T I++V
Sbjct: 110 ARCTTRGNLEVTSRDLIRSDTIESATIYDDDAMAEPAAPKHPDFGRPVGHDGSTPPIMLV 169
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL----FPKPDEWPKSE 163
K+ KGQEL LR A+KGF KEHAKW+P + V FEYDP N++RHT F EWP+
Sbjct: 170 KMSKGQELDLRCIARKGFAKEHAKWSPCSAVGFEYDPHNALRHTTYWYEFDAKQEWPEGA 229
Query: 164 YSELDETQHE-APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+E +E E AP+++ K NK++F+VE++G++ P IV G+ +L+ +++ + +L+
Sbjct: 230 NAEFEEPPQEGAPFDYNKKANKFYFDVEASGSMHPAEIVETGLGLLEYRVAQIVQELS 287
>gi|358378283|gb|EHK15965.1| hypothetical protein TRIVIDRAFT_195864 [Trichoderma virens Gv29-8]
Length = 338
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 137/226 (60%), Gaps = 13/226 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E NS+VL+DEFIA R+GLIPL S + V+ + YSRDC C +C +CSV TL
Sbjct: 56 IAIDLVEIEVNSSVLADEFIAHRLGLIPLDS-KGVNELNYSRDCDCEQYCEQCSVSLTLH 114
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D+ V DL + D R D G LI KLRK QEL++
Sbjct: 115 AKCTSDEIMKVYARDLVA-DGRHANSVGTPIITDPEGLG----CLIAKLRKDQELKITCI 169
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-----PKPD-EWPKSEYSELDETQHEA 174
AKKG KEHAKW PT+ V FEYDP N + H P+ EWPKS+Y++ +E E
Sbjct: 170 AKKGIAKEHAKWMPTSAVGFEYDPHNKLHHLDMWFENNTDPEKEWPKSKYAQWEEPLQEG 229
Query: 175 -PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
P++++A PN+++F VE++G ++P+ I+ G+ VL+QK+ L L
Sbjct: 230 EPFDYDAVPNRFYFEVEASGTMEPDLIIQGGIRVLQQKIGGLLKGL 275
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 33/45 (73%)
Query: 232 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
P++++A PN+++F VE++G ++P+ I+ G+ VL+QK+ L L
Sbjct: 231 PFDYDAVPNRFYFEVEASGTMEPDLIIQGGIRVLQQKIGGLLKGL 275
>gi|354547085|emb|CCE43818.1| hypothetical protein CPAR2_500440 [Candida parapsilosis]
Length = 317
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 145/229 (63%), Gaps = 12/229 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ N++VL+DEF+A R+GLIPL S E ++ + YSRDCTC ++C +CSV L
Sbjct: 45 LAIDLVEIDVNTSVLADEFLAHRLGLIPLVS-ENIENLKYSRDCTCDNYCPQCSVTLELT 103
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D T +V +DL + T RD E G +I KLRK QELRL
Sbjct: 104 AKCDTDSTMNVYASDLFKPPSPYSLGTPVYRD--HMERGP----IICKLRKHQELRLTCI 157
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQH-EAP 175
AKKG KEHAKW+P A + FEYDP N ++HT + +EWPKS+ + +E E
Sbjct: 158 AKKGIAKEHAKWSPCAAIGFEYDPWNKLKHTDYWYEVDANEEWPKSKNCDWEEQPDPEEK 217
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRV 224
++++AKPN ++F+VE+ G+L P ++VI + L++KL+++ +L D+V
Sbjct: 218 FDYKAKPNDFYFDVETVGSLAPNDVVIQAIKTLQEKLASVVIELDKDKV 266
>gi|302908578|ref|XP_003049900.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730836|gb|EEU44187.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 335
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/247 (41%), Positives = 146/247 (59%), Gaps = 15/247 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E NS+VL+DEFIA R+GLIPL S + V + SRDC C +C +CSV L
Sbjct: 53 IAIDLVEIEINSSVLADEFIAHRLGLIPLDS-KGVGELNNSRDCDCEQYCEQCSVTLNLH 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D+ V DL D R D YG LI KLRK QEL++
Sbjct: 112 AKCTSDEIMKVYARDL-VVDGRHANSVGSPVITDPEGYG----CLIAKLRKDQELKITCI 166
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRH-TLFPKPD-----EWPKSEYSELDETQHEA 174
AKKG KEHAKW PT+ V FEYDP N + H ++ + D EWPKS+Y++ ++ E
Sbjct: 167 AKKGIAKEHAKWMPTSAVGFEYDPHNKLHHLDMWFENDTDPEVEWPKSKYAQWEDPPQEG 226
Query: 175 -PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPY 233
P++++A PN+++F VE++G+++P+ IV G+ VL+QK+ L L D Y +EA +
Sbjct: 227 EPFDYDAVPNRFYFEVETSGSMEPDQIVQSGIRVLQQKIGGLLKGL--DPRKYGGDEAEF 284
Query: 234 NWEAKPN 240
+ P+
Sbjct: 285 DGPRSPD 291
>gi|320586301|gb|EFW98980.1| RNA polymerase 2 subunit 3 [Grosmannia clavigera kw1407]
Length = 362
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 138/224 (61%), Gaps = 10/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL+DEFIA R+GL+PL S D ++YSRDC C +C CS++ L
Sbjct: 54 IAIDIVEVEDNTSVLADEFIAHRLGLVPLNSKNA-DDVVYSRDCDCEQYCELCSIKLRLQ 112
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D+ V DL AR D + G ++I KLR+GQEL +
Sbjct: 113 AKCTSDEVMKVYARDLVVDPARPNQWVGTPVIRDPDGLG----VMIAKLRRGQELNMTCI 168
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT-LFPKPD---EWPKSEYSELDETQHEA-P 175
AKKG KEHAKW+PTA V FEYDP N + H ++ + D EWPKS+ + L+E E P
Sbjct: 169 AKKGIAKEHAKWSPTAAVGFEYDPHNKLHHMDMWYEQDADKEWPKSDNARLEEPAQEGEP 228
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++++A P +++++VES G ++P+ IV G+ L+QKL+ L +L
Sbjct: 229 FDYDATPGRFYYDVESIGQMEPDAIVQNGIKTLQQKLAALIHEL 272
>gi|346972452|gb|EGY15904.1| DNA-directed RNA polymerase II subunit RPB3 [Verticillium dahliae
VdLs.17]
Length = 342
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/218 (42%), Positives = 135/218 (61%), Gaps = 10/218 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++EAN++VL+DEFIA R+GLIPL S E + YSRDC C +C CSV+ TL
Sbjct: 53 VAIDLVEIEANTSVLADEFIAHRLGLIPLHSKEAA-SLHYSRDCDCEQYCDNCSVKLTLH 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D V +DL R D + G LI KLR+GQEL++
Sbjct: 112 ARCTSDDIMKVYASDLVVDSFRQNNTVGNPVITDPDGLGS----LIAKLRRGQELKVTCI 167
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT-LFPKPD---EWPKSEYSELDETQHEA-P 175
AKKG KEHAKW PT+ V FEYDP N + H L+ + D EWPKS ++ ++ E P
Sbjct: 168 AKKGIAKEHAKWMPTSAVGFEYDPHNKLHHIDLWYETDAATEWPKSRNADQEDPPQEGEP 227
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
++++AKP +++F+VE+ G+L P+ I+ G+ ++++KL+
Sbjct: 228 FDFDAKPGRFYFDVETVGSLDPDQIIQEGIKIMQEKLA 265
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 35/48 (72%)
Query: 232 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHE 279
P++++AKP +++F+VE+ G+L P+ I+ G+ ++++KL+ + L E
Sbjct: 227 PFDFDAKPGRFYFDVETVGSLDPDQIIQEGIKIMQEKLALMLHTLTGE 274
>gi|68478788|ref|XP_716556.1| hypothetical protein CaO19.1248 [Candida albicans SC5314]
gi|68478891|ref|XP_716500.1| hypothetical protein CaO19.8832 [Candida albicans SC5314]
gi|46438170|gb|EAK97505.1| hypothetical protein CaO19.8832 [Candida albicans SC5314]
gi|46438227|gb|EAK97561.1| hypothetical protein CaO19.1248 [Candida albicans SC5314]
gi|238881321|gb|EEQ44959.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida albicans
WO-1]
Length = 318
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 148/236 (62%), Gaps = 13/236 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ N++VL+DEF++ R+GLIPL S E +D + YSRDCTC ++CS+CSV L
Sbjct: 47 LAIDLVEIDVNTSVLADEFLSHRLGLIPLVS-EGIDNLTYSRDCTCDNYCSKCSVTLQLI 105
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
C + T +V +DL+ ++ S+ D + + + LI KLRK QEL L
Sbjct: 106 ANCATESTMNVYASDLQ----KMSHNGSKLGDPVIRD-PQARGPLICKLRKHQELSLTCI 160
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQH-EAP 175
AKKG KEHAKW+PTA + FEYDP N ++HT + EWPKS+ + +E EAP
Sbjct: 161 AKKGIAKEHAKWSPTAAIGFEYDPWNKLKHTDYWYEVDAEAEWPKSKNCDWEEAPDPEAP 220
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEA 231
++++AKP+ Y+F+VE+ G L P ++I + L+ KL+ + +L + V +NEA
Sbjct: 221 FDYKAKPSTYYFDVETVGNLPPNEVIIKSIETLQTKLAAISIELNKEDV--EVNEA 274
>gi|50418977|ref|XP_458009.1| DEHA2C07546p [Debaryomyces hansenii CBS767]
gi|49653675|emb|CAG86069.1| DEHA2C07546p [Debaryomyces hansenii CBS767]
Length = 311
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 142/231 (61%), Gaps = 16/231 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL+DEFI+ R+GLIPL S E +D + YSRDCTC +C+ CSV+ L
Sbjct: 49 LAIDLVEIEVNTSVLADEFISHRLGLIPLNS-EGIDNLSYSRDCTCDQYCANCSVKLELT 107
Query: 61 VKCVDDQTRHVTTADLKS--TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
KC D T V ++DL +++ +R D + G LI KLRK QELR+
Sbjct: 108 AKCDTDSTMSVYSSDLAKFHNGSKLGDPVAR----DNHRKGP----LICKLRKHQELRIT 159
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD----EWPKSEYSELDET-QHE 173
AKKG KEHAKW+P + FEYDP N ++HT + D EWPKS + +E +
Sbjct: 160 CIAKKGIAKEHAKWSPCGAIGFEYDPWNKLKHTDYWYEDDADEEWPKSANCDWEEAPDAD 219
Query: 174 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRV 224
AP++++AKP+ ++ +VE+ G L P +++ G+ L+ KL+ + +L D +
Sbjct: 220 APFDYKAKPSTFYMDVETVGNLPPNEVILKGIETLQLKLAGISMELNKDSI 270
>gi|296412916|ref|XP_002836165.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629972|emb|CAZ80356.1| unnamed protein product [Tuber melanosporum]
Length = 340
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 88/218 (40%), Positives = 138/218 (63%), Gaps = 12/218 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ N++V+ DEF+ R+G++PL S + D+++Y+RDC C +C CSV +L
Sbjct: 52 IAIDIVEIQTNTSVIPDEFLCHRLGMVPLDSTNIDDKLIYTRDCFCDQYCERCSVTLSLH 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C + V DL V+ ++ +N+ E +I KLRKGQELRL+
Sbjct: 112 ARCTGEDNVTVYARDL------VIAEGAQLGSPVIND-PEGQGTVICKLRKGQELRLKCI 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW PTA V FEYDP N +RH + +EWPKS+Y++ +E E P
Sbjct: 165 AKKGIAKEHAKWAPTAAVGFEYDPWNKLRHIDYWYEEDAKEEWPKSKYADWEEPPIEGEP 224
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
+N++A P++++ ++ESAG+L P+ I+ G+ L++KL+
Sbjct: 225 FNYDAVPSRFYLDIESAGSLPPDEILQQGIKYLQEKLA 262
>gi|443895704|dbj|GAC73049.1| RNA polymerase II, subunit POLR2C/RPB3 [Pseudozyma antarctica T-34]
Length = 346
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 140/238 (58%), Gaps = 18/238 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++ N+TVL DEF+A R+GLIPL S + ++ RDC C D C CSVE TL
Sbjct: 53 VAIDMVEIRNNTTVLPDEFLAHRLGLIPLLSMDCAKALVDHRDCACEDGCDRCSVELTLR 112
Query: 61 VKCVDDQTRHVTTADLKST-----------DARVVPVTSRNRD--ADMNEYGETDDILIV 107
+C VT+ DL + DA P ++ D + G I++V
Sbjct: 113 ARCTTRGNLEVTSRDLIRSDSIEGAQMFDDDAMNEPAAPKHPDFGRPVGHDGSMAPIMLV 172
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL----FPKPDEWPKSE 163
K+ KGQEL +R A+KGF KEHAKW+P + V FEYDP N++RHT + EWP+
Sbjct: 173 KMSKGQELDIRCIARKGFAKEHAKWSPCSAVGFEYDPHNALRHTTYWYEYDAKQEWPEGP 232
Query: 164 YSELDETQHE-APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+EL+E E AP+++ K N+++F+VES+G++ P IV G+ +L+ +++ + +L+
Sbjct: 233 NAELEEPPQEGAPFDYNKKANRFYFDVESSGSMHPAEIVETGLGLLEYRVAQIVQELS 290
>gi|126273908|ref|XP_001387335.1| 45 kDa subunit of RNA polymerase II [Scheffersomyces stipitis CBS
6054]
gi|126213205|gb|EAZ63312.1| 45 kDa subunit of RNA polymerase II [Scheffersomyces stipitis CBS
6054]
Length = 315
Score = 177 bits (448), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 143/231 (61%), Gaps = 16/231 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ N++VL+DEF++ R+GL+PL S E ++ + YSRDCTC ++C +CSV L
Sbjct: 47 LAIDLVEIDVNTSVLADEFLSHRLGLVPLVS-EGIENLTYSRDCTCDNYCPKCSVRLELT 105
Query: 61 VKCVDDQTRHVTTADLKS--TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
KC D T +V DL +R+ R D+ + G LI KLRK QELRL
Sbjct: 106 AKCDTDSTMNVYATDLAKFHNGSRLGDPVVR----DVQKRGP----LICKLRKHQELRLT 157
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQH-E 173
AKKG KEHAKW+P + V FEYDP N ++HT + +EWPKSE E +E +
Sbjct: 158 CIAKKGIAKEHAKWSPCSAVGFEYDPWNKLKHTDYWYEVDADEEWPKSENCEWEEVPDPD 217
Query: 174 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRV 224
AP++++AKP Y+ +VE+ G L P +V+ + L++KL+++ +L + V
Sbjct: 218 APFDYKAKPTSYYIDVETVGNLPPNEVVLRSIETLQRKLADIAIELNKESV 268
>gi|241954894|ref|XP_002420168.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223643509|emb|CAX42390.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 313
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 148/236 (62%), Gaps = 13/236 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ N++VL+DEF++ R+GLIPL S E +D + YSRDCTC ++CS+CSV L
Sbjct: 47 LAIDLVEIDVNTSVLADEFLSHRLGLIPLVS-EGIDNLTYSRDCTCDNYCSKCSVTLQLV 105
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
C + T +V +DL+ ++ S+ D + + + LI KLRK QEL L
Sbjct: 106 ANCATESTMNVYASDLQ----KMSHNGSKLGDPVIRD-PQARGPLICKLRKHQELSLTCI 160
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQH-EAP 175
AKKG KEHAKW+PTA + FEYDP N ++HT + EWPKS+ + +E EAP
Sbjct: 161 AKKGIAKEHAKWSPTAAIGFEYDPWNKLKHTDYWYEVDAEAEWPKSKNCDWEEAPDPEAP 220
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEA 231
++++AKP+ Y+F+VE+ G L P +VI + L+ KL+ + +L + V +NEA
Sbjct: 221 FDYKAKPSIYYFDVETVGNLPPNEVVIKSIETLQTKLAAISIELNKEDV--EVNEA 274
>gi|172213|gb|AAA34889.1| RNA polymerase II (EC 2.7.7.6) [Saccharomyces cerevisiae]
Length = 318
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 148/234 (63%), Gaps = 13/234 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+GLIPL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 44 LAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V + DL V + RN + + E + +LI KLRKGQEL+L
Sbjct: 103 AFGESESTTNVYSKDL----VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P AG+ FEYDP N ++HT + EWP+S+ E ++ +E P
Sbjct: 159 AKKGIAKEHAKWGPAAGIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDP 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL---QTQLAHDRVFY 226
++++A+ + ++ NVES G++ + +V+ G+ L++K++++ TQ+ D+V +
Sbjct: 219 FDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQDKVNF 272
>gi|170092317|ref|XP_001877380.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647239|gb|EDR11483.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 304
Score = 176 bits (447), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 97/245 (39%), Positives = 144/245 (58%), Gaps = 27/245 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL DEFIA R+G++PL S + I +RDCTC+ CS C++ L+
Sbjct: 47 VAIDMVEIEINTTVLPDEFIAHRLGMVPLLSSNCDEAIRSTRDCTCLAGCSFCAIMLVLN 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDA-----DMNEYGE------------TDD 103
V C DD T VT+A L V+P N D ++++ GE
Sbjct: 107 VGCHDDTTMEVTSAHLD-----VIPYPEENLDTSDSGEELSKRGEYFGHPVGKNEPGVAP 161
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEW 159
ILI K+RKGQEL+++ AKKG KEHAKW+P + V FEYDP N +RHT + + EW
Sbjct: 162 ILICKIRKGQELKVKCVAKKGIAKEHAKWSPCSAVSFEYDPYNKLRHTTYWFETDERGEW 221
Query: 160 PKSEYSELDE-TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
P S+ + +E + + P+++ AKPNK++F VE+ G+L P+ +V+ + L++ S T
Sbjct: 222 PMSDNGKEEEPPRDDEPFDFNAKPNKFYFEVETDGSLGPQEVVMKVLHKLRRTYSKFITT 281
Query: 219 LAHDR 223
+ R
Sbjct: 282 VGPSR 286
>gi|322710646|gb|EFZ02220.1| RNA polymerase II subunit 3 [Metarhizium anisopliae ARSEF 23]
Length = 362
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/227 (43%), Positives = 135/227 (59%), Gaps = 15/227 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL+DEFIA R+GLIPL + + V+ + YSRDC C +C +CSV TL
Sbjct: 64 IAIDLVEVEVNTSVLADEFIAHRLGLIPLNA-KGVNELNYSRDCDCEQYCEQCSVTLTLH 122
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D+ V DL D R D G LI KLRK QEL+L
Sbjct: 123 ARCTSDEIMKVYARDL-IVDGRHASQVGTPVINDPEGMG----CLIAKLRKDQELKLTCI 177
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-------PKPDEWPKSEYSEL-DETQH 172
AKKG KEHAKW PT+ V FEYDP N + H P+ EWPKS+Y+E D Q
Sbjct: 178 AKKGIAKEHAKWMPTSAVGFEYDPHNKLHHLDLWYENNTDPQ-KEWPKSKYAEWEDPPQD 236
Query: 173 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
P+N++A P++++F VE++G+++P+ IV G+ L+QK+ L L
Sbjct: 237 GEPFNYDAVPDRFYFEVETSGSMEPDQIVQGGIRALQQKIGALLKGL 283
>gi|322701809|gb|EFY93557.1| RNA polymerase II subunit 3 [Metarhizium acridum CQMa 102]
Length = 362
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 98/227 (43%), Positives = 135/227 (59%), Gaps = 15/227 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL+DEFIA R+GLIPL + + V+ + YSRDC C +C +CSV TL
Sbjct: 64 IAIDLVEVEVNTSVLADEFIAHRLGLIPLNA-KGVNELNYSRDCDCEQYCEQCSVTLTLH 122
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D+ V DL D R D G LI KLRK QEL+L
Sbjct: 123 ARCTSDEIMKVYARDL-IVDGRHASQVGTPVINDPEGMG----CLIAKLRKDQELKLTCI 177
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-------PKPDEWPKSEYSEL-DETQH 172
AKKG KEHAKW PT+ V FEYDP N + H P+ EWPKS+Y+E D Q
Sbjct: 178 AKKGIAKEHAKWMPTSAVGFEYDPHNKLHHLDLWYENNTDPQ-KEWPKSKYAEWEDPPQD 236
Query: 173 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
P+N++A P++++F VE++G+++P+ IV G+ L+QK+ L L
Sbjct: 237 GEPFNYDAVPDRFYFEVETSGSMEPDQIVQGGIRALQQKIGALLKGL 283
>gi|365992198|ref|XP_003672927.1| hypothetical protein NDAI_0L02000 [Naumovozyma dairenensis CBS 421]
gi|410730081|ref|XP_003671218.2| hypothetical protein NDAI_0G02000 [Naumovozyma dairenensis CBS 421]
gi|401780038|emb|CCD25975.2| hypothetical protein NDAI_0G02000 [Naumovozyma dairenensis CBS 421]
Length = 311
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 146/235 (62%), Gaps = 15/235 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID VQ+E N+TVL+DEFIA R+GLIPL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 44 LAIDSVQIETNTTVLADEFIAHRLGLIPLQSTDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V DL V + RN + + E + +LI KLRKGQEL+L
Sbjct: 103 AFGESESTTNVYAKDL----VIVSNLLGRNIGHPIIQDKENNGVLICKLRKGQELKLTCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-----PKPDEWPKSEYSELDETQHEA- 174
AKKG KEHAKW P A + FEYDP N ++HT + P+ EWP S+ E ++ +E
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDPQK-EWPNSKNCEYEDPPNEGE 217
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL---QTQLAHDRVFY 226
P++++AK ++ NVE+ G++ + +V+ G+ L+QK++++ TQ+ +++ Y
Sbjct: 218 PFDYKAKAETFYMNVETVGSISVDQVVVRGINTLQQKVASILLALTQMDQEKMQY 272
>gi|50555259|ref|XP_505038.1| YALI0F05566p [Yarrowia lipolytica]
gi|49650908|emb|CAG77845.1| YALI0F05566p [Yarrowia lipolytica CLIB122]
Length = 314
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 136/220 (61%), Gaps = 10/220 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++ N++VL+DEFI+ R+GLIPL S +V D + YSRDC C ++C +CSV LD
Sbjct: 37 LAIDLVEISTNTSVLADEFISHRLGLIPLDSQDVND-LEYSRDCVCDEYCDKCSVVLMLD 95
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
C D T + + DL P + D + G ILI KLRK Q LR++
Sbjct: 96 ATCTGDDTMDIYSRDLMVHTTPERPELGKPIYTDPAKKG----ILICKLRKNQSLRIKCI 151
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHE-AP 175
AKKG KEHAKW+P A + FEYDP N ++HT + +EWP S+ ++ +E E P
Sbjct: 152 AKKGIAKEHAKWSPCAAIGFEYDPWNKLKHTDYWYEENAEEEWPLSKNADWEEPPKENEP 211
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
+++ AKPNK++ NVE+ GAL +V+ G+ VL++KL+ +
Sbjct: 212 FDYNAKPNKFYINVEATGALTQYEVVLRGMQVLQKKLAEV 251
>gi|260950839|ref|XP_002619716.1| hypothetical protein CLUG_00875 [Clavispora lusitaniae ATCC 42720]
gi|238847288|gb|EEQ36752.1| hypothetical protein CLUG_00875 [Clavispora lusitaniae ATCC 42720]
Length = 307
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 138/229 (60%), Gaps = 12/229 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ N++VL+DE ++ R+GLIPL S E ++ + YSRDCTC +C CSV+ L
Sbjct: 48 LAIDLVEIDVNTSVLADELLSHRLGLIPLNS-EGIENLSYSRDCTCDQYCPNCSVKLELT 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D T +V ++DL S+ D + + LI KLRK QELRL
Sbjct: 107 AKCDSDSTMNVYSSDLAKFHN-----GSKLGDPVIRDPAHRGP-LICKLRKHQELRLTCI 160
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD----EWPKSEYSELDETQH-EAP 175
AKKG KEHAKW+P A + FEYDP N ++HT F D EWPKS E +E EAP
Sbjct: 161 AKKGIAKEHAKWSPCAAIGFEYDPWNKLKHTDFWYEDDAEAEWPKSANCEWEEAPDPEAP 220
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRV 224
+++ AKP ++ +VE+ G+L P +V+ G+ L+ KL+ + +L D V
Sbjct: 221 FDYNAKPANFYVDVETVGSLAPNEVVVRGIETLQLKLAGIAVELNKDTV 269
>gi|448514979|ref|XP_003867217.1| RNA polymerase II subunit B44 [Candida orthopsilosis Co 90-125]
gi|380351556|emb|CCG21779.1| RNA polymerase II subunit B44 [Candida orthopsilosis]
Length = 317
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 142/230 (61%), Gaps = 14/230 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ N++VL+DEF+A R+GLIPL S E ++ + YSRDCTC ++C +CSV L
Sbjct: 45 LAIDLVEIDVNTSVLADEFLAHRLGLIPLNS-ENIETLKYSRDCTCDNYCPKCSVTLELT 103
Query: 61 VKCVDDQTRHVTTADL-KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
KC D T +V +DL K + + AD +I KLRK QELRL
Sbjct: 104 AKCDTDSTMNVYASDLFKLANGSSLGNPVVRDQADRGS-------IICKLRKHQELRLTC 156
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQH-EA 174
AKKG KEHAKW+P A + FEYDP N ++HT + +EWPKS+ + +E E
Sbjct: 157 IAKKGIAKEHAKWSPCAAIGFEYDPWNKLKHTDYWYEVDASEEWPKSKNCDWEEQPDPEE 216
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRV 224
++++AKPN ++F+VE+ G L P ++V+ V L+ KL+++ +L +RV
Sbjct: 217 KFDYKAKPNDFYFDVETVGNLPPNDVVLQSVNTLQTKLASIVIELDKERV 266
>gi|392593588|gb|EIW82913.1| insert subdomain of RNA polymerase alpha subunit [Coniophora
puteana RWD-64-598 SS2]
Length = 418
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/238 (40%), Positives = 145/238 (60%), Gaps = 29/238 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++AN+TVL DEFIA R+G++PL S + + RDCTC + C CS+E LD
Sbjct: 47 VAIDMVEVQANTTVLPDEFIAHRLGMVPLVSTNCDEAMRLLRDCTCEEGCQFCSIELRLD 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVP--------------VTSRNRDADMNEYGETD---- 102
+ C D++T VT+ L+ VVP ++ R+ D + G+ D
Sbjct: 107 ISCHDNRTLEVTSNHLE-----VVPFPFQDTAESLSGDELSKRSEDFG-HPVGKNDPSAQ 160
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDE 158
+LI K+RKGQELR++ AKKG KEHAKW+P + V FEYDP N +RHT + + E
Sbjct: 161 PVLICKMRKGQELRIKCIAKKGIAKEHAKWSPCSAVAFEYDPYNKLRHTTYWFEADERAE 220
Query: 159 WPKSEYS-ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
WP SE + E D + + +++ AKP K++ VE+ G+L P+ +++ G+T L+ KL+NL
Sbjct: 221 WPVSENAKEEDAPREDEVFDYNAKPRKFYLEVETDGSLGPQEVMMKGLTELQTKLANL 278
>gi|45187753|ref|NP_983976.1| ADL120Cp [Ashbya gossypii ATCC 10895]
gi|44982514|gb|AAS51800.1| ADL120Cp [Ashbya gossypii ATCC 10895]
gi|374107190|gb|AEY96098.1| FADL120Cp [Ashbya gossypii FDAG1]
Length = 311
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 141/220 (64%), Gaps = 10/220 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+N++VL+DEFI+ R+GL+PL S ++ D+++Y RDC C D C CSV TL
Sbjct: 44 LAIDSVEIESNTSVLADEFISHRLGLVPLQSKDI-DQLVYCRDCFCEDHCDRCSVLLTLH 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V DL+ V + +N + + E + +LI KLRKGQELRL+
Sbjct: 103 AVGESESTTNVYAKDLQI----VSDLGGKNIGHPIIQDKEANGVLICKLRKGQELRLKCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF---PKPD-EWPKSEYSELDETQHE-AP 175
AKKG KEHAKW+P A + FEYDP N +RHT + P+ EWP S+ E ++ +E
Sbjct: 159 AKKGIAKEHAKWSPAAAIEFEYDPWNKLRHTDYWHEQDPEAEWPHSKNCEFEDPPNEDDQ 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
+++ AKPN ++ NVES G++ + +VI G+ L+ K++++
Sbjct: 219 FDYSAKPNTFYMNVESVGSIPSDQVVIRGIKTLQDKVADI 258
>gi|409080609|gb|EKM80969.1| hypothetical protein AGABI1DRAFT_112673 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197524|gb|EKV47451.1| hypothetical protein AGABI2DRAFT_192637 [Agaricus bisporus var.
bisporus H97]
Length = 380
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 140/232 (60%), Gaps = 17/232 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL DEFIA R+G IPL S + I Y+RDCTC+ C CS+ L
Sbjct: 47 VAIDMVEIEINTTVLPDEFIAHRLGQIPLLSSNCDEAIRYTRDCTCLAGCPFCSIMLNLH 106
Query: 61 VKCVDDQTRHVTTADL------KSTDARVVPVTSRNRDADM--NEYGETD----DILIVK 108
V C DD T +VT+ L + + + P ++ + + G+ D ILI K
Sbjct: 107 VSCNDDNTMNVTSNHLDIMPFPEDQEQQTDPGEELSKRGEYFGHPVGKNDPNASPILICK 166
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEY 164
+RKGQEL+ + AKKG KEHAKW+P + V FEYDP N +RHT + EWP E
Sbjct: 167 IRKGQELKAKCTAKKGIAKEHAKWSPCSAVAFEYDPHNKLRHTSYWFETDIKAEWPLGEN 226
Query: 165 SELDE-TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
++ +E + + P+++ AKP K++F VE+ G+L P+ +V+ G+ L+ KL+NL
Sbjct: 227 AKEEEPPRDDEPFDYNAKPTKFYFEVETDGSLSPQEVVMKGLAELQTKLANL 278
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 33/44 (75%)
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 272
++ P+++ AKP K++F VE+ G+L P+ +V+ G+ L+ KL+NL
Sbjct: 235 DDEPFDYNAKPTKFYFEVETDGSLSPQEVVMKGLAELQTKLANL 278
>gi|328868426|gb|EGG16804.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 296
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 159/281 (56%), Gaps = 32/281 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ + N++VL DEFIA R+GLIPLTS +V + Y+R+C+C + C+ECSVEF L+
Sbjct: 47 MAIDLVEFQTNTSVLCDEFIAHRLGLIPLTSHKV-ESFNYTRECSCTERCTECSVEFNLN 105
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD-ILIVKLRKGQELRLRA 119
VKC+D + VT++DL+S + V PV++ + N YG T I IV+LRKGQE++L+A
Sbjct: 106 VKCLD-RALEVTSSDLQSQNDNVFPVSASD-----NVYGNTSGAIPIVRLRKGQEVKLKA 159
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
AKKG GKEHAKW PT +++ P + F + + K E+
Sbjct: 160 IAKKGVGKEHAKWIPTCIATYQFQPKIVVNQNRFDELSDRQKDEWIS------------S 207
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNWEAKP 239
N + +N S + +++ M Q+ L + V E K
Sbjct: 208 CPTNVFKYNPNSMQQVTTDDLKCM----FCQECVKKSEALGKPDLVSV--------EQKQ 255
Query: 240 NKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHEL 280
+++ F VE++GAL+PE IV+ G+ ++K+KL +QTQ+ L
Sbjct: 256 DRFIFTVETSGALRPEEIVLAGIQIIKEKLIRIQTQIQKGL 296
>gi|398364469|ref|NP_012243.3| Rpb3p [Saccharomyces cerevisiae S288c]
gi|730603|sp|P16370.2|RPB3_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=B44.5; AltName:
Full=DNA-directed RNA polymerase II 45 kDa polypeptide
gi|14278326|pdb|1I3Q|C Chain C, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278337|pdb|1I50|C Chain C, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278367|pdb|1I6H|C Chain C, Rna Polymerase Ii Elongation Complex
gi|20150715|pdb|1K83|C Chain C, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749618|pdb|1NIK|C Chain C, Wild Type Rna Polymerase Ii
gi|30749739|pdb|1NT9|C Chain C, Complete 12-Subunit Rna Polymerase Ii
gi|34810555|pdb|1PQV|C Chain C, Rna Polymerase Ii-Tfiis Complex
gi|46015417|pdb|1R5U|C Chain C, Rna Polymerase Ii Tfiib Complex
gi|46015782|pdb|1SFO|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965913|pdb|1R9S|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965925|pdb|1R9T|C Chain C, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966109|pdb|1TWA|C Chain C, Rna Polymerase Ii Complexed With Atp
gi|56966123|pdb|1TWC|C Chain C, Rna Polymerase Ii Complexed With Gtp
gi|56966133|pdb|1TWF|C Chain C, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966143|pdb|1TWG|C Chain C, Rna Polymerase Ii Complexed With Ctp
gi|56966153|pdb|1TWH|C Chain C, Rna Polymerase Ii Complexed With 2'datp
gi|58177166|pdb|1WCM|C Chain C, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679446|pdb|1Y1W|C Chain C, Complete Rna Polymerase Ii Elongation Complex
gi|61679463|pdb|1Y77|C Chain C, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679504|pdb|1Y1V|C Chain C, Refined Rna Polymerase Ii-tfiis Complex
gi|61679517|pdb|1Y1Y|C Chain C, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754245|pdb|2B63|C Chain C, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590856|pdb|2B8K|C Chain C, 12-Subunit Rna Polymerase Ii
gi|122920063|pdb|2E2H|C Chain C, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920078|pdb|2E2I|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920093|pdb|2E2J|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921032|pdb|2NVQ|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921068|pdb|2NVT|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921084|pdb|2NVX|C Chain C, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921099|pdb|2NVY|C Chain C, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921111|pdb|2NVZ|C Chain C, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104676|pdb|2JA5|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104691|pdb|2JA6|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104712|pdb|2JA7|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104724|pdb|2JA7|O Chain O, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104736|pdb|2JA8|C Chain C, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387186|pdb|2YU9|C Chain C, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877775|pdb|2R7Z|C Chain C, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172229|pdb|2R92|C Chain C, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172242|pdb|2R93|C Chain C, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613464|pdb|2VUM|C Chain C, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368736|pdb|3CQZ|C Chain C, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983592|pdb|3FKI|C Chain C, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781918|pdb|3GTG|C Chain C, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781931|pdb|3GTJ|C Chain C, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781944|pdb|3GTK|C Chain C, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781957|pdb|3GTL|C Chain C, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781970|pdb|3GTM|C Chain C, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781984|pdb|3GTO|C Chain C, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781997|pdb|3GTP|C Chain C, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782010|pdb|3GTQ|C Chain C, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104513|pdb|3H3V|D Chain D, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839443|pdb|3HOU|C Chain C, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839458|pdb|3HOU|O Chain O, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839473|pdb|3HOV|C Chain C, Complete Rna Polymerase Ii Elongation Complex Ii
gi|266618767|pdb|3K1F|C Chain C, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914554|pdb|3K7A|C Chain C, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982477|pdb|3M3Y|C Chain C, Rna Polymerase Ii Elongation Complex C
gi|295982490|pdb|3M4O|C Chain C, Rna Polymerase Ii Elongation Complex B
gi|325053965|pdb|3PO2|C Chain C, Arrested Rna Polymerase Ii Elongation Complex
gi|325053980|pdb|3PO3|C Chain C, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634540|pdb|3QT1|C Chain C, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197458|pdb|3RZD|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197470|pdb|3RZO|C Chain C, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197482|pdb|3S14|C Chain C, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197494|pdb|3S15|C Chain C, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197506|pdb|3S16|C Chain C, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197518|pdb|3S17|C Chain C, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197530|pdb|3S1M|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197542|pdb|3S1N|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197554|pdb|3S1Q|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197566|pdb|3S1R|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197578|pdb|3S2D|C Chain C, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781199|pdb|3S2H|C Chain C, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|357380838|pdb|4A3C|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546292|pdb|4A3B|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546310|pdb|4A3D|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546327|pdb|4A3E|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546344|pdb|4A3F|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546361|pdb|4A3J|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546378|pdb|4A3K|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546394|pdb|4A3L|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546411|pdb|4A3M|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977881|pdb|4A3G|C Chain C, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977896|pdb|4A3I|C Chain C, Rna Polymerase Ii Binary Complex With Dna
gi|380764981|pdb|4A93|C Chain C, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145448|pdb|4BBR|C Chain C, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145461|pdb|4BBS|C Chain C, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|599978|emb|CAA86971.1| RNA polymerase II [Saccharomyces cerevisiae]
gi|151943136|gb|EDN61471.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|190406243|gb|EDV09510.1| RNA polymerase II 45 kDa subunit [Saccharomyces cerevisiae RM11-1a]
gi|207344276|gb|EDZ71474.1| YIL021Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272154|gb|EEU07153.1| Rpb3p [Saccharomyces cerevisiae JAY291]
gi|259147237|emb|CAY80490.1| Rpb3p [Saccharomyces cerevisiae EC1118]
gi|285812625|tpg|DAA08524.1| TPA: Rpb3p [Saccharomyces cerevisiae S288c]
gi|323333059|gb|EGA74460.1| Rpb3p [Saccharomyces cerevisiae AWRI796]
gi|323354620|gb|EGA86456.1| Rpb3p [Saccharomyces cerevisiae VL3]
gi|349578928|dbj|GAA24092.1| K7_Rpb3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765154|gb|EHN06668.1| Rpb3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298697|gb|EIW09793.1| Rpb3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 318
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 147/234 (62%), Gaps = 13/234 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+GLIPL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 44 LAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V + DL V + RN + + E + +LI KLRKGQEL+L
Sbjct: 103 AFGESESTTNVYSKDL----VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P A + FEYDP N ++HT + EWP+S+ E ++ +E P
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDP 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL---QTQLAHDRVFY 226
++++A+ + ++ NVES G++ + +V+ G+ L++K++++ TQ+ D+V +
Sbjct: 219 FDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQDKVNF 272
>gi|257471948|pdb|3I4M|C Chain C, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471963|pdb|3I4N|C Chain C, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
Length = 324
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 147/234 (62%), Gaps = 13/234 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+GLIPL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 50 LAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 108
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V + DL V + RN + + E + +LI KLRKGQEL+L
Sbjct: 109 AFGESESTTNVYSKDL----VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P A + FEYDP N ++HT + EWP+S+ E ++ +E P
Sbjct: 165 AKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDP 224
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL---QTQLAHDRVFY 226
++++A+ + ++ NVES G++ + +V+ G+ L++K++++ TQ+ D+V +
Sbjct: 225 FDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQDKVNF 278
>gi|254839488|pdb|3HOW|C Chain C, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839503|pdb|3HOX|C Chain C, Complete Rna Polymerase Ii Elongation Complex V
gi|254839518|pdb|3HOY|C Chain C, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839533|pdb|3HOZ|C Chain C, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
Length = 347
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 147/235 (62%), Gaps = 13/235 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+GLIPL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 73 LAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 131
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V + DL V + RN + + E + +LI KLRKGQEL+L
Sbjct: 132 AFGESESTTNVYSKDL----VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 187
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P A + FEYDP N ++HT + EWP+S+ E ++ +E P
Sbjct: 188 AKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDP 247
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL---QTQLAHDRVFYV 227
++++A+ + ++ NVES G++ + +V+ G+ L++K++++ TQ+ D+V +
Sbjct: 248 FDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQDKVNFA 302
>gi|254582264|ref|XP_002497117.1| ZYRO0D15796p [Zygosaccharomyces rouxii]
gi|238940009|emb|CAR28184.1| ZYRO0D15796p [Zygosaccharomyces rouxii]
Length = 308
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 144/234 (61%), Gaps = 13/234 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL+DEFIA R+GLIPL S ++ +++ Y RDC C D C +CSV TL
Sbjct: 44 LAIDSVEVETNTSVLADEFIAHRLGLIPLQSTDI-EQLEYCRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V DL V + RN + + E + +LI KLRKGQEL L+
Sbjct: 103 AIGESESTTNVYAKDL----VIVSNLMGRNLGHPIIQDKEGNGVLICKLRKGQELTLKCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P+A + FEYDP N ++HT + EWP S+ SE ++ +E P
Sbjct: 159 AKKGIAKEHAKWGPSAAIEFEYDPWNKLKHTEYWHEQDPAKEWPLSKNSEYEDPPNEGEP 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL---QTQLAHDRVFY 226
+++ A N ++ NVES G+L + +V+ G+ L++K++++ TQ+ D+V +
Sbjct: 219 FDYRATANTFYMNVESVGSLSTDQVVLRGIDTLQKKVASILLALTQMDQDKVNF 272
>gi|323308700|gb|EGA61941.1| Rpb3p [Saccharomyces cerevisiae FostersO]
Length = 318
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 147/234 (62%), Gaps = 13/234 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+GLIPL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 44 LAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V + DL V + RN + + E + +LI KLRKGQEL+L
Sbjct: 103 AFGESESTTNVYSKDL----VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P A + FEYDP N ++HT + EWP+S+ E ++ +E P
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDP 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL---QTQLAHDRVFY 226
++++A+ + ++ NVES G++ + +V+ G+ L++K++++ TQ+ D+V +
Sbjct: 219 FDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQDKVNF 272
>gi|190348772|gb|EDK41297.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 305
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 138/231 (59%), Gaps = 16/231 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ N++VL+DEF++ R+G+IPL S E +D + YSRDCTC +C CSV+ L
Sbjct: 46 LAIDLVEIDVNTSVLADEFLSHRLGMIPLNS-EGIDNLSYSRDCTCDQYCPNCSVKLELT 104
Query: 61 VKCVDDQTRHVTTADLKS--TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
KC D T V DL +++ R D ++ G LI KLRK QELRL
Sbjct: 105 AKCDSDSTMSVYATDLAKFHNGSKLGDPVVR----DHHQRGP----LICKLRKHQELRLT 156
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQH-E 173
AKKG KEHAKW+P A + FEYDP N ++HT + EWPKS E +E +
Sbjct: 157 CIAKKGIAKEHAKWSPCAAIGFEYDPWNKLKHTDYWYEIDADKEWPKSANCEWEEAPDPD 216
Query: 174 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRV 224
AP+++ AKP+ ++ +VE+ G L P +V+ G+ L+ KL+ + +L D +
Sbjct: 217 APFDYTAKPSTFYMDVETVGNLPPNEVVLKGIETLQLKLAGIAMELNKDSI 267
>gi|168026615|ref|XP_001765827.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683004|gb|EDQ69418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 324
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 102/254 (40%), Positives = 143/254 (56%), Gaps = 39/254 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E+NS+VL+DEF+A R+GLIP+ SD ++ L SRDC D C CS+EF
Sbjct: 48 LAIDLVEIESNSSVLNDEFLAHRLGLIPIVSDRAMEMRL-SRDCDACDGDGRCEYCSIEF 106
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMN--EYGETDDILIVKLRKGQEL 115
L VKC DQT VT+ DL S+D ++PV + R ADM E +T ILIVKLRKGQEL
Sbjct: 107 HLSVKCTGDQTLDVTSLDLVSSDPSIIPVDAAGRAADMGGFESNDTRGILIVKLRKGQEL 166
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----FPKPDEWPKSEYS---EL 167
+LRA A+KG GK+HAKW+P A V F+Y+P+ + L + EW S + EL
Sbjct: 167 KLRAIARKGIGKDHAKWSPAATVTFQYEPEIHINEALMETLTLEEKQEWIDSSPTKVFEL 226
Query: 168 DETQHEA------PYNWE-------------------AKPNKYFFNVESAGALKPENIVI 202
D + Y ++ +K + + F VES GA+K + +
Sbjct: 227 DPVSQQVVVVDPEAYTYDEEVLKKAEAMGKPGLVEIYSKEDSFIFTVESTGAIKASQMFL 286
Query: 203 MGVTVLKQKLSNLQ 216
+ +LK KL ++
Sbjct: 287 NAIEILKSKLDAVR 300
>gi|365760141|gb|EHN01882.1| Rpb3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401839643|gb|EJT42771.1| RPB3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 318
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 153/253 (60%), Gaps = 17/253 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+GLIPL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 44 LAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V + DL V + RN + + E + +LI KLRKGQEL+L
Sbjct: 103 AFGESESTTNVYSKDL----VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P A + FEYDP N ++HT + EWP+S+ E ++ +E P
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDP 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL---QTQLAHDRVFYVINEAP 232
++++A+ + ++ NVES G++ + +V+ G+ L++K++++ TQ+ D+V N A
Sbjct: 219 FDYKAEADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQDKV----NFAS 274
Query: 233 YNWEAKPNKYFFN 245
+ A PN N
Sbjct: 275 GDNNAAPNMLGTN 287
>gi|388854978|emb|CCF51481.1| related to RPB3-DNA-directed RNA polymerase II chain [Ustilago
hordei]
Length = 346
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 142/240 (59%), Gaps = 22/240 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++ N+TVL DEF+A R+G++PL S + ++ RDC C D C CSVE TL
Sbjct: 50 VAIDMVEIRNNTTVLPDEFLAHRLGMVPLLSMDCSKALVDHRDCACEDGCDRCSVELTLR 109
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEY---------------GETDDIL 105
+C VT+ DL +D + T + DA MNE G I+
Sbjct: 110 ARCTTRGNLEVTSRDLIRSDT-IENATIYDDDA-MNEPAAPKHPDFGRPVGHDGSIPPIM 167
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL----FPKPDEWPK 161
+VK+ KGQEL +R A+KGF KEHAKW+P + V FEYDP N++RHT F EWP+
Sbjct: 168 LVKMSKGQELDIRCIARKGFAKEHAKWSPCSAVGFEYDPHNALRHTTYWYEFDAKQEWPE 227
Query: 162 SEYSELDETQHE-APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+EL+E E AP+++ K +K++F+VE++G++ P IV G+ +L+ +++ + +L+
Sbjct: 228 GPNAELEEPPQEGAPFDYNKKVDKFYFDVEASGSMHPAEIVETGLGLLEYRVAQIVQELS 287
>gi|121715950|ref|XP_001275584.1| RNA polymerase II subunit 3 [Aspergillus clavatus NRRL 1]
gi|119403741|gb|EAW14158.1| RNA polymerase II subunit 3 [Aspergillus clavatus NRRL 1]
Length = 333
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 93/225 (41%), Positives = 131/225 (58%), Gaps = 9/225 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V++E N++VL DEF+A R+GLIPL S + Y+RDC C D C+ CSV TL
Sbjct: 50 MAIDLVEVERNTSVLPDEFLAHRLGLIPLNSKNCDQDVEYTRDCDCEDRCARCSVTLTLH 109
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D+ V DL T R D G LI KLR+GQEL++
Sbjct: 110 ARCTGDEIMPVYARDLVVTGERANEWVGTPVLTDPEGKGS----LICKLRRGQELKMTCI 165
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD----EWPKSEYSELDETQ-HEAP 175
AKKG KEHAKW PTA V FEYDP N++RH + + EWP S+ + + + P
Sbjct: 166 AKKGMAKEHAKWAPTAAVGFEYDPHNNLRHVDYWYEEDPIKEWPISQNAAWEHAAPPDQP 225
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
++++A PN ++ +VES G L P+ I+ G+ VL++KL+ + + L+
Sbjct: 226 FDYDATPNNFYIDVESIGNLDPDTIIQQGIVVLQRKLATVISSLS 270
>gi|358365833|dbj|GAA82455.1| RNA polymerase II subunit 3 [Aspergillus kawachii IFO 4308]
Length = 338
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 134/225 (59%), Gaps = 9/225 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V++E N++VL DEF+A R+GLIPL S + Y+RDC C D C+ CSV +L
Sbjct: 50 MAIDLVEVEKNTSVLPDEFLAHRLGLIPLVSKNCDQDVEYTRDCECEDHCARCSVTLSLH 109
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D V DL + R D E + LI KLR+GQEL++
Sbjct: 110 ARCTGDDIMRVYARDLVVSGERANEWVGNPVILDP----EGNGPLICKLRRGQELKMTCI 165
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDE-TQHEAP 175
AKKG KEHAKW PT+ + FEYDP N++RH + EWP S + ++ + P
Sbjct: 166 AKKGIAKEHAKWMPTSAIGFEYDPHNNLRHVDYWYEEDAAKEWPVSANAGWEQPVPPDQP 225
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
++++A+PN ++ +VES G L+P+ I+ G+TVL++KL+++ + L+
Sbjct: 226 FDYDAQPNSFYIDVESIGTLEPDMIIQQGITVLQRKLASVISSLS 270
>gi|448089925|ref|XP_004196939.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
gi|448094289|ref|XP_004197970.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
gi|359378361|emb|CCE84620.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
gi|359379392|emb|CCE83589.1| Piso0_004170 [Millerozyma farinosa CBS 7064]
Length = 308
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 141/231 (61%), Gaps = 16/231 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V ++ N++VL+DEF++ R+GLIPL S E ++ + YSRDCTC +C+ CSV+ L
Sbjct: 49 LAIDLVDIDVNTSVLADEFLSHRLGLIPLNS-EGIENLSYSRDCTCDQYCANCSVKLELT 107
Query: 61 VKCVDDQTRHVTTADLKS--TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
KC D T +V +DL +++ R D + G LI KLRK QELRL
Sbjct: 108 AKCDTDSTMNVYASDLAKFHNGSKLGDPVIR----DSQQRGP----LICKLRKHQELRLT 159
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQH-E 173
AKKG KEHAKW+P A + FEYDP N ++HT F +EWPKS + +E +
Sbjct: 160 CIAKKGIAKEHAKWSPCAAIGFEYDPWNKLKHTDFWYENEADEEWPKSANCDWEEAPDPD 219
Query: 174 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRV 224
AP++++AKP+ ++ +VE+ G+L P +V+ + L+ KL+ + +L D +
Sbjct: 220 APFDYKAKPSTFYVDVETVGSLPPNEVVLKSIETLQLKLAGISMELNKDTI 270
>gi|145231693|ref|XP_001399321.1| DNA-directed RNA polymerase II subunit RPB3 [Aspergillus niger CBS
513.88]
gi|134056224|emb|CAK37482.1| unnamed protein product [Aspergillus niger]
gi|350634315|gb|EHA22677.1| hypothetical protein ASPNIDRAFT_52135 [Aspergillus niger ATCC 1015]
Length = 338
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 90/225 (40%), Positives = 134/225 (59%), Gaps = 9/225 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V++E N++VL DEF+A R+GLIPL S + Y+RDC C D C+ CSV +L
Sbjct: 50 MAIDLVEVEKNTSVLPDEFLAHRLGLIPLISKNCDQDVEYTRDCECEDHCARCSVTLSLH 109
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D V DL + R D E + LI KLR+GQEL++
Sbjct: 110 ARCTGDDIMRVYARDLVVSGERANEWVGNPVILDP----EGNGPLICKLRRGQELKMTCI 165
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDE-TQHEAP 175
AKKG KEHAKW PT+ + FEYDP N++RH + EWP S + ++ + P
Sbjct: 166 AKKGIAKEHAKWMPTSAIGFEYDPHNNLRHVDYWYEEDPAKEWPVSANAGWEQPAPPDQP 225
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
++++A+PN ++ +VES G L+P+ I+ G+TVL++KL+++ + L+
Sbjct: 226 FDYDAQPNSFYIDVESIGTLEPDMIIQQGITVLQRKLASVISSLS 270
>gi|83769667|dbj|BAE59802.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391869849|gb|EIT79042.1| RNA polymerase [Aspergillus oryzae 3.042]
Length = 342
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 133/225 (59%), Gaps = 9/225 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL DEF+A R+GLIPL S + Y+RDC C D C+ CSV TL
Sbjct: 50 IAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQDVEYTRDCECEDHCARCSVTLTLH 109
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D V DL + R D E + LI KLR+GQEL++
Sbjct: 110 ARCTGDDIMRVYARDLVVSGERANEWVGNPVITDP----EGNGPLICKLRRGQELKMTCI 165
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQ-HEAP 175
AKKG KEHAKW PTA V FEYDP N+++H + EWP S + + + P
Sbjct: 166 AKKGIAKEHAKWMPTAAVGFEYDPHNNLKHVDYWYEEDPIKEWPVSHNAAWEHAAPPDQP 225
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
++++A+PN ++ +VES G L+P+ I+ G+TVL++KL+++ + L+
Sbjct: 226 FDYDAQPNNFYIDVESVGVLEPDMIIQQGITVLQRKLASVISALS 270
>gi|238496743|ref|XP_002379607.1| RNA polymerase II subunit 3 [Aspergillus flavus NRRL3357]
gi|317146984|ref|XP_001821804.2| DNA-directed RNA polymerase II subunit RPB3 [Aspergillus oryzae
RIB40]
gi|220694487|gb|EED50831.1| RNA polymerase II subunit 3 [Aspergillus flavus NRRL3357]
Length = 338
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 133/225 (59%), Gaps = 9/225 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL DEF+A R+GLIPL S + Y+RDC C D C+ CSV TL
Sbjct: 50 IAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQDVEYTRDCECEDHCARCSVTLTLH 109
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D V DL + R D E + LI KLR+GQEL++
Sbjct: 110 ARCTGDDIMRVYARDLVVSGERANEWVGNPVITDP----EGNGPLICKLRRGQELKMTCI 165
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQ-HEAP 175
AKKG KEHAKW PTA V FEYDP N+++H + EWP S + + + P
Sbjct: 166 AKKGIAKEHAKWMPTAAVGFEYDPHNNLKHVDYWYEEDPIKEWPVSHNAAWEHAAPPDQP 225
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
++++A+PN ++ +VES G L+P+ I+ G+TVL++KL+++ + L+
Sbjct: 226 FDYDAQPNNFYIDVESVGVLEPDMIIQQGITVLQRKLASVISALS 270
>gi|363752075|ref|XP_003646254.1| hypothetical protein Ecym_4382 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889889|gb|AET39437.1| hypothetical protein Ecym_4382 [Eremothecium cymbalariae
DBVPG#7215]
Length = 311
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 136/220 (61%), Gaps = 10/220 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL+DEFI+ R+GLIPL S ++ D+++Y RDC C D C CSV TL
Sbjct: 44 LAIDSVEIETNTSVLADEFISHRLGLIPLQSKDI-DQLVYCRDCYCEDHCDRCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V DL+ V + +N + + E + IL+ KLRKGQELRL+
Sbjct: 103 AVGESESTTNVYAKDLQI----VSDLGGKNIGHPIIQDKEANGILVCKLRKGQELRLKCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSEL-DETQHEAP 175
AKKG KEHAKW+P A + FEYDP N ++HT + EWP S+ E D +
Sbjct: 159 AKKGISKEHAKWSPAAAIEFEYDPWNKLKHTDYWFEQDATSEWPHSKNCEFEDPLNDDDV 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
+++ AKPN ++ NVES G++ + +VI G+ L+ K++++
Sbjct: 219 FDYSAKPNIFYINVESVGSITSDQVVIRGIKTLQDKVADI 258
>gi|384498629|gb|EIE89120.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Rhizopus delemar RA 99-880]
Length = 201
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 109/153 (71%), Gaps = 10/153 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+G++P+ S EV +++ Y+RDCTC +CSECSVE TL
Sbjct: 50 VAIDMVEIETNTTVLADEFIAHRLGMVPIDSREV-EKLRYTRDCTCSQYCSECSVELTLH 108
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC DD+T+ VTT DL ST+ PV D+ +L+VKLRKG EL+L+
Sbjct: 109 VKCTDDRTKDVTTRDLMSTNPSFTPVLQDKDDSG---------VLLVKLRKGHELKLKCI 159
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF 153
AKKG KEHAKW+P +GV FEYDP N +RHT +
Sbjct: 160 AKKGVAKEHAKWSPVSGVAFEYDPYNKLRHTSY 192
>gi|401625294|gb|EJS43310.1| rpb3p [Saccharomyces arboricola H-6]
Length = 318
Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 92/226 (40%), Positives = 141/226 (62%), Gaps = 10/226 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+GLIPL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 44 LAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V DL V + RN + + E + +LI KLRKGQEL+L
Sbjct: 103 AFGESESTTNVYGKDL----VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P A + FEYDP N ++HT + EWP+S+ E ++ +E P
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDAPNEGDP 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
++++A+ + ++ NVES G++ + +V+ G+ L++K++++ LA
Sbjct: 219 FDYKAEADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALAQ 264
>gi|403217190|emb|CCK71685.1| hypothetical protein KNAG_0H02700 [Kazachstania naganishii CBS
8797]
Length = 326
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/240 (38%), Positives = 143/240 (59%), Gaps = 13/240 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID VQ+E N+TVL+DEFIA R+GLIPL S ++ +R+ Y RDC C D C +CSV TL
Sbjct: 44 LAIDSVQVETNTTVLADEFIAHRLGLIPLQSMDI-ERLEYCRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V DL V + RN + + E + +LI KLRKGQEL++
Sbjct: 103 AVGESESTTNVYAKDL----TIVSNLMGRNIGHPIIQDKENNGVLICKLRKGQELKMTCI 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW PT+ + FEYDP N ++HT + EWP SE E ++ E P
Sbjct: 159 AKKGIAKEHAKWGPTSAIEFEYDPWNKLKHTSYWYEVDAAQEWPNSENCEYEDPPVEGEP 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL---QTQLAHDRVFYVINEAP 232
+++++K ++ NVE+ G++ + +V+ G+ L++K++++ TQ+ ++ + P
Sbjct: 219 FDYKSKAETFYMNVETIGSISVDQVVVRGIDTLQKKVASILLSLTQMEQEKTNFAQGNVP 278
>gi|71001920|ref|XP_755641.1| RNA polymerase II subunit 3 [Aspergillus fumigatus Af293]
gi|66853279|gb|EAL93603.1| RNA polymerase II subunit 3 [Aspergillus fumigatus Af293]
gi|159129698|gb|EDP54812.1| RNA polymerase II subunit 3 [Aspergillus fumigatus A1163]
Length = 392
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 132/225 (58%), Gaps = 9/225 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V++E N++VL DEF+A R+GLIPL S + Y+RDC C D C+ CSV TL
Sbjct: 106 MAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQDVEYTRDCDCEDHCARCSVTLTLH 165
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D+ V DL + R D G LI KLR+GQEL++
Sbjct: 166 ARCTGDEIMPVYARDLVVSGERANEWVGDPVITDPEGKGP----LICKLRRGQELKMTCV 221
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD----EWPKSEYSELDETQ-HEAP 175
AKKG KEHAKW PTA V FEYDP N++RH + + EWP S + + + P
Sbjct: 222 AKKGIAKEHAKWAPTAAVGFEYDPHNNLRHVDYWYEEDPIKEWPVSANAAWEHAAPPDQP 281
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
++++A+PN ++ +VES G L+P+ I+ G+ VL++KL+ + + L+
Sbjct: 282 FDYDAQPNNFYIDVESIGNLEPDMIIQQGIVVLQRKLATVISSLS 326
>gi|392569943|gb|EIW63116.1| hypothetical protein TRAVEDRAFT_17573 [Trametes versicolor
FP-101664 SS1]
Length = 454
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/248 (41%), Positives = 146/248 (58%), Gaps = 32/248 (12%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDV 61
AID V++E N+TVL DEFIA R+G+IPL S + + Y+RDCTC C C++E L+V
Sbjct: 83 AIDMVEIETNTTVLPDEFIAHRLGMIPLVSTNCDEAMRYTRDCTCEVRCQYCAIELMLNV 142
Query: 62 KCVDDQTRHVTTADLKSTDARVVPVTSR------NRDADMNE--------YGE------- 100
C + H T D+ S VVP TSR + D+D +E +G
Sbjct: 143 SC--HEGGH--TMDITSDMLEVVP-TSRPGFGGFDADSDGSEELAKRVESFGHPIGQGDP 197
Query: 101 -TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL----FPK 155
T ILI K+RKGQELR+R AKKG KEH+KW+P A V FEYDP N +RHT +
Sbjct: 198 STPPILICKIRKGQELRIRCIAKKGIAKEHSKWSPCAAVGFEYDPHNKLRHTSYWFEYDA 257
Query: 156 PDEWPKSEYSELDE-TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSN 214
EWP S+ ++ +E + + P+++ AKP K++ +VE+ G+L + +V+ G+ L+ KL+N
Sbjct: 258 RSEWPLSKNAKDEEPARDDLPFDYNAKPEKFYMDVETDGSLGAQEVVMKGLAELQTKLAN 317
Query: 215 LQTQLAHD 222
L L D
Sbjct: 318 LVLGLKGD 325
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 32/44 (72%)
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 272
++ P+++ AKP K++ +VE+ G+L + +V+ G+ L+ KL+NL
Sbjct: 275 DDLPFDYNAKPEKFYMDVETDGSLGAQEVVMKGLAELQTKLANL 318
>gi|71018933|ref|XP_759697.1| hypothetical protein UM03550.1 [Ustilago maydis 521]
gi|46099249|gb|EAK84482.1| hypothetical protein UM03550.1 [Ustilago maydis 521]
Length = 329
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 138/238 (57%), Gaps = 18/238 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++ N+TVL DE +A R+G++PL S + ++ RDC C D C CSVE TL
Sbjct: 50 VAIDMVEIRNNTTVLPDEMLAHRLGMVPLLSMDCAKALVDHRDCACEDGCDRCSVELTLR 109
Query: 61 VKCVDDQTRHVTTADLKSTD-----------ARVVPVTSRNRD--ADMNEYGETDDILIV 107
+C VT+ DL +D A P ++ D + G I++V
Sbjct: 110 ARCTTRGNLEVTSRDLIRSDTIENATIYDDDAMAEPAAPKHPDFGRPVGHDGSIAPIMLV 169
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL----FPKPDEWPKSE 163
K+ KGQEL +R A+KGF KEHAKW+P + V FEYDP N++RHT F EWP+
Sbjct: 170 KMSKGQELDIRCIARKGFAKEHAKWSPCSAVGFEYDPHNALRHTTYWYEFDAKQEWPEGP 229
Query: 164 YSELDETQHE-APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+E +E E AP+++ K +K++F+VE++G++ P IV G+ +L+ +++ + +L+
Sbjct: 230 NAECEEPPQEGAPFDYNKKASKFYFDVEASGSMHPAEIVETGLGLLEYRVAQIVQELS 287
>gi|146412808|ref|XP_001482375.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 305
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/231 (40%), Positives = 137/231 (59%), Gaps = 16/231 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ N++VL+DEF++ R+G+IPL S E +D + YSRDCTC +C C V+ L
Sbjct: 46 LAIDLVEIDVNTSVLADEFLSHRLGMIPLNS-EGIDNLSYSRDCTCDQYCPNCLVKLELT 104
Query: 61 VKCVDDQTRHVTTADLKS--TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
KC D T V DL +++ R D ++ G LI KLRK QELRL
Sbjct: 105 AKCDSDSTMSVYATDLAKFHNGSKLGDPVVR----DHHQRGP----LICKLRKHQELRLT 156
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQH-E 173
AKKG KEHAKW+P A + FEYDP N ++HT + EWPKS E +E +
Sbjct: 157 CIAKKGIAKEHAKWSPCAAIGFEYDPWNKLKHTDYWYEIDADKEWPKSANCEWEEAPDPD 216
Query: 174 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRV 224
AP+++ AKP+ ++ +VE+ G L P +V+ G+ L+ KL+ + +L D +
Sbjct: 217 APFDYTAKPSTFYMDVETVGNLPPNEVVLKGIETLQLKLAGIAMELNKDSI 267
>gi|119481479|ref|XP_001260768.1| RNA polymerase II subunit 3 [Neosartorya fischeri NRRL 181]
gi|119408922|gb|EAW18871.1| RNA polymerase II subunit 3 [Neosartorya fischeri NRRL 181]
Length = 336
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 130/225 (57%), Gaps = 9/225 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V++E N++VL DEF+A R+GLIPL S + Y+RDC C D C+ CSV TL
Sbjct: 50 MAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQDVEYTRDCECEDHCARCSVTLTLH 109
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D+ V DL + R D G LI KLR+GQEL++
Sbjct: 110 ARCTGDEIMPVYARDLVVSGERANEWVGDPVITDPEGKGP----LICKLRRGQELKMTCV 165
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQ-HEAP 175
AKKG KEHAKW PTA V FEYDP N++RH + EWP S + + + P
Sbjct: 166 AKKGIAKEHAKWAPTAAVGFEYDPHNNLRHVDYWYEEDPIKEWPVSANAAWEHAAPPDQP 225
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
++++A+PN ++ +VES G L P+ I+ G+ VL++KL+ + + L+
Sbjct: 226 FDYDAQPNNFYIDVESIGNLDPDMIIQQGIIVLQRKLATVISSLS 270
>gi|396463947|ref|XP_003836584.1| hypothetical protein LEMA_P041200.1 [Leptosphaeria maculans JN3]
gi|312213137|emb|CBX93219.1| hypothetical protein LEMA_P041200.1 [Leptosphaeria maculans JN3]
Length = 336
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 132/226 (58%), Gaps = 12/226 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++ N++VL+DEF+ R+GLIPL S + VD +LYSRDC C +CS CSV TL+
Sbjct: 48 LAIDVVEVLDNTSVLADEFVCHRLGLIPLCS-KGVDDLLYSRDCDCEGYCSNCSVVLTLN 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC ++ V DL R D + G IVKLR+GQ + +R
Sbjct: 107 AKCTGNEIMKVYARDLVVESMTPNDEVGRPVITDADGTGSC----IVKLRRGQAIHMRCI 162
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF---PKPD-EWPKSE-YSELD--ETQHE 173
AKKG KEHAKW P+A + FEYDP N + H + PD EWPK E LD +
Sbjct: 163 AKKGIAKEHAKWAPSAAIGFEYDPANKLHHLDYWHEEDPDKEWPKDEDRINLDGGPANPD 222
Query: 174 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
P+++ A P ++F++VE+ G L P+ IV G+TVL+ KL+ + +L
Sbjct: 223 EPFDYNAAPTRFFYDVETVGGLDPDQIVGKGITVLQHKLAGIIAEL 268
>gi|353251635|pdb|3J0K|C Chain C, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 268
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 141/226 (62%), Gaps = 10/226 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+GLIPL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 44 LAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V + DL V + RN + + E + +LI KLRKGQEL+L
Sbjct: 103 AFGESESTTNVYSKDL----VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P A + FEYDP N ++HT + EWP+S+ E ++ +E P
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDP 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
++++A+ + ++ NVES G++ + +V+ G+ L++K++++ L
Sbjct: 219 FDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQ 264
>gi|449442251|ref|XP_004138895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Cucumis sativus]
Length = 320
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/252 (40%), Positives = 140/252 (55%), Gaps = 37/252 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS+ + + +SRDC D C CSVEF
Sbjct: 48 IAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEF 106
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
L KC DQT VT+ DL S+D VVPV + A E +T I+IVKLR+GQELRL
Sbjct: 107 HLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRL 166
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDP-----DNSMRHTLFPKPDEWPKS---EYSELDE 169
RA A+KG GK+HAKW+P A V F Y+P ++ M + W +S ELD
Sbjct: 167 RAIARKGIGKDHAKWSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDT 226
Query: 170 TQHEA------PYNWE-------------------AKPNKYFFNVESAGALKPENIVIMG 204
H+ Y ++ A+ + + F VES GA+K +++
Sbjct: 227 VTHQVMVVDPEAYTYDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNA 286
Query: 205 VTVLKQKLSNLQ 216
+ +LKQKL ++
Sbjct: 287 IDILKQKLDAVR 298
>gi|281211628|gb|EFA85790.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 295
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 156/283 (55%), Gaps = 46/283 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
M ID V+ EAN++VL DEFIA R+GLIPLTS +V D+ Y+RDC+C + C CSVEF L+
Sbjct: 47 MCIDLVEFEANNSVLVDEFIAHRLGLIPLTSHKV-DQFNYTRDCSCAERCDNCSVEFKLN 105
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDIL-IVKLRKGQELRLRA 119
+C +D + VT+ DL S + V+PV S + G D ++ IVKL +GQE++LRA
Sbjct: 106 ARC-NDHSYSVTSLDLLSQNDHVIPVGSSD--------GRPDTVIPIVKLHRGQEVKLRA 156
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDP-----DNSMRHTLFPKPDEWPKSEYSELDETQHEA 174
AKKG GKEHAKW+P +++ P N M + +EW +S
Sbjct: 157 IAKKGVGKEHAKWSPACVATYQFQPKIVINQNRMDELTDRQKEEWVQS------------ 204
Query: 175 PYNWEAKPNKYFFNVESAGALKPEN-IVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPY 233
N Y FN + E+ + M K+K +L D V
Sbjct: 205 -----CPANVYQFNAHQRQQVTIEDQMRCMFCMECKKKADSLGKP---DLV--------- 247
Query: 234 NWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ E K +K+ FNVE+ G+LKPE +V+ + ++K+KL+++QTQL
Sbjct: 248 SIEQKTDKFIFNVETNGSLKPEEVVLSAIQIIKRKLTDIQTQL 290
>gi|449298899|gb|EMC94913.1| hypothetical protein BAUCODRAFT_123413 [Baudoinia compniacensis
UAMH 10762]
Length = 389
Score = 170 bits (431), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 142/247 (57%), Gaps = 28/247 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+N++VL DEF+A R+GLIPL++ +V D + Y+RDC C +FC CSV L+
Sbjct: 55 IAIDLVEIESNTSVLPDEFLAHRMGLIPLSTRDVED-MFYTRDCACDEFCDNCSVVLQLN 113
Query: 61 VKCVD-DQTRHVTTADLKSTDARVVPVTS-------RNRDADMNEYGE------------ 100
V + D V DL T P+T N A ++ + E
Sbjct: 114 VANRNLDHNLKVFARDLTVTRVDGTPITDPRSTAHLTNGAAGLHSHAEELPPRGFPILMD 173
Query: 101 --TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH-TLFPKPD 157
L+ LRKGQ+L+LR AKKG KEHAKW PTA + FEYDP N +RH TL+ + D
Sbjct: 174 PEQKGPLLCSLRKGQDLKLRCIAKKGIAKEHAKWAPTAAIGFEYDPHNKLRHTTLWHEED 233
Query: 158 ---EWPKSEYSELDETQHEAP-YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
EWP+S+ E +E E +++ A+P ++F N+E G + P+ +V G+ L+QKL+
Sbjct: 234 AKKEWPESKNREWEEPPQEGQNFDFVAEPEQFFLNLEGTGVMPPDGVVHAGIRTLQQKLA 293
Query: 214 NLQTQLA 220
+ QLA
Sbjct: 294 TVIQQLA 300
>gi|213405883|ref|XP_002173713.1| DNA-directed RNA polymerase II subunit RPB3 [Schizosaccharomyces
japonicus yFS275]
gi|212001760|gb|EEB07420.1| DNA-directed RNA polymerase II subunit RPB3 [Schizosaccharomyces
japonicus yFS275]
Length = 308
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 141/234 (60%), Gaps = 20/234 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD----RILYSRDCTCVDFCSECSVE 56
+AID V++ N++V+ DEF+A R+G+IPL S+ + + + Y+R+C C +C++CSVE
Sbjct: 43 VAIDLVEISVNTSVMPDEFLAHRLGMIPLNSNNIDEPPPVGLEYTRNCDCDQYCNKCSVE 102
Query: 57 FTLDVKCVDDQTRHVTTADL--KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQE 114
+L+ KC D T V DL S PV AD +G LI+KLRK QE
Sbjct: 103 LSLNAKCTGDGTMEVYARDLVVDSNSTLGQPVL-----ADARSHGP----LILKLRKEQE 153
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDET 170
+ LR AKKG KEHAKW+PTA V FEYDP N ++HT + +EWPKS+ ++ +E
Sbjct: 154 VSLRCIAKKGIAKEHAKWSPTAAVSFEYDPWNKLKHTDYWFETDADEEWPKSKNADWEEP 213
Query: 171 QHEA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDR 223
E +++ A+P K++ VE G++ P I++ G+ VL++KL+ L L ++
Sbjct: 214 PREGETFDYNAQPRKFYMEVEGVGSIPPNQIILQGIRVLQEKLAVLVRDLDEEQ 267
>gi|67540164|ref|XP_663856.1| hypothetical protein AN6252.2 [Aspergillus nidulans FGSC A4]
gi|40739446|gb|EAA58636.1| hypothetical protein AN6252.2 [Aspergillus nidulans FGSC A4]
gi|259479538|tpe|CBF69852.1| TPA: RNA polymerase II subunit 3 (AFU_orthologue; AFUA_2G13090)
[Aspergillus nidulans FGSC A4]
Length = 333
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 93/236 (39%), Positives = 136/236 (57%), Gaps = 10/236 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V++E NS+VL DE +A R+GLIPL S + Y+RDC C D C+ CSV +L
Sbjct: 50 MAIDIVEVEKNSSVLPDEMLAHRLGLIPLDSKNCDQDVEYTRDCECEDHCARCSVTLSLH 109
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D+ V DL T R D + G LI KLR+GQEL++
Sbjct: 110 ARCTSDEIMRVYARDLVITGERANEWVGNPVITDPDGNGP----LICKLRRGQELKMTCI 165
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQ-HEAP 175
AKKG KEH+KW PTA + FEYDP N++RH + EWP S + + + P
Sbjct: 166 AKKGIAKEHSKWAPTAAIGFEYDPHNNLRHVDYWYEEDPVKEWPVSHNAAWEPAAPADQP 225
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKL-SNLQTQLAHDRVFYVINE 230
++++A+PN ++ +VES G L+P+ I+ G+TVL++KL + +++ D V++E
Sbjct: 226 FDYDAQPNNFYIDVESIGNLEPDMIIQQGITVLQRKLAAAIKSLSGEDGTNGVVDE 281
>gi|410074507|ref|XP_003954836.1| hypothetical protein KAFR_0A02650 [Kazachstania africana CBS 2517]
gi|372461418|emb|CCF55701.1| hypothetical protein KAFR_0A02650 [Kazachstania africana CBS 2517]
Length = 312
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 146/234 (62%), Gaps = 13/234 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+GLIPL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 44 LAIDSVEVETNTTVLADEFIAHRLGLIPLQSTDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V DL V + RN + + E + +LI KLRKGQEL+L
Sbjct: 103 AVGESESTTNVYAKDL----TIVSNLLGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCI 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF---PKPD-EWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P A + FEYDP N ++HT + P+ EWP S+ E ++ +E P
Sbjct: 159 AKKGISKEHAKWCPAAAIEFEYDPWNKLKHTNYWYEQDPEKEWPNSKNCEYEDPPNENDP 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL---QTQLAHDRVFY 226
++++AK + ++ NVE+ G++ + +V+ GV L++K++++ Q+ ++V Y
Sbjct: 219 FDYKAKADTFYMNVETVGSISVDQVVVRGVDTLQKKVASILLALNQMDQEKVNY 272
>gi|357475219|ref|XP_003607895.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
gi|85719360|gb|ABC75365.1| RNA polymerase, dimerisation [Medicago truncatula]
gi|355508950|gb|AES90092.1| DNA-directed RNA polymerase II subunit RPB3-A [Medicago truncatula]
Length = 318
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 143/260 (55%), Gaps = 41/260 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS+ + + +SRDC D C CSVEF
Sbjct: 48 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEYCSVEF 106
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
L VKC+ DQT V++ DL S+D V PV DA + G I+IVKLR+GQELRL
Sbjct: 107 HLRVKCITDQTLDVSSKDLISSDHTVTPVDVPGGDASIESDGRG--IIIVKLRRGQELRL 164
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPD-----NSMRHTLFPKPDEWPKSE--------- 163
RA A+KG GK+HAKW+P A V F Y+PD + M + EW S
Sbjct: 165 RAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDP 224
Query: 164 ------------YSELDETQHEAPYNWE-------AKPNKYFFNVESAGALKPENIVIMG 204
YS DE +A + AK + + F VES GA+K +++
Sbjct: 225 VTQQVMVVDPEAYSYDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNS 284
Query: 205 VTVLKQKLSNLQTQLAHDRV 224
+ +LKQKL + +L+ D V
Sbjct: 285 IEILKQKLDAV--RLSEDTV 302
>gi|50290755|ref|XP_447810.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527121|emb|CAG60759.1| unnamed protein product [Candida glabrata]
Length = 312
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 93/242 (38%), Positives = 147/242 (60%), Gaps = 13/242 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEF+A R+GLIPL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 44 LAIDSVEVETNTTVLADEFLAHRLGLIPLQSTDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V DL V + RN + + E + +LI KLRKGQEL+L
Sbjct: 103 AVGESESTTNVYAKDL----LIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCI 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD----EWPKSEYSEL-DETQHEAP 175
AKKG KEHAKW P A + FEYDP N ++HT + + EWP+S+ E D + P
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDPWNKLQHTDYWYEEDIRKEWPQSKNCEYEDPPNDDEP 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ---TQLAHDRVFYVINEAP 232
++++AK + ++ NVE+ G++ + +V+ G+ L++K++++ Q+ ++V + +A
Sbjct: 219 FDYKAKADTFYMNVEAVGSIAVDQVVLRGIDTLQKKVASIMLALNQMDQEKVNFATGDAK 278
Query: 233 YN 234
N
Sbjct: 279 GN 280
>gi|366993697|ref|XP_003676613.1| hypothetical protein NCAS_0E01830 [Naumovozyma castellii CBS 4309]
gi|342302480|emb|CCC70253.1| hypothetical protein NCAS_0E01830 [Naumovozyma castellii CBS 4309]
Length = 318
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 94/237 (39%), Positives = 144/237 (60%), Gaps = 13/237 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID VQ+E N+TVL+DEFIA R+GLIPL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 44 LAIDSVQIETNTTVLADEFIAHRLGLIPLQSLDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V DL V + RN + + E + +LI KLRKGQEL++
Sbjct: 103 AFGESESTTNVYAKDL----VIVSNLLGRNIGHPIIQDREGNGVLICKLRKGQELKITCI 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEAP- 175
AKKG KEHAKW P A + FEYDP N ++HT + EWP S+ E ++ +E
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDATKEWPNSKNCEYEDPPNEGEL 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL---QTQLAHDRVFYVIN 229
++++AK ++ NVE+ G++ + +V+ GV L++K++++ TQ+ ++V + N
Sbjct: 219 FDYKAKAETFYMNVETVGSIPVDQVVVRGVDTLQKKVASILLALTQMDQEKVNFATN 275
>gi|255729262|ref|XP_002549556.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132625|gb|EER32182.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 327
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/235 (40%), Positives = 136/235 (57%), Gaps = 23/235 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
++ID V++E N++VL+DEF++ R+GLIPL S+ + D + YSRDCTC ++C++CSV L
Sbjct: 47 LSIDLVEIEKNTSVLADEFLSHRLGLIPLVSEGIKD-LTYSRDCTCDNYCTKCSVTLQLL 105
Query: 61 VKCVDDQTRHVTTADLKSTD------ARVVPVTSRNRDADMNEYGETDDILIVKLRKGQE 114
C + T +V +DL T V RNR +I KLRK QE
Sbjct: 106 ASCTAETTMNVYASDLLKTTHTGSKLGDPVFRDPRNRGP-----------IICKLRKDQE 154
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDET 170
L L AKKG KEHAKW+P A V FEYDP N ++HT + EWPKS + +E
Sbjct: 155 LALTCIAKKGIAKEHAKWSPCAAVGFEYDPWNKLKHTDYWYEVDAESEWPKSRNCDWEEA 214
Query: 171 QH-EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRV 224
EA ++++AKPN ++F+VE+ G L P +V+ + L+ KL L +L + +
Sbjct: 215 PDPEAKFDYKAKPNTFYFDVETVGNLPPNEVVVRAIETLQNKLGALTVELNSESI 269
>gi|261199520|ref|XP_002626161.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239594369|gb|EEQ76950.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239615533|gb|EEQ92520.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis ER-3]
gi|327354685|gb|EGE83542.1| RNA polymerase II subunit 3 [Ajellomyces dermatitidis ATCC 18188]
Length = 346
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 131/224 (58%), Gaps = 9/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+N++VL DEFIA R+GLIPL S + YSRDC C C+ C V +L
Sbjct: 51 VAIDVVEIESNTSVLPDEFIAHRLGLIPLNSKNCDADMYYSRDCDCEGGCARCVVTLSLQ 110
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C + V DL R D G LI KLR+GQE+++
Sbjct: 111 ARCTGEDIMKVYARDLVVVGDRANEWVGNPVITDAEGKGP----LICKLRRGQEIKMTCV 166
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELD-ETQHEAP 175
AKKG KEHAKW PTA V FEYDP N+++H + EWP S +E + TQ + P
Sbjct: 167 AKKGIAKEHAKWAPTAAVGFEYDPHNNLKHVDYWYEEDPIKEWPVSANAEWETPTQPDMP 226
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++++A+P+ ++ +VES G L+P+ IV G+TVL++KL+ + + L
Sbjct: 227 FDYDAQPSTFYLDVESIGNLEPDAIVQQGITVLQRKLAEIISAL 270
>gi|255555327|ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
Length = 318
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/260 (40%), Positives = 144/260 (55%), Gaps = 41/260 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS+ + + +SRDC D C CSVEF
Sbjct: 48 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCDYCSVEF 106
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
L KC+ DQT VT+ DL S+D VVPV D+ + E I+IVKLR+GQELRL
Sbjct: 107 HLRAKCITDQTLDVTSKDLYSSDHTVVPVDFS--DSSGYDSSEQRGIIIVKLRRGQELRL 164
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPD-----NSMRHTLFPKPDEWPKSE--------- 163
RA A+KG GK+HAKW+P A V F Y+PD + M + W +S
Sbjct: 165 RAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDP 224
Query: 164 ------------YSELDETQHEAP-------YNWEAKPNKYFFNVESAGALKPENIVIMG 204
Y+ +E +A N +AK + + F VES GA+K +V+
Sbjct: 225 NTQQVVVVDPEAYTYDEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNA 284
Query: 205 VTVLKQKLSNLQTQLAHDRV 224
+ +LKQKL + +L+ D V
Sbjct: 285 IEILKQKLDAV--RLSEDTV 302
>gi|449546952|gb|EMD37921.1| hypothetical protein CERSUDRAFT_50160 [Ceriporiopsis subvermispora
B]
Length = 283
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 133/228 (58%), Gaps = 30/228 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL DEFIA R+G++PL S + + Y+RDCTC C CSV +L+
Sbjct: 47 IAIDLVEIETNTTVLPDEFIAHRLGMVPLASKNCDEAMRYTRDCTCTSNCEYCSVTLSLN 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGE--------------TDD- 103
V C +D TT D+ S V+P + DA E GE DD
Sbjct: 107 VACGED----ATTMDITSNHLEVIPGGGQGGYWDAGDAEGGEELSKRPKNFGHPVGKDDP 162
Query: 104 ----ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PK 155
+L+ K+RKGQEL+L+ AKKG KEHAKW+P + V FEYDP N +RHT +
Sbjct: 163 NVPPVLLCKIRKGQELKLKCIAKKGTAKEHAKWSPCSAVAFEYDPHNKLRHTSYWFESDA 222
Query: 156 PDEWPKSEYS-ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVI 202
EWP SE + E ++ + P+++ A+PNK++ VE+ G+L PE +V+
Sbjct: 223 RAEWPLSENAKEEAPSRDDEPFDFNARPNKFYMEVETDGSLGPEEVVM 270
>gi|388581049|gb|EIM21360.1| DNA-directed RNA polymerase II subunit RPB3 [Wallemia sebi CBS
633.66]
Length = 316
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 137/234 (58%), Gaps = 15/234 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V +E NS+VL DEFIA R+G++PL S I Y+RDC C+D C +CSVE L+
Sbjct: 39 MAIDIVNIEENSSVLVDEFIAHRLGMVPLISTACDKLINYNRDCVCLDHCPKCSVELELN 98
Query: 61 VKCVDDQTRHVTTADLK-------STDARVV--PVT-SRNRDADMNEYGETD-DILIVKL 109
+KC +T VT+ L+ T ++ P+ N +N + E I + KL
Sbjct: 99 IKCTTPETVLVTSNHLQIKGQVANDTSGNLIDPPIGLPDNFGLPINYHQEGAYPITLCKL 158
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYS 165
R+GQELR+ AKKG KEHAKW PT+ V FEYDP N ++HT + + EWP S +
Sbjct: 159 RQGQELRINCIAKKGINKEHAKWGPTSAVAFEYDPYNKLKHTHYWFEQDERAEWPLSANA 218
Query: 166 ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+ ++P A+P ++F+VE+ GAL+P++++++ L+ KL+ + L
Sbjct: 219 TEEAPPDDSPIGLNAEPRTFYFDVEATGALEPKDMILLAFAELQNKLAGIVLAL 272
>gi|115384192|ref|XP_001208643.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114196335|gb|EAU38035.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 331
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/226 (39%), Positives = 129/226 (57%), Gaps = 20/226 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL DEF+A R+GLIPL S + Y+RDC C D C+ CSV L
Sbjct: 51 VAIDLVEVEKNTSVLPDEFLAHRLGLIPLNSKNCDQDLEYTRDCECEDHCARCSVTLQLH 110
Query: 61 VKCVDDQTRHVTTADLKSTDARV-----VPVTSRNRDADMNEYGETDDILIVKLRKGQEL 115
+C D V DL R PV + E LI KLR+GQEL
Sbjct: 111 ARCTGDDIMRVYARDLAVAGERANDWVGTPVITDP---------EGKGPLICKLRRGQEL 161
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQ-HEA 174
++ AKKG KEHAKW PTA + FEYDP N++RH D WP S+ + + +
Sbjct: 162 KMTCIAKKGIAKEHAKWAPTAAIGFEYDPHNNLRHV-----DYWPVSQNAAWEHAAPPDQ 216
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
P++++A+P ++ +VES G L P+ I+ G+ VL++KL+++ + L+
Sbjct: 217 PFDYDAQPANFYLDVESIGNLDPDMIIQQGIIVLQRKLASVISSLS 262
>gi|320583437|gb|EFW97650.1| DNA-directed RNA polymerase II subunit, putative [Ogataea
parapolymorpha DL-1]
Length = 311
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 137/224 (61%), Gaps = 10/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++ N++VL+DEF++ R+GL+PL S+++ D++ Y+RDCTC D C +CSV L
Sbjct: 43 LAIDLVEILVNTSVLADEFLSHRLGLVPLESEDI-DQLKYTRDCTCEDHCEKCSVTLELR 101
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
C D+T +V ++ L V P T N + E +L+ KL+K Q+L +R
Sbjct: 102 AHCDSDETMNVYSSHL----TIVSPNTGLNLGTPVVRDPERKGVLLCKLKKHQQLHVRCV 157
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEAP- 175
AKKG KEHAKW+P A + FEYDP N ++HT + +EWPKS E +E
Sbjct: 158 AKKGIAKEHAKWSPCAAIGFEYDPWNKLKHTDYWFEESVEEEWPKSANCEWEEPPVPGER 217
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+++ AKPN+++ N+E+ G LKP + G L++K++N+ +L
Sbjct: 218 FDYNAKPNRFYVNLETTGPLKPNEVFSKGCIELQKKIANIVFEL 261
>gi|254573314|ref|XP_002493766.1| RNA polymerase II third largest subunit B44, part of central core
[Komagataella pastoris GS115]
gi|238033565|emb|CAY71587.1| RNA polymerase II third largest subunit B44, part of central core
[Komagataella pastoris GS115]
gi|328354411|emb|CCA40808.1| DNA-directed RNA polymerase II subunit RPB3 .5 [Komagataella
pastoris CBS 7435]
Length = 304
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/228 (39%), Positives = 136/228 (59%), Gaps = 9/228 (3%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ N++VL+DEFI+ R+GLIPL S++V + + YSRDCTC D+C ECSV L
Sbjct: 43 LAIDLVEIKMNTSVLADEFISHRLGLIPLVSEDV-EEMKYSRDCTCEDYCDECSVVLELS 101
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + TT S+ +V + N + IL+ KLR QEL +R
Sbjct: 102 AR---HEGEEGTTDVYSSSLIKVSGPGNLNVGEPVRRDDYDQGILLCKLRNHQELNIRCI 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEAP- 175
AKKG KEHAKW+P + + FEYDP N ++HT F EWP S+Y+ +E
Sbjct: 159 AKKGIAKEHAKWSPCSAIAFEYDPHNKLKHTDFWFEVDAKKEWPDSKYATWEEPPKPGEV 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDR 223
++++AKPN+++ VE+ G+LK + G+ L++KL+N+ +L + R
Sbjct: 219 FDYKAKPNRFYMTVETTGSLKANQVFSRGIKTLQEKLANVLFELENSR 266
>gi|395332694|gb|EJF65072.1| RBP11-like subunits of RNA polymerase [Dichomitus squalens LYAD-421
SS1]
Length = 410
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 99/246 (40%), Positives = 139/246 (56%), Gaps = 40/246 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL DEFIA R+G+IPL S + + Y+RDCTC C C++E L+
Sbjct: 46 VAIDMVEIETNTTVLPDEFIAHRLGMIPLVSTMCDEAMRYTRDCTCEVRCQYCAIELQLN 105
Query: 61 VKCVD-DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD---------------- 103
V C + + T H+T+ L+ VVP N+ Y +TDD
Sbjct: 106 VACHEANTTMHITSNMLE-----VVPT---NKPGSYGSY-DTDDGGEELAKRVENFGHPI 156
Query: 104 ---------ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-- 152
ILI K+R GQELR+R AKKG KEHAKW+P + V FEYDP N +RHT
Sbjct: 157 GKDDPDVPPILICKIRMGQELRVRCIAKKGIAKEHAKWSPCSAVAFEYDPHNKLRHTSYW 216
Query: 153 --FPKPDEWPKSEYS-ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLK 209
+ EWP SE + E D + + P+++ AKP K++ VE+ G+L + +V G+ L+
Sbjct: 217 YEYDARAEWPLSENAKEEDPPRDDVPFDYNAKPTKFYMEVETDGSLGAQEVVHKGLQELQ 276
Query: 210 QKLSNL 215
KL+NL
Sbjct: 277 TKLANL 282
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHE 279
++ P+++ AKP K++ VE+ G+L + +V G+ L+ KL+NL L E
Sbjct: 239 DDVPFDYNAKPTKFYMEVETDGSLGAQEVVHKGLQELQTKLANLILGLKPE 289
>gi|255714803|ref|XP_002553683.1| KLTH0E04598p [Lachancea thermotolerans]
gi|238935065|emb|CAR23246.1| KLTH0E04598p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 137/224 (61%), Gaps = 10/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL+DEFI+ R+GLIPL S ++ D ++Y RDC C D C CSV TL
Sbjct: 44 LAIDSVEVETNTSVLADEFISHRLGLIPLQSSDIND-LIYCRDCYCEDHCDRCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V DL V + RN + + + + +LI KLRKGQEL+L+
Sbjct: 103 AVGESESTTNVYAKDL----VIVSNLMGRNIGHPIIQDKDGNGVLICKLRKGQELKLKCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHE-AP 175
AKKG KEHAKW+P A + FEYDP N ++HT + EWP+S+ E ++ +E
Sbjct: 159 AKKGISKEHAKWSPAAAIEFEYDPWNKLKHTDYWHETDAAAEWPQSKNCEYEDPPNEDEA 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+++ AKP ++ NVE+ G+L + +VI G+ L+ K++++ L
Sbjct: 219 FDYNAKPTTFYMNVETVGSLTVDQVVIRGMKTLQDKVADILFSL 262
>gi|367017650|ref|XP_003683323.1| hypothetical protein TDEL_0H02530 [Torulaspora delbrueckii]
gi|359750987|emb|CCE94112.1| hypothetical protein TDEL_0H02530 [Torulaspora delbrueckii]
Length = 311
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 141/234 (60%), Gaps = 13/234 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+GLIPL S ++ +++ Y RDC C D C +CSV TL
Sbjct: 44 LAIDSVEIETNTTVLADEFIAHRLGLIPLQSTDI-EQLEYCRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V DL V + RN + + E + +LI KLRKGQEL ++
Sbjct: 103 AIGESESTTNVYAKDL----VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELSMKCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSEL-DETQHEAP 175
AKKG KEHAKW P A + FEYDP N ++HT + EWP S+ SE D +
Sbjct: 159 AKKGISKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDISKEWPLSKNSEYEDPPNKDDA 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL---QTQLAHDRVFY 226
++++AK N ++ NVE+ G++ + +V+ G+ L++K++++ Q+ +RV +
Sbjct: 219 FDYKAKANTFYMNVETVGSIATDQVVLRGIDTLQKKVASILLALNQMDQERVNF 272
>gi|403157658|ref|XP_003307056.2| hypothetical protein PGTG_00006 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163504|gb|EFP74050.2| hypothetical protein PGTG_00006 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 365
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 93/243 (38%), Positives = 142/243 (58%), Gaps = 37/243 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL--YSRDCTCVDFCSECSVEFT 58
+AI V+ E N++VL DE IA R+GLIPL S+++ D+ L + RDCTC+ +C +CS+E
Sbjct: 57 IAIHSVEFEENTSVLPDEMIAHRLGLIPLISEDL-DKYLKNWQRDCTCLSYCDDCSIELV 115
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYG----------ETDDILIVK 108
L KC D+ + ++ + +T R A + G E +LI K
Sbjct: 116 LSTKCT-------LVGDVLAVNSHDLVITPREDGAHRGDVGKPYQFTMPGGEQPGVLITK 168
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW------PKS 162
LRKGQE+RL+ A KG G+EHAKW+P + + FEYDP N + HT D W PK+
Sbjct: 169 LRKGQEVRLKCRAIKGIGQEHAKWSPVSTIGFEYDPYNRLGHT-----DLWFEVGTDPKA 223
Query: 163 EYSELDETQHE------APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
E+ ++E P ++ +KP++++F+VESAG+LKP++IVI G+ L KL+++Q
Sbjct: 224 EWPLTKNAKYERPPLDDEPVDYTSKPSRFYFDVESAGSLKPDDIVIKGIESLIVKLASVQ 283
Query: 217 TQL 219
+
Sbjct: 284 QGI 286
>gi|339250374|ref|XP_003374172.1| DNA-directed RNA polymerase II subunit RPB3 [Trichinella spiralis]
gi|316969579|gb|EFV53647.1| DNA-directed RNA polymerase II subunit RPB3 [Trichinella spiralis]
Length = 213
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/149 (53%), Positives = 103/149 (69%), Gaps = 10/149 (6%)
Query: 20 IASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKST 79
+ R+GL+PLTSDE V R+ ++R+C C D CSEC+V+ TL+ +C D+ T V+TADLKS
Sbjct: 65 LVHRLGLLPLTSDETVSRMRFARECQCSDHCSECAVQLTLEKQCRDESTHVVSTADLKSQ 124
Query: 80 DARVVPV---------TSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 130
D RV+P+ T R AD N T I+I KL +GQEL + A+KG GKEHA
Sbjct: 125 DPRVIPLHQFKTDQKNTMHFRLADRNGKLSTK-IIIAKLCRGQELNVVCLARKGIGKEHA 183
Query: 131 KWNPTAGVCFEYDPDNSMRHTLFPKPDEW 159
KWNPTA V FEYDPDN++RHT +PKP+EW
Sbjct: 184 KWNPTASVAFEYDPDNALRHTTYPKPEEW 212
>gi|345565094|gb|EGX48049.1| hypothetical protein AOL_s00081g153 [Arthrobotrys oligospora ATCC
24927]
Length = 345
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 130/222 (58%), Gaps = 16/222 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++ NS+VL DE ++ R+GL+PL S + +++LY+RDC C +C CSV TL
Sbjct: 52 LAIDLVEVINNSSVLPDELLSHRLGLVPLESSNIDEKMLYTRDCDCDGYCERCSVVLTLV 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVV--PVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
KC D+ V DL + PV + D + G +I KLRKGQEL L+
Sbjct: 112 AKCTGDRNVTVYARDLAVAAGAQLGSPVIT-----DEAQKGS----IICKLRKGQELNLK 162
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDE-TQHE 173
AKKG KEHAKW P A V FEYDP N ++H + EWPKS + +E Q
Sbjct: 163 CIAKKGIAKEHAKWQPCAAVAFEYDPHNKLKHVDYWYETDAKAEWPKSANAGWEEPPQEN 222
Query: 174 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
P+++ A P K++ +VE+ G+L+P+ I+ G+ L++KL+ +
Sbjct: 223 EPFDYNAVPTKFYVDVETVGSLQPDEILRQGIKYLQEKLATV 264
>gi|388505946|gb|AFK41039.1| unknown [Medicago truncatula]
Length = 318
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/260 (40%), Positives = 142/260 (54%), Gaps = 41/260 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS+ + + +SRDC D C CSVEF
Sbjct: 48 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEYCSVEF 106
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
L VK + DQT V++ DL S+D V PV DA + G I+IVKLR+GQELRL
Sbjct: 107 HLRVKRITDQTLDVSSKDLISSDHTVTPVDVPGGDASIESDGRG--IIIVKLRRGQELRL 164
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPD-----NSMRHTLFPKPDEWPKSE--------- 163
RA A+KG GK+HAKW+P A V F Y+PD + M + EW S
Sbjct: 165 RAIARKGIGKDHAKWSPAATVTFMYEPDIHINEDLMESLTLEEKKEWVDSSPTRVFDIDP 224
Query: 164 ------------YSELDETQHEAPYNWE-------AKPNKYFFNVESAGALKPENIVIMG 204
YS DE +A + AK + + F VES GA+K +++
Sbjct: 225 VTQQVMVVDPEAYSYDDEVIKKAEAMGKPGLIEITAKQDSFIFTVESTGAVKASQLLLNS 284
Query: 205 VTVLKQKLSNLQTQLAHDRV 224
+ +LKQKL + +L+ D V
Sbjct: 285 IEILKQKLDAV--RLSEDTV 302
>gi|212533887|ref|XP_002147100.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
gi|210072464|gb|EEA26553.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
Length = 370
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 131/227 (57%), Gaps = 10/227 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL DEF+A R+GLIPL S + + Y+RDCTC +CS CSV TL
Sbjct: 68 VAIDIVEVEVNTSVLPDEFLAHRLGLIPLNSKHCDNDMEYNRDCTCESWCSRCSVRLTLH 127
Query: 61 VKCVD-DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+C D V + DL T R D G LI KL KGQEL+L
Sbjct: 128 ARCNQADDVMKVYSRDLVVTGDRANEWVGNPVITDPEGKGP----LIAKLIKGQELKLTC 183
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQ-HEA 174
A+KG KEHAKW+PT+ V FEYDP N++RH + EWP SE + + +
Sbjct: 184 IARKGIAKEHAKWSPTSAVGFEYDPHNNLRHLDYWYEEDPAKEWPISENGKWETPNPPDQ 243
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
P++++A+PN ++ +VES G L+P+ IV G+ L+ KL+ + L +
Sbjct: 244 PFDYDAQPNTFYVDVESIGNLEPDTIVQQGILTLQTKLATIIDTLTN 290
>gi|212533885|ref|XP_002147099.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
gi|210072463|gb|EEA26552.1| RNA polymerase II subunit 3 [Talaromyces marneffei ATCC 18224]
Length = 352
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 131/227 (57%), Gaps = 10/227 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL DEF+A R+GLIPL S + + Y+RDCTC +CS CSV TL
Sbjct: 50 VAIDIVEVEVNTSVLPDEFLAHRLGLIPLNSKHCDNDMEYNRDCTCESWCSRCSVRLTLH 109
Query: 61 VKCVD-DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+C D V + DL T R D G LI KL KGQEL+L
Sbjct: 110 ARCNQADDVMKVYSRDLVVTGDRANEWVGNPVITDPEGKGP----LIAKLIKGQELKLTC 165
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQ-HEA 174
A+KG KEHAKW+PT+ V FEYDP N++RH + EWP SE + + +
Sbjct: 166 IARKGIAKEHAKWSPTSAVGFEYDPHNNLRHLDYWYEEDPAKEWPISENGKWETPNPPDQ 225
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
P++++A+PN ++ +VES G L+P+ IV G+ L+ KL+ + L +
Sbjct: 226 PFDYDAQPNTFYVDVESIGNLEPDTIVQQGILTLQTKLATIIDTLTN 272
>gi|367000601|ref|XP_003685036.1| hypothetical protein TPHA_0C04510 [Tetrapisispora phaffii CBS 4417]
gi|357523333|emb|CCE62602.1| hypothetical protein TPHA_0C04510 [Tetrapisispora phaffii CBS 4417]
Length = 310
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 139/224 (62%), Gaps = 10/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++ +N+TVL+DEFIA R+GL+PL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 44 LAIDSVEVISNTTVLADEFIAHRLGLVPLQSADI-EQLEYSRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V + DL V + RN + + E + +LI KLRKGQEL+
Sbjct: 103 ALGESESTTNVYSKDL----VIVSDLLGRNIGHPIIQDKEGNGVLICKLRKGQELKFTCI 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEAP- 175
AKKG KEHAKW P A + FEYDP N ++HT + EWP+S+ E ++ +E
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTEYWYEQDAAKEWPQSKNCEYEDPPNEGSE 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++++AK + ++ NVE+ G + + +++ G+ +L++K++++ L
Sbjct: 219 FDYKAKADTFYMNVETIGTVTSDQVIVRGIDILQKKVASILLAL 262
>gi|1834323|dbj|BAA09316.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe]
Length = 296
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 139/234 (59%), Gaps = 20/234 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD----RILYSRDCTCVDFCSECSVE 56
+AID V++ N++V+ DEF+A R+G+IPL S + + + Y+R+C C +C +CSVE
Sbjct: 43 VAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVE 102
Query: 57 FTLDVKCVDDQTRHVTTADL--KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQE 114
L+ KC + T + DL S + P+ AD G LI KLRK QE
Sbjct: 103 LFLNAKCTGEGTMEIYARDLVVSSNSSLGHPIL-----ADPKSRGP----LICKLRKEQE 153
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDET 170
+ LR AKKG KEHAKW+PT+ V FEYDP N ++HT + EWPKS+ ++ +E
Sbjct: 154 ISLRCIAKKGIAKEHAKWSPTSAVAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEP 213
Query: 171 QHEA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDR 223
E P+N++ +P +++ +VES G++ P I++ G+ +L++KL+ L L ++
Sbjct: 214 PREGEPFNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDEEQ 267
>gi|19075824|ref|NP_588324.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe 972h-]
gi|13124820|sp|P37382.2|RPB3_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB3;
Short=RNA polymerase II subunit 3; Short=RNA polymerase
II subunit B3; AltName: Full=DNA-directed RNA polymerase
II 33 kDa polypeptide
gi|256599717|pdb|3H0G|C Chain C, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599729|pdb|3H0G|O Chain O, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|2465184|dbj|BAA22566.1| polymerase II third largest subunit (subunit 3)
[Schizosaccharomyces pombe]
gi|3790255|emb|CAA21444.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe]
Length = 297
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 89/234 (38%), Positives = 139/234 (59%), Gaps = 20/234 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD----RILYSRDCTCVDFCSECSVE 56
+AID V++ N++V+ DEF+A R+G+IPL S + + + Y+R+C C +C +CSVE
Sbjct: 43 VAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVE 102
Query: 57 FTLDVKCVDDQTRHVTTADL--KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQE 114
L+ KC + T + DL S + P+ AD G LI KLRK QE
Sbjct: 103 LFLNAKCTGEGTMEIYARDLVVSSNSSLGHPIL-----ADPKSRGP----LICKLRKEQE 153
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDET 170
+ LR AKKG KEHAKW+PT+ V FEYDP N ++HT + EWPKS+ ++ +E
Sbjct: 154 ISLRCIAKKGIAKEHAKWSPTSAVAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEP 213
Query: 171 QHEA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDR 223
E P+N++ +P +++ +VES G++ P I++ G+ +L++KL+ L L ++
Sbjct: 214 PREGEPFNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDEEQ 267
>gi|147838054|emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
Length = 318
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 146/262 (55%), Gaps = 45/262 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS+ + + +SRDC D C CSVEF
Sbjct: 48 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEF 106
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD--DILIVKLRKGQEL 115
L KC+ D+T VT+ DL S+D VVPV +D + Y D I+IVKLR+GQEL
Sbjct: 107 HLRAKCMTDETLDVTSKDLISSDHTVVPVDF----SDSSGYDSADKKGIIIVKLRRGQEL 162
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----DNSMRHTLFPKPDEWPKSEYS---EL 167
RLRA A+KG GK+HAKW+P A V F Y+P ++ M + W +S + ++
Sbjct: 163 RLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDI 222
Query: 168 DETQHEA------PYNWE-------------------AKPNKYFFNVESAGALKPENIVI 202
D + + Y ++ AK + + F VES GA+K +V+
Sbjct: 223 DASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVL 282
Query: 203 MGVTVLKQKLSNLQTQLAHDRV 224
+ VLKQKL + +L+ D V
Sbjct: 283 NAIDVLKQKLDAV--RLSEDTV 302
>gi|225428887|ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
vinifera]
Length = 318
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 104/262 (39%), Positives = 146/262 (55%), Gaps = 45/262 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS+ + + +SRDC D C CSVEF
Sbjct: 48 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEFCSVEF 106
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD--DILIVKLRKGQEL 115
L KC+ D+T VT+ DL S+D VVPV +D + Y D I+IVKLR+GQEL
Sbjct: 107 HLRAKCMTDETLDVTSKDLISSDHTVVPVDF----SDSSGYDSADKKGIIIVKLRRGQEL 162
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----DNSMRHTLFPKPDEWPKSEYS---EL 167
RLRA A+KG GK+HAKW+P A V F Y+P ++ M + W +S + ++
Sbjct: 163 RLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDI 222
Query: 168 DETQHEA------PYNWE-------------------AKPNKYFFNVESAGALKPENIVI 202
D + + Y ++ AK + + F VES GA+K +V+
Sbjct: 223 DASSQQVVVADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVL 282
Query: 203 MGVTVLKQKLSNLQTQLAHDRV 224
+ VLKQKL + +L+ D V
Sbjct: 283 NAIDVLKQKLDAV--RLSEDTV 302
>gi|409044983|gb|EKM54464.1| hypothetical protein PHACADRAFT_258319 [Phanerochaete carnosa
HHB-10118-sp]
Length = 399
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 140/233 (60%), Gaps = 14/233 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++++N++VL DEFI+ R+G+IPL S + + Y+R+CTC FC C+V L+
Sbjct: 45 VAIDIVEIDSNTSVLPDEFISHRLGMIPLVSTNCDEAMRYTRECTCESFCQFCAVVLQLN 104
Query: 61 VKC------VDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD----ILIVKLR 110
++C +D + H+ +L + S+ + G+ D +LI ++
Sbjct: 105 IRCETAGEHLDVTSNHLEFVNLSNNYDDPGEEISKRPENFGYPVGKNDPNVPPVLIARIG 164
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF---PKPDEWPKSEYS-E 166
KGQE+R R AKKG KEHAKW+P + V +EYDP N +RHT + P EWP SE + E
Sbjct: 165 KGQEIRARCIAKKGIAKEHAKWSPCSAVAYEYDPHNKLRHTSYWFESDPKEWPLSENAKE 224
Query: 167 LDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
D + + P+++ AK NK++ VE+ G++ P+++V+ G+ +L+ K++ L +
Sbjct: 225 EDPPREDEPFDYMAKANKFYMEVETDGSMTPKDVVLKGLGLLQTKIATLSLSI 277
>gi|385305361|gb|EIF49344.1| dna-directed rna polymerase ii 45 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 268
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 135/224 (60%), Gaps = 10/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V ++ N++VL+DEF+A R+GL+PL S+++ D++ Y+RDCTC D C +CSV L
Sbjct: 8 LAIDLVDIKRNTSVLADEFLAHRLGLVPLESEDI-DQLKYTRDCTCEDHCEKCSVTLQLK 66
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D+T +V ++ L A T N + + +LI KL++ QEL +
Sbjct: 67 ARCDSDETMNVYSSHLVVISAN----TGLNLGQPVIRDPQKKGVLICKLKRHQELNIVCI 122
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW+P + + FEYDP N +RHT + + EWPKS + +E
Sbjct: 123 AKKGIAKEHAKWSPCSAIGFEYDPWNKLRHTDYWYEEDEAKEWPKSANCDWEEPPVPGEK 182
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+++ KP +++ NVE+ G LKP + G T L++K++N+ +L
Sbjct: 183 FDYNKKPARFYMNVETTGVLKPNEVFSKGCTELQKKVANIVFEL 226
>gi|325096255|gb|EGC49565.1| DNA-directed RNA polymerase II [Ajellomyces capsulatus H88]
Length = 475
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 139/251 (55%), Gaps = 13/251 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+N++VL DEFI+ R+GLIPL S + YSRDC C C+ C V L
Sbjct: 51 VAIDVVEIESNTSVLPDEFISHRLGLIPLNSKNCDADMEYSRDCDCEGGCARCVVTLQLQ 110
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C + V DL R D G +I KLR+GQE+++
Sbjct: 111 ARCTGEDIMKVYARDLVIVGDRANEWVGNPVIMDAEGKGP----VICKLRRGQEIKMTCI 166
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD----EWPKSEYSELDET-QHEAP 175
AKKG KEHAKW PTA V FEYDP N+++H + + EWP S +E + + Q + P
Sbjct: 167 AKKGIAKEHAKWAPTAAVGFEYDPHNNLKHVDYWYEEDPIKEWPISANAEWETSAQPDMP 226
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH----DRVFYVINEA 231
++++A+P+ ++ +VES G L+P+ IV G+TVL++KL+ + + L DR +N
Sbjct: 227 FDYDAQPSTFYIDVESIGNLEPDAIVQQGITVLQRKLAEIISALTGAGDTDRNGATMNGI 286
Query: 232 PYNWEAKPNKY 242
+ P+ Y
Sbjct: 287 GEDGGRSPDAY 297
>gi|224105591|ref|XP_002313865.1| predicted protein [Populus trichocarpa]
gi|222850273|gb|EEE87820.1| predicted protein [Populus trichocarpa]
Length = 346
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/255 (41%), Positives = 143/255 (56%), Gaps = 40/255 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS+ + + +SRDC D C CSVEF
Sbjct: 48 IAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMG-MRFSRDCDACDGDGQCEYCSVEF 106
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVT-SRNRDA-DMNEYGETD-DILIVKLRKGQE 114
L KC+ DQT VT+ DL S+D V+PV S DA D ++ ET I+IVKLR+GQE
Sbjct: 107 HLRAKCITDQTLDVTSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVKLRRGQE 166
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----DNSMRHTLFPKPDEWPKSE------ 163
LRLRA A+KG GK+HAKW+P A V F Y+P ++ M + W +S
Sbjct: 167 LRLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEKLSWIESSPTKVFD 226
Query: 164 ---------------YSELDETQHEAP-------YNWEAKPNKYFFNVESAGALKPENIV 201
Y+ DE +A + AK + + F VES GA+K +V
Sbjct: 227 IDKVTQQVVVVDPEAYTYDDEVIKKAEAMGKRGLIDIRAKEDSFIFTVESTGAVKASQLV 286
Query: 202 IMGVTVLKQKLSNLQ 216
+ + +LKQKL ++
Sbjct: 287 LNAIEILKQKLDAVR 301
>gi|225557550|gb|EEH05836.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces capsulatus
G186AR]
Length = 475
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 130/224 (58%), Gaps = 9/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+N++VL DEFI+ R+GLIPL S + YSRDC C C+ C V L
Sbjct: 51 VAIDVVEIESNTSVLPDEFISHRLGLIPLNSKNCDADMEYSRDCDCEGGCARCVVTLQLQ 110
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C + V DL R D G +I KLR+GQE+++
Sbjct: 111 ARCTGEDIMKVYARDLVVVGDRANEWVGNPVIMDAEGKGP----VICKLRRGQEIKMTCI 166
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD----EWPKSEYSELD-ETQHEAP 175
AKKG KEHAKW PTA V FEYDP N+++H + + EWP S +E + Q + P
Sbjct: 167 AKKGIAKEHAKWAPTAAVGFEYDPHNNLKHVDYWYEEDPIKEWPISANAEWETPAQPDMP 226
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++++A+P+ ++ +VES G L+P+ IV G+TVL++KL+ + + L
Sbjct: 227 FDYDAQPSTFYIDVESIGNLEPDAIVQQGITVLQRKLAEIISAL 270
>gi|297832026|ref|XP_002883895.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
gi|297329735|gb|EFH60154.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
Length = 319
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 135/252 (53%), Gaps = 38/252 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS+ + + +SRDC D C CSVEF
Sbjct: 48 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEF 106
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
L KCV DQT VT+ DL S D V PV D+ ++ E I+IVKLR+GQEL+L
Sbjct: 107 RLSAKCVTDQTLDVTSRDLYSADPTVTPV-DFTIDSSASDSSEQKGIIIVKLRRGQELKL 165
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQ------ 171
RA A+KG GK+HAKW+P A V F Y+PD + + + K + E T+
Sbjct: 166 RAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGIDP 225
Query: 172 ----------------HEAPYNWEA-----------KPNKYFFNVESAGALKPENIVIMG 204
E EA K + + F VES GA+K +V+
Sbjct: 226 VTRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKDDSFIFTVESTGAVKASQLVLNA 285
Query: 205 VTVLKQKLSNLQ 216
+ +LKQKL ++
Sbjct: 286 IDILKQKLDAVR 297
>gi|444324054|ref|XP_004182667.1| hypothetical protein TBLA_0J01520 [Tetrapisispora blattae CBS 6284]
gi|387515715|emb|CCH63148.1| hypothetical protein TBLA_0J01520 [Tetrapisispora blattae CBS 6284]
Length = 335
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 136/226 (60%), Gaps = 10/226 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFI+ R+GLIPL S ++ D++ Y RDC C D C +CSV TL
Sbjct: 44 LAIDSVEVEMNTTVLADEFISHRLGLIPLQSADI-DQLEYCRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V DL V + RN + + E + +LI KLRKGQEL++
Sbjct: 103 AVGESESTTNVYAKDL----VIVSNLLGRNIGHPIIQDKEGNGVLICKLRKGQELKMTCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD----EWPKSEYSELDETQHEAP- 175
AKKG KEHAKW TA + +EYDP N ++HT + + EWP S+ + ++ E
Sbjct: 159 AKKGIAKEHAKWGATAAIEYEYDPWNKLKHTDYWYENDPLKEWPHSKNCQYEDPPTEGEL 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
++++AK N ++ NVE+ G++ + ++I G+ L++K + + L+
Sbjct: 219 FDYKAKANTFYMNVEAVGSITTDQVIIRGIDTLQKKTAGILLALSQ 264
>gi|154274952|ref|XP_001538327.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414767|gb|EDN10129.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 576
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 141/254 (55%), Gaps = 19/254 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+N++VL DEFI+ R+GLIPL S + YSRDC C C+ C V L
Sbjct: 74 VAIDVVEIESNTSVLPDEFISHRLGLIPLNSKNCDADMEYSRDCDCEGGCARCVVTLQLQ 133
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEY---GETDDILIVKLRKGQELRL 117
+C + V DL V V R + N E +I KLR+GQE+++
Sbjct: 134 ARCTGEDIMKVYARDL-------VIVGDRANEWVGNPVIMDAEGKGPVICKLRRGQEIKM 186
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF---PKP-DEWPKSEYSELD-ETQH 172
AKKG KEHAKW PTA V FEYDP N+++H + P EWP S +E + Q
Sbjct: 187 TCIAKKGIAKEHAKWAPTAAVGFEYDPHNNLKHVDYWYEEDPIKEWPISANAEWETPAQP 246
Query: 173 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH----DRVFYVI 228
+ P++++A+P+ ++ +VES G L+P+ IV G+TVL++KL+ + + L DR +
Sbjct: 247 DMPFDYDAQPSTFYIDVESIGNLEPDAIVQQGITVLQRKLAEIISALTGAGDTDRNGATM 306
Query: 229 NEAPYNWEAKPNKY 242
N + P+ Y
Sbjct: 307 NGIGEDGGRSPDAY 320
>gi|295662885|ref|XP_002791996.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226279648|gb|EEH35214.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 352
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/224 (38%), Positives = 130/224 (58%), Gaps = 9/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+N++VL DEF+A R+GLIPL S + YSRDC C C+ C V +L+
Sbjct: 52 VAIDVVEIESNTSVLPDEFVAHRLGLIPLNSKNCDADMDYSRDCDCEGGCARCIVMLSLN 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C + V DL R D G +I KL +GQEL++
Sbjct: 112 VRCTGEDVMKVYARDLIIVGDRANEWVGSPVITDAEGKGP----VICKLSRGQELKMTCI 167
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELD-ETQHEAP 175
AKKG KEH+KW PTA V FEYDP N+++H + EWP S +E + Q + P
Sbjct: 168 AKKGIAKEHSKWAPTAAVGFEYDPHNNLKHVDYWYEEDPAKEWPISPNAEWETAAQPDMP 227
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++++ +P+ ++ +VES G L+P+ IV G+TVL++KL+ + + L
Sbjct: 228 FDYDVQPSTFYIDVESIGNLEPDAIVQQGITVLQRKLAEIISAL 271
>gi|425774142|gb|EKV12459.1| RNA polymerase II subunit 3 [Penicillium digitatum PHI26]
gi|425778395|gb|EKV16523.1| RNA polymerase II subunit 3 [Penicillium digitatum Pd1]
Length = 335
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 20/223 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A+D +++E+N++VL DEF+A R+G+IPL S + Y+RDC C D C CSV +L
Sbjct: 50 LALDLIEIESNTSVLPDEFLAHRLGMIPLNSYNCDQDLDYTRDCDCEDHCVRCSVTLSLH 109
Query: 61 VKCVDDQTRHVTTADLKSTDARVV-----PVTSRNRDADMNEYGETDDILIVKLRKGQEL 115
+C V DL R+ PVT+ E LI KLRKGQE+
Sbjct: 110 ARC-GSGIMSVYARDLIVVGERINDKIGDPVTTDP---------ENKGPLICKLRKGQEI 159
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQ 171
++ AKKG KEHAKW PTA V FEYDP+N++RH + EWP SE + +
Sbjct: 160 KMTCLAKKGTAKEHAKWAPTAAVGFEYDPNNNLRHVDYWYEQDAAKEWPISENAAWEPAA 219
Query: 172 H-EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
+ + P++++A+PN ++F+VES G L+P+ I+ G+ L++KL+
Sbjct: 220 NPDQPFDYDAEPNCFYFDVESIGNLEPDMIIQQGIVSLQRKLA 262
>gi|356521566|ref|XP_003529425.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Glycine max]
Length = 319
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/263 (39%), Positives = 145/263 (55%), Gaps = 47/263 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS+ + + +SRDC D C CSVEF
Sbjct: 49 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEF 107
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRN---RDADMNEYGETDDILIVKLRKGQE 114
L VKC+ DQT VT+ DL S+D V PV + D+D N I+IVKLR+GQE
Sbjct: 108 HLRVKCMTDQTLDVTSKDLYSSDPTVSPVDFSDPSATDSDNNR-----GIIIVKLRRGQE 162
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----DNSMRHTLFPKPDEWPKSEYS---E 166
L+LRA A+KG GK+HAKW+P A V F Y+P ++ M + EW S + E
Sbjct: 163 LKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTRVFE 222
Query: 167 LDETQHEA------PYNWE-------------------AKPNKYFFNVESAGALKPENIV 201
+D + Y ++ A+ + + F VES GA+K +V
Sbjct: 223 IDPVTQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKASQLV 282
Query: 202 IMGVTVLKQKLSNLQTQLAHDRV 224
+ + +LKQKL + +L+ D V
Sbjct: 283 LNAIEILKQKLDAV--RLSEDTV 303
>gi|327303580|ref|XP_003236482.1| RNA polymerase II subunit 3 [Trichophyton rubrum CBS 118892]
gi|326461824|gb|EGD87277.1| RNA polymerase II subunit 3 [Trichophyton rubrum CBS 118892]
Length = 351
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 126/224 (56%), Gaps = 9/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL DEFI+ R+GLIPL S +LYSRDC C C+ C + +L
Sbjct: 51 VAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNCDTDMLYSRDCDCEAGCARCVINLSLH 110
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC ++ V DL R D G +I KLR+GQE++
Sbjct: 111 AKCTTEEIMKVYARDLVVVGDRANEWVGNPVVTDPEGKGP----IICKLRRGQEVKFNCI 166
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQ-HEAP 175
KKG KEHAKW PTA V FEYDP N++RH + EWP S + + Q + P
Sbjct: 167 VKKGIAKEHAKWAPTAAVGFEYDPHNNLRHVDYWFEEDPVKEWPLSANAGWETAQPKDLP 226
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+N++A PN ++ ++ES G L+P+ +V G+ ++++KL+ + + L
Sbjct: 227 FNYDATPNTFYIDIESIGNLEPDAVVQQGIIMMQRKLAEIISGL 270
>gi|302654573|ref|XP_003019090.1| hypothetical protein TRV_06869 [Trichophyton verrucosum HKI 0517]
gi|291182788|gb|EFE38445.1| hypothetical protein TRV_06869 [Trichophyton verrucosum HKI 0517]
Length = 351
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 126/224 (56%), Gaps = 9/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL DEFI+ R+GLIPL S +LYSRDC C C+ C + +L
Sbjct: 51 VAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNCDTDMLYSRDCDCEAGCARCVINLSLH 110
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC ++ V DL R D G +I KLR+GQE++
Sbjct: 111 AKCTTEEIMKVYARDLVVVGDRANEWVGNPVVTDPEGKGP----IICKLRRGQEVKFNCI 166
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQ-HEAP 175
KKG KEHAKW PTA V FEYDP N++RH + EWP S + + Q + P
Sbjct: 167 VKKGIAKEHAKWAPTAAVGFEYDPHNNLRHVDYWFEEDPVKEWPLSANAGWETAQPKDLP 226
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+N++A PN ++ ++ES G L+P+ +V G+ ++++KL+ + + L
Sbjct: 227 FNYDATPNTFYIDIESIGNLEPDAVVQQGIIMMQRKLAEIISGL 270
>gi|302509162|ref|XP_003016541.1| hypothetical protein ARB_04830 [Arthroderma benhamiae CBS 112371]
gi|291180111|gb|EFE35896.1| hypothetical protein ARB_04830 [Arthroderma benhamiae CBS 112371]
Length = 361
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 126/224 (56%), Gaps = 9/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL DEFI+ R+GLIPL S +LYSRDC C C+ C + +L
Sbjct: 61 VAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNCDTDMLYSRDCDCEAGCARCVINLSLH 120
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC ++ V DL R D G +I KLR+GQE++
Sbjct: 121 AKCTTEEIMKVYARDLVVVGDRANEWVGNPVVTDPEGKGP----IICKLRRGQEVKFNCI 176
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQ-HEAP 175
KKG KEHAKW PTA V FEYDP N++RH + EWP S + + Q + P
Sbjct: 177 VKKGIAKEHAKWAPTAAVGFEYDPHNNLRHVDYWFEEDPVKEWPLSANAGWETAQPKDLP 236
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+N++A PN ++ ++ES G L+P+ +V G+ ++++KL+ + + L
Sbjct: 237 FNYDATPNTFYIDIESIGNLEPDAVVQQGIIMMQRKLAEIISGL 280
>gi|255932027|ref|XP_002557570.1| Pc12g07350 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582189|emb|CAP80362.1| Pc12g07350 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 335
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 20/223 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A+D +++E+N++VL DEF+A R+G+IPL S + Y+RDC C D C CSV +L
Sbjct: 50 LALDLIEIESNTSVLPDEFLAHRLGMIPLNSYNCDQDLDYTRDCDCEDHCVRCSVTLSLH 109
Query: 61 VKCVDDQTRHVTTADLKSTDARVV-----PVTSRNRDADMNEYGETDDILIVKLRKGQEL 115
+C V DL R+ PVT+ E LI KLRKGQE+
Sbjct: 110 ARC-GSGIMSVYARDLIVVGERINDKIGDPVTTDP---------ENKGPLICKLRKGQEV 159
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQ 171
++ AKKG KEHAKW PTA V FEYDP+N++RH + EWP SE + +
Sbjct: 160 KMTCLAKKGTAKEHAKWAPTAAVGFEYDPNNNLRHVDYWYEQDAAKEWPVSENAAWEPAA 219
Query: 172 H-EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
+ + P++++A+PN ++F+VES G L+P+ I+ G+ L++KL+
Sbjct: 220 NPDQPFDYDAEPNCFYFDVESIGNLEPDMIIQQGIVSLQRKLA 262
>gi|1834322|dbj|BAA09315.1| RNA polymerase II subunit 3 [Schizosaccharomyces pombe]
Length = 296
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 88/234 (37%), Positives = 138/234 (58%), Gaps = 20/234 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD----RILYSRDCTCVDFCSECSVE 56
+AID V++ N++V+ DEF+A R+ +IPL S + + + Y+R+C C +C +CSVE
Sbjct: 43 VAIDLVEINVNTSVMPDEFLAHRLDMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVE 102
Query: 57 FTLDVKCVDDQTRHVTTADL--KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQE 114
L+ KC + T + DL S + P+ AD G LI KLRK QE
Sbjct: 103 LFLNAKCTGEGTMEIYARDLVVSSNSSLGHPIL-----ADPKSRGP----LICKLRKEQE 153
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDET 170
+ LR AKKG KEHAKW+PT+ V FEYDP N ++HT + EWPKS+ ++ +E
Sbjct: 154 ISLRCIAKKGIAKEHAKWSPTSAVAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEP 213
Query: 171 QHEA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDR 223
E P+N++ +P +++ +VES G++ P I++ G+ +L++KL+ L L ++
Sbjct: 214 PREGEPFNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDEEQ 267
>gi|356576253|ref|XP_003556247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Glycine max]
Length = 320
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 104/266 (39%), Positives = 145/266 (54%), Gaps = 52/266 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS+ + + +SRDC D C CSVEF
Sbjct: 49 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEF 107
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD------ILIVKLRK 111
L VKC+ DQT VT+ DL S+D V PV D ++ TD I+IVKLR+
Sbjct: 108 HLRVKCMTDQTLDVTSKDLYSSDPTVSPV-------DFSDPSATDSPDNNRGIIIVKLRR 160
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----DNSMRHTLFPKPDEWPKSEYS- 165
GQEL+LRA A+KG GK+HAKW+P A V F Y+P ++ M + EW S +
Sbjct: 161 GQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEIHINEDLMETLTLEEKREWVDSSPTR 220
Query: 166 --ELDETQHEA------PYNWE-------------------AKPNKYFFNVESAGALKPE 198
E+D + Y ++ A+ + + F VES GA+K
Sbjct: 221 VFEIDPVTQQVMVVDAEAYTYDDEVLKKAEAMGKPGLVEIIARQDSFIFTVESTGAVKAS 280
Query: 199 NIVIMGVTVLKQKLSNLQTQLAHDRV 224
+V+ + +LKQKL + +L+ D V
Sbjct: 281 QLVLNAIEILKQKLDAV--RLSEDTV 304
>gi|15226523|ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana]
gi|11134646|sp|Q39211.1|RPB3A_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB3-A;
Short=RNA polymerase II subunit 3-A; Short=RNA
polymerase II subunit B3-A; AltName: Full=DNA-directed
RNA polymerase II 36 kDa polypeptide A
gi|514318|gb|AAB03741.1| RNA polymerase II third largest subunit [Arabidopsis thaliana]
gi|4544370|gb|AAD22281.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|17381018|gb|AAL36321.1| putative DNA-directed RNA polymerase II third largest subunit
[Arabidopsis thaliana]
gi|20465883|gb|AAM20046.1| putative DNA-directed RNA polymerase II [Arabidopsis thaliana]
gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
thaliana]
Length = 319
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 136/252 (53%), Gaps = 38/252 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS+ + + +SRDC D C CSVEF
Sbjct: 48 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEF 106
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
L KCV DQT VT+ DL S D V PV D+ +++ E I+IVKLR+GQEL+L
Sbjct: 107 RLSSKCVTDQTLDVTSRDLYSADPTVTPV-DFTIDSSVSDSSEHKGIIIVKLRRGQELKL 165
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQ------ 171
RA A+KG GK+HAKW+P A V F Y+PD + + + K + E T+
Sbjct: 166 RAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDP 225
Query: 172 ----------------HEAPYNWEA-----------KPNKYFFNVESAGALKPENIVIMG 204
E EA K + + F VES GA+K +V+
Sbjct: 226 VTRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNA 285
Query: 205 VTVLKQKLSNLQ 216
+ +LKQKL ++
Sbjct: 286 IDLLKQKLDAVR 297
>gi|452003608|gb|EMD96065.1| hypothetical protein COCHEDRAFT_1088202 [Cochliobolus
heterostrophus C5]
Length = 332
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 133/231 (57%), Gaps = 20/231 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++ N++VL+DEF+ R+GLIPL+S + VD +LYSRDC C +C CSV TL+
Sbjct: 48 LAIDVVEVFDNTSVLADEFVCHRLGLIPLSS-KGVDDLLYSRDCDCEGYCDNCSVVLTLN 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD----ILIVKLRKGQELR 116
KC + V DL + SR + ++ TD IVKLR+GQ +
Sbjct: 107 AKCTGSEVMKVYARDLV--------IESRPPNDELGRPVITDSEGTGSCIVKLRRGQAIN 158
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYS-ELDET- 170
++ AKKG KEHAKW P+A + FEYDP N + H + EWPK E LD
Sbjct: 159 MKCIAKKGIAKEHAKWAPSAAIGFEYDPANKLHHLDYWHEEDAEKEWPKDEARVNLDGGP 218
Query: 171 -QHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+ P+N+ A P ++F++VE+ G ++P+ IV G+ L+ KL+ + +L+
Sbjct: 219 PNPDEPFNYNAVPTRFFYDVETVGGIEPDQIVAKGIQRLQIKLAEVLKELS 269
>gi|451855909|gb|EMD69200.1| hypothetical protein COCSADRAFT_75709 [Cochliobolus sativus ND90Pr]
Length = 332
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 133/231 (57%), Gaps = 20/231 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++ N++VL+DEF+ R+GLIPL+S + VD +LYSRDC C +C CSV TL+
Sbjct: 48 LAIDVVEVFDNTSVLADEFVCHRLGLIPLSS-KGVDDLLYSRDCDCEGYCDNCSVVLTLN 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD----ILIVKLRKGQELR 116
KC + V DL + SR + ++ TD IVKLR+GQ +
Sbjct: 107 AKCTGSEVMKVYARDLV--------IESRPPNDELGRPVITDSEGTGSCIVKLRRGQAIN 158
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYS-ELDET- 170
++ AKKG KEHAKW P+A + FEYDP N + H + EWPK E LD
Sbjct: 159 MKCIAKKGIAKEHAKWAPSAAIGFEYDPANKLHHLDYWHEEDAEKEWPKDEARVNLDGGP 218
Query: 171 -QHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+ P+N+ A P ++F++VE+ G ++P+ IV G+ L+ KL+ + +L+
Sbjct: 219 PNPDEPFNYNAVPTRFFYDVETVGGIEPDQIVAKGIQRLQIKLAEVLKELS 269
>gi|326469671|gb|EGD93680.1| RNA polymerase II subunit 3 [Trichophyton tonsurans CBS 112818]
gi|326478798|gb|EGE02808.1| RNA polymerase II subunit 3 [Trichophyton equinum CBS 127.97]
Length = 351
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 125/224 (55%), Gaps = 9/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL DEFI+ R+GLIPL S +LYSRDC C C+ C + +L
Sbjct: 51 VAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNCDTDMLYSRDCDCEAGCARCVINLSLH 110
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC + V DL R D G +I KLR+GQE++
Sbjct: 111 AKCTTEDIMKVYARDLVVVGDRANEWVGNPVVTDPEGKGP----IICKLRRGQEVKFNCI 166
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQ-HEAP 175
KKG KEHAKW PTA V FEYDP N++RH + EWP S + + Q + P
Sbjct: 167 VKKGIAKEHAKWAPTAAVGFEYDPHNNLRHVDYWFEEDPVKEWPLSANAGWETAQPKDLP 226
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+N++A PN ++ ++ES G L+P+ +V G+ ++++KL+ + + L
Sbjct: 227 FNYDATPNTFYIDIESIGNLEPDAVVQQGIIMMQRKLAEIISGL 270
>gi|225684781|gb|EEH23065.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides
brasiliensis Pb03]
Length = 283
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 129/224 (57%), Gaps = 9/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+N++VL DEF+A R+GLIPL S + YSRDC C C+ C V +L+
Sbjct: 52 VAIDVVEIESNTSVLPDEFVAHRLGLIPLNSKNCDADMDYSRDCDCEGGCARCVVMLSLN 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C + V DL R D G +I KL +GQEL++
Sbjct: 112 VRCTGEDVMKVYARDLIIVGDRANEWVGSPVITDAEGKGP----VICKLSRGQELKMTCI 167
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELD-ETQHEAP 175
AKKG KEH+KW PTA V FEYDP N+++H + EWP S +E + Q + P
Sbjct: 168 AKKGIAKEHSKWAPTAAVGFEYDPHNNLKHVDYWYEEDPAKEWPISPNAEWETAAQPDMP 227
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++++ +P+ ++ +VES G L+P+ IV G+ VL++KL+ + + L
Sbjct: 228 FDYDVQPSTFYIDVESIGNLEPDAIVQQGIMVLQRKLAEIISAL 271
>gi|164658784|ref|XP_001730517.1| hypothetical protein MGL_2313 [Malassezia globosa CBS 7966]
gi|159104413|gb|EDP43303.1| hypothetical protein MGL_2313 [Malassezia globosa CBS 7966]
Length = 270
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 146/263 (55%), Gaps = 23/263 (8%)
Query: 6 VQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVD 65
V++ N+TVL DEF+A R+G+IPL S + ++ R+C+C D C CSVE +LD C
Sbjct: 2 VEITINTTVLPDEFLAHRLGMIPLLSMDTAKVLIDQRECSCEDGCDRCSVELSLDALCTS 61
Query: 66 DQ----------TRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD----DILIVKLRK 111
D+ R T A++ S ++ PV R+ D G+ D ++IV+LRK
Sbjct: 62 DRGAMLVTSKDLIRSNTIANMYSDESVFGPVAPRHPDFG-KPVGQDDPNANGVVIVQLRK 120
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL----FPKPDEWPKSEYSEL 167
GQ ++ R A+KGF KEHAKW+P + V FEYDP N++RHT F EWP+S+ +
Sbjct: 121 GQHIKARCIARKGFAKEHAKWSPVSAVGFEYDPHNTLRHTTLWYEFDAKKEWPESKNARE 180
Query: 168 DETQHE-APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFY 226
+E E A ++ + ++++F+VES G+L P IV +++L+ K + + +L + +
Sbjct: 181 EEPPAEGALFDPNLQASRFYFDVESVGSLHPAEIVDTALSLLEYKTAQIVQELG---MLF 237
Query: 227 VINEAPYNWEAKPNKYFFNVESA 249
+A N A P ++ A
Sbjct: 238 QPTDAAVNAGAIPPGGMYDSYGA 260
>gi|452987978|gb|EME87733.1| hypothetical protein MYCFIDRAFT_129897 [Pseudocercospora fijiensis
CIRAD86]
Length = 342
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 140/241 (58%), Gaps = 26/241 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL+DEF+A R+GLIPL++ + VD ++ RDCTC ++C CSV L+
Sbjct: 35 IAIDLVEIENNTSVLADEFLAHRLGLIPLST-KGVDEMIDFRDCTCDEYCDNCSVVLRLN 93
Query: 61 -VKCVDDQTRHVTTADLKSTDA--------------RVVPVTSRNRDADMNEYGETDDIL 105
V DQ V DL A V + R M+ G L
Sbjct: 94 AVNRSSDQNLKVFARDLFVESAAPGGYNRTNGVNGNSVDELPPRGHPIIMDPAGHGP--L 151
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-----PKPDEWP 160
I +LR+GQELR++ AKKG KEHAKW PTA + FEYDP N +RHT PK EWP
Sbjct: 152 ICQLRRGQELRIKCVAKKGIAKEHAKWAPTAAIAFEYDPWNKLRHTTLWYETDPKA-EWP 210
Query: 161 K-SEYSELDETQHEA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
+ ++ E +E E P+N++A+PN+++ ++E G + P+ I+ G+ VL+ K +++ +
Sbjct: 211 EPAKNGEWEEPPQEGEPFNYDAEPNQFYIDLEGTGVMPPDQILHSGIRVLQNKFASIIKE 270
Query: 219 L 219
L
Sbjct: 271 L 271
>gi|402076627|gb|EJT72050.1| DNA-directed RNA polymerase II subunit RPB3 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 340
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 131/223 (58%), Gaps = 13/223 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID +++ N++VL+DEFIA R+GL+PL + V D + YSRDC C +C CSV ++
Sbjct: 53 IAIDNCEIKENTSVLADEFIAHRLGLVPLDARGVAD-LNYSRDCDCEQYCDNCSVTIEIN 111
Query: 61 VKCVDDQTRHVT---TADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
+C D HV+ DL + D +E G I++ KLR GQE+R+
Sbjct: 112 ARCEVDDPGHVSKFYAKDLWVVGNPPNKYVGKPVITDPDENG----IILFKLRYGQEIRI 167
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF---PKPD-EWPKSEYSELDETQHE 173
R AKKG KEHAKW P + FEYDP N +RH PD EWP S+ +E + E
Sbjct: 168 RCIAKKGIAKEHAKWCPATAIGFEYDPHNRLRHLDLWYEKDPDEEWPLSKNAEREPAPQE 227
Query: 174 AP-YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
++++A PN+++F+VE+AG L P+ IV G+ L++KL+ +
Sbjct: 228 GERFDYDAVPNRFYFDVETAGNLPPDAIVQEGIKTLQEKLAGV 270
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 31/40 (77%)
Query: 233 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 272
++++A PN+++F+VE+AG L P+ IV G+ L++KL+ +
Sbjct: 231 FDYDAVPNRFYFDVETAGNLPPDAIVQEGIKTLQEKLAGV 270
>gi|226286652|gb|EEH42165.1| DNA-directed RNA polymerase II subunit RPB3 [Paracoccidioides
brasiliensis Pb18]
Length = 352
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 129/224 (57%), Gaps = 9/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+N++VL DEF+A R+GLIPL S + YSRDC C C+ C V +L+
Sbjct: 52 VAIDVVEIESNTSVLPDEFVAHRLGLIPLNSKNCDADMDYSRDCDCEGGCARCVVMLSLN 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C + V DL R D G +I KL +GQEL++
Sbjct: 112 VRCTGEDVMKVYARDLIIVGDRANEWVGSPVITDAEGKGP----VICKLSRGQELKMTCI 167
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELD-ETQHEAP 175
AKKG KEH+KW PTA V FEYDP N+++H + EWP S +E + Q + P
Sbjct: 168 AKKGIAKEHSKWAPTAAVGFEYDPHNNLKHVDYWYEEDPAKEWPISPNAEWETAAQPDMP 227
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++++ +P+ ++ +VES G L+P+ IV G+ VL++KL+ + + L
Sbjct: 228 FDYDVQPSTFYIDVESIGNLEPDAIVQQGIMVLQRKLAEIISAL 271
>gi|242779067|ref|XP_002479367.1| RNA polymerase II subunit 3 [Talaromyces stipitatus ATCC 10500]
gi|218722986|gb|EED22404.1| RNA polymerase II subunit 3 [Talaromyces stipitatus ATCC 10500]
Length = 353
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/227 (39%), Positives = 131/227 (57%), Gaps = 10/227 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++V+ DEF+A R+GLIPL S + + Y+RDCTC +CS CSV TL
Sbjct: 50 VAIDIVEVEVNTSVIPDEFLAHRLGLIPLNSKHCDNDMEYNRDCTCESWCSRCSVRLTLH 109
Query: 61 VKCVD-DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+C D V + DL T R D G LI KL KGQEL+L
Sbjct: 110 ARCNQADDVMKVYSRDLVVTGDRANEWVGNPVITDPEGKGP----LIAKLIKGQELKLTC 165
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQ-HEA 174
A+KG KEHAKW+PT+ V FEYDP N+++H + EWP SE + + +
Sbjct: 166 IARKGIAKEHAKWSPTSAVGFEYDPHNNLKHLDYWYEEDPAKEWPISENGKWETPNPPDQ 225
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
P++++A+P+ ++ +VES G L+P+ IV G+ L+ KL+ + L +
Sbjct: 226 PFDYDAQPHTFYVDVESIGNLEPDAIVQQGILTLQTKLATIIDTLTN 272
>gi|378732910|gb|EHY59369.1| DNA-directed RNA polymerase II subunit C [Exophiala dermatitidis
NIH/UT8656]
Length = 335
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 129/221 (58%), Gaps = 13/221 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC-TCVDFCSECSVEFTL 59
+AID V + NS+VL DE++A R+ LIPL S V + + Y+RDC C D C CSV L
Sbjct: 60 IAIDLVDIITNSSVLPDEYLAHRLALIPLASKGVGENLNYTRDCDRCDDHCEYCSVVLRL 119
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+C T V DL D R + + D+N G LI KLR+GQE+ L
Sbjct: 120 HARCTRPGTMMVYARDLTVADPRQDGI-GQPVIRDVNGTGP----LIAKLRQGQEIHLEC 174
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYS---ELDETQH 172
AKKG KEHAKW PTA V FEYDP+N ++H + +EWP E + E D+T
Sbjct: 175 IAKKGIAKEHAKWAPTAAVGFEYDPNNKLKHLDYWYETDAKEEWPVDERNATWEGDDTAA 234
Query: 173 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
+A ++ +A P+ +FF+VE G L+P++IV G+ V+++KL+
Sbjct: 235 DASFDPDAVPSAFFFDVEGVGTLEPDDIVRGGIEVIQKKLA 275
>gi|353235564|emb|CCA67575.1| related to RPB3-DNA-directed RNA polymerase II chain
[Piriformospora indica DSM 11827]
Length = 336
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 134/235 (57%), Gaps = 14/235 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V E N+TVL DEFIA R+G+IPL S + + Y+RDC C C C V TL
Sbjct: 41 VAIDMVVFEVNTTVLPDEFIAHRLGMIPLISTNCDEGMRYTRDCDCELGCPLCMVVLTLH 100
Query: 61 VKC-VDDQTRHVTTADLKSTDARVV----PVTSRNRDADM----NEYGETDDILIVKLRK 111
V+C + T ++T+ L+ +T R D + + ILI LRK
Sbjct: 101 VRCDMPGTTMNITSDHLQIQSGGDAWGGEELTKRGEDFGLPVSKSRGFNGHPILIASLRK 160
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSEL 167
GQEL++R AKKG K+HAKW+P + FEYDP N +RHT + K EWP S +E
Sbjct: 161 GQELKIRCEAKKGIAKDHAKWSPCTALGFEYDPYNKLRHTTYWFETDKQAEWPLSANAEE 220
Query: 168 DETQHE-APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
+E E AP+++ A+PNK++FNVE+ G+L + +++ ++ ++ + + L + H
Sbjct: 221 EEPPREDAPFDYNAEPNKFYFNVETDGSLTAKEVILKSLSNMQSRTATLVYNIKH 275
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 38/56 (67%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDAL 285
+AP+++ A+PNK++FNVE+ G+L + +++ ++ ++ + + L + H+ DA+
Sbjct: 227 DAPFDYNAEPNKFYFNVETDGSLTAKEVILKSLSNMQSRTATLVYNIKHQSRPDAM 282
>gi|302679472|ref|XP_003029418.1| hypothetical protein SCHCODRAFT_39441 [Schizophyllum commune H4-8]
gi|300103108|gb|EFI94515.1| hypothetical protein SCHCODRAFT_39441, partial [Schizophyllum
commune H4-8]
Length = 257
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 132/227 (58%), Gaps = 34/227 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+ E N+TVL DEFIA R+G++PL SD + + Y+RDCTC+ +C C++E LD
Sbjct: 39 VAIDLVEFETNTTVLPDEFIAHRLGMVPLISDNCEEGMRYTRDCTCLSWCQYCAIELVLD 98
Query: 61 VKCVDDQ------TRHVTTADLKSTDARVV--------------PVTSRNRDADMNEYGE 100
VKC +D ++H+ +++ PVT R DA
Sbjct: 99 VKCTEDNMSMDVTSKHLDVQNVQPGQPSGAEGDEMASRPPQFGWPVTYREPDA------- 151
Query: 101 TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKP 156
+ ILI ++RKGQ L++R AKKG KEH+KW+P + V FEYDP N +RHT +
Sbjct: 152 -EPILIARIRKGQALKVRCIAKKGIAKEHSKWSPCSAVGFEYDPYNKLRHTTYWYEKSIE 210
Query: 157 DEW-PKSEYSELD-ETQHEAPYNWEAKPNKYFFNVESAGALKPENIV 201
+EW P +EL+ + Q + +++ AKP +++ +VE+ G+L P+ +V
Sbjct: 211 EEWIPNPANTELETKPQPDDVFDYNAKPTRFYIDVETDGSLGPKEVV 257
>gi|389638262|ref|XP_003716764.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
70-15]
gi|351642583|gb|EHA50445.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
70-15]
gi|440465143|gb|ELQ34483.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
Y34]
gi|440489706|gb|ELQ69335.1| DNA-directed RNA polymerase II subunit RPB3 [Magnaporthe oryzae
P131]
Length = 330
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 132/224 (58%), Gaps = 15/224 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID +++ N++VL+DEFIA R+GL+PL++ ++Y+RDC C +C CSV T+
Sbjct: 53 VAIDNCEIKENTSVLADEFIAHRLGLVPLSA-RGASELVYARDCDCEQYCENCSVIITIH 111
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD----DILIVKLRKGQELR 116
KC + +V AR + V R + + TD +++ KLR+ QE+
Sbjct: 112 AKCESEDPNYVM-----KVYARDMVVDGRRVNQSVGTPVITDPDGLGVILFKLRRNQEVH 166
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQH 172
+R AKKG KEHAKW P + FEYDP N +RH +EWP SE + +
Sbjct: 167 IRCVAKKGIAKEHAKWCPATAIGFEYDPHNKLRHLDLWYESNAKEEWPLSENAIREPPPQ 226
Query: 173 EA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
E P++++A PN+++F+VE+ GAL P+ IV G+ VL++KL+NL
Sbjct: 227 EGEPFDYDAVPNRFYFDVETCGALDPDVIVQEGLRVLQEKLANL 270
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 34/41 (82%)
Query: 232 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 272
P++++A PN+++F+VE+ GAL P+ IV G+ VL++KL+NL
Sbjct: 230 PFDYDAVPNRFYFDVETCGALDPDVIVQEGLRVLQEKLANL 270
>gi|328853564|gb|EGG02702.1| hypothetical protein MELLADRAFT_72730 [Melampsora larici-populina
98AG31]
Length = 359
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/240 (37%), Positives = 139/240 (57%), Gaps = 29/240 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL--YSRDCTCVDFCSECSVEFT 58
+AI V+ E N++VL DE IA R+GL+PL S+++ D+ L + RDCTC+ FC +CS+E
Sbjct: 57 VAIHSVEFEENTSVLPDEMIAHRLGLMPLMSEDL-DKYLKNWQRDCTCLSFCDDCSIELV 115
Query: 59 LDVKC-VDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYG----------ETDDILIV 107
L VK + +T VT+ DL +T R D + G E +LI
Sbjct: 116 LSVKSTLPGETLEVTSKDLV--------ITPREDGGDRGDVGKPVQFTLPNGEQPGVLIT 167
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF------PKPDEWPK 161
KLRKGQE++L+ A KG +EHAKW+ + + FEYDP N + HT EWP
Sbjct: 168 KLRKGQEVKLKCRAIKGIAQEHAKWSAVSTIGFEYDPHNRLGHTDLWYEVGTDARAEWPL 227
Query: 162 SEYSELDETQ-HEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
++ ++ + + P ++ KP++++F+VESAG L+PE+IV+ G+ L KL+ +Q +A
Sbjct: 228 TKNAKFERPPLDDEPVDFTTKPSRFYFDVESAGNLRPEDIVVKGIESLIVKLAAVQQGIA 287
>gi|315050740|ref|XP_003174744.1| DNA-directed RNA polymerase II subunit RPB3 [Arthroderma gypseum
CBS 118893]
gi|311340059|gb|EFQ99261.1| DNA-directed RNA polymerase II subunit RPB3 [Arthroderma gypseum
CBS 118893]
Length = 369
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 126/225 (56%), Gaps = 11/225 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL DEFI+ R+GLIPL S +LYSRDC C C+ C + +L
Sbjct: 69 VAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNCDTDMLYSRDCDCEAGCARCVINLSLH 128
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC + V DL R D G +I KLR+GQE++
Sbjct: 129 AKCTSEDIMKVYARDLVVVGDRANEWVGNPVVTDPEGKGP----IICKLRRGQEVKFNCI 184
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQH--EA 174
KKG KEHAKW PTA V FEYDP N++RH + EWP S + ET H +
Sbjct: 185 VKKGIAKEHAKWAPTAAVGFEYDPHNNLRHVDYWFEEDPIKEWPLSANAGW-ETAHPKDL 243
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
P++++A PN ++ ++ES G L+P+ +V G+ ++++KL+ + + L
Sbjct: 244 PFDYDAAPNTFYIDIESIGNLEPDAVVQQGIIMMQRKLAEIISGL 288
>gi|296812527|ref|XP_002846601.1| RNA polymerase II subunit 3 [Arthroderma otae CBS 113480]
gi|238841857|gb|EEQ31519.1| RNA polymerase II subunit 3 [Arthroderma otae CBS 113480]
Length = 359
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 9/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL DEFI+ R+GLIPL S +LYSRDC C C C + +L
Sbjct: 61 VAIDVVEIEVNTSVLPDEFISHRLGLIPLCSKNCDTDMLYSRDCDCEGGCQRCVINLSLH 120
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC ++ V DL R D G +I KLR+GQE++
Sbjct: 121 AKCTSEEIMKVYARDLVVVGDRANEWVGNPVLTDPEGKGP----IICKLRRGQEVKFNCI 176
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQ-HEAP 175
KKG KEHAKW PTA V FEYDP N++RH + EWP S + + Q + P
Sbjct: 177 VKKGIAKEHAKWAPTAAVGFEYDPHNNLRHVDYWFEEDPIKEWPLSANAGWETAQPRDMP 236
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++++A+PN ++ ++ES G L+P+ +V + ++++KL+ + + L
Sbjct: 237 FDYDAQPNTFYIDIESIGNLEPDAVVQQAIIMMQRKLAEIISGL 280
>gi|323348153|gb|EGA82407.1| Rpb3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 240
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/198 (43%), Positives = 124/198 (62%), Gaps = 10/198 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+GLIPL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 44 LAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V + DL V + RN + + E + +LI KLRKGQEL+L
Sbjct: 103 AFXESESTTNVYSKDL----VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P A + FEYDP N ++HT + EWP+S+ E ++ +E P
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDP 218
Query: 176 YNWEAKPNKYFFNVESAG 193
++++A+ + ++ NVES G
Sbjct: 219 FDYKAQADTFYMNVESVG 236
>gi|21593370|gb|AAM65319.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
Length = 319
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 99/252 (39%), Positives = 135/252 (53%), Gaps = 38/252 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLI LTS+ + + +SRDC D C CSVEF
Sbjct: 48 VAIDLVEIEVNSSVLNDEFIAHRLGLISLTSERAM-SMRFSRDCDACDGDGQCEFCSVEF 106
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
L KCV DQT VT+ DL S D V PV D+ +++ E I+IVKLR+GQEL+L
Sbjct: 107 RLSSKCVTDQTLDVTSRDLYSADPTVTPV-DFTIDSSVSDSSEHKGIIIVKLRRGQELKL 165
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQ------ 171
RA A+KG GK+HAKW+P A V F Y+PD + + + K + E T+
Sbjct: 166 RAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDP 225
Query: 172 ----------------HEAPYNWEA-----------KPNKYFFNVESAGALKPENIVIMG 204
E EA K + + F VES GA+K +V+
Sbjct: 226 VTRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNA 285
Query: 205 VTVLKQKLSNLQ 216
+ +LKQKL ++
Sbjct: 286 IDLLKQKLDAVR 297
>gi|226529628|ref|NP_001149261.1| LOC100282883 [Zea mays]
gi|195625852|gb|ACG34756.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Zea mays]
gi|223974247|gb|ACN31311.1| unknown [Zea mays]
gi|414588991|tpg|DAA39562.1| TPA: DNA-directed RNA polymerase II polypeptide A [Zea mays]
Length = 328
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 137/265 (51%), Gaps = 50/265 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS + ++ +SRDC D C CSVEF
Sbjct: 51 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSAAAM-QMRFSRDCDACDGDGSCEYCSVEF 109
Query: 58 TLDVKCVD-DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-----------DIL 105
L V D DQT VT+ DL+S D +V PV A + G TD IL
Sbjct: 110 HLSVHATDSDQTLEVTSNDLRSMDPKVCPVDQAR--AYQHALGGTDPFGANASNENRGIL 167
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD-------- 157
IVKLR+GQELRLRA A+KG GK+HAKW+P A V F Y+PD + L
Sbjct: 168 IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRINEELMETLTVEERISLI 227
Query: 158 EWPKSEYSELDETQHEAPYNWE------------------------AKPNKYFFNVESAG 193
E ++ ELD N E AK + + F VE+ G
Sbjct: 228 ESSPTKVFELDSANQVVVKNAEAYTYDDEVIKHAEAIGKPGLVEITAKEDSFVFTVETTG 287
Query: 194 ALKPENIVIMGVTVLKQKLSNLQTQ 218
A+ +++ +TVL+QKL ++ Q
Sbjct: 288 AITAYELIMNAITVLRQKLDAVRLQ 312
>gi|320033013|gb|EFW14963.1| DNA-directed RNA polymerase 2 subunit RPB3 [Coccidioides posadasii
str. Silveira]
Length = 345
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 9/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+N++VL DEFIA R+GLIPL S ++Y+R+C C CS C + L
Sbjct: 51 VAIDVVEIESNTSVLPDEFIAHRLGLIPLHSKNCDVDMVYARECDCEGGCSRCVITLQLH 110
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC + V DL R D G +I KLR+GQE+++
Sbjct: 111 AKCTGEGVMVVYARDLVVVGDRANEWVGNPVINDPAGKGP----IICKLRRGQEVKMTCT 166
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDE-TQHEAP 175
KKG KEHAKW+PTA V FEYDP N+++H + EWP S +E + + P
Sbjct: 167 VKKGIAKEHAKWSPTAAVGFEYDPHNNLKHVDYWYEEDPIKEWPISANAEWENPVPPDMP 226
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++++A P+ ++ +VES G+L+P+ IV G++VL++KL+ + + L
Sbjct: 227 FDYDATPSTFYLDVESVGSLEPDAIVQQGISVLQRKLAEIISAL 270
>gi|119190113|ref|XP_001245663.1| hypothetical protein CIMG_05104 [Coccidioides immitis RS]
gi|392868567|gb|EAS34367.2| RNA polymerase II subunit 3 [Coccidioides immitis RS]
Length = 345
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 9/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+N++VL DEFIA R+GLIPL S ++Y+R+C C CS C + L
Sbjct: 51 VAIDVVEIESNTSVLPDEFIAHRLGLIPLHSKNCDVDMVYARECDCEGGCSRCVITLQLH 110
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC + V DL R D G +I KLR+GQE+++
Sbjct: 111 AKCTGEGVMVVYARDLVVVGDRANEWVGNPVINDPAGKGP----IICKLRRGQEVKMTCT 166
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDE-TQHEAP 175
KKG KEHAKW+PTA V FEYDP N+++H + EWP S +E + + P
Sbjct: 167 VKKGIAKEHAKWSPTAAVGFEYDPHNNLKHVDYWYEEDPIKEWPISANAEWENPVPPDMP 226
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++++A P+ ++ +VES G+L+P+ IV G++VL++KL+ + + L
Sbjct: 227 FDYDATPSTFYLDVESVGSLEPDAIVQQGISVLQRKLAEIISAL 270
>gi|303322553|ref|XP_003071268.1| DNA-directed RNA polymerase II 45 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240110970|gb|EER29123.1| DNA-directed RNA polymerase II 45 kDa polypeptide, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 345
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 9/224 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+N++VL DEFIA R+GLIPL S ++Y+R+C C CS C + L
Sbjct: 51 VAIDVVEIESNTSVLPDEFIAHRLGLIPLHSKNCDVDMVYARECDCEGGCSRCLITLQLH 110
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC + V DL R D G +I KLR+GQE+++
Sbjct: 111 AKCTGEGVMVVYARDLVVVGDRANEWVGNPVINDPAGKGP----IICKLRRGQEVKMTCT 166
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDE-TQHEAP 175
KKG KEHAKW+PTA V FEYDP N+++H + EWP S +E + + P
Sbjct: 167 VKKGIAKEHAKWSPTAAVGFEYDPHNNLKHVDYWYEEDPIKEWPISANAEWENPVPPDMP 226
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++++A P+ ++ +VES G+L+P+ IV G++VL++KL+ + + L
Sbjct: 227 FDYDATPSTFYLDVESVGSLEPDAIVQQGISVLQRKLAEIISAL 270
>gi|149032428|gb|EDL87319.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_d
[Rattus norvegicus]
Length = 165
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/102 (70%), Positives = 87/102 (85%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD 102
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E D
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQD 146
>gi|453089708|gb|EMF17748.1| insert subdomain of RNA polymerase alpha subunit [Mycosphaerella
populorum SO2202]
Length = 362
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/245 (37%), Positives = 143/245 (58%), Gaps = 26/245 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID ++EAN++VL+DEF+A R+GLIPL++ + VD ++ RDCTC ++C CSV L+
Sbjct: 54 IAIDLCEIEANTSVLADEFLAHRLGLIPLST-KGVDEMVDFRDCTCDEYCDNCSVVLRLN 112
Query: 61 VKCVD-DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDI--------------- 104
+ DQ V DL ++ V + NR +N +DD+
Sbjct: 113 AANRNSDQNLKVFARDL-FVESGAPGVATYNRSNGVNGT-SSDDLPPRGAPIIGDPAGQG 170
Query: 105 -LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH-TLFPKPD---EW 159
LI +LR+GQELR++ AKKG KEHAKW PTA + FEYDP N ++H TL+ + D EW
Sbjct: 171 PLICQLRRGQELRIKCIAKKGIAKEHAKWAPTAAIGFEYDPWNKLKHTTLWYETDAKAEW 230
Query: 160 PKSEY-SELDETQHEA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT 217
P+ + + +E E P+++ A+P ++F +E G + P+ I+ G+ VL+ KL+ +
Sbjct: 231 PEPQKNGDWEEPPQEGEPFDYAAEPTNFYFELEGTGVMPPDQILHSGIRVLQAKLAGIIR 290
Query: 218 QLAHD 222
L D
Sbjct: 291 DLGTD 295
>gi|402224256|gb|EJU04319.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 401
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 140/240 (58%), Gaps = 30/240 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL DEF++ RIG+IPLTS + + Y RDC C+ C C++ + +D
Sbjct: 42 VAIDMVEIEVNTTVLVDEFLSHRIGMIPLTSTNCEEGMRYKRDCPCLGICRYCAIVYDID 101
Query: 61 VKCVDDQ----TRHVTTA-----DLKSTDARVVP--VTSRNRDADMNEYGETD------D 103
V+C + + + H+T D + D+ ++ R ++ + TD
Sbjct: 102 VRCTEGEMNVTSDHLTMVPPDQWDHEEQDSSAAEDILSKRGKNFGVPAGPATDPDPNRRP 161
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEW 159
I +V++RKGQ L+ R A+KG KEHAKW+P A V FEYDP N +RHT + + EW
Sbjct: 162 ISLVRMRKGQALKARCVARKGIAKEHAKWSPCAAVGFEYDPHNKLRHTAYWYEVDEKAEW 221
Query: 160 PKSEYSELDETQHEAP----YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
P S+ ++ EAP +++ + P++++F+VE+ G+L P+ + G+ L+QKL+ L
Sbjct: 222 PLSKNAD-----EEAPPGDVFDFTSIPDRFYFDVETTGSLAPQEACLRGLAELQQKLAGL 276
>gi|336261545|ref|XP_003345560.1| hypothetical protein SMAC_06213 [Sordaria macrospora k-hell]
gi|380094769|emb|CCC07270.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 311
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 114/185 (61%), Gaps = 10/185 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++EANS+VL+DEFIA R+GLIPL + E +D++LYSRDC C ++C CSV L
Sbjct: 54 IAIDLVEIEANSSVLADEFIAHRLGLIPLNA-EGIDQLLYSRDCDCDEYCEHCSVTLNLH 112
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC D V DL RV V D G LI+KLR GQE++L+
Sbjct: 113 AKCTGDDIMQVCARDLVPVGDRVNQVLGSPIINDPEGQGP----LILKLRHGQEIKLQCI 168
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRH-TLFPKPD---EWPKSEYSELDETQHEA-P 175
AKKG KEH+KW P+A + FEYDP N + H L+ + D EWP SEY++ +E E P
Sbjct: 169 AKKGIAKEHSKWAPSAAIGFEYDPHNKLHHLDLWYEQDPKKEWPPSEYADWEEPPQEGEP 228
Query: 176 YNWEA 180
++++A
Sbjct: 229 FDYDA 233
>gi|169608898|ref|XP_001797868.1| hypothetical protein SNOG_07533 [Phaeosphaeria nodorum SN15]
gi|111063879|gb|EAT84999.1| hypothetical protein SNOG_07533 [Phaeosphaeria nodorum SN15]
Length = 335
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 128/230 (55%), Gaps = 13/230 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++ N++VL+DEF+ R+GLIPL+S VD +LY+RDC C +C C+V +L+
Sbjct: 48 LAIDVVEVLDNTSVLADEFVCHRLGLIPLSS-RGVDDLLYARDCDCEGYCDNCAVVLSLN 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC + V DL R R D G IVKLR+GQ + +R
Sbjct: 107 AKCTGSEIMKVFARDLVIESNRPNDEVGRPVITDSEGTGSC----IVKLRRGQAINMRCI 162
Query: 121 AKKGFGKEHAKWNPTA-GVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEAP 175
AKKG KEHAKW P+A + FEYDP N + H + EWPK E + E P
Sbjct: 163 AKKGIAKEHAKWAPSASAIGFEYDPANKLHHLDYWFEENAAAEWPKDEERINLDGGPELP 222
Query: 176 ---YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
++ +A P ++F++VE+ G L P+ IV G+ L+QKL+++ +L D
Sbjct: 223 DTEFDHKAVPERFFYDVETVGGLDPDQIVTKGIETLQQKLASVIKELHGD 272
>gi|297832024|ref|XP_002883894.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
gi|297329734|gb|EFH60153.1| RBP36A [Arabidopsis lyrata subsp. lyrata]
Length = 319
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/251 (39%), Positives = 131/251 (52%), Gaps = 38/251 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V +E NS+VL+DEFIA R+GLIPLTS+ + + + +DC D C CSVEF
Sbjct: 48 IAIDLVNIEVNSSVLNDEFIAQRLGLIPLTSERAM-SMRFCQDCDACDGEGQCEFCSVEF 106
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
L KCV DQT VT+ DL S D V PV D+ ++ E I IVKLR+GQEL+L
Sbjct: 107 PLSAKCVTDQTLDVTSRDLYSADPTVTPV-DFTIDSSASDSSEQKGITIVKLRRGQELKL 165
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQ------ 171
+A A+KG GK+HAKW+P A V F Y+PD + L + K + E T+
Sbjct: 166 KAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDLMDTLTDEEKIDLIESSPTKVFGIDP 225
Query: 172 ----------------HEAPYNWEA-----------KPNKYFFNVESAGALKPENIVIMG 204
E EA K + + F VES GALK +V+
Sbjct: 226 VTRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIYPKHDSFVFTVESTGALKASQLVLNA 285
Query: 205 VTVLKQKLSNL 215
+ +LKQKL +
Sbjct: 286 IDILKQKLDAI 296
>gi|393217477|gb|EJD02966.1| insert subdomain of RNA polymerase alpha subunit [Fomitiporia
mediterranea MF3/22]
Length = 284
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 125/219 (57%), Gaps = 17/219 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+LE N++VL DEFIA R+G++PL S + I Y+RDCTC C C+V LD
Sbjct: 44 LAIDIVELEMNTSVLPDEFIAHRLGMVPLISTNCEEAIRYNRDCTCEVHCDFCTVSLMLD 103
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE------------TDDILIVK 108
V C +D VT+ L + ++N+ E +LI K
Sbjct: 104 VTCGEDGNLDVTSNHLDVIPVNYTLLNDGEGGEEINKRPEKFGCPVGQGEPGVHPVLICK 163
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEY 164
+R GQ+++ R AKKG KEHAKW+P + V FEYDP N +RHT + + EWP SE
Sbjct: 164 MRPGQQIKARCIAKKGIAKEHAKWSPCSAVAFEYDPYNKLRHTSYWFEEDEKAEWPLSEN 223
Query: 165 S-ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVI 202
+ E + + + +++ AKP K++F+VE+ G+L P+ +V+
Sbjct: 224 AREEEPPREDESFDYNAKPEKFYFDVETVGSLTPQEVVL 262
>gi|242048618|ref|XP_002462055.1| hypothetical protein SORBIDRAFT_02g014460 [Sorghum bicolor]
gi|241925432|gb|EER98576.1| hypothetical protein SORBIDRAFT_02g014460 [Sorghum bicolor]
Length = 328
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/265 (38%), Positives = 137/265 (51%), Gaps = 50/265 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS + ++ +SRDC D C CSVEF
Sbjct: 51 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSAAAM-QMRFSRDCDACDGDGSCEYCSVEF 109
Query: 58 TLDVKCVD-DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-----------DIL 105
L + D DQT VT+ DL+S D +V PV A G TD IL
Sbjct: 110 HLAARATDSDQTLEVTSNDLRSMDPKVCPVDQAR--AYQQALGGTDPFGANTSNENRGIL 167
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFP--------KPD 157
IVKLR+GQELRLRA A+KG GK+HAKW+P A V F Y+PD + L +
Sbjct: 168 IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPDIRINEELMETLTVEERRRLI 227
Query: 158 EWPKSEYSELDETQHEAPYNWE------------------------AKPNKYFFNVESAG 193
E ++ +LD N E AK + + F VE+ G
Sbjct: 228 ESSPTKVFKLDSANQVVVDNAEAYTYDDEVIKHAEALGKPGLVEINAKEDSFIFTVETTG 287
Query: 194 ALKPENIVIMGVTVLKQKLSNLQTQ 218
A+ +++ +TVL+QKL ++ Q
Sbjct: 288 AITAYELIMNAITVLRQKLDAVRLQ 312
>gi|258565481|ref|XP_002583485.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237907186|gb|EEP81587.1| DNA-directed RNA polymerase II 45 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 345
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 127/225 (56%), Gaps = 9/225 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+N++VL DEFIA R+GLIPL S ++Y+RDC C CS C + L
Sbjct: 51 VAIDVVEIESNTSVLPDEFIAHRLGLIPLHSKNCDVDMVYARDCDCEGGCSRCIITLQLH 110
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
KC + V DL R D G +I KLR+ QE+++
Sbjct: 111 AKCTGEGVMVVYARDLVVIGDRANEWVGNPVINDPAGKGP----IICKLRRDQEVKMTCT 166
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDE-TQHEAP 175
KKG KEHAKW PTA + FEYDP N++RH + EWP S +E + + P
Sbjct: 167 VKKGIAKEHAKWAPTAAIGFEYDPHNNLRHVDYWYEEDPVKEWPVSANAEWEHPAPPDMP 226
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
++++A P+ ++ +VES G L+P+ IV G++VL++KL+ + + L+
Sbjct: 227 FDYDAAPSTFYLDVESIGNLEPDAIVQQGISVLQRKLAEIISALS 271
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 36/48 (75%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 277
+ P++++A P+ ++ +VES G L+P+ IV G++VL++KL+ + + L+
Sbjct: 224 DMPFDYDAAPSTFYLDVESIGNLEPDAIVQQGISVLQRKLAEIISALS 271
>gi|330947784|ref|XP_003306966.1| hypothetical protein PTT_20284 [Pyrenophora teres f. teres 0-1]
gi|311315237|gb|EFQ84939.1| hypothetical protein PTT_20284 [Pyrenophora teres f. teres 0-1]
Length = 334
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 136/230 (59%), Gaps = 20/230 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++ N++VL+DEF+ R+GLIPL+S + VD ++YSRDC C +C C+V +L+
Sbjct: 48 LAIDVVEVLDNTSVLADEFVCHRLGLIPLSS-KGVDDLVYSRDCDCEGYCDNCAVVLSLN 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD----ILIVKLRKGQELR 116
KC T +++ AR + + SR + ++ + TD IVKLR+GQ +
Sbjct: 107 AKC--------TGSEIMKVYARDLVIESRTPNDEVGKPVITDSEGTGSCIVKLRRGQAIN 158
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF---PKPD-EWPKSEYSELDETQH 172
+R AKKG KEHAKW P+A + FEYDP N + H + P+ EWPK E +
Sbjct: 159 MRCIAKKGIAKEHAKWAPSAAIGFEYDPANKLHHLDYWHEEDPEKEWPKDEARINLDGGP 218
Query: 173 EAP---YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
E P ++++A P ++F++VE+ G + P+ IV G+ L+ KL+ + L
Sbjct: 219 ENPDERFDFDAVPTRFFYDVETVGGIDPDQIVTKGIHRLQLKLAEIVQGL 268
>gi|189199142|ref|XP_001935908.1| DNA-directed RNA polymerase subunit D [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983007|gb|EDU48495.1| DNA-directed RNA polymerase subunit D [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 334
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 136/230 (59%), Gaps = 20/230 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++ N++VL+DEF+ R+GL+PL+S + VD ++YSRDC C +C C+V +L+
Sbjct: 48 LAIDVVEVLDNTSVLADEFVCHRLGLVPLSS-KGVDDLIYSRDCDCEGYCDNCAVVLSLN 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD----ILIVKLRKGQELR 116
KC T +++ AR + + SR + ++ + TD IVKLR+GQ +
Sbjct: 107 AKC--------TGSEIMKVYARDLVIESRTPNDEVGKPVITDSEGTGSCIVKLRRGQAIN 158
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF---PKPD-EWPKSEYSELDETQH 172
+R AKKG KEHAKW P+A + FEYDP N + H + P+ EWPK E +
Sbjct: 159 MRCIAKKGIAKEHAKWAPSAAIGFEYDPANKLHHLDYWHEEDPEKEWPKDEARINLDGGP 218
Query: 173 EAP---YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
E P ++++A P ++F++VE+ G + P+ IV G+ L+ KL+ + L
Sbjct: 219 ENPDERFDFDAVPTRFFYDVETVGGIDPDQIVTKGIHRLQLKLAEIVQGL 268
>gi|443917515|gb|ELU38215.1| DNA-directed RNA polymerase II polypeptide [Rhizoctonia solani AG-1
IA]
Length = 381
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/240 (37%), Positives = 131/240 (54%), Gaps = 37/240 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+N+TVL DEF+A R+G++PL S DCTC+ C CSVE L+
Sbjct: 47 IAIDLVEIESNTTVLPDEFLAHRLGMVPLVSTNC------DEDCTCISRCKYCSVELYLN 100
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTS---------------RNRDADMNEYGETDD-- 103
V + D+ S + VVP + R + DD
Sbjct: 101 VSSTNQPV------DITSNNLDVVPSGGGEFGGEDEGEEGDELQKRPPNFGTPIGKDDPN 154
Query: 104 ---ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKP 156
+L+ ++RKGQELRLR AKKG KEHAKW+P GV FEYDP N +RHT +
Sbjct: 155 VPPVLLCRIRKGQELRLRCIAKKGTAKEHAKWSPCTGVGFEYDPYNKLRHTTYWYEVDSR 214
Query: 157 DEWPKSEYSELDE-TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
EWP SE ++ +E + + +++ AKP K++F++E+ G + P +V+ G+ L+ KL N+
Sbjct: 215 AEWPLSENAKEEEPPRDDESFDYMAKPEKFYFDIETDGKVAPREVVLKGLIELQTKLGNI 274
>gi|452846630|gb|EME48562.1| hypothetical protein DOTSEDRAFT_162154 [Dothistroma septosporum
NZE10]
Length = 364
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/234 (38%), Positives = 139/234 (59%), Gaps = 21/234 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N++VL+DEF+A R+GL+PL++ + VD ++ RDCTC D+C CSV L+
Sbjct: 55 IAIDLVEIENNTSVLADEFLAHRLGLVPLST-KGVDDMVDGRDCTCDDYCDNCSVVLRLN 113
Query: 61 VKCVD-DQTRHVTTADL-----KSTDARVVPVTSRNRDADMNEYGE-------TDDILIV 107
V + DQ V DL R + D D+ G L+
Sbjct: 114 VANRNSDQNLKVFARDLFVESQAGYGGRGNGANGSSSD-DLPPRGSPILSDPAQQGPLLC 172
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH-TLFPKPD---EWPKSE 163
+LR+GQEL+L+ AK+G KEHAKW PTA + FEYDP N +RH TL+ + D EWP+ E
Sbjct: 173 QLRRGQELKLKCVAKRGIAKEHAKWAPTAAIGFEYDPWNKLRHTTLWYETDAKAEWPEPE 232
Query: 164 Y-SELDETQHEA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
+ +E E P+N++A+P+K++ ++E+ G + P+ I+ + VL+ KL+ +
Sbjct: 233 KNGQWEEKPAEGEPFNYQAEPSKFYIDLEATGVMPPDQILHSSIRVLQAKLAGI 286
>gi|115477954|ref|NP_001062572.1| Os09g0110400 [Oryza sativa Japonica Group]
gi|46806365|dbj|BAD17541.1| putative DNA-directed RNA polymerase II [Oryza sativa Japonica
Group]
gi|113630805|dbj|BAF24486.1| Os09g0110400 [Oryza sativa Japonica Group]
gi|215692481|dbj|BAG87901.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697124|dbj|BAG91118.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768432|dbj|BAH00661.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201657|gb|EEC84084.1| hypothetical protein OsI_30378 [Oryza sativa Indica Group]
gi|222641056|gb|EEE69188.1| hypothetical protein OsJ_28369 [Oryza sativa Japonica Group]
Length = 330
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/266 (37%), Positives = 136/266 (51%), Gaps = 51/266 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS + + +SRDC D C CSVEF
Sbjct: 52 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSAAAM-AMRFSRDCDACDGDGSCEYCSVEF 110
Query: 58 TLDVKCVD-DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-----------DIL 105
L + D DQT VT+ DL+STD +V PV A + G T+ IL
Sbjct: 111 HLAARATDSDQTLEVTSNDLRSTDPKVCPVDQAR--AYQHALGGTEPFDTAAAADQRGIL 168
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
IVKLR+GQELRLRA A+KG GK+HAKW+P A V F Y+P+ + L K
Sbjct: 169 IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPEIRINEELMETLTLEEKRNLV 228
Query: 166 ELDET--------------QHEAPYNWE-------------------AKPNKYFFNVESA 192
E T + Y ++ AK + + F VE+
Sbjct: 229 ESSPTKVFNIDPNTQQVVVEDAEAYTYDDEVIKKADAMGKPGLIEINAKEDSFIFTVETT 288
Query: 193 GALKPENIVIMGVTVLKQKLSNLQTQ 218
GA+ +++ +TVL+QKL ++ Q
Sbjct: 289 GAITAYELIMNAITVLRQKLDAVRLQ 314
>gi|357154558|ref|XP_003576823.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A-like
[Brachypodium distachyon]
Length = 330
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 99/264 (37%), Positives = 137/264 (51%), Gaps = 47/264 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
+AID V++E+NS+VL+DEFIA R+GLIPLTS + + +SRDC D C CSVEF
Sbjct: 52 VAIDLVEIESNSSVLNDEFIAHRLGLIPLTSSGAMG-MRFSRDCDACDGDGSCEHCSVEF 110
Query: 58 TLDVKCVD-DQTRHVTTADLKSTDARVVPV---------TSRNRDADMNEYGETDDILIV 107
L + D ++T VT+ DL+STD +V PV D + + ILIV
Sbjct: 111 HLAARATDANKTLEVTSNDLRSTDPKVCPVDQAMAYQQAIGTADPYDTSTASDHRGILIV 170
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----FPKPDEWPKS 162
KLR+GQELRLRA A+KG K+HAKW+P A V F Y+PD + L + W +S
Sbjct: 171 KLRRGQELRLRAIARKGIAKDHAKWSPAATVTFMYEPDIRINEELMETLTLEEKTSWVES 230
Query: 163 E---------------------YSELDETQHEAP-------YNWEAKPNKYFFNVESAGA 194
Y+ DE +A AK + + F VE+ GA
Sbjct: 231 SPTKVFDIDPNTQQVVVVDREAYTYDDEVIKKAEAMGKPGLIEISAKEDSFVFTVETTGA 290
Query: 195 LKPENIVIMGVTVLKQKLSNLQTQ 218
+ ++I +TVL+QKL ++ Q
Sbjct: 291 ITAYELIINAITVLRQKLDAVRLQ 314
>gi|398411480|ref|XP_003857078.1| hypothetical protein MYCGRDRAFT_67037 [Zymoseptoria tritici IPO323]
gi|339476963|gb|EGP92054.1| hypothetical protein MYCGRDRAFT_67037 [Zymoseptoria tritici IPO323]
Length = 361
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 91/238 (38%), Positives = 139/238 (58%), Gaps = 20/238 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC-TCVDFCSECSVEFTL 59
+AID V++EAN++VL+DEF+A R+GLIPL++ V + + + RDC C + C +CSV L
Sbjct: 55 IAIDLVEVEANTSVLADEFLAHRLGLIPLSTKGVEEMVDW-RDCDQCDEHCDQCSVILRL 113
Query: 60 DVKC-VDDQTRHVTTADL---KSTDARVVPVTSRNRDAD-MNEYG-------ETDDILIV 107
+V DQ V DL +A +D + E G + LI
Sbjct: 114 NVANRSSDQNLKVFARDLFVESGANAGYNRSNGMGNSSDELPERGRPIVMDRDNQGPLIC 173
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH-TLFPKPD---EWPKSE 163
+LR+GQE++L+ A+KG KEHAKW PTA + FEYDP N +RH TL+ + D EWP+ E
Sbjct: 174 QLRRGQEIKLKCIARKGIAKEHAKWAPTAAIGFEYDPWNKLRHTTLWYETDAKAEWPRPE 233
Query: 164 YSEL--DETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+ +E Q P+N+ A+P+ ++ +E G + P+ I+ G+ VL+ KL+ + T+L
Sbjct: 234 KNGGWEEEPQEGEPFNYAAEPSAFYIELEGTGVMPPDQILHSGIRVLQNKLAGIITEL 291
>gi|393246178|gb|EJD53687.1| insert subdomain of RNA polymerase alpha subunit [Auricularia
delicata TFB-10046 SS5]
Length = 380
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 135/244 (55%), Gaps = 29/244 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E+N+ VL DE +A R+G+IPL S + + Y+RDC C+ CS C+V+ L
Sbjct: 43 VAIDMVEIESNTGVLVDELLAHRLGMIPLVSTNCDEAMRYTRDCNCLSSCSSCAVQLELK 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTS-RNRDADMNEYGE------------------- 100
V C D T D+ S VVP+ S N D GE
Sbjct: 103 VSCNTDNR----TLDVTSNHLEVVPMDSYDNFDMGGPATGEELSRRVENFGHPVGKHDPS 158
Query: 101 TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD--- 157
+LI KLRKGQEL+LR AKKG KEHAKW+P A V FEYDP N +RHT + D
Sbjct: 159 VAPVLIAKLRKGQELKLRCIAKKGVAKEHAKWSPCAAVSFEYDPHNKLRHTSYWFEDDIK 218
Query: 158 -EWPKSEYSELDE-TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
EWP + S +E +AP+++ AKP K++ E+ G+L P+ +V+ G+ L+ +L+ L
Sbjct: 219 AEWPPTANSMHEEPPPDDAPFDYTAKPTKFYMEAETVGSLAPKEVVMKGLMELQSRLAKL 278
Query: 216 QTQL 219
L
Sbjct: 279 MLDL 282
>gi|71535027|gb|AAZ32911.1| DNA-directed RNA polymerase II third largest subunit [Medicago
sativa]
Length = 184
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 79/145 (54%), Positives = 99/145 (68%), Gaps = 6/145 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS+ + + +SRDC D C CSVEF
Sbjct: 43 IAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEYCSVEF 101
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
L VKC+ DQT V++ DL S+D V PV DA + G I+IVKLR+GQELRL
Sbjct: 102 HLRVKCITDQTLDVSSKDLISSDHTVTPVDVPGGDASVESDGRG--IIIVKLRRGQELRL 159
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEY 142
RA A+KG GK+HAKW+P A V F Y
Sbjct: 160 RAIARKGIGKDHAKWSPAATVTFMY 184
>gi|323337216|gb|EGA78470.1| Rpb3p [Saccharomyces cerevisiae Vin13]
Length = 240
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 118/198 (59%), Gaps = 10/198 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+GLIPL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 44 LAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V + DL V + RN + + E + +LI KLRKGQEL+L
Sbjct: 103 AFGESESTTNVYSKDL----VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P A + FEYDP N ++HT + EWP+S+ E ++ +E P
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDP 218
Query: 176 YNWEAKPNKYFFNVESAG 193
++++A+ + G
Sbjct: 219 FDYKAQGRYILYECRICG 236
>gi|168029877|ref|XP_001767451.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681347|gb|EDQ67775.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 148/284 (52%), Gaps = 32/284 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSR--DCTCVDFCSECSVEFT 58
+A D V++E NS+VL+DEFIA R+GLIPLTSD ++ + S C C C+VEF
Sbjct: 64 LAFDLVEIEMNSSVLTDEFIAHRLGLIPLTSDRAMEMVFPSECDSCPGDRSCQNCTVEFL 123
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD----DILIVKLRKGQE 114
L VK +D+ + VT DLKS++ VVPV + D+++ G + DI I KL KGQE
Sbjct: 124 LSVKATEDRIKDVTQRDLKSSNDAVVPV-----EIDVDKQGVLEECKMDICIAKLYKGQE 178
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----DNSMRHTLFPKPDEWPKSEYSELDE 169
+ LRA AKKG G HAKW+P A V F ++P + M + W + S LD
Sbjct: 179 ITLRALAKKGMGSLHAKWSPVATVTFHHEPEIYINEEKMEALTLAEKQNWVE---SSLDL 235
Query: 170 TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVIN 229
Q+++ + A K F L P +M V+ LQ + + ++
Sbjct: 236 PQNQS-FPVPATLVKVF-------KLDPATSKVMVVSPGAYTSQELQRNVEAAGMAELVE 287
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 273
A W + + + F+VES GA+ P I + V +LK+KL L+
Sbjct: 288 IA---W--RDDSFIFSVESTGAIAPAKICVDAVNILKKKLLALR 326
>gi|323304520|gb|EGA58286.1| Rpb3p [Saccharomyces cerevisiae FostersB]
Length = 259
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 129/217 (59%), Gaps = 13/217 (5%)
Query: 19 FIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKS 78
+ + +GLIPL S ++ +++ YSRDC C D C +CSV TL + T +V + DL
Sbjct: 3 LLHTDLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDL-- 59
Query: 79 TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGV 138
V + RN + + E + +LI KLRKGQEL+L AKKG KEHAKW P A +
Sbjct: 60 --VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAI 117
Query: 139 CFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-PYNWEAKPNKYFFNVESAG 193
FEYDP N ++HT + EWP+S+ E ++ +E P++++A+ + ++ NVES G
Sbjct: 118 EFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVG 177
Query: 194 ALKPENIVIMGVTVLKQKLSNL---QTQLAHDRVFYV 227
++ + +V+ G+ L++K++++ TQ+ D+V +
Sbjct: 178 SIPVDQVVVRGIDTLQKKVASILLALTQMDQDKVNFA 214
>gi|403414765|emb|CCM01465.1| predicted protein [Fibroporia radiculosa]
Length = 387
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 132/236 (55%), Gaps = 37/236 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A+D V+++ N+TVL DEFIA R+G+IPL S + Y+R L
Sbjct: 45 VAVDMVEVQTNTTVLPDEFIAHRLGMIPLVSHNCDQGMRYTR----------------LS 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNE--------YGET---DD-----I 104
V + T VT+A L + N +A+ NE +G DD +
Sbjct: 89 VMVEEGVTMDVTSAHLDVSGPHRGQEQHWNEEAEGNEEMAKRGSNFGHPVGKDDPNVPPV 148
Query: 105 LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWP 160
LI K+RKGQEL++R AKKG KEHAKW+P + V FEYDP N MRHT + EWP
Sbjct: 149 LICKIRKGQELKVRCIAKKGIAKEHAKWSPCSAVAFEYDPHNKMRHTTYWYETDARAEWP 208
Query: 161 KSEYS-ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
S+ + E + + + P+++ A+PN+++ NVE+ G+L P+ +V+ G+ L+QKL++L
Sbjct: 209 LSDNALEEEPPRDDQPFDYNARPNRFYLNVETDGSLGPQEVVMKGLQELQQKLASL 264
>gi|390602421|gb|EIN11814.1| hypothetical protein PUNSTDRAFT_61925 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 301
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 136/228 (59%), Gaps = 35/228 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVLSDEF+A R+G++PL S + I YSRDC+C+ CS CS+ L
Sbjct: 47 VAIDLVEIETNTTVLSDEFLAHRLGMVPLVSTNCDEAIRYSRDCSCMSSCSYCSIVLQLH 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE-------------------T 101
V C +D TT ++ S VVP + D D + GE
Sbjct: 107 VSCTEDD----TTLNVTSDHLDVVPAS----DDDQGDPGEELTKRVENFGSPVGKGVEGV 158
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-----PKP 156
D +L+ KLRKGQEL++R AKKG KEHAK++P A V FEYDP N +RHT + P+
Sbjct: 159 DPVLLCKLRKGQELKVRCIAKKGISKEHAKFSPCAAVSFEYDPWNKLRHTSYWYEKDPRA 218
Query: 157 DEWPKSEYSELDE--TQHEAPYNWEAKPNKYFFNVESAGALKPENIVI 202
EWP SE + +E + + P+++ AKPNK++F VE+ G+L P+ +V+
Sbjct: 219 -EWPVSEINSKEEEPPRDDEPFDYNAKPNKFYFEVETDGSLGPQEVVM 265
>gi|414588990|tpg|DAA39561.1| TPA: hypothetical protein ZEAMMB73_135001 [Zea mays]
Length = 260
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/160 (51%), Positives = 102/160 (63%), Gaps = 18/160 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS + ++ +SRDC D C CSVEF
Sbjct: 51 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSAAAM-QMRFSRDCDACDGDGSCEYCSVEF 109
Query: 58 TLDVKCVD-DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-----------DIL 105
L V D DQT VT+ DL+S D +V PV A + G TD IL
Sbjct: 110 HLSVHATDSDQTLEVTSNDLRSMDPKVCPVDQAR--AYQHALGGTDPFGANASNENRGIL 167
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
IVKLR+GQELRLRA A+KG GK+HAKW+P A V F Y+PD
Sbjct: 168 IVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPD 207
>gi|15226509|ref|NP_179142.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
gi|12643753|sp|Q39212.2|RPB3B_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB3-B;
Short=RNA polymerase II subunit 3-B; Short=RNA
polymerase II subunit B3-B; AltName: Full=DNA-directed
RNA polymerase II 36 kDa polypeptide B
gi|4544373|gb|AAD22284.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|28973621|gb|AAO64135.1| putative DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana]
gi|29824193|gb|AAP04057.1| putative DNA-directed RNA polymerase II, third largest subunit
[Arabidopsis thaliana]
gi|110736768|dbj|BAF00345.1| DNA-directed RNA polymerase II, third largest subunit [Arabidopsis
thaliana]
gi|330251303|gb|AEC06397.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
Length = 319
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 128/251 (50%), Gaps = 36/251 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYS--RDCTCVDFCSECSVEFT 58
MAI V++E NS+VL+DEFIA R+ LIPLTS+ + DC + C CSVEF
Sbjct: 48 MAIHLVKIEVNSSVLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFP 107
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
L KCV DQT VT+ DL S D V PV ++ ++ E I+I KLR+GQEL+L+
Sbjct: 108 LSAKCVTDQTLDVTSRDLYSADPTVTPV-DFTSNSSTSDSSEHKGIIIAKLRRGQELKLK 166
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPD----NSMRHTLFPK------------------- 155
A A+KG GK+HAKW+P A V + Y+PD M +TL +
Sbjct: 167 ALARKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPV 226
Query: 156 --------PDEWPKSEYSELDETQHEAPYNWEAKP--NKYFFNVESAGALKPENIVIMGV 205
P+ + E P E P + + F VES GALK +V+ +
Sbjct: 227 TGQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAI 286
Query: 206 TVLKQKLSNLQ 216
+LKQKL ++
Sbjct: 287 DILKQKLDAIR 297
>gi|325182041|emb|CCA16494.1| DNAdirected RNA polymerase II 36 kDa polypeptide A putative [Albugo
laibachii Nc14]
Length = 319
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 133/261 (50%), Gaps = 48/261 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD----RILYSRDCTCVDFCSECSVE 56
+AID V +E N++V++DEF+A R+G+IPL D ++ R +YS+DC C + C CSVE
Sbjct: 45 LAIDLVTIEVNTSVMTDEFLAHRLGMIPLLFDGGLEAFRQRFVYSQDCDCEEHCPNCSVE 104
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD--ILIVKLRKGQE 114
F LDV+ + VT+ LKS D + PV + + E+ T D ++I KL GQ
Sbjct: 105 FQLDVR-AEQGMLSVTSDSLKSVDPYIRPVNFSSEE----EFNNTQDTGVIIAKLGPGQH 159
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKP-------------- 156
+RL A AK G GKEHAKW P A F Y+P ++ + P+
Sbjct: 160 IRLSAIAKLGIGKEHAKWAPVAVATFMYEPKITLNQAILSTYTPEQKAELYKSCPTEVYE 219
Query: 157 -------------------DEWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKP 197
DE K S D + +A + + +++ F+VE+ G LKP
Sbjct: 220 TDENYEQFTIANHMRCMYCDECVKVVNSYKDNPEDDAAVTIQMQEDRFIFSVETTGQLKP 279
Query: 198 ENIVIMGVTVLKQKLSNLQTQ 218
E +VI + ++++KLS L+ Q
Sbjct: 280 EEVVICALDIIREKLSYLKHQ 300
>gi|514320|gb|AAB03740.1| RNA polymerase II third largest subunit [Arabidopsis thaliana]
Length = 319
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 127/251 (50%), Gaps = 36/251 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYS--RDCTCVDFCSECSVEFT 58
MAI V++E NS+VL+DEFIA R+ LIPLTS+ + DC + C CSVEF
Sbjct: 48 MAIHLVKIEVNSSVLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFP 107
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
L KCV DQT VT+ DL S D V PV ++ ++ E I+I KLR+GQEL+L+
Sbjct: 108 LSAKCVTDQTLDVTSRDLYSADPTVTPV-DFTSNSSTSDSSEHKGIIIAKLRRGQELKLK 166
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPD----NSMRHTLFPK------------------- 155
A A+KG GK+HAKW+P A V + Y+PD M +TL +
Sbjct: 167 ALARKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPV 226
Query: 156 --------PDEWPKSEYSELDETQHEAPYNWEAKP--NKYFFNVESAGALKPENIVIMGV 205
P+ + E P E P + + +V S GALK +V+ +
Sbjct: 227 TGQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHPKHDSFVLSVHSTGALKASQLVLNAI 286
Query: 206 TVLKQKLSNLQ 216
+LKQKL ++
Sbjct: 287 DILKQKLDAIR 297
>gi|194761110|ref|XP_001962775.1| GF19667 [Drosophila ananassae]
gi|194860376|ref|XP_001969569.1| GG23888 [Drosophila erecta]
gi|190616472|gb|EDV31996.1| GF19667 [Drosophila ananassae]
gi|190661436|gb|EDV58628.1| GG23888 [Drosophila erecta]
Length = 83
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/75 (81%), Positives = 72/75 (96%)
Query: 148 MRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTV 207
MRHTL+PKPDEWPKSE++EL++ Q+EAPYNWEAKPNK+FFNVES+GALKPENIV+MGV V
Sbjct: 1 MRHTLYPKPDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNVESSGALKPENIVVMGVQV 60
Query: 208 LKQKLSNLQTQLAHD 222
LK KLSNLQTQL+H+
Sbjct: 61 LKNKLSNLQTQLSHE 75
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/58 (82%), Positives = 53/58 (91%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALAC 287
EAPYNWEAKPNK+FFNVES+GALKPENIV+MGV VLK KLSNLQTQL+HE +DALA
Sbjct: 26 EAPYNWEAKPNKFFFNVESSGALKPENIVVMGVQVLKNKLSNLQTQLSHESQNDALAV 83
>gi|378756240|gb|EHY66265.1| RNA polymerase II subunit 3 [Nematocida sp. 1 ERTm2]
Length = 254
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 113/224 (50%), Gaps = 17/224 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID VQ + N TV+ +E R+GLIP+ S V++ LY +DC+C FC CS+ LD
Sbjct: 40 LAIDIVQFDKNYTVIPEEMTTDRLGLIPIESS-TVEKYLYPKDCSCKSFCKNCSISIVLD 98
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VK T VT+ L +N +I +L Q ++ +
Sbjct: 99 VKNDGPTTLTVTSKSL-----------FMEGGVSLNIGDPKHPSIITRLGHKQSIKCKCI 147
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKP----DEWPKSEYSELDETQHEAPY 176
A KG GK+HAKW+P A V F YD DNS+RHT F EWPK ++ + Y
Sbjct: 148 AVKGVGKKHAKWSPVATVAFGYDEDNSLRHTKFWHEKDINSEWPKPWFAGESASAQSETY 207
Query: 177 NWEAKPNKYFFNVES-AGALKPENIVIMGVTVLKQKLSNLQTQL 219
+P K+ FNVE G+LKP ++ V VLK KL +++ L
Sbjct: 208 KHSTEPKKFHFNVEVIKGSLKPMEVLSQAVKVLKDKLKHVRDAL 251
>gi|384245015|gb|EIE18511.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Coccomyxa
subellipsoidea C-169]
Length = 303
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 128/258 (49%), Gaps = 46/258 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+GLIPL S V D DF VE TL+
Sbjct: 49 IAIDLVEIEENTTVLNDEFIAHRLGLIPLVSSAVGGMKGVFEDAGEADFLD---VEMTLN 105
Query: 61 VKCVDDQTRHVTTADLK----STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
VKC + T VT+ DL+ D R V D E IL+VK+RK QELR
Sbjct: 106 VKCTSEDTMEVTSNDLQLDANHPDVRPVGYVPGGYDP------ENRGILLVKMRKNQELR 159
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-----PKPDEWPK---------- 161
L+A A+KG GK+HAKW P A V F+Y P+ ++ L + ++W K
Sbjct: 160 LKAIARKGIGKDHAKWIPVATVSFQYMPEITINRALMDTLTEEQKEDWVKATPNPVFRYN 219
Query: 162 --SEYSELDETQH-------EAPYNWEAKP---------NKYFFNVESAGALKPENIVIM 203
++ ELD+ + EA KP + + F VE G L+ E++V+
Sbjct: 220 NITKQVELDDVEQYRYDGEAEAKAEELGKPGLVTIKERQDMFIFRVEGTGVLRAEDVVLT 279
Query: 204 GVTVLKQKLSNLQTQLAH 221
+ VL +KL NLQ L
Sbjct: 280 ALEVLMRKLRNLQEALPQ 297
>gi|290972439|ref|XP_002668960.1| predicted protein [Naegleria gruberi]
gi|284082499|gb|EFC36216.1| predicted protein [Naegleria gruberi]
Length = 324
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 134/280 (47%), Gaps = 58/280 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+ E NS+VL DEFIA R+GLIPLT + + Y+ DC+C C +CSVE TL
Sbjct: 49 LAIDLVEFEMNSSVLHDEFIAHRLGLIPLTCLNI-NSFSYTSDCSCTGHCEKCSVELTLH 107
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC + R VT+ DL S + P T D NE E + I IVKL++GQE++L+A
Sbjct: 108 VKCTESH-RDVTSNDLISNNPSCAPCTLSATSRD-NE-NEHNGITIVKLKRGQEIKLKAI 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMR--------------HTLFPKPD-------EW 159
AKKG GK HAKW+P A + PD ++ T P D
Sbjct: 165 AKKGVGKGHAKWSPVAITTYYIVPDIRIKGCQNTPVNPSDQDNQTEVPAADWIGKFINSC 224
Query: 160 PKSEYS---------ELDETQH----EAPYNWEAKPN--------------------KYF 186
P +S +LD+ + + N E PN ++
Sbjct: 225 PTKVFSVTNDDRLIIDLDKCTYCNECKDFVNDELIPNTSPEFKDFVSIKEKDLGGKREFI 284
Query: 187 FNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFY 226
F VE+ G+ PENIV++G L KL+ + +L R +
Sbjct: 285 FTVETTGSQTPENIVLLGFDTLVGKLAKTRAELIKLRATH 324
>gi|387593833|gb|EIJ88857.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm3]
gi|387595137|gb|EIJ92763.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm1]
Length = 254
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 115/224 (51%), Gaps = 17/224 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID VQ + N TV+ +E R+GLIP+ S +V++ LY +DC+C FC CS+ LD
Sbjct: 40 LAIDIVQFDKNYTVIPEEMTTDRLGLIPIESS-LVEKYLYPKDCSCKSFCKNCSISIVLD 98
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VK VT+ L + + + +I +L Q ++ +
Sbjct: 99 VKNDGQTPMTVTSKSLFVEGGDPINIGDPRYPS-----------IITRLGHKQSIKCKCI 147
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEAPY 176
A KG GK+H+KW+P + V F YD DNS+RHT F EWP +S+ Y
Sbjct: 148 AVKGIGKKHSKWSPVSTVAFGYDEDNSLRHTKFWHEKSINKEWPAPWFSDKSTPAQSEEY 207
Query: 177 NWEAKPNKYFFNVESA-GALKPENIVIMGVTVLKQKLSNLQTQL 219
A P+K++FNVE G+LKP ++ V VLK KL +++ L
Sbjct: 208 VHSADPSKFYFNVEVVKGSLKPMEVLSRAVQVLKDKLKHVRDAL 251
>gi|145328718|ref|NP_001077894.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
gi|330251304|gb|AEC06398.1| DNA-directed RNA polymerase II subunit RPB3-B [Arabidopsis
thaliana]
Length = 235
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 94/147 (63%), Gaps = 3/147 (2%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYS--RDCTCVDFCSECSVEFT 58
MAI V++E NS+VL+DEFIA R+ LIPLTS+ + DC + C CSVEF
Sbjct: 48 MAIHLVKIEVNSSVLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFP 107
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
L KCV DQT VT+ DL S D V PV ++ ++ E I+I KLR+GQEL+L+
Sbjct: 108 LSAKCVTDQTLDVTSRDLYSADPTVTPV-DFTSNSSTSDSSEHKGIIIAKLRRGQELKLK 166
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPD 145
A A+KG GK+HAKW+P A V + Y+PD
Sbjct: 167 ALARKGIGKDHAKWSPAATVTYMYEPD 193
>gi|313232341|emb|CBY09450.1| unnamed protein product [Oikopleura dioica]
Length = 164
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 91/122 (74%), Gaps = 3/122 (2%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDW+++E N+TVL DEF+A R+ LIPL +EVVD++ Y RDC+C +FC++C+VEFTLD
Sbjct: 45 LAIDWIRIEENTTVLIDEFLAHRLALIPLHCEEVVDKMQYIRDCSCDNFCNDCTVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V C D TR VTTADL S + V P ++ D D N +++ ILIVKLRKGQ L+L A+
Sbjct: 105 VTCDTDATRTVTTADLISGNPSVQPALGKSDD-DYNR--DSNQILIVKLRKGQTLKLTAH 161
Query: 121 AK 122
AK
Sbjct: 162 AK 163
>gi|449692874|ref|XP_004213207.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-like,
partial [Hydra magnipapillata]
Length = 131
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 73/87 (83%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ+E N++VL DEFIA RIGLIPLTSDE VD++ YSRDCTC +FC ECSV+FTLD
Sbjct: 45 IAIDWVQIENNTSVLHDEFIAHRIGLIPLTSDEKVDKMCYSRDCTCSEFCDECSVKFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVT 87
VKC + TRHVT+ DL S D +V+PVT
Sbjct: 105 VKCTGETTRHVTSRDLISEDPKVIPVT 131
>gi|221040824|dbj|BAH12113.1| unnamed protein product [Homo sapiens]
Length = 155
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 75/88 (85%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPL SD++VD++ YSRDCT +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTFEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTS 88
V+C +DQTRHVT+ DL S RV+PV++
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVSA 132
>gi|303389576|ref|XP_003073020.1| DNA-directed RNA polymerase II subunit Rpb3 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302164|gb|ADM11660.1| DNA-directed RNA polymerase II subunit Rpb3 [Encephalitozoon
intestinalis ATCC 50506]
Length = 240
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 32/224 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL DE +A R+GLIP+ S + Y +C+C FCSECSV F +D
Sbjct: 40 IAIDMVEIERNNTVLPDEVLAHRLGLIPVYSKR---ELKYKDECSCSGFCSECSVVFEID 96
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V +D R V+T D+ + VV + +I KL + Q L+ R
Sbjct: 97 VVHTEDALRVVSTRDIICDEEDVVVKSGP---------------IITKLARDQGLKARCI 141
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEAPY 176
+KG G+ HAKW+P + + FEYD DN+ R T + +EWP + +E + Q
Sbjct: 142 GRKGIGRTHAKWSPVSAISFEYDKDNARRETNYWFEESIEEEWPGVKQAEANPMQ----- 196
Query: 177 NWEAKPNKYFFNVESA-GALKPENIVIMGVTVLKQKLSNLQTQL 219
+ +K + VE G P IV+ G+ +LK+K++ L + +
Sbjct: 197 ----RVDKIYMCVEVVEGGAGPLAIVLEGLKILKEKIAGLSSAM 236
>gi|358055923|dbj|GAA98268.1| hypothetical protein E5Q_04951 [Mixia osmundae IAM 14324]
Length = 368
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 118/237 (49%), Gaps = 39/237 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD-CTCVDFCSECSVEFTL 59
+AI ++ ++ NS+VL DEF+A R+ LIPL S + ++ RD C C D C EC+V L
Sbjct: 63 LAIGYISVKHNSSVLPDEFLAHRLALIPLQSTGIAHKLEKERDLCGCDDGCDECTVMLQL 122
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYG-----ETDDILIVKLRKGQE 114
DV C R D+ S D V+P R D +G ++ ILI +L GQ
Sbjct: 123 DVAC-----RSAGKLDVTSKDLVVLP---RQDGQDRGGFGMPMSEHSNGILIAQLGPGQR 174
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW--------------- 159
+ L A A +G +HAK P + V FEYDP N + HT D W
Sbjct: 175 ITLLATAHRGIALDHAKHCPVSTVGFEYDPHNKLHHT-----DLWSEQKDAKDRVSKSTW 229
Query: 160 ---PKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
P ++Y E E +W +P++++F+VE+ +L P +V G+ VL +KL+
Sbjct: 230 VKTPNAKYER--EPPSEDAVDWSGQPSRFYFDVETVNSLPPFELVQEGLEVLIRKLA 284
>gi|19074310|ref|NP_585816.1| DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN [Encephalitozoon
cuniculi GB-M1]
gi|19068952|emb|CAD25420.1| DNA-DIRECTED RNA POLYMERASE II THIRD CHAIN [Encephalitozoon
cuniculi GB-M1]
gi|449329459|gb|AGE95731.1| DNA-directed RNA polymerase II third chain [Encephalitozoon
cuniculi]
Length = 240
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 113/222 (50%), Gaps = 32/222 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL DE +A R+GLIP+ S + Y +C+C FCSECSV F +D
Sbjct: 40 IAIDMVEIERNNTVLPDEVLAHRLGLIPIYSKR---ELKYKEECSCSGFCSECSVVFEID 96
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V DD R V+T D+ + V+ + +I KL + Q L+ R
Sbjct: 97 VVHTDDTLRTVSTRDIVCDEEDVIIKSGP---------------VITKLARDQGLKARCI 141
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEAPY 176
+KG GK HAKW+P + + FEYD DN R T + +EWP E + Q
Sbjct: 142 GRKGVGKTHAKWSPVSAISFEYDKDNVRRETNYWFEESIEEEWPGVRQGEANLMQ----- 196
Query: 177 NWEAKPNKYFFNVESA-GALKPENIVIMGVTVLKQKLSNLQT 217
K +K VE G P +V+ G+ +LK+K++ L +
Sbjct: 197 ----KIDKIHMCVEVVEGGAGPLAVVLEGLRILKEKVATLSS 234
>gi|58267768|ref|XP_571040.1| RNA polymerase II subunit 3 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227274|gb|AAW43733.1| RNA polymerase II subunit 3, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 377
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 127/248 (51%), Gaps = 36/248 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V N+T L+DE IA R+GLIPL S V + Y+RDC C + C C V L
Sbjct: 63 IAIDQVLFMQNTTPLADEMIAHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLK 122
Query: 61 VKCVD---DQTRHVTTADLK--------------------STDARVVPVTSRNRDADMNE 97
V +Q VT+ L+ S + R++ NRD +M +
Sbjct: 123 VTFSGNDGEQFMRVTSDMLEVVPSPGGPPPPNPYGPPPELSEEDRII---INNRDPEMGQ 179
Query: 98 -YGETDD----ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL 152
G+ + ILI K+ KGQE+ + A KG K HAKW+P + V FEYDP N +RHT
Sbjct: 180 PIGKGNPTVPPILIAKMGKGQEIDVLCKAYKGIAKHHAKWSPLSTVAFEYDPYNKLRHTT 239
Query: 153 F----PKPDEWPKSEYSELDETQHEA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTV 207
+ EWP S + + + A P+++ A P+ ++F+ ES G++ ++V G+ +
Sbjct: 240 HWFETDERAEWPLSSNAAFEPPPNPAEPFDYNAVPSTFYFSAESVGSIPVRSVVEQGLDL 299
Query: 208 LKQKLSNL 215
L + L+N+
Sbjct: 300 LIEGLANV 307
>gi|405121028|gb|AFR95798.1| RNA polymerase II subunit 3 [Cryptococcus neoformans var. grubii
H99]
Length = 377
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 127/248 (51%), Gaps = 36/248 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V N+T L+DE IA R+GLIPL S V + Y+RDC C + C C V L
Sbjct: 63 IAIDQVLFMQNTTPLADEMIAHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLK 122
Query: 61 VKCVD---DQTRHVTTADLK--------------------STDARVVPVTSRNRDADMNE 97
V +Q VT+ L+ S + R++ NRD +M +
Sbjct: 123 VAFSGNDGEQFMRVTSDMLEVVPSPGGPPPPNPYGPPPELSEEDRII---INNRDPEMGQ 179
Query: 98 -YGETDD----ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL 152
G+ + ILI K+ KGQE+ + A KG K HAKW+P + V FEYDP N +RHT
Sbjct: 180 PIGKGNPTVPPILIAKMGKGQEIDVLCKAYKGIAKHHAKWSPLSTVAFEYDPYNKLRHTT 239
Query: 153 F----PKPDEWPKSEYSELDETQHEA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTV 207
+ EWP S + + + A P+++ A P+ ++F+ ES G++ ++V G+ +
Sbjct: 240 HWFETDERAEWPLSSNAAFETPPNPAEPFDYNAVPSTFYFSAESVGSIPVRSVVEQGLDL 299
Query: 208 LKQKLSNL 215
L + L+N+
Sbjct: 300 LIEGLANV 307
>gi|134112527|ref|XP_775239.1| hypothetical protein CNBE5120 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257891|gb|EAL20592.1| hypothetical protein CNBE5120 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 377
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/248 (33%), Positives = 127/248 (51%), Gaps = 36/248 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V N+T L+DE IA R+GLIPL S V + Y+RDC C + C C V L
Sbjct: 63 IAIDQVLFMQNTTPLADEMIAHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLK 122
Query: 61 VKCVD---DQTRHVTTADLK--------------------STDARVVPVTSRNRDADMNE 97
V +Q VT+ L+ S + R++ NRD +M +
Sbjct: 123 VTFSGNDGEQFMRVTSDMLEVVPSPGGPPPPNPYGPPPELSEEDRII---INNRDPEMGQ 179
Query: 98 -YGETDD----ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL 152
G+ + ILI K+ KGQE+ + A KG K HAKW+P + V FEYDP N +RHT
Sbjct: 180 PIGKGNPTVPPILIAKMGKGQEIDVLCKAYKGIAKHHAKWSPLSTVAFEYDPYNKLRHTT 239
Query: 153 F----PKPDEWPKSEYSELDETQHEA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTV 207
+ EWP S + + + A P+++ A P+ ++F+ ES G++ ++V G+ +
Sbjct: 240 HWFETDERAEWPLSSNAAFETPPNPAEPFDYNAVPSTFYFSAESVGSIPVRSVVEQGLDL 299
Query: 208 LKQKLSNL 215
L + L+N+
Sbjct: 300 LIEGLANV 307
>gi|298705011|emb|CBJ28486.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 262
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 94/154 (61%), Gaps = 11/154 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V + NS+VL DEF++ R+GLIPL +D V + Y+ DC C D+C +CS FTLD
Sbjct: 45 MAIDLVTIHDNSSVLQDEFLSHRLGLIPLAADPGV-QYEYNYDCDCEDYCDKCSAVFTLD 103
Query: 61 V----------KCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLR 110
V + + DQ HVT+ADL S+D R+ V D ++ + I+I KL
Sbjct: 104 VSWDKKALGRPEHMQDQPVHVTSADLVSSDPRLRAVHFAPSDQTNSDISQDAGIIIAKLA 163
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
KGQ ++L A AKKG KEHAKW+P A ++++P
Sbjct: 164 KGQRMQLTAVAKKGIAKEHAKWSPVAVATYKFEP 197
>gi|301093788|ref|XP_002997739.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Phytophthora
infestans T30-4]
gi|262109988|gb|EEY68040.1| DNA-directed RNA polymerase II 36 kDa polypeptide A [Phytophthora
infestans T30-4]
Length = 241
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 92/150 (61%), Gaps = 11/150 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD----RILYSRDCTCVDFCSECSVE 56
+AID V +E N++V++DEF+A R+G+IPL D ++ R +YS+DC C + C CSVE
Sbjct: 45 LAIDLVSIEINTSVMTDEFLAHRLGMIPLNFDGGLENFRQRFVYSQDCDCDENCPNCSVE 104
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD--ILIVKLRKGQE 114
FTLDV D VT+ LKS+D + PV + + E T D ++I KL GQ
Sbjct: 105 FTLDVT-ADSGVLSVTSEALKSSDPYIRPVNFSSEE----ELNNTQDSGVIIAKLGPGQR 159
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
LRL A AK G GKEHAKW+P A + YDP
Sbjct: 160 LRLSAIAKLGIGKEHAKWSPVAVATYMYDP 189
>gi|396081532|gb|AFN83148.1| DNA-directed RNA polymerase II subunit Rpb3 [Encephalitozoon
romaleae SJ-2008]
Length = 240
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 32/222 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL DE +A R+GL+P+ S + Y +C+C FCSECSV F +D
Sbjct: 40 IAIDMVEIERNNTVLPDEVLAHRLGLVPIYSKR---ELKYKEECSCSGFCSECSVVFEID 96
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ +D R V+ D+ + VV + +I KL + Q L+ R
Sbjct: 97 IVHTEDALRVVSARDIVCDEGDVVIKSGP---------------MITKLARDQGLKARCI 141
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEAPY 176
+KG GK HAKW+P + + FEYD DN R T + +EWP + E + Q
Sbjct: 142 GRKGIGKIHAKWSPVSAISFEYDKDNVRRETNYWFEESIEEEWPGVKQGEANPMQ----- 196
Query: 177 NWEAKPNKYFFNVESA-GALKPENIVIMGVTVLKQKLSNLQT 217
K +K VE G P IV+ G+ +LK+K++ L +
Sbjct: 197 ----KVDKIHMCVEVIEGGAGPIAIVLEGLKILKEKIAALAS 234
>gi|401826632|ref|XP_003887409.1| DNA-directed RNA polymerase II subunit RPB3 [Encephalitozoon hellem
ATCC 50504]
gi|395459927|gb|AFM98428.1| DNA-directed RNA polymerase II subunit RPB3 [Encephalitozoon hellem
ATCC 50504]
Length = 240
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 32/222 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL DE +A R+GL+P+ S + Y +C C FCSECSV F +D
Sbjct: 40 IAIDMVEIERNNTVLPDEVLAHRLGLVPIYSKR---SLKYKEECGCSGFCSECSVVFEID 96
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V +D R V+T D+ + VV + +I KL + Q L+ R
Sbjct: 97 VVHTEDTLRAVSTRDIICDEEDVVIKSGP---------------IITKLARDQGLKARCI 141
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEAPY 176
+KG GK H+KW+P + + FEYD DN R T + +EWP + E + Q
Sbjct: 142 GRKGIGKTHSKWSPVSAISFEYDKDNIRRETDYWFEESIEEEWPGVKQGEANPMQ----- 196
Query: 177 NWEAKPNKYFFNVESA-GALKPENIVIMGVTVLKQKLSNLQT 217
K +K VE G P +V+ G+ +LK+K++ L +
Sbjct: 197 ----KVDKIHMCVEVVEGGAGPLAVVLEGLRILKEKIAGLAS 234
>gi|66362260|ref|XP_628094.1| RNA polymerase II B3 subunit [Cryptosporidium parvum Iowa II]
gi|46227424|gb|EAK88359.1| RNA polymerase II B3 subunit [Cryptosporidium parvum Iowa II]
Length = 355
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 140/280 (50%), Gaps = 6/280 (2%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N++VL DEFI R+GLIPL S + D R C C + C++CSVE+ LD
Sbjct: 48 LAIDLVTMIDNTSVLHDEFIVHRMGLIPLDSTNIRDFNFKDR-CECQERCNKCSVEYLLD 106
Query: 61 VKCVDDQTRHVTTADLKST-DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V C TR+VT D++ + +VP+ +D ++ G + ILI KL GQ + +R
Sbjct: 107 VTCEGGATRNVTHYDIQPVATSTLVPMPVPKKDDSVD--GMNNGILIAKLGPGQRIAMRM 164
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
A KG GK HAKW P + F + D + ++L + E A
Sbjct: 165 TACKGIGKFHAKWIPVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGST 224
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH-DRVFYVINEAPYNWEAK 238
+K +Y N SA + K + + + V+ K + + + + IN + K
Sbjct: 225 SK-TEYALNKNSAYSTKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPVLIRVDTK 283
Query: 239 PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 278
P+K+ F VES GAL E+IV + +L++KL+ L +A
Sbjct: 284 PDKFHFLVESTGALPVESIVELAFEILQEKLNTLSRGVAR 323
>gi|321259555|ref|XP_003194498.1| RNA polymerase II subunit 3 [Cryptococcus gattii WM276]
gi|317460969|gb|ADV22711.1| RNA polymerase II subunit 3, putative [Cryptococcus gattii WM276]
Length = 377
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 126/248 (50%), Gaps = 36/248 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V N++ L+DE IA R+GLIPL S V + Y+RDC C + C C V L
Sbjct: 63 IAIDQVLFTQNTSPLADEMIAHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLK 122
Query: 61 VKCVD---DQTRHVTTADLK--------------------STDARVVPVTSRNRDADMN- 96
V +Q VT+ L+ S + R++ NRD +M
Sbjct: 123 VTFSGNDGEQFMRVTSDMLEVVPSPGGPPPPNPYGPPPELSEEDRII---INNRDPEMGL 179
Query: 97 EYGETDD----ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL 152
G+ + ILI K+ KGQE+ + A KG K HAKW+P + V FEYDP N +RHT
Sbjct: 180 PCGKGNPSIPPILIAKMGKGQEIDVLCKAYKGIAKHHAKWSPLSTVAFEYDPYNKLRHTT 239
Query: 153 F----PKPDEWPKSEYSELDETQHEA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTV 207
+ EWP S + + + A P+++ A P+ ++F+ ES G++ ++V G+ +
Sbjct: 240 HWFETDERAEWPLSSNAAFETPPNPAEPFDYNAVPSTFYFSAESVGSIPVRSVVEQGLDL 299
Query: 208 LKQKLSNL 215
L + L+N+
Sbjct: 300 LIEGLANV 307
>gi|348687896|gb|EGZ27710.1| hypothetical protein PHYSODRAFT_554134 [Phytophthora sojae]
Length = 242
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 92/150 (61%), Gaps = 11/150 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD----RILYSRDCTCVDFCSECSVE 56
+AID V +E N++V++DEF+A R+G+IPL D ++ R +YS DC C + C CSVE
Sbjct: 45 LAIDLVSIEINTSVMTDEFLAHRLGMIPLNFDGGLENFRQRFVYSADCDCDENCPNCSVE 104
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD--ILIVKLRKGQE 114
F+LDV D+ VT+ LKS+D + PV + + E T D ++I KL GQ
Sbjct: 105 FSLDVT-ADNGVLSVTSEALKSSDPYIRPVNFSSEE----ELNNTQDSGVIIAKLGPGQR 159
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
LRL A AK G GKEHAKW+P A + YDP
Sbjct: 160 LRLSAIAKLGIGKEHAKWSPVAVATYMYDP 189
>gi|388522223|gb|AFK49173.1| unknown [Lotus japonicus]
Length = 237
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 116/224 (51%), Gaps = 46/224 (20%)
Query: 40 YSRDCTCVDF---CSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVT---SRNRDA 93
+SRDC D C CSVEF L VKC+ D+T VT+ DL S+D VVPV + D+
Sbjct: 5 FSRDCDACDGDGQCEFCSVEFHLRVKCMTDETLDVTSKDLYSSDHTVVPVDFSPDTSSDS 64
Query: 94 DMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----DNSM 148
+N+ I+IVKLR+GQELRLRA A+KG GK+HAKW+P A V F Y+P D+ M
Sbjct: 65 AVNK-----GIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVSFMYEPEIHINDDLM 119
Query: 149 RHTLFPKPDEWPKS---------------------EYSELDETQHEAPYNWE-------A 180
+ EW +S YS DE +A + A
Sbjct: 120 ETLTLKEKKEWVESCPTHVFDIDANTQKVYVHEAENYSYDDEVIKKAEAMGKPGLVEITA 179
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRV 224
K + + F VE+ GA+K +V+ + +LKQKL + +L+ D V
Sbjct: 180 KQDSFIFIVETTGAVKASQLVLNAIEILKQKLDAV--RLSEDTV 221
>gi|209881574|ref|XP_002142225.1| DNA-directed RNA polymerase II subunit RPB3 [Cryptosporidium muris
RN66]
gi|209557831|gb|EEA07876.1| DNA-directed RNA polymerase II subunit RPB3, putative
[Cryptosporidium muris RN66]
Length = 348
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 138/290 (47%), Gaps = 32/290 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N++VL DEFI R+GL+P+ S ++ D R C C + C++CSV++TLD
Sbjct: 47 LAIDLVTIIDNTSVLHDEFIVHRLGLLPIDSRQIRDFNFKDR-CGCQERCNKCSVDYTLD 105
Query: 61 VKCVDDQTRHVTTADLKST---DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
+KC R+VT D+ ST +PV + D N G ILI KL GQ L
Sbjct: 106 LKCEGPTVRNVTHLDIYSTLPVPNIPLPVPRKEDVTDPNNEG----ILIAKLGPGQSLTA 161
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPD-----NSMRHTLFPKPDE----WPKSEYSELD 168
R A KG GK HAKW P A F + D +SM + E PK+ + L
Sbjct: 162 RMTATKGIGKFHAKWIPVATATFTNEADIRINQSSMTNVSLKHRREIVNSCPKNVFG-LS 220
Query: 169 ETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVI 228
++ E + KP + N+ L + + V N L + I
Sbjct: 221 ASKSE--FGMFDKPVEKSTNIPDIEVLNSSDCIFCNECV------NTCRNLGY------I 266
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 278
N + KP+K+ F VES GA+ E I+ M + +L++KL NL +A
Sbjct: 267 NPPLIRVDTKPDKFHFVVESTGAMPAEQIIEMALEILQEKLQNLGRSVAR 316
>gi|392574290|gb|EIW67427.1| hypothetical protein TREMEDRAFT_45370 [Tremella mesenterica DSM
1558]
Length = 361
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 30/241 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ ID V N++ + DE +A R+G++PL S V + + DC C + C C+V L
Sbjct: 63 VCIDQVLFAQNTSPIPDEMLAHRLGMVPLISRNVSKGLRRTSDCDCDEGCYYCTVTLRLK 122
Query: 61 VKCVDDQ----------------TRHVTTADLKSTDARVVPVTSRNRDADMNE-YGETDD 103
V + + DL D +V+ NRD ++ + G+ D
Sbjct: 123 VSYTHGERGKFMPITSNMLEVVPNPYGPPPDLSPDDQQVI----NNRDPELGQPVGKNDP 178
Query: 104 ----ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PK 155
IL+ KL +GQE+ L A G K HAKW+P + V FEYDP N +RHT + +
Sbjct: 179 ATPPILLAKLSRGQEIDLTCKAYSGIAKFHAKWSPLSAVAFEYDPHNKLRHTTYWYETDE 238
Query: 156 PDEWPKSEYSELD-ETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSN 214
EWP S + + Q + P+++ A P+ ++ N E GA+ +V G+ +L + L+N
Sbjct: 239 KAEWPLSANAAFEAPPQPDEPFDFNAVPSTFYLNAEGVGAVPVREVVEQGIDILVENLAN 298
Query: 215 L 215
+
Sbjct: 299 V 299
>gi|145342475|ref|XP_001416207.1| DNA-directed RNA polymerase II subunit 3 [Ostreococcus lucimarinus
CCE9901]
gi|144576432|gb|ABO94500.1| DNA-directed RNA polymerase II subunit 3 [Ostreococcus lucimarinus
CCE9901]
Length = 318
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 136/286 (47%), Gaps = 40/286 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS---DEVVDRILYSRDCTCVDFCSECSVEF 57
++ID V++ NS+VL DEF+A R+GLIPL S E+V Y+ D + V
Sbjct: 47 VSIDLVEVIENSSVLCDEFLAHRLGLIPLDSTKASELVKPYEYTGDDD-----TATDVHL 101
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
L+V+C DQTR VT+ DL S D RV PV+ + G ILI KLRK Q+L L
Sbjct: 102 ELNVRCQSDQTRDVTSDDLISHDERVKPVSFGGTGGGSAKSG---GILIAKLRKNQQLSL 158
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYN 177
+ A+KG GK+HAKW+P A F+Y P + H L + ++ + +H A
Sbjct: 159 KCIARKGTGKDHAKWSPVATAVFKYTPLIDINHGLLNSLNGKSQTRILYHNFKRHNAGPE 218
Query: 178 ----WEAKPNKYF---FNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINE 230
E+ P+K F + ++ PE+ G V +NE
Sbjct: 219 KAAIVESDPSKMFKYDADTDTFTLTSPESCTYDG------------------EVMKKVNE 260
Query: 231 --APYNWEAKPNK--YFFNVESAGALKPENIVIMGVTVLKQKLSNL 272
P + +P + F VES G LK E +V+ V +L+ KL +
Sbjct: 261 LGKPGLIDVRPGLDCFTFIVESTGVLKVEEVVLQAVHILQSKLDTI 306
>gi|71031829|ref|XP_765556.1| DNA-directed RNA polymerase II [Theileria parva strain Muguga]
gi|68352513|gb|EAN33273.1| DNA-directed RNA polymerase II, putative [Theileria parva]
Length = 354
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/290 (28%), Positives = 144/290 (49%), Gaps = 30/290 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++VL DE+I+ R+GL+P+ S + + C C D C++C+V++TLD
Sbjct: 48 LAIEIVTVLENTSVLHDEYISHRLGLLPIDS-TLASEFEFRDRCQCTDKCAKCTVDYTLD 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRD-----ADMNEY-GETDDILIVKLRKGQE 114
V C D +R VT D+ D + +N AD+ + G TD I IVKL++G
Sbjct: 107 VSCKDSDSRVVTHFDIVPDDTHSKSIYGKNLPMPIPRADVTNFNGATDGIPIVKLKRGHS 166
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS--------E 166
+ ++ A KG GK HAKW A V ++ +P S +L + K+ + +
Sbjct: 167 INMKLTASKGLGKFHAKWI-VANVNYKMEPRFSFNSSLMEQLSSEEKAGIAASCPRNVFK 225
Query: 167 LDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFY 226
+ EAP P+ F +++AG ++V + + N +L H +
Sbjct: 226 YTGVRSEAPSFL--GPSDKTFKLDAAGL----HVVDKLACIYCDECINYCRELGHKDLIR 279
Query: 227 VINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ + +K+ F +ES GA+ PE I+ + + VL++KL +LQ+
Sbjct: 280 I--------QPDESKFHFTIESTGAIPPEKILEIALVVLEKKLQDLQSNF 321
>gi|238599273|ref|XP_002394835.1| hypothetical protein MPER_05213 [Moniliophthora perniciosa FA553]
gi|215464510|gb|EEB95765.1| hypothetical protein MPER_05213 [Moniliophthora perniciosa FA553]
Length = 182
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 101/176 (57%), Gaps = 17/176 (9%)
Query: 43 DCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLK-STDARVV------PVTSRNRD--- 92
DCTC +C CS+ L+V C D T +T+ L+ TD V ++ R D
Sbjct: 1 DCTCTSYCPYCSITLLLNVSCPDAVTMDITSNHLEVQTDIDVGLDEPGEELSKRTPDFGH 60
Query: 93 -ADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT 151
N+ G +LI K+RKGQEL+L+ AKKG KEHAKW+P + V FEYDP N +RHT
Sbjct: 61 PVGKNKLG-AQPVLICKIRKGQELKLKCVAKKGIAKEHAKWSPCSAVAFEYDPYNKLRHT 119
Query: 152 LF----PKPDEWPKSEYSELDE-TQHEAPYNWEAKPNKYFFNVESAGALKPENIVI 202
+ + EWP SE +E + + +N+ AKP K++F+VE+ G+L P+ +V+
Sbjct: 120 SYWFETDERAEWPVSENGREEEPPRDDEIFNYNAKPRKFYFDVETDGSLGPQEVVM 175
>gi|412990464|emb|CCO19782.1| DNA-directed RNA polymerase II subunit RPB3 [Bathycoccus prasinos]
Length = 298
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 121/256 (47%), Gaps = 44/256 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSE----CSVE 56
+AID V++ NS+VL DEFIA R+GL+PL SD D +L S ++ E +V
Sbjct: 43 VAIDLVEIVENSSVLCDEFIAHRLGLVPLVSDSASDYMLPS------EYVGEDEAKINVH 96
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
L VKC D T VTT L DA+ +PV D+D N+ E +LIVKLRK QEL
Sbjct: 97 LNLAVKCSSDHTLDVTTNHLICADAKFLPVNFHPIDSDSNKQ-EPPGVLIVKLRKNQELV 155
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE------LDET 170
++ A+KG GK+HAKW+P A ++ +P+ + L K + K E L
Sbjct: 156 VKCIARKGIGKDHAKWSPVATAVYKCEPELYLNEELTNKLTDREKLELVNSCPIPILRLN 215
Query: 171 QHEAPYNWE---------------------------AKPNKYFFNVESAGALKPENIVIM 203
QH E AK + + F +E G L+P IV+
Sbjct: 216 QHTKSLEIERNDSYAYDDECIKKAEEFGKGKIVEIKAKEDTFNFFLEGTGVLRPGRIVLH 275
Query: 204 GVTVLKQKLSNLQTQL 219
+L KL +++ L
Sbjct: 276 TFKILLSKLDSIKVGL 291
>gi|452821367|gb|EME28398.1| DNA-directed RNA polymerase II subunit C [Galdieria sulphuraria]
Length = 257
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 91/153 (59%), Gaps = 11/153 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTL 59
MAID + ++ N++ L DE +A R+GLIPLTS V D Y+RDC C D C CSV F L
Sbjct: 45 MAIDLIHMQVNTSSLHDELLAHRLGLIPLTSHRV-DEFEYTRDCPYCSDHCLHCSVTFEL 103
Query: 60 DVKCVDDQTRHVTTADLKSTDAR-------VVPVT-SRNRDADMNEYGETDDILIVKLRK 111
DV+C ++ VT+ DL + A V PV S + ++E + I++ KL K
Sbjct: 104 DVQCTEEAMT-VTSQDLVNKSAHESQLAASVQPVHFSGEYNPTLSEENGLNGIVLAKLAK 162
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
GQ ++L A AKKG GKEHAKW+P + ++ DP
Sbjct: 163 GQRIQLTAIAKKGVGKEHAKWSPVCTISYQTDP 195
>gi|294892119|ref|XP_002773904.1| conjugation stage-specific protein, putative [Perkinsus marinus
ATCC 50983]
gi|239879108|gb|EER05720.1| conjugation stage-specific protein, putative [Perkinsus marinus
ATCC 50983]
Length = 336
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 122/267 (45%), Gaps = 54/267 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V +E NS+ L DEF+A R+GL+P+ S EV D +DC C C C+V++TLD
Sbjct: 51 LAIDTVTIEENSSPLFDEFVAHRLGLLPINSKEV-DSYSDPKDCQCYSSCPNCTVKYTLD 109
Query: 61 VKCVDDQTRHVTTADLKSTDA--------RVVPVTSRNRDADMNEYGETDDILIVKLRKG 112
V D VT D++ D R +PV +R E + I+I KLR+
Sbjct: 110 VIAEDHGVTDVTHLDIQPVDQGTSIPESRRPLPVPLWDR-TKTEEENRRNGIVIAKLRRN 168
Query: 113 QELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE------ 166
Q+L + A+KG GK HAKWNPT V Y+P ++ + E+ K +E
Sbjct: 169 QQLTMHMEARKGVGKMHAKWNPTGTVAIRYEPVITIDRAI-----EYEKLSVAERKAIVR 223
Query: 167 -------------------------LDETQHEAPYNWEAK--------PNKYFFNVESAG 193
DE +A Y+++AK + F VES G
Sbjct: 224 SCPKRVLDLDAADRIQVVRKDLCDFCDECVTKANYDFKAKGMITVKQRTDVVHFTVESTG 283
Query: 194 ALKPENIVIMGVTVLKQKLSNLQTQLA 220
A PE+IV+ + V K+K L L
Sbjct: 284 ARPPEDIVMAAIKVFKEKWIRLHEDLG 310
>gi|162606468|ref|XP_001713264.1| DNA-directed RNA polymerase II [Guillardia theta]
gi|12580730|emb|CAC27048.1| DNA-directed RNA polymerase II [Guillardia theta]
Length = 299
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 138/286 (48%), Gaps = 47/286 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V +E N++ DEFIA R+GLIP+ S E D I YSR+C C + C +CS+ FTLD
Sbjct: 37 LAIDKVYIEKNTSSFKDEFIAHRLGLIPIFS-ENADLIKYSRECDCENECEKCSILFTLD 95
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR---NRDADMNEYGETDD--ILIVKLRKGQEL 115
V ++T T+ + P+ + N + Y DD I+I KL GQ +
Sbjct: 96 VHA--NETEKTITSSMVKCSTACYPLKTFFIINNSGNSRNY---DDYAIIIAKLNPGQNI 150
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDP---------DNSMRHTLFPKPDEWPKSEYSE 166
+L+AY KKG GKEH+KWNP + + F + P ++R + K + + K
Sbjct: 151 KLKAYVKKGIGKEHSKWNPISSIKFRFYPIYQVNIFEMKKNLRPDILNKLENFIKDGIKN 210
Query: 167 LDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFY 226
D +E +++ N+++ ++ +++ ++ NL+
Sbjct: 211 SDLCYNEKNSDYKC------INLDNERKIEL-------LSIFEKNYLNLE---------- 247
Query: 227 VINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 272
E Y E N FF +E+ G + P N++ + LKQKL+ L
Sbjct: 248 ---EYIYISENDANVEFF-IETTGVINPLNLINKSLIYLKQKLNIL 289
>gi|308800116|ref|XP_003074839.1| Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) [Ostreococcus
tauri]
gi|119358805|emb|CAL52099.2| Rpb3 DNA-directed RNA polymerase II subunit 3 (IC) [Ostreococcus
tauri]
Length = 301
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 126/252 (50%), Gaps = 38/252 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++ NS+VL DEF+A R+GLIPL+S +V + L+ + S V L+
Sbjct: 47 LAIDLVEVVENSSVLCDEFLAHRLGLIPLSSKKVSE--LFKPYEYMGEDDSATDVHLELN 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C+ +Q VT+ D+ S D RV P+T + +D + G ILIVKLR Q+L L+
Sbjct: 105 VRCLTEQAMDVTSEDMVSYDERVKPITFQGTVSDAAKPG---GILIVKLRNKQQLLLKCI 161
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQ---HEAPYN 177
A+KG GK+HAKW+P A F++DP + L K E D +Q ++A +
Sbjct: 162 ARKGTGKDHAKWSPVATAVFKHDPVVHVNQELLKTLSGSDKRAIVESDPSQMFKYDADLD 221
Query: 178 ----------------------------WEAKP--NKYFFNVESAGALKPENIVIMGVTV 207
+ +P + + F+VES G L E IV+ V +
Sbjct: 222 TISLTSTGSCTFDGEIVKKVNEMGKHGLIDIRPCFDSFTFHVESTGVLDAEEIVLQAVHI 281
Query: 208 LKQKLSNLQTQL 219
L+ KL + +L
Sbjct: 282 LQTKLDTVGGEL 293
>gi|323454964|gb|EGB10833.1| hypothetical protein AURANDRAFT_22116 [Aureococcus anophagefferens]
Length = 324
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 127/267 (47%), Gaps = 56/267 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V E N++V++DE IA R+GL+P+ ++ R ++RDC C C C+ L
Sbjct: 52 MAIDLVTFEENTSVVNDEIIAHRLGLVPINDRDIRRRFRHTRDCDCDSHCDFCAATLKLH 111
Query: 61 VKCVDDQTRH-----------VTTADLKSTDARVVPV--TSRNRDADMNEYGETDDILIV 107
V DD+ + VTT DL S D V PV S+ ++ E G I +V
Sbjct: 112 VS-FDDRAKDLPEHEKNNPLTVTTLDLVSDDPDVAPVHFVSKREESTSQETG----IALV 166
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP----DNSMRHTLFPK-------- 155
KL KGQEL+L AK G GKEHAKW P + F P D++ L P
Sbjct: 167 KLAKGQELKLTCIAKLGCGKEHAKWIPVSKCVFRPVPEVTWDDAAVAELAPTLRDAIIQV 226
Query: 156 --------PDEWPKSEYSELDE-------------TQHEAPYNWE---AKPN--KYFFNV 189
D+ +S+ DE T+ P A+P+ + F+V
Sbjct: 227 CPAGVLGYADDRDRSKIEVKDEAAILDFADDIHALTKTLNPTGKSMLFARPSTTNFIFDV 286
Query: 190 ESAGALKPENIVIMGVTVLKQKLSNLQ 216
ES G++ +++V+ G+ LK+KL+NLQ
Sbjct: 287 ESLGSIPVDDVVLCGINELKRKLTNLQ 313
>gi|399949868|gb|AFP65525.1| DNA-directed RNA polymerase II [Chroomonas mesostigmatica CCMP1168]
Length = 304
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 124/259 (47%), Gaps = 52/259 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID + +E NS++ DEF+A R+GLIPL S E ++ Y+R+C C FCS+CSV F+LD
Sbjct: 42 MAIDLIFVEINSSIFHDEFLAHRLGLIPLFS-ESANQFRYTRECECEKFCSKCSVAFSLD 100
Query: 61 VKCVDDQTRHVTTADLKSTDAR-------VVPVTSRNRDADMNEYGETDDILIVKLRKGQ 113
V D+ R V + DL + + V P+ D+ ++ + ILI KL +GQ
Sbjct: 101 V-IAKDKYRDVFSTDLIVLNPKESFFAKHVSPI----HDSGTADFPRLEPILISKLSQGQ 155
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCFE-------------YDPDNSMRHTLFPKPDEWP 160
L+L AKKG G EHAKW+P + + + + + ++H L E
Sbjct: 156 RLKLIGVAKKGIGLEHAKWSPISIIRLKRQNTIYININDLNFMTETKIKHELVKNFPEIL 215
Query: 161 KSEYSELDETQHEA-----------------------PYN-WEAKPNKYFFN--VESAGA 194
K S + HE P + P+K F +ES GA
Sbjct: 216 KQNDSNQNLVYHEKKKFSLSVLTSQKLIDFLIKKKIDPKKVIKINPDKINFEIYIESTGA 275
Query: 195 LKPENIVIMGVTVLKQKLS 213
LKP+ I + +LK+K++
Sbjct: 276 LKPDFIFQNAIDILKKKIN 294
>gi|237834427|ref|XP_002366511.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|211964175|gb|EEA99370.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii ME49]
gi|221501508|gb|EEE27282.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii VEG]
Length = 484
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 134/293 (45%), Gaps = 51/293 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N++VL DE+I+ R+GL+P+ S V + + DC C D CS CSV++ LD
Sbjct: 189 LAIDLVTVYENTSVLHDEYISHRLGLLPIDSTRVAE-FVNRDDCDCADHCSRCSVQYALD 247
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRN-----------RDADMNEYGETDDILIVKL 109
V C D + VT D+ + +AR + S +M E E D I IVKL
Sbjct: 248 VVCERD-SLLVTHRDIVADNARGASLASAGFLDLGCPMPVPLLREMQEK-EMDGIPIVKL 305
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPK-PDE--------WP 160
RK Q + +R A KG GK HAKW+P A ++++P+ + L + P E P
Sbjct: 306 RKNQSVNMRMTATKGIGKVHAKWSPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCP 365
Query: 161 KSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+ +S +D+T G L+ EN M Q Q +L
Sbjct: 366 REVFSFIDDTA-----------------TGGTGVLRVEN--KMNCIFCDQCKVKAQ-ELG 405
Query: 221 HDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 273
R+ V E K+ F VES G + E IV M +L K++ L+
Sbjct: 406 FRRLVRV--------EPNERKFHFTVESTGVMPAEQIVEMAFDILLNKVTELE 450
>gi|221486200|gb|EEE24470.1| DNA-directed RNA polymerase II, putative [Toxoplasma gondii GT1]
Length = 484
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 134/293 (45%), Gaps = 51/293 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N++VL DE+I+ R+GL+P+ S V + + DC C D CS CSV++ LD
Sbjct: 189 LAIDLVTVYENTSVLHDEYISHRLGLLPIDSTRVAE-FVNRDDCDCADHCSRCSVQYALD 247
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRN-----------RDADMNEYGETDDILIVKL 109
V C D + VT D+ + +AR + S +M E E D I IVKL
Sbjct: 248 VVCERD-SLLVTHRDIVADNARGASLASAGFLDLGCPMPVPLLREMQEK-EMDGIPIVKL 305
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPK-PDE--------WP 160
RK Q + +R A KG GK HAKW+P A ++++P+ + L + P E P
Sbjct: 306 RKNQSVNMRMTATKGIGKVHAKWSPVATASYKFEPEIAFEEDLLARAPAEVKRQIAASCP 365
Query: 161 KSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+ +S +D+T G L+ EN M Q Q +L
Sbjct: 366 REVFSFIDDTA-----------------TGGTGVLRVEN--KMNCIYCDQCKVKAQ-ELG 405
Query: 221 HDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 273
R+ V E K+ F VES G + E IV M +L K++ L+
Sbjct: 406 FRRLVRV--------EPNERKFHFTVESTGVMPAEQIVEMAFDILLNKVTELE 450
>gi|67624207|ref|XP_668386.1| conjugation stage-specific protein [Cryptosporidium hominis TU502]
gi|54659581|gb|EAL38151.1| conjugation stage-specific protein [Cryptosporidium hominis]
Length = 355
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/279 (30%), Positives = 128/279 (45%), Gaps = 61/279 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N++VL DEFI R+GLIPL S + D R C C + C++CSVE+ LD
Sbjct: 48 LAIDLVTMIDNTSVLHDEFIVHRMGLIPLDSTNIRDFNFKDR-CECQERCNKCSVEYLLD 106
Query: 61 VKCVDDQTRHVTTADLKST-DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V C TR+VT D++ + +VP+ +D ++ G + ILI KL GQ + +R
Sbjct: 107 VTCEGGATRNVTHYDIQPVATSTLVPMPVPKKDDSVD--GMNNGILIAKLGPGQRIAMRM 164
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL--------------------FPKPDEW 159
A KG GK HAKW P + F + D + ++L F
Sbjct: 165 TACKGIGKFHAKWIPVSVATFTNEADVRINYSLSSNLTLKQRKEIVNCCPKDVFALGGNT 224
Query: 160 PKSEYS--------------ELDETQ-----------------------HEAPYNWEAKP 182
K+EY+ EL + + + A + KP
Sbjct: 225 SKTEYALNKNSTYSTKTKTEELPDLEVVSSKSCIFCNECVNLTKNYGYINPALIRVDTKP 284
Query: 183 NKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
+K+ F VES GAL E+IV + +L++KL+ L +A
Sbjct: 285 DKFHFLVESTGALPVESIVELAFEILQEKLNTLSRGVAR 323
>gi|84999910|ref|XP_954676.1| DNA-directed RNA polymerase ii [Theileria annulata]
gi|65305671|emb|CAI73996.1| DNA-directed RNA polymerase ii, putative [Theileria annulata]
Length = 354
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 142/295 (48%), Gaps = 30/295 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++VL DE+I+ R+GL+P+ S + + C C D C++C+V++TLD
Sbjct: 48 LAIEIVTVLENTSVLHDEYISHRLGLLPIDS-TLASEFEFRDRCQCTDKCAKCTVDYTLD 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRD-----ADMNEY-GETDDILIVKLRKGQE 114
V C D +R VT D+ D + +N AD+ + G TD I IVKL++GQ
Sbjct: 107 VSCNDSNSRLVTHFDIVPDDTHSKSIYGKNLPMPIPRADVTNFNGATDGIPIVKLKRGQS 166
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDET--QH 172
+ ++ A KG GK HAKW A V ++ +P S L ++ E + + + ++
Sbjct: 167 INMKLTASKGLGKFHAKW-IVANVNYKMEPRFSFNSALM---EQLSSDEKAGIAASCPRN 222
Query: 173 EAPYNWEAKPNKYFFNVE------SAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFY 226
Y N F AG L+ +V + + N +L H +
Sbjct: 223 VFKYTGVRSENPSFLGHSDKTFKLDAGGLQ---VVNKLDCIYCDECINYCRELGHKDLIR 279
Query: 227 VINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELS 281
+ + +K+ F +ES G++ PE I+ + + VL++KL +LQ+ S
Sbjct: 280 I--------QPDESKFHFTIESTGSIPPEKILEIALIVLEKKLQDLQSNFTEAQS 326
>gi|255082502|ref|XP_002504237.1| dna-directed RNA polymerase II polypeptide a [Micromonas sp.
RCC299]
gi|226519505|gb|ACO65495.1| dna-directed RNA polymerase II polypeptide a [Micromonas sp.
RCC299]
Length = 331
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 127/273 (46%), Gaps = 59/273 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL---YSRDCTCVDFCSECSVEF 57
+AID V++ NS+ L DEFIA R+GLIPL S + D Y+ D V V
Sbjct: 51 IAIDLVEVIENSSCLCDEFIAHRLGLIPLVSHKAADMEFPYDYAGDDETV-----TDVPI 105
Query: 58 TLDVKCVDDQTRHVTTADL-----KSTDARVVPV------------TSRNRDADMNEY-G 99
L VKCV DQT VT+ DL + V PV T+ AD ++ G
Sbjct: 106 ELRVKCVSDQTEDVTSNDLLINGDYTQYDTVKPVHYRPSGRAFGDATASGAPADGSQADG 165
Query: 100 ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW 159
+ ILI+KLRK QE+ +R A+KG G++HAKW P A + ++P+ ++ L E
Sbjct: 166 DKHPILILKLRKNQEINMRCVARKGVGRDHAKWQPVATAVYRFEPEITINEDLMATLTEE 225
Query: 160 PKSEYSEL---------DETQ-------HEAPYNWE-----------------AKPNKYF 186
K ++ E D+T+ Y+ E AK + +
Sbjct: 226 EKIKFVESSPTPVFRYNDQTRKVEVNMPESYTYDGECLKWAEDMGKPGLVDIRAKEDTFL 285
Query: 187 FNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
F VES GAL PE IV+ + VL KL +++L
Sbjct: 286 FTVESTGALPPETIVLNALKVLDTKLEMTKSEL 318
>gi|156097458|ref|XP_001614762.1| DNA-directed RNA polymerase II [Plasmodium vivax Sal-1]
gi|148803636|gb|EDL45035.1| DNA-directed RNA polymerase II, putative [Plasmodium vivax]
Length = 333
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 133/285 (46%), Gaps = 39/285 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N++ DEF+A R+GLIP+ S V + C C + CS+C++++ +
Sbjct: 50 LAIDVVNVYENTSPFHDEFLAHRLGLIPIDSTNV-KNFEFREKCKCKETCSKCTIQYLIQ 108
Query: 61 VKCVDDQTRHVTTADLKSTDARV-----VPVTSRNRDADMNEYGETDDILIVKLRKGQEL 115
VKC + +T D++S + VP+ RN N+ E++ I IV L K Q L
Sbjct: 109 VKCNNVSKIEITHHDIESVEHEPNVPMPVPLEDRN-----NQMAESNAIPIVTLSKNQTL 163
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAP 175
++ A KG GK HAKW P A V + D +++H L ++ E
Sbjct: 164 HMKLIATKGIGKMHAKWIP-ANVSYRIDHKVAIKHHL--------------INSLSREHK 208
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNW 235
NK + +++A A E + +L+ + + + +NE Y
Sbjct: 209 LLLANSLNKNCYVLKNAEAHDRE---------VSLRLNENMSVVMAESCIEFLNELGYKD 259
Query: 236 EAK----PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
K K+ F VES G++ PE +V M + +L+ KL L+ Q+
Sbjct: 260 VVKIIYDETKFHFKVESVGSMPPEQVVEMAIEILENKLKTLEPQI 304
>gi|403338254|gb|EJY68358.1| RNA polymerase II core subunit [Oxytricha trifallax]
Length = 329
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 120/259 (46%), Gaps = 41/259 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V++ N++ L DEFIA R+GLIP+ S +V D+ +S C C C CSV+F L
Sbjct: 74 MAIDLVEVVENTSALHDEFIAHRLGLIPMQSFDV-DKFQFSDKCACSSKCVNCSVQFKLH 132
Query: 61 VKCVDDQTRHVTTADLKS-TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
C D V T + +++ ++PV + ++ E D ILI+KL K Q+L +
Sbjct: 133 AVCSDRDQMEVNTRHINPLSESSIMPVHYVD-----SQGKEEDPILIMKLSKNQQLDMNL 187
Query: 120 YAKKGFGKEHAKWNPTAGV------CFEYDPDNSMRHTLFPKPDEW----PKSEYS---- 165
A+KG GK HAKW+ A E D D R K E+ P++ Y
Sbjct: 188 IARKGTGKLHAKWSSVATCQMRKEPIVEIDQDKINRDLDVQKRKEFVATCPRNVYKFNEM 247
Query: 166 ----ELDETQH----------------EAPYNWEAKPNKYFFNVESAGALKPENIVIMGV 205
E+++ + + K+ F VES G L PE+I+ +
Sbjct: 248 RNAVEIEDADKCILCIECVRFAQANGLDRAVKIAEREEKFIFTVESTGVLAPEDIITRAL 307
Query: 206 TVLKQKLSNLQTQLAHDRV 224
T+L KL +L + R+
Sbjct: 308 TILSHKLKSLADSMNKYRI 326
>gi|397615411|gb|EJK63419.1| hypothetical protein THAOC_15929 [Thalassiosira oceanica]
Length = 323
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 129/276 (46%), Gaps = 59/276 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIP--------LTSDEVVDRILYSRDCTCVDFCSE 52
+AID V+ NS+VL+DE+IA R+GLIP L + + R+C C D C
Sbjct: 45 LAIDLVEYHENSSVLNDEYIAHRLGLIPIRYSPDGTLKGGDCHQAFVPHRECVCYDRCPR 104
Query: 53 CSVEFTLDVK------CVDDQTRH----VTTADLKSTDARVVPVTSRNRDADMNEYGETD 102
CSVEF LDV +Q R VT+ DL + + +V P N + N + E
Sbjct: 105 CSVEFDLDVNFDKVNMSRPEQERDLPLTVTSRDLIANNVQVSPAHFLNEEEQDNAHDEG- 163
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH------TLFPK- 155
I IVKL +GQ LRL+A A+ G KEHAKW P A + + P+ ++ T+ K
Sbjct: 164 -ISIVKLGQGQHLRLKAIARMGISKEHAKWCPVAVATYRFWPEITINQEACNNLTMEQKQ 222
Query: 156 ------PDEW-----------PKSEYSELDETQHEAPYNWEA---KP------------N 183
PD P EL + Y +A +P +
Sbjct: 223 ELVDACPDRILELDEITGNLKPTEGAEELATFTEDLKYAQDAMKRRPEDDDYVQVTHSTD 282
Query: 184 KYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++ F+VES+GA+ E+I++ + VLK +L+ L ++
Sbjct: 283 RFLFSVESSGAMDAEDILLSSLRVLKDRLNYLAAEV 318
>gi|221054724|ref|XP_002258501.1| dna-directed rna polymerase II [Plasmodium knowlesi strain H]
gi|193808570|emb|CAQ39273.1| dna-directed rna polymerase II, putative [Plasmodium knowlesi
strain H]
Length = 334
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 133/285 (46%), Gaps = 39/285 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N++ DEF+A R+GLIP+ S V + C C + CS+C++++ +
Sbjct: 51 LAIDVVNVYENTSPFHDEFLAHRLGLIPIDSRNV-KNFEFREKCKCKETCSKCTIQYLIQ 109
Query: 61 VKCVDDQTRHVTTADLKSTDARV-----VPVTSRNRDADMNEYGETDDILIVKLRKGQEL 115
VKC + VT D++S + VP RN N+ +++ I IV L K Q L
Sbjct: 110 VKCNNVSKIDVTHYDIESVEHEPNVPMPVPFEDRN-----NKMAQSNAIPIVTLSKNQTL 164
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAP 175
++ A KG GK HAKW P A V + D S++H L ++ E
Sbjct: 165 HMKLIATKGIGKMHAKWIP-ANVSYRIDHKVSIKHHL--------------INSLSPEHK 209
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNW 235
NK + +++A A + + +L+ + + + V+NE Y
Sbjct: 210 LLLANSLNKDCYVLKNAEAHDRD---------MSLRLNENMSVVMAESCIEVLNELGYKD 260
Query: 236 EAK----PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
K K+ F VES G++ PE +V M + +L+ KL L+ Q+
Sbjct: 261 VVKIIYDETKFHFKVESVGSMPPEQVVEMAIEILENKLKTLEPQI 305
>gi|389583068|dbj|GAB65804.1| DNA-directed RNA polymerase II [Plasmodium cynomolgi strain B]
Length = 334
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 136/288 (47%), Gaps = 45/288 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N++ DEF+A R+GLIP+ S V + C C + CS+C++++ +
Sbjct: 51 LAIDVVNVYENTSPFHDEFLAHRLGLIPIDSRNV-KNFEFREKCKCKETCSKCTIQYLIQ 109
Query: 61 VKCVDDQTRHVTTADLKSTDARV-----VPVTSRNRDADMNEYGETDDILIVKLRKGQEL 115
VKC + +T D++S + VP RN N+ E++ I IV L K Q L
Sbjct: 110 VKCNNVSKIDITHYDIESVEHEPNVPMPVPFEDRN-----NKMAESNAIPIVTLSKNQTL 164
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAP 175
++ A KG GK HAKW P A V + D +++H L ++ E
Sbjct: 165 HMKLIATKGIGKMHAKWIP-ANVSYRIDHKVAIKHQL--------------INSLSVEHK 209
Query: 176 YNWEAKPNKYFFNVESAGA------LK-PENIVIMGVTVLKQKLSNLQTQLAHDRVFYVI 228
NK + +++A A LK EN+ + V+ + L +L + V +I
Sbjct: 210 LLLANSLNKNCYVLKNADAHDRDVSLKLNENMSV----VMAESCIELLNELGYKDVVKII 265
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ K+ F VES G++ PE +V M + +L+ KL L+ Q+
Sbjct: 266 YDE--------TKFHFKVESVGSMPPEQVVEMAIEILENKLKTLEPQI 305
>gi|449018304|dbj|BAM81706.1| RNA polymerase II third large subunit [Cyanidioschyzon merolae
strain 10D]
Length = 533
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 143/335 (42%), Gaps = 73/335 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF----------- 49
M+ID V + N + L DEF+A R+GL+PL SD + Y+RDC C
Sbjct: 66 MSIDLVTIYVNDSPLHDEFVAHRLGLVPLRSD-TAEYFNYNRDCDCTQSRIAALSGNPME 124
Query: 50 ---CSECSVEFTLDVKCVDD---QTRHVTTADLKSTDAR----------VVPVTSRNR-- 91
C +CSVE+ LDV C D + +VT+ L+ D R VVP+ ++
Sbjct: 125 ATNCEKCSVEYILDVTCPPDGELEEMNVTSRHLQ-MDPRYFDGPAYVRAVVPIHRPDQPW 183
Query: 92 ----DADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNS 147
D+ + I+I KLR+GQ L +R AKKG G+EHAKW+P A + DP S
Sbjct: 184 ELAPDSSRDRTSADAGIVICKLRRGQRLYVRCIAKKGTGREHAKWSPVAAASYRMDP--S 241
Query: 148 MRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMG--- 204
+R LD + A + E K GAL+ E V+ G
Sbjct: 242 VR-----------------LDLGRINAVLSSE---QKRLIVKMGGGALRVEANVVTGDVE 281
Query: 205 -----------VTVLKQKLSNLQTQL--AHDRVFYVINEAPYNWEAKPNKYFFNVESAGA 251
+ + L LQ L A F +I + + ++F +ES G
Sbjct: 282 IVEDEAYLRGRIEISNDCLRELQFALEEAGQNPFQLITLSRGSDAEGQRTFYFTLESTGV 341
Query: 252 LKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALA 286
L PE IV VL +K+ +L L E ++A
Sbjct: 342 LPPEAIVQSSFRVLIEKILSLVPCLRDEAESHSIA 376
>gi|219121575|ref|XP_002181139.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407125|gb|EEC47062.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 320
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 124/272 (45%), Gaps = 55/272 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIP--------LTSDEVVDRILYSRDCTCVDFCSE 52
+AID V+ NSTVL+DE+IA R+GLIP L + D L R+C C + C
Sbjct: 45 LAIDLVEFHENSTVLNDEYIAHRMGLIPVRYQPAESLKGSDCSDAFLPHRECVCYEHCMR 104
Query: 53 CSVEFTLDV--KCVDDQ----TRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILI 106
CSVEF LD+ K ++ VT+ DL S + V P ++D + + + + I
Sbjct: 105 CSVEFELDITYKVTGEEDVLAPLTVTSKDLVSNNELVQPAHFLSQDE--QDEAQDEGVAI 162
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----DNSMRHTLFPKPDEWPK 161
VKL GQ L+L+A A+ G KEHAKW P A + + P D M + E
Sbjct: 163 VKLGPGQRLKLKAIARMGISKEHAKWCPVAVATYRFWPEIHINDEQMATLTLEQKQELVD 222
Query: 162 S---EYSELDETQHE-------------------APYNWEAKP------------NKYFF 187
+ ELDE + A + +P +++ F
Sbjct: 223 TCPDRILELDEVTGDIRAVDNAWDICTYTEDLKFAQAAMKKRPEDDDFVTVTQSKDRFIF 282
Query: 188 NVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
NVE+ GA+ + I++ + VL+ +L+ L +L
Sbjct: 283 NVETTGAMDADEILLSAIRVLRNRLNYLAQEL 314
>gi|429328829|gb|AFZ80589.1| DNA-directed RNA polymerase II, putative [Babesia equi]
Length = 355
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 127/279 (45%), Gaps = 62/279 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++VL DE+I+ R+GL+P+ S + + C C D C++C+V++TLD
Sbjct: 48 LAIEIVTVLENTSVLHDEYISHRLGLLPIDS-TLASEFEFREKCQCSDKCAKCTVDYTLD 106
Query: 61 VKCVDDQTRHVT-------TADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQ 113
V C D ++ VT A++ S D R +P+ D N G TD I IVKL++GQ
Sbjct: 107 VSCDDADSKVVTHFDIIADEAEINSNDERKIPMPIPRADIS-NFNGATDGIPIVKLKRGQ 165
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP----------------------------- 144
+ ++ A KG GK HAKW A V ++ +P
Sbjct: 166 SISMKLTATKGLGKFHAKW-IVANVNYKMEPRFLFNSSLMEQISSEDKASIASSCPRNVF 224
Query: 145 ---DNSMRHTLFP--------KPDEWPKSEYSELD------------ETQHEAPYNWEAK 181
+ M HT K DE ++L+ E H E
Sbjct: 225 KFSGSRMDHTGISLGNSNSAIKLDEGGLQIINKLNCIYCDECINHARELGHRDLIRIEPD 284
Query: 182 PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+K+ F +ES G++ PE I+ + ++ L++K+ LQ A
Sbjct: 285 DSKFHFTIESTGSIPPEKILEIALSCLEEKMQGLQANFA 323
>gi|303281664|ref|XP_003060124.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458779|gb|EEH56076.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 333
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 124/276 (44%), Gaps = 62/276 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL---YSRDCTCVDFCSECSVEF 57
+AID V + N++ L DEFIA R+GLIPL S++ V+ Y+ D V V F
Sbjct: 50 LAIDLVDVIENTSCLCDEFIAHRLGLIPLLSEKAVEMEFPYDYAGDDESV-----TDVHF 104
Query: 58 TLDVK-CVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-----------DD-- 103
L+ C +T VT+ DL D RV PV ++ + G DD
Sbjct: 105 ELNTGICASAETVDVTSNDLVCYDPRVAPVNYHPGESIKGKGGAMEFEAQAAARGPDDGP 164
Query: 104 ----ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP--------------- 144
++IVKLR+GQ++ +R A+KG G++HAKW P A + ++P
Sbjct: 165 DIPGVVIVKLRRGQQINMRCVARKGVGRDHAKWQPVATATYRFEPEITINEELMATLTEE 224
Query: 145 ----------------DNSMRHTLFPKPDEWPKSEY-----SELDETQHEAPYNWEAKPN 183
D + R + PD+ Y + +E + AK +
Sbjct: 225 EKMAFVESSPTALFRYDEATRRVVVDAPDQARSYGYDGECLKKAEELGKPGLVDIRAKED 284
Query: 184 KYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+ F VES GAL+PE IV+ + VL++K+ + +L
Sbjct: 285 AFHFTVESTGALRPEEIVVNALKVLERKMEVTRGEL 320
>gi|146169387|ref|XP_001471367.1| DNA-directed rna polymerase II subunit [Tetrahymena thermophila]
gi|116575|sp|P16925.1|CNJC_TETTH RecName: Full=Conjugation stage-specific protein
gi|2654270|emb|CAA44194.1| RNA polymerase subunit [Tetrahymena thermophila]
gi|146145111|gb|EDK31657.1| DNA-directed rna polymerase II subunit [Tetrahymena thermophila
SB210]
Length = 310
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 135/285 (47%), Gaps = 38/285 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI V++ N++ L DE+IA R+GLIPL S +V D Y +C C C C++ F L
Sbjct: 42 IAIHNVKVYENTSSLPDEYIAHRLGLIPLNSAKV-DDYNYIWNCNCQGECDRCTIHFDLR 100
Query: 61 VKCVDDQTRHVTTADLKS----TD---ARVVPVTSRNRDADMNEYGETDD--ILIVKLRK 111
V ++ VT+ DLK TD R + V S RD EYG + I I+KL K
Sbjct: 101 VSNFTNEVLEVTSLDLKQRQDHTDEDAVRPIKVYSILRD----EYGNKREVGIPIIKLSK 156
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQ 171
GQ++ A+KG GK H+KWNP F +P+ +F + E LD Q
Sbjct: 157 GQQIHFECEAQKGIGKMHSKWNPVCISTFSVEPE-----IIFDQ-------EIQNLDIEQ 204
Query: 172 HEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEA 231
+A N A P K F L+ ++ M ++ + ++ +
Sbjct: 205 KKALVN--ACPTKVFGINPHTNTLEVQDH--MKCMYCEECVYKCAEDFQKPKLIKI---- 256
Query: 232 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ K +K+FF VE+ G +KP ++ G + L+QKL ++ Q+
Sbjct: 257 ----DHKKDKFFFKVETTGVMKPVEVLRRGFSTLRQKLDFMREQI 297
>gi|401404694|ref|XP_003881797.1| hypothetical protein NCLIV_015560 [Neospora caninum Liverpool]
gi|325116211|emb|CBZ51764.1| hypothetical protein NCLIV_015560 [Neospora caninum Liverpool]
Length = 514
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 135/301 (44%), Gaps = 58/301 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N++VL DE+I+ R+GL+P+ S V + + DC C D C CSV++ LD
Sbjct: 200 LAIDLVTVYENTSVLHDEYISHRLGLLPIDSTRVAE-FVNREDCDCADHCPRCSVQYALD 258
Query: 61 VKCVDDQTRHVTTADLKSTDA-RVVPVTSRNRDADMN-----------EYGETDDILIVK 108
V C +D + VT D+ + +A R + D++ + E D I IVK
Sbjct: 259 VVCQND-SLLVTHRDIVADNAGRGTALAPGGGFLDLSCPMPVPLPREMQQKEMDGIPIVK 317
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH-TLFPKPDE--------W 159
LR+ Q + +R A KG GK HAKW+P A ++++P+ S L P E
Sbjct: 318 LRRNQSVNMRMTAIKGMGKLHAKWSPVATASYKFEPEISFEEDQLARAPAEVKRQIAASC 377
Query: 160 PKSEYSELDET-------------------------QHEAPYN--WEAKPN--KYFFNVE 190
P+ ++ +D+T + Y +PN K++F VE
Sbjct: 378 PRDVFAFIDDTATGGNGMLRVENKINCIYCDQCKIKAQDLGYRKLVRVEPNERKFYFTVE 437
Query: 191 SAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNWEAKPNK-YFFNVESA 249
S G + E IV M +L K++ L +A A + + P N ESA
Sbjct: 438 STGVMPAEQIVEMAFDILLNKVTELDGLVAQ-----ASTRATGHLRSSPGAPGLGNAESA 492
Query: 250 G 250
G
Sbjct: 493 G 493
>gi|70945964|ref|XP_742745.1| DNA-directed RNA polymerase II [Plasmodium chabaudi chabaudi]
gi|56521898|emb|CAH80621.1| DNA-directed RNA polymerase II, putative [Plasmodium chabaudi
chabaudi]
Length = 331
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 126/275 (45%), Gaps = 53/275 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A+D V + N++ DEFIA RIGLIP+ S + R C C + CS C+V++ ++
Sbjct: 47 LAVDIVNVYENTSPFHDEFIAHRIGLIPIDSRNIKSYEFRER-CKCKETCSRCTVQYIIE 105
Query: 61 VKCVDDQTRHVTTADLKSTDARV---VPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
VKC + V+ D+++ D +P+ + N+ ++++ I IV L K Q L +
Sbjct: 106 VKCNNANKIDVSHYDIEALDHEPNIPMPIPNDNKHNNIDKMDTA--IPIVTLSKNQTLHM 163
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSE-------------- 163
+ A KG GK HAKW P A V + D + H P+ D+ PK
Sbjct: 164 KLTATKGIGKMHAKWIP-ANVSYIIDHKIVINH---PEVDKMPKEHKLIIANNLNPDCYI 219
Query: 164 YSELD----------------------ETQHEAPYNWEA-----KPNKYFFNVESAGALK 196
E+D +T E YN + K+ F VES G++
Sbjct: 220 LKEMDDDRDVELQLSENMSVVMAESCRDTLTELGYNKDIVKVIYDETKFHFKVESVGSMP 279
Query: 197 PENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEA 231
PE IV M + +L+ KL +L+ Q+ FY I E
Sbjct: 280 PEQIVEMAIEILESKLKDLEPQIKAS--FYSIEEV 312
>gi|403220422|dbj|BAM38555.1| DNA-directed RNA polymerase II [Theileria orientalis strain
Shintoku]
Length = 354
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 139/290 (47%), Gaps = 28/290 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++VL DE+I+ R+GL+P+ S + + C C D C+ C+V++TLD
Sbjct: 48 LAIEIVTVLENTSVLHDEYISHRLGLLPIDS-TLASEFEFRDKCQCTDKCARCTVDYTLD 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRN------RDADMNEYGETDDILIVKLRKGQE 114
V C D +R VT D+ +++ + +N R N G TD I IVKL++G
Sbjct: 107 VSCNDSDSRVVTHFDIVPDESQSQSIYGKNLPMPIPRADATNFNGGTDGIPIVKLKRGHS 166
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEA 174
+ ++ A KG GK HAKW V ++ +P S ++ ++ E + + +
Sbjct: 167 INMKLTATKGLGKFHAKW-IVGNVNYKMEPRFSFNSSIM---EQLTSEEKAGIAASCPRG 222
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQ-------KLSNLQTQLAHDRVFYV 227
+ + + + S+ K + + G+ V + + N +L H + +
Sbjct: 223 VFKYTGVRSDMEPGLGSSD--KSFKLNVGGLQVANKLNCIYCDECINYCRELGHKDLIRI 280
Query: 228 INEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 277
+ +K+ F +ES G++ PE I+ + + L++KL +L + A
Sbjct: 281 --------QPDESKFHFTIESTGSIPPEKILDIALLCLEKKLQDLHSNFA 322
>gi|240278194|gb|EER41701.1| RNA polymerase II subunit 3 [Ajellomyces capsulatus H143]
Length = 333
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 84/125 (67%), Gaps = 5/125 (4%)
Query: 100 ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD-- 157
E +I KLR+GQE+++ AKKG KEHAKW PTA V FEYDP N+++H + +
Sbjct: 4 EGKGPVICKLRRGQEIKMTCIAKKGIAKEHAKWAPTAAVGFEYDPHNNLKHVDYWYEEDP 63
Query: 158 --EWPKSEYSELDET-QHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSN 214
EWP S +E + + Q + P++++A+P+ ++ +VES G L+P+ IV G+TVL++KL+
Sbjct: 64 IKEWPISANAEWETSAQPDMPFDYDAQPSTFYIDVESIGNLEPDAIVQQGITVLQRKLAE 123
Query: 215 LQTQL 219
+ + L
Sbjct: 124 IISAL 128
>gi|325958565|ref|YP_004290031.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. AL-21]
gi|325329997|gb|ADZ09059.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. AL-21]
Length = 262
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 109/236 (46%), Gaps = 46/236 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V++ N + DE +A R+GL+PL +D ++ ++ + DC C D+C CSV L
Sbjct: 39 MAIETVEILKNDAKIFDEALAHRLGLVPLKTD--LESMVLASDCDCEDYCPTCSVTLLLK 96
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
K + V + DL+S D VVPV D I ++KL++GQE+ L A
Sbjct: 97 EK----GPKTVYSGDLQSQDPDVVPVH--------------DTIPLLKLKEGQEVELIAV 138
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDP----DNSMRHTLFPKPDEWPKSEYSELDETQH---- 172
AK G G EH+KW PT ++Y P D+ + E P++ Y E DE +
Sbjct: 139 AKLGIGLEHSKWQPTTTCAYKYYPKITIDSDKCESCGLCASECPRAVY-EFDEKANTLEI 197
Query: 173 -----------------EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 211
E + KY F +E+ G+L PE ++ +L K
Sbjct: 198 VDIENCSMCKTCVRGCEAGAITVEGEKGKYLFTIETDGSLSPEKVLTTACEILSSK 253
>gi|323508505|dbj|BAJ77146.1| cgd1_2710 [Cryptosporidium parvum]
Length = 252
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N++VL DEFI R+GLIPL S + D R C C + C++CSVE+ LD
Sbjct: 48 LAIDLVTMIDNTSVLHDEFIVHRMGLIPLDSTNIRDFNFKDR-CECQERCNKCSVEYLLD 106
Query: 61 VKCVDDQTRHVTTADLKST-DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V C TR+VT D++ + +VP+ +D ++ G + ILI KL GQ + +R
Sbjct: 107 VTCEGGATRNVTHYDIQPVATSTLVPMPVPKKDDSVD--GMNNGILIAKLGPGQRIAMRM 164
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL 152
A KG GK HAKW P + F + D + ++L
Sbjct: 165 TACKGIGKFHAKWIPVSVATFTNEADVRINYSL 197
>gi|406698967|gb|EKD02188.1| RNA polymerase II subunit 3 [Trichosporon asahii var. asahii CBS
8904]
Length = 378
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 29/244 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V N++ + DE +A R+G++PL S +V + Y+RDC C + C C V L
Sbjct: 64 LAIDQVSFYQNTSPIPDEMLAHRLGMVPLISRDVGKGLRYTRDCDCDEGCYYCMVTLRLK 123
Query: 61 VKCVDDQ---TRHVTTADLKSTDARVVPVTSR-NRDADMNE----------------YGE 100
V V+ + VT+ L+ + P S D+ E G+
Sbjct: 124 VSAVNREYGSPMAVTSDMLEVIPSPNTPQQSPYGPPPDIGEEERELIAHHDPELGVPVGK 183
Query: 101 TDD----ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF--- 153
D I + ++ +GQE+ + A KG K HAKW+P + V +EYDP N +RHT +
Sbjct: 184 GDPTASPIQLARISRGQEIEVVCKAYKGIAKHHAKWSPLSAVAYEYDPYNKLRHTDYWFE 243
Query: 154 -PKPDEWPKSEYSELDETQH-EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 211
EWP S + + + P+++ A P+ Y+ ES G++ ++ ++ +
Sbjct: 244 TDAAAEWPLSANANFETPPNPNEPFDFNAVPSTYYMTAESVGSVPVRSVFEQACDIMVEN 303
Query: 212 LSNL 215
L+ +
Sbjct: 304 LAQV 307
>gi|401889280|gb|EJT53216.1| RNA polymerase II subunit 3 [Trichosporon asahii var. asahii CBS
2479]
Length = 378
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 29/244 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V N++ + DE +A R+G++PL S +V + Y+RDC C + C C V L
Sbjct: 64 LAIDQVSFYQNTSPIPDEMLAHRLGMVPLISRDVGKGLRYTRDCDCDEGCYYCMVTLRLK 123
Query: 61 VKCVDDQ---TRHVTTADLKSTDARVVPVTSR-NRDADMNE----------------YGE 100
V V+ + VT+ L+ + P S D+ E G+
Sbjct: 124 VSAVNREYGSPMAVTSDMLEVIPSPNTPQQSPYGPPPDIGEEERELIAHHDPELGVPVGK 183
Query: 101 TDD----ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF--- 153
D I + ++ +GQE+ + A KG K HAKW+P + V +EYDP N +RHT +
Sbjct: 184 GDPTASPIQLARISRGQEIEVICKAYKGIAKHHAKWSPLSAVAYEYDPYNKLRHTDYWFE 243
Query: 154 -PKPDEWPKSEYSELDETQH-EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 211
EWP S + + + P+++ A P+ Y+ ES G++ ++ ++ +
Sbjct: 244 TDAAAEWPLSANANFETPPNPNEPFDFNAVPSTYYMTAESVGSVPVRSVFEQACDIMVEN 303
Query: 212 LSNL 215
L+ +
Sbjct: 304 LAQV 307
>gi|307108317|gb|EFN56557.1| hypothetical protein CHLNCDRAFT_144215 [Chlorella variabilis]
Length = 283
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 122/276 (44%), Gaps = 79/276 (28%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V+ EAN+TVL+DEF+A R+GLIPL S V
Sbjct: 48 IAIELVEFEANTTVLNDEFLAHRLGLIPLVSTRV-------------------------- 81
Query: 61 VKCVDDQTRHVTTADLKST-DARVVPVTSRNRDADMNEYG----ETDDILIVKLRKGQEL 115
D+KS +A+V +R R ++ G E IL+VK+R+ QEL
Sbjct: 82 -------------HDMKSIYEAQVGAWVARRRRHYIHPVGYHDREDKGILLVKMRRNQEL 128
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-----PKPDEW----PKSEYSE 166
+LRA A+KG GK+HAKW P A +++ P+ ++ H L + +EW P+ +
Sbjct: 129 KLRAVARKGTGKDHAKWMPVATCVYQFMPEITINHALMDTLTDDQKEEWCAADPRKTF-R 187
Query: 167 LDETQHEAP------YNWEA-------------------KPNKYFFNVESAGALKPENIV 201
L++ H Y ++ K + + F VE G L P++IV
Sbjct: 188 LNKLTHRVEVTNPELYQYDGEVLAKAEEMGKPGLVAIKQKQDTFIFRVEGTGVLPPQDIV 247
Query: 202 IMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNWEA 237
+ VL K+ NL LA + + E P +A
Sbjct: 248 LTACEVLASKIRNLDAALAEEARRFDGREEPAPMQA 283
>gi|428184897|gb|EKX53751.1| hypothetical protein GUITHDRAFT_100722 [Guillardia theta CCMP2712]
Length = 319
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 133/288 (46%), Gaps = 30/288 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVV--DRILYSRDC--TCVDFC------ 50
+AID V++E NS+VL+DEFIA R+GLIPL S + D + RD F
Sbjct: 45 IAIDLVEIEENSSVLADEFIAHRLGLIPLVSTRAMHADGPVPFRDVEGNITSFLWHHEAS 104
Query: 51 --SECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVK 108
+C ++F L+V+ +D V + R++ V EY ++I K
Sbjct: 105 DDKDCEIKFELEVRNTEDNPMEVRLILI-----RLLEVLRHGGGVKPVEYDPEYPVVIAK 159
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELD 168
L++ Q ++L A AKKG GK H+KW+P +GV F Y+P ++ + E E
Sbjct: 160 LKRNQAIKLTAIAKKGVGKMHSKWSPASGVYFTYEPVVTINY------------ERMEGL 207
Query: 169 ETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVI 228
Q + P FN E G ++ E+ + G+ + + +D ++
Sbjct: 208 SAQQRKTWVEACPPGILRFN-EMTGQVEVEDEINNGIAFSGECEKVAKELFGYDFYDLIV 266
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ + P+++ F VE+ GAL P +V + L +K+ N++ L
Sbjct: 267 IKPKSGSDGYPDRFNFFVETNGALDPVTLVRAAIWELVRKVQNIEESL 314
>gi|124507008|ref|XP_001352101.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
gi|23505130|emb|CAD51912.1| DNA-directed RNA polymerase II, putative [Plasmodium falciparum
3D7]
Length = 335
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 133/286 (46%), Gaps = 38/286 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N++ DEFIA R+GLIP+ S V+ + C C + CS+C++++ ++
Sbjct: 49 LAIDVVNVYENTSAFHDEFIAHRLGLIPIDSRN-VNNYEFREKCKCKETCSKCTIQYIIE 107
Query: 61 VKCVDDQTRHVTTADLKSTDAR---VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
VKC V+ D++S + +P+ N+++ + I IV L K Q L +
Sbjct: 108 VKCNHSNKIDVSHYDIESLEHEPNVPMPIPHGNKNS-----VSENAIPIVTLSKNQTLHM 162
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYN 177
+ A KG GK HAKW P A V + D ++H L K +H+
Sbjct: 163 KLIATKGIGKMHAKWIP-ANVSYRIDHKVLIKHNLIDKLS------------NEHKLLLA 209
Query: 178 WEAKPNKYFFNVESAGALKPENIVI-------MGVTVLKQKLSNLQTQLAHDRVFYVINE 230
+ Y N ++ N I M V V+ + +L ++L + + ++ +
Sbjct: 210 NNLNKDCYILNKDTHDDDNNNNNNIQLKLKENMSV-VMAESSIDLLSELGYKDIIKIVYD 268
Query: 231 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ F+VES G++ PE IV M + +L+ KL L+ Q+
Sbjct: 269 ETM--------FHFHVESVGSIPPEQIVQMAIDILENKLKVLEPQI 306
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEA 231
+ F+VES G++ PE IV M + +L+ KL L+ Q+ FY I+E
Sbjct: 272 FHFHVESVGSIPPEQIVQMAIDILENKLKVLEPQIKSS--FYSIDEV 316
>gi|68070451|ref|XP_677137.1| DNA-directed RNA polymerase II [Plasmodium berghei strain ANKA]
gi|56497133|emb|CAH93597.1| DNA-directed RNA polymerase II, putative [Plasmodium berghei]
Length = 331
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 123/270 (45%), Gaps = 43/270 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N++ DEFIA RIGLIP+ S + R C C + CS C+V++ ++
Sbjct: 47 LAIDIVNVYENTSPFHDEFIAHRIGLIPIDSRNIKSYEFRER-CKCKETCSRCTVQYIIE 105
Query: 61 VKCVDDQTRHVTTADLKSTDARV-VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
VKC + +V+ D+++ D +P+ N + + N + I IV L K Q + ++
Sbjct: 106 VKCNNANKINVSHYDIEALDHEPNIPMPIPNDNKNNNIEKMENAIPIVTLSKNQTIHMKL 165
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYD----------PDNSMRHTLFP----KPDEWPKSEYS 165
A KG GK HAKW P A V + D S H L PD + E
Sbjct: 166 TATKGIGKMHAKWIP-ANVSYIIDHKIVINNHEVDKMSKEHKLLIANNLNPDFYILKEMD 224
Query: 166 E-------LDETQ------------HEAPYNWEA-----KPNKYFFNVESAGALKPENIV 201
+ L E +E YN + K+ F +ES G++ PE IV
Sbjct: 225 DDRNVELRLSENMSVVMAESCRDALNELGYNKDIVKIIYDETKFHFKIESVGSMPPEQIV 284
Query: 202 IMGVTVLKQKLSNLQTQLAHDRVFYVINEA 231
M + +L+ KL +L+ Q+ FY I E
Sbjct: 285 EMAIEILESKLKDLEPQIKAS--FYSIEEV 312
>gi|302833623|ref|XP_002948375.1| hypothetical protein VOLCADRAFT_88650 [Volvox carteri f.
nagariensis]
gi|300266595|gb|EFJ50782.1| hypothetical protein VOLCADRAFT_88650 [Volvox carteri f.
nagariensis]
Length = 272
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 85/153 (55%), Gaps = 13/153 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEF+A R+GL+PL S E V + R + F+LD
Sbjct: 27 IAIDLVEMENNTTVLNDEFLAHRLGLLPLVSTEAV---AWKRPFEWSNDADMIETAFSLD 83
Query: 61 VKCVDDQTRHVTTADLKSTDAR--VVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
V C D VT+ DL + V PV +N D I+I K+R+GQ+L+L
Sbjct: 84 VTCTVDGVMDVTSNDLVPLNPEHGVFPVNYQNPDEK--------PIVICKMRRGQQLKLV 135
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT 151
A A+KG GK+HAK+ P A F+Y P + H+
Sbjct: 136 ARARKGIGKDHAKFIPVATAVFQYKPRIVLSHS 168
>gi|160331749|ref|XP_001712581.1| rpb3 [Hemiselmis andersenii]
gi|159766030|gb|ABW98256.1| rpb3 [Hemiselmis andersenii]
Length = 307
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 85/147 (57%), Gaps = 5/147 (3%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
AID + +E NS+V+ DEF++ R+GL+PL S+ Y+R+C C +CS+CS +F+LD
Sbjct: 42 FAIDLLFIEINSSVMHDEFLSHRLGLLPLFSN-FAHEFRYTRECDCEQYCSKCSFKFSLD 100
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD---ILIVKLRKGQELRL 117
+ + + + + DL + D + + + ET D ILI KL GQ ++L
Sbjct: 101 I-YAEKFPQSIFSTDLNTIDKKENFFYQQINPIHYSSLKETLDQKPILIGKLGIGQRIKL 159
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDP 144
A AKKG GKEHAKW+P + + + P
Sbjct: 160 VAIAKKGIGKEHAKWSPISVIKIKKIP 186
>gi|390939160|ref|YP_006402898.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
gi|390192267|gb|AFL67323.1| DNA-directed RNA polymerase [Desulfurococcus fermentans DSM 16532]
Length = 284
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 117/260 (45%), Gaps = 56/260 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD----FCSECSVE 56
MA+D+V + NS+V DE+I+ R+GLIPL S+E +++ +C F +C V
Sbjct: 43 MAVDYVAITENSSVFYDEYISHRLGLIPLKSNEALNKYKPPEECAEAGDRGIFSQDCFVT 102
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
L+ + V + DL S+D VVP+ YGE I I+KL K Q +R
Sbjct: 103 LRLEASGPEKGVLTVYSRDLVSSDPDVVPI-----------YGE---IPILKLIKDQSIR 148
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDP-----------------------------DNS 147
L AYA+ G GKEH KW+P + +Y P +NS
Sbjct: 149 LEAYARLGRGKEHIKWSPVSTAAHKYIPVITLNSEKCKGAECSRCVNACPKNIFEADNNS 208
Query: 148 MRHTLFPKPDEWPKSEYSELDET---QHEAPYNWEAKPNKYFFNVESAGALKPENIVIMG 204
+R K D+ + + L E +W + N+Y F +E GAL NI+I
Sbjct: 209 VR----VKEDKILECTFCRLCENVCPTQAVKVSW--RENEYIFYLELTGALNARNILIEA 262
Query: 205 VTVLKQKLSNLQTQLAHDRV 224
+ +L +KL +L + V
Sbjct: 263 INILSRKLDAFIDELRRNGV 282
>gi|83286741|ref|XP_730293.1| conjugation stage-specific protein [Plasmodium yoelii yoelii 17XNL]
gi|23489977|gb|EAA21858.1| conjugation stage-specific protein, putative [Plasmodium yoelii
yoelii]
Length = 335
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 122/276 (44%), Gaps = 55/276 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N++ DEFIA RIGLIP+ S + + R C C + CS C+V++ ++
Sbjct: 51 LAIDIVNVYENTSPFHDEFIAHRIGLIPIDSRNIKNYEFRER-CKCKETCSRCTVQYIIE 109
Query: 61 VKCVDDQTRHVTTADLKSTDARV-VPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
VKC + V+ D+++ D +P+ N + + N + I I+ L K Q + ++
Sbjct: 110 VKCNNANKIDVSHYDIEALDHEPNIPMPIPNDNKNNNIEKMENAIPILTLSKNQTIHMKL 169
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSE---------------- 163
A KG GK HAKW P A V + D H + E K
Sbjct: 170 TATKGIGKMHAKWIP-ANVSYIID------HKIIINNHEVDKMSKEHKLLIANNLNSDCY 222
Query: 164 -YSELD----------------------ETQHEAPYNWEA-----KPNKYFFNVESAGAL 195
ELD +T +E YN + K+ F +ES G++
Sbjct: 223 ILKELDDDRDVELRLSENMSVVMAESCRDTLNELGYNKDIVKIIYDETKFHFKIESVGSM 282
Query: 196 KPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEA 231
PE IV M + +L+ KL +L+ Q+ FY I E
Sbjct: 283 PPEQIVEMAIEILENKLKDLEPQIKAS--FYSIEEV 316
>gi|223998876|ref|XP_002289111.1| RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit [Thalassiosira pseudonana CCMP1335]
gi|220976219|gb|EED94547.1| RP3A,-like protein to dna-directed RNA polymerase II third largest
subunit [Thalassiosira pseudonana CCMP1335]
Length = 297
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 129/292 (44%), Gaps = 58/292 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYS---RDCTCVDFCSECSVEF 57
+AID V+ NS+VL+DE+IA R+GL+P+ R + ++C C D C C VEF
Sbjct: 42 LAIDLVEYSENSSVLNDEYIAHRLGLVPI-------RFMAEGSLKECVCYDRCPRCCVEF 94
Query: 58 TLDVKCVD-DQTR---------HVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIV 107
LDV +QTR VT+ DL S + V P N + + E I IV
Sbjct: 95 ELDVNFDKVNQTRPDTERDLALTVTSRDLISNNMLVSPAHFLNEEEQDESHDE--GISIV 152
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE- 166
KL GQ L+L+A A+ G KEHAKW P A + + WP +E
Sbjct: 153 KLGPGQHLKLKAIARMGISKEHAKWCPVAVATYRF----------------WPIITINEE 196
Query: 167 ------LDETQHEAPYNWEAKPNKYFFNVESAGAL-KPENIVIMGVTVLKQK-LSNLQTQ 218
L++ Q EA P++ E G L EN M K + N +
Sbjct: 197 ACNMLTLEQKQELV----EACPDRILELDEITGNLVAVENAYEMATFTEDLKTVQNAMKK 252
Query: 219 LAHDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 270
D F N +++ F+VES GA+ E I++ + VLK +L+
Sbjct: 253 RPEDDDF-------VNVVQSTDRFVFSVESTGAMDAEEILLSSLRVLKDRLN 297
>gi|124027415|ref|YP_001012735.1| DNA-directed RNA polymerase subunit D [Hyperthermus butylicus DSM
5456]
gi|123978109|gb|ABM80390.1| DNA-directed RNA polymerase subunit D [Hyperthermus butylicus DSM
5456]
Length = 281
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 114/253 (45%), Gaps = 45/253 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCS-ECSVEFTL 59
MA+D V++ N+TVL DE IA R+GLIPLTS E + + +C + C V L
Sbjct: 40 MAVDVVEVFENNTVLYDEIIAHRLGLIPLTSKEALQKYKRPEECEKAELGDPSCYVVLRL 99
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+V+ + R V + DL+++D V PV D++ IV + Q LRL+A
Sbjct: 100 EVETGPREERIVYSGDLETSDPDVRPV--------------YDNMPIVVMAPDQRLRLQA 145
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDP----------DNSMRHT------LFPKPDEWPKSE 163
YA+ G+G+EHAKW P + Y P D +R L K E
Sbjct: 146 YARLGYGREHAKWMPVSVAAHRYLPILEFNLDEMSDECIRCIESGYPELAAKIREMRSGS 205
Query: 164 YSELDETQHEAPYNWEAKPN-------------KYFFNVESAGALKPENIVIMGVTVLKQ 210
+ +++ Y W + ++ +ES GAL PE+IV + +
Sbjct: 206 IAVVEDVNTSGLY-WCVQRRCGGKGVKLVYDDKRFILKIESTGALPPEDIVREAARAIVR 264
Query: 211 KLSNLQTQLAHDR 223
K NL +QLA R
Sbjct: 265 KAENLLSQLAELR 277
>gi|218884674|ref|YP_002429056.1| DNA-directed RNA polymerase subunit D [Desulfurococcus
kamchatkensis 1221n]
gi|218766290|gb|ACL11689.1| DNA-directed RNA polymerase subunit D [Desulfurococcus
kamchatkensis 1221n]
Length = 280
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 115/256 (44%), Gaps = 48/256 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD----FCSECSVE 56
MA+D+V + NS+V DE+I+ R+GLIPL S+E +++ +C F +C V
Sbjct: 39 MAVDYVAITENSSVFYDEYISHRLGLIPLKSNEALNKYKPPEECAEAGDRGIFSQDCFVT 98
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
L+ + V + DL S+D VVPV YGE I I+KL K Q +R
Sbjct: 99 LRLEASGPEKDVLTVYSRDLVSSDPDVVPV-----------YGE---IPILKLIKDQSIR 144
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPD-----------------NSMRHTLFP----- 154
L AYA+ G GKEH KW+P + +Y P N+ +F
Sbjct: 145 LEAYARLGRGKEHIKWSPVSTAAHKYVPAITIDSEKCKGAECSRCVNACPKNIFEAGNNS 204
Query: 155 ---KPDEWPKSEYSELDET---QHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVL 208
K D+ + + L E +W + N+Y +E GAL NI+I + +L
Sbjct: 205 VRVKEDKILECTFCRLCENICPTQAVKVSW--RENEYILYLELTGALNARNILIEAINIL 262
Query: 209 KQKLSNLQTQLAHDRV 224
+KL +L + V
Sbjct: 263 SRKLDAFIDELRRNGV 278
>gi|296090458|emb|CBI40277.3| unnamed protein product [Vitis vinifera]
Length = 206
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 99/194 (51%), Gaps = 41/194 (21%)
Query: 66 DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD--DILIVKLRKGQELRLRAYAKK 123
D+T VT+ DL S+D VVPV +D + Y D I+IVKLR+GQELRLRA A+K
Sbjct: 3 DETLDVTSKDLISSDHTVVPVDF----SDSSGYDSADKKGIIIVKLRRGQELRLRAIARK 58
Query: 124 GFGKEHAKWNPTAGVCFEYDP-----DNSMRHTLFPKPDEWPKSEYS---ELDETQHEA- 174
G GK+HAKW+P A V F Y+P ++ M + W +S + ++D + +
Sbjct: 59 GIGKDHAKWSPAATVTFMYEPEIHINEDLMESLTLEEKTSWVESSPTKVFDIDASSQQVV 118
Query: 175 -----PYNWE-------------------AKPNKYFFNVESAGALKPENIVIMGVTVLKQ 210
Y ++ AK + + F VES GA+K +V+ + VLKQ
Sbjct: 119 VADAEAYTYDDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIDVLKQ 178
Query: 211 KLSNLQTQLAHDRV 224
KL + +L+ D V
Sbjct: 179 KLDAV--RLSEDTV 190
>gi|126465715|ref|YP_001040824.1| DNA-directed RNA polymerase subunit D [Staphylothermus marinus F1]
gi|126014538|gb|ABN69916.1| DNA-directed RNA polymerase, subunit D [Staphylothermus marinus F1]
Length = 280
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 115/261 (44%), Gaps = 56/261 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD----FCSECSVE 56
MAID V NS+V DE+IA R+GLIPLTS+ +D+ +C F +C V+
Sbjct: 39 MAIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAALDKYKSPEECREAGDRGLFTEDCFVK 98
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
L+ K + + + + DLK++D V PV D+I I+ L K QE+R
Sbjct: 99 LDLEGKGEEGKLVTLHSGDLKTSDPDVKPVY--------------DNIPIIVLGKNQEIR 144
Query: 117 LRAYAKKGFGKEHAKWNPTAGV----------------------CFEYDPDNSMR----- 149
L AYA+ G GKEHAKW+P + C E P N +
Sbjct: 145 LEAYARLGRGKEHAKWSPVSVAAHKYIADIYIDEKKCLGENCKKCIEVCPRNILSFENGK 204
Query: 150 -----HTLFPKPDEWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMG 204
+ +F EY D + W + N+Y +ES G+L P+ I+I
Sbjct: 205 IIVNTNKIFDCSLCRICEEYCPTDAIR----VGW--RENEYILTIESTGSLPPKRILIEA 258
Query: 205 VTVLKQKLSNLQTQLAHDRVF 225
V +L+ K+ + L + +
Sbjct: 259 VKILENKIDDFIENLRSEGII 279
>gi|332796346|ref|YP_004457846.1| RNA polymerase D subunit [Acidianus hospitalis W1]
gi|332694081|gb|AEE93548.1| Archaeal RNA polymerase D subunit [Acidianus hospitalis W1]
Length = 260
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTL 59
MA+D V + N++ L DE +A R+GLIP +SDE +D S +C C + C C + L
Sbjct: 38 MAVDDVYIIENNSPLYDEILAHRLGLIPFSSDEAIDHYRPSEECANCQENCDGCFSKIYL 97
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
DV+ D + V + D+KS D VVP++ DI IV L K Q++ L A
Sbjct: 98 DVEAKDSEV-MVYSKDIKSDDPAVVPISK--------------DIPIVLLGKNQKVSLEA 142
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE-WPKSEYS----------ELD 168
+ G+G EHAK+NP Y P ++ K E P+ ++ E+
Sbjct: 143 RLRLGYGIEHAKFNPVTIAVLRYYPHIELKDDSCVKAAEVCPEKVFAVKDGKLVIANEIA 202
Query: 169 ETQHEAPYNW------EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
T E + + NKY +ES G+LKPE I++ + +KL L+ ++
Sbjct: 203 CTLCEECLRYCEGIKISSVENKYILEIESVGSLKPERILLEAGKSIVRKLEELKKVIS 260
>gi|84489668|ref|YP_447900.1| DNA-directed RNA polymerase subunit D [Methanosphaera stadtmanae
DSM 3091]
gi|121731854|sp|Q2NFZ6.1|RPOD_METST RecName: Full=DNA-directed RNA polymerase subunit D
gi|84372987|gb|ABC57257.1| RpoD [Methanosphaera stadtmanae DSM 3091]
Length = 270
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 113/240 (47%), Gaps = 41/240 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N + DE +A R+GLIP+ +D +D + +C C C C V F L
Sbjct: 39 LAIEDVNIYKNDAKMFDEVLAHRLGLIPIVTD--LDSYVMPSECDCESGCQHCRVSFLLK 96
Query: 61 VKCVD-DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
KC + + ++ V + DLKS D V PV D I IV+LR+G+E+ L A
Sbjct: 97 EKCEEGNDSKIVYSKDLKSDDPAVKPVY--------------DTIPIVRLREGEEVELEA 142
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDP----DNSMRHTLFPKPDEWPKSEYSELDET----- 170
A+ G G EHAKW T ++Y P D + L +E P++ D+T
Sbjct: 143 IAELGLGSEHAKWQATTTCGYKYYPKIEIDTEKVNDLEEYVEECPRNVLQIEDDTLVVGN 202
Query: 171 ---------------QHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
+ + + + +KY F +E+ G+LKP +++ + +L +K N+
Sbjct: 203 IENCSTCRTCQRLSEKDDNAIVVDFEESKYIFKIETDGSLKPFDVLTIACDILSEKADNI 262
>gi|297527612|ref|YP_003669636.1| RNA polymerase insert [Staphylothermus hellenicus DSM 12710]
gi|297256528|gb|ADI32737.1| RNA polymerase insert [Staphylothermus hellenicus DSM 12710]
Length = 280
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 114/261 (43%), Gaps = 56/261 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD----FCSECSVE 56
MAID V NS+V DE+IA R+GLIPLTS+ +D+ +C F +C V+
Sbjct: 39 MAIDSVVFTMNSSVFYDEYIAHRLGLIPLTSEAALDKYKSPEECKEASDRGLFTEDCFVK 98
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
L+ K + + + + DLK++D V PV D+I I+ L K QE+R
Sbjct: 99 LDLEGKGEEGKLVTLHSGDLKTSDPDVKPVY--------------DNIPIIVLGKNQEIR 144
Query: 117 LRAYAKKGFGKEHAKWNPTAGV----------------------CFEYDPDNSM------ 148
L AYA+ G GKEHAKW+P + C E P N +
Sbjct: 145 LEAYARLGRGKEHAKWSPVSIAAHKYIADIHIDEKKCLGENCKKCVEVCPRNILSFKNGK 204
Query: 149 ----RHTLFPKPDEWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMG 204
R +F EY + W + N+Y +ES G+L P+ I+I
Sbjct: 205 ITVNRDRIFDCSLCRICEEYCPAGAIK----VGW--RENEYILTIESTGSLPPKRILIEA 258
Query: 205 VTVLKQKLSNLQTQLAHDRVF 225
V +L+ K+ + L + +
Sbjct: 259 VKILENKIDDFIENLRGEGII 279
>gi|320101538|ref|YP_004177130.1| DNA-directed RNA polymerase subunit D [Desulfurococcus mucosus DSM
2162]
gi|319753890|gb|ADV65648.1| DNA-directed RNA polymerase, subunit D [Desulfurococcus mucosus DSM
2162]
Length = 280
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 116/256 (45%), Gaps = 48/256 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD----FCSECSVE 56
MA+D+V + NS+V DE+IA R+GLIPL SDE + + +C F +C
Sbjct: 39 MAVDYVAITENSSVFYDEYIAHRLGLIPLKSDEALHKYKPPEECAEAGEKGVFSQDCFAT 98
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
L+ K +D + + L+S+D V PV YG+ + +V+L + Q +R
Sbjct: 99 LRLEAKGPEDGVLTIYSEMLESSDPDVTPV-----------YGK---VPVVRLTRNQSIR 144
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDP-----------------DNSMRHTLFP----- 154
L AYA+ G GKEHAKW+P + +Y P N+ +F
Sbjct: 145 LEAYARLGRGKEHAKWSPVSVATHKYIPVITVNAEKCQGTKCSRCANTCPKGVFEASGDA 204
Query: 155 ---KPDEWPKSEYSELDETQHEA---PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVL 208
K D + + L E A +W + N+Y ++E GAL N+++ V +L
Sbjct: 205 IRVKEDRVLECTFCRLCENTCPAGAVKVSW--RDNEYILSLELTGALSARNVLLEAVNIL 262
Query: 209 KQKLSNLQTQLAHDRV 224
+KL +L + V
Sbjct: 263 SRKLDAFMDELRRNGV 278
>gi|330040504|ref|XP_003239937.1| DNA-directed RNA polymerase II [Cryptomonas paramecium]
gi|327206863|gb|AEA39039.1| DNA-directed RNA polymerase II [Cryptomonas paramecium]
Length = 301
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 82/143 (57%), Gaps = 4/143 (2%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+++D V +E NS++L DEFIA R+ L+PL S + + + YS DC C +C CS F L+
Sbjct: 37 LSVDLVYIEKNSSLLHDEFIAHRLSLLPLDSQNIKN-LNYSMDCECNSYCQLCSRVFELN 95
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGETDDILIVKLRKGQELRLR 118
+ ++ +HV + L ++ + + + + + +I+I KL KGQ ++L
Sbjct: 96 I-IANENLKHVFSTHLLEVSSQKYSLERKPNLLNQHLKKINFDSEIIITKLTKGQSIKLI 154
Query: 119 AYAKKGFGKEHAKWNPTAGVCFE 141
AKKG GK HAKWNP + + F+
Sbjct: 155 CVAKKGTGKMHAKWNPVSNIRFK 177
>gi|123448560|ref|XP_001313008.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
gi|121894876|gb|EAY00079.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Trichomonas vaginalis G3]
Length = 322
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 116/273 (42%), Gaps = 48/273 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTC----VDFCSECSVE 56
+A+D V+ N++ L DE+IA R+ LIP S++ D+ Y C C + +C C+V
Sbjct: 51 LAVDTVEFFQNTSPLPDEYIAHRLALIPFVSEDA-DKFFYHSQCNCDGSQLGYCPNCTVI 109
Query: 57 FTLDVKCV--DDQTRHVTTADLK-------STDARVVPVTSRNRDADMNEYGETDD--IL 105
+T+D C D VT+ DLK + + + + + A + G+++ +
Sbjct: 110 YTIDAHCEPESDSVVEVTSNDLKLIAPHKWADKSTMGSIHIGVKPATLFANGDSNPQPVT 169
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I KL GQ LRL AY +KG G+ HAKW+P + R D+ K E
Sbjct: 170 ITKLAPGQTLRLAAYIRKGIGRNHAKWSPVCVSTYHQVASIDFREAYKQIMDQKEKEEVV 229
Query: 166 E----------LDET----------------------QHEAPYNWEAKPNKYFFNVESAG 193
LD+ H+ ++K + FNVE+ G
Sbjct: 230 ASCPKKCLKMGLDDNIQVANFEDCTFCNQCIRTAEVHGHKDAIVIQSKRGLFVFNVETIG 289
Query: 194 ALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFY 226
+L PEN+V G L KL + + ++ Y
Sbjct: 290 SLSPENVVTRGFQALTNKLDQFKKNVDELQITY 322
>gi|156082852|ref|XP_001608910.1| DNA-directed RNA polymerase II [Babesia bovis T2Bo]
gi|154796160|gb|EDO05342.1| DNA-directed RNA polymerase II, putative [Babesia bovis]
Length = 382
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 141/323 (43%), Gaps = 73/323 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++VL DE+IA R+GL+P+ S + Y CTC D CS C+VE++LD
Sbjct: 48 LAIEVVTVLENTSVLHDEYIAHRLGLLPIESSSARN-FEYRDKCTCSDKCSRCTVEYSLD 106
Query: 61 VKCVDDQTRHVTTADL-----KSTDARV---VPVTSRNRDADMNEYGE------------ 100
VKC+DD TR VT D+ +++ V +PV + DA N G+
Sbjct: 107 VKCMDD-TRVVTHYDINLDSWENSRGNVNAPMPVPRPSADALGNAPGDQGSDPQRVNSSG 165
Query: 101 --------------------------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 134
T I IVKL++GQ L L+ A KG GK HAKW
Sbjct: 166 NATARNVQNPDGPHTGAVDRKSGSVPTGGIPIVKLKRGQCLSLKMTATKGLGKFHAKWM- 224
Query: 135 TAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGA 194
A V ++ +P ++ + K + K++ ++ P K F GA
Sbjct: 225 VANVAYKMEPVITINRQVAEKMNLNEKTQI-------------VQSCPRKVFKLSNPHGA 271
Query: 195 LKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYN--WEAKPN--KYFFNVESAG 250
T + + N + D E Y +P+ K+ F +ES G
Sbjct: 272 YST-------ATKAEIVIDNNLNCIYCDECLNQAREMGYRDLIRVQPDETKFHFTIESNG 324
Query: 251 ALKPENIVIMGVTVLKQKLSNLQ 273
A+ PE I+ + + L++KL +L
Sbjct: 325 AISPEKILEICLDTLEEKLGSLH 347
>gi|410721684|ref|ZP_11361014.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanobacterium sp. Maddingley MBC34]
gi|410598430|gb|EKQ53003.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanobacterium sp. Maddingley MBC34]
Length = 266
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 46/242 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V++ N + DE +A R+GL+PLT+D ++ ++ + DC C CS CS+ L
Sbjct: 39 LAIETVEILKNDARIFDEALAHRLGLVPLTTD--LESLVPAEDCDCEGHCSRCSISLILK 96
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
K + + + DLKS D + PV D I +VKL++G E+ L A
Sbjct: 97 GK----GPKTLYSGDLKSEDPNLKPVL--------------DTIPLVKLKEGDEVELEAI 138
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMR----HTLFPKPDEWPKS--EYSE-------- 166
A+ GFGKEHAKW PT +++ P+ ++ E P++ E++E
Sbjct: 139 AQLGFGKEHAKWQPTTTCAYKHYPEINIDLDKCEACLDCVKECPRNVLEFNEKNNQITVV 198
Query: 167 -----------LDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
+ + Q++A E +K+ F +E+ G+L P ++ +L +K +
Sbjct: 199 DLENCSMCRTCVKDCQNKA-ITVEIVEDKFIFRIETDGSLSPTEVLTRACDILSEKADKV 257
Query: 216 QT 217
T
Sbjct: 258 VT 259
>gi|146304892|ref|YP_001192208.1| DNA-directed RNA polymerase D [Metallosphaera sedula DSM 5348]
gi|145703142|gb|ABP96284.1| DNA-directed RNA polymerase, subunit D [Metallosphaera sedula DSM
5348]
Length = 262
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTL 59
MA+D V + N++ L DE +A R+GLIP S + +D +C C + C C + +
Sbjct: 39 MAVDEVYVIENNSPLYDEMLAHRLGLIPFDSKDALDYYRRPEECIECTENCDRCFTKAYI 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
DVK D Q V + D+++ D V P++ DI IV L K Q++ L
Sbjct: 99 DVKAEDSQV-MVYSRDIRTEDPNVTPISK--------------DIPIVLLGKNQKVTLEM 143
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS----------ELDE 169
+ G+GKEHAK+NP + Y P + + P+ +S E+
Sbjct: 144 KMRLGYGKEHAKFNPVSLAILRYKPKVEVNKDCEKAVEVCPERVFSFENGKLKVVNEMAC 203
Query: 170 TQHE------APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
T E N +PN+Y +ES G+L+P I+I + K+ L+ ++
Sbjct: 204 TLCEECVKACEGINVSPEPNQYILEIESVGSLEPRRILIEATKSILSKIEELKKKV 259
>gi|159489602|ref|XP_001702786.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158280808|gb|EDP06565.1| DNA-directed RNA polymerase II, 36 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 275
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/145 (42%), Positives = 81/145 (55%), Gaps = 15/145 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEF+A R+GLIPL S V + R F+LD
Sbjct: 51 IAIDLVEMENNTTVLNDEFLAHRLGLIPLVSRNAV---YWKRPFEWSGDNDIIETAFSLD 107
Query: 61 VKCVDDQTRHVTTADLK--STDARVVPVTSRNRDADMNEYGETDD-ILIVKLRKGQELRL 117
V C + VT+ DL DA VVPV N + T+ I+I KLR+GQ L+L
Sbjct: 108 VMCEQEGVMDVTSNDLVPLEPDAGVVPV---------NYHSATEKPIVICKLRRGQHLKL 158
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEY 142
A A+KG GK+HAK+ P A F+Y
Sbjct: 159 VARARKGIGKDHAKFIPVATAVFQY 183
>gi|158293560|ref|XP_314897.4| AGAP008771-PA [Anopheles gambiae str. PEST]
gi|157016767|gb|EAA10097.5| AGAP008771-PA [Anopheles gambiae str. PEST]
Length = 261
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 15/222 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTL 59
MAI+ V + N++++ DE +A R+GLIPL +D ++ D S ++EF L
Sbjct: 44 MAIEKVHIYNNTSIIQDEVLAHRLGLIPLRADPR----MFEYKANETDPPSALDTLEFEL 99
Query: 60 DVKC---------VDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD-ILIVKL 109
VKC V + + S + VP+ ++ G DD ILI K+
Sbjct: 100 KVKCTRKNKDSTEVTNNENMYKNHSIYSGQIKWVPIGNQATIYTEAAVGPIDDDILISKM 159
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDE 169
R G E ++ +A KG GK+HAK++P A V + PD + + K + +
Sbjct: 160 RPGHEFDIKLFAVKGVGKDHAKFSPVATVSYRLLPDIKLNRPAYVKDARYDSCSRNVYRY 219
Query: 170 TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 211
Q N + F VES GALKPE I + VLK+K
Sbjct: 220 PQLADAVTIARVRNHFIFTVESLGALKPEVIFVEAAKVLKKK 261
>gi|242021511|ref|XP_002431188.1| DNA-directed RNA polymerase I 40 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212516437|gb|EEB18450.1| DNA-directed RNA polymerase I 40 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 347
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 118/259 (45%), Gaps = 44/259 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N+T++ DE +A R+GL+PL +D R+ R + + ++EF L
Sbjct: 81 MAIEKVFVSNNTTLIKDEVLAHRLGLVPLKAD---SRLFEYRSENSNEPNEQDTLEFELK 137
Query: 61 VKCVDDQTRHVTTADLK---------STDARVVPVTSRNRDADMNEYGET-DDILIVKLR 110
+KC ++ H + + S + VP+ S+ D G DIL+ KLR
Sbjct: 138 IKCSVNKEGHKNSYQIDDLYINHSVYSKHLKWVPIGSQGTTYDEKNIGPVLPDILLNKLR 197
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKS-------E 163
GQEL L+ +A KG GK+H K++P A + P+ +M + + E ++ E
Sbjct: 198 PGQELDLKLHAVKGLGKDHTKFSPVATAFYRMLPEITMVKKVTGEAAERLQNCFSPGVIE 257
Query: 164 YSELDETQHEAPYNWEAK-----------------------PNKYFFNVESAGALKPENI 200
E DE + EA Y A+ N + FN+ES GA+ P +
Sbjct: 258 IRENDEGEKEA-YVASARYDSGSRIVFRQEDLKDCVEMKRVRNHFIFNIESVGAIPPNEL 316
Query: 201 VIMGVTVLKQKLSNLQTQL 219
+ V VLK K L +L
Sbjct: 317 FVEAVKVLKNKCFKLLQEL 335
>gi|347523607|ref|YP_004781177.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
gi|343460489|gb|AEM38925.1| DNA-directed RNA polymerase [Pyrolobus fumarii 1A]
Length = 293
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 113/264 (42%), Gaps = 52/264 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC--TCVDFCS------- 51
MAID+V+ N+TVL DE +A R+GLIPL S E + + +C+D
Sbjct: 35 MAIDYVEFIDNNTVLYDEILAHRLGLIPLDSREAIKSYKKPEEFQESCIDSSGVPKFDEP 94
Query: 52 ECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRK 111
C TL+V+ D+ R V + DL+S+D V PV +I IV +
Sbjct: 95 GCFATLTLEVETGVDEVRMVYSGDLQSSDPTVKPVYP--------------NIPIVLMAP 140
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVC------FEYDPDNSMRHTLFPKPDEWP----- 160
GQ L +RAYA+ G+GKEHAKW P + E+DP + + +E+
Sbjct: 141 GQRLHVRAYARLGYGKEHAKWFPVSVAAHRYLPVLEFDPKHEKANDCIECIEEFAPEVAE 200
Query: 161 -------KSEYSELDETQHEA-----------PYNWEAKPNKYFFNVESAGALKPENIVI 202
K L+E + E NK +ES G L +I++
Sbjct: 201 KLRNMKEKGRIEILEEVRSSTLLWCVKKRCGDAAKLEFDSNKLILTIESVGQLPARDILV 260
Query: 203 MGVTVLKQKLSNLQTQLAHDRVFY 226
+ +K+K + ++L R Y
Sbjct: 261 LASDAIKRKALEMISELDELRKAY 284
>gi|407832302|gb|EKF98383.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
cruzi]
Length = 365
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 130/292 (44%), Gaps = 39/292 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV-DFCSECSVEFTL 59
+ I+ V + N++VL DE IA RIGL+PL S + R+ Y+RDC C C EC + L
Sbjct: 73 LGIESVTIIQNTSVLPDEMIAHRIGLVPLYSMKA-RRMQYARDCLCGGSGCGECQINGEL 131
Query: 60 DVKCVDDQ-TRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
V C ++ + V LK D V PV+S R + ++ L + QEL LR
Sbjct: 132 KVSCPSNKHSLQVFMDSLKIDDEEVYPVSSEERG-----------VWLLTLGRSQELNLR 180
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNW 178
+K K HAK+ P A V Y D + PD + K LD T+H W
Sbjct: 181 VVIRKNIAKTHAKFMPVATVAMRYASD------IVLNPDGFAK-----LD-TEHRR--QW 226
Query: 179 -EAKPNKYFFNVESAGAL---KPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYN 234
E P + F + G + P+ + +LK+ N +LA VF +
Sbjct: 227 VERCPRQVFRYDDRTGQVLLADPDACIFCRECLLKEPPFN---KLAEPLVFVRHKKDKRG 283
Query: 235 WEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALA 286
+ + F VES GAL I+ V VL++KL ++ L + + D +
Sbjct: 284 Y----YDFTFTVESTGALPVLQILYDAVEVLRRKLERVRDGLTEDPNADEMV 331
>gi|407410818|gb|EKF33119.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
cruzi marinkellei]
Length = 337
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 130/292 (44%), Gaps = 39/292 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV-DFCSECSVEFTL 59
+ I+ V + N++VL DE IA RIGL+PL S + R+ Y+RDC C C EC + L
Sbjct: 45 LGIESVTIIQNTSVLPDEMIAHRIGLVPLYSMKA-RRMQYARDCLCGGSGCGECQINGEL 103
Query: 60 DVKCVDDQ-TRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
V C ++ + V LK D V PV+S R + ++ L + QEL LR
Sbjct: 104 KVSCPSNKHSLQVFMDSLKIDDEEVYPVSSEERG-----------VWLLTLGRSQELNLR 152
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNW 178
+K K HAK+ P A V Y D + PD + K LD T+H W
Sbjct: 153 VVIRKNIAKTHAKFMPVATVAMRYASD------IVLNPDGFAK-----LD-TEHR--RQW 198
Query: 179 -EAKPNKYFFNVESAGAL---KPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYN 234
E P + F + G + P+ + +LK+ N +LA VF +
Sbjct: 199 VERCPRQVFRYDDRTGQVLLADPDACIFCRECLLKEPPFN---KLAEPLVFLRHKKDKRG 255
Query: 235 WEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALA 286
+ + F VES GAL I+ V VL++KL ++ L + + D +
Sbjct: 256 Y----YDFTFTVESTGALPVLQILYDAVEVLRRKLERVRDGLTEDPNADEMV 303
>gi|71663692|ref|XP_818836.1| DNA-directed RNA polymerase II subunit 3 [Trypanosoma cruzi strain
CL Brener]
gi|70884108|gb|EAN96985.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
cruzi]
Length = 363
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 132/292 (45%), Gaps = 39/292 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV-DFCSECSVEFTL 59
+ I+ V + N++VL DE IA RIGL+PL S + R+ Y+RDC C C EC + L
Sbjct: 71 LGIESVTIIQNTSVLPDEMIAHRIGLVPLYSMKA-RRMQYARDCLCGGSGCGECQINGEL 129
Query: 60 DVKCVDDQ-TRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
V C ++ + V LK D V PV+S E+G + ++ L + QEL LR
Sbjct: 130 KVSCPSNKHSLQVFMDSLKIDDEEVYPVSS-------EEHG----VWLLTLGRSQELNLR 178
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNW 178
+K K HAK+ P A V Y D + PD + K LD T+H W
Sbjct: 179 VVIRKNIAKTHAKFMPVATVAMRYASD------IVLNPDGFAK-----LD-TEHRR--QW 224
Query: 179 -EAKPNKYFFNVESAGAL---KPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYN 234
E P + F + G + P+ + +LK+ N +LA VF +
Sbjct: 225 VERCPRQVFRYDDRTGQVLLADPDACIFCRECLLKEPPFN---KLAEPLVFVRHKKDKRG 281
Query: 235 WEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALA 286
+ + + F VES GAL I+ V VL++KL ++ L + D +
Sbjct: 282 Y----HDFTFTVESTGALPVLQILYDAVEVLRRKLERVRDGLTENPNADEMV 329
>gi|15922388|ref|NP_378057.1| DNA-directed RNA polymerase subunit D [Sulfolobus tokodaii str. 7]
gi|20978711|sp|Q96YW0.1|RPOD_SULTO RecName: Full=DNA-directed RNA polymerase subunit D
gi|15623177|dbj|BAB67166.1| DNA-directed RNA polymerase subunit D [Sulfolobus tokodaii str. 7]
Length = 264
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 106/234 (45%), Gaps = 32/234 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTL 59
MA+D V N++ L DE +A R+ +IP +SDE +D +C C + C C L
Sbjct: 39 MAVDEVYFIENNSPLYDEILAHRLAMIPFSSDEALDHYRPPEECAECKENCDGCYARVYL 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
DV + +T V + DLK+ D +VP++ +I IV L Q++ L A
Sbjct: 99 DVGANEGETVMVYSRDLKTDDPAIVPISG--------------NIPIVLLGPKQKVTLEA 144
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS----------ELDE 169
+ G+GKEH K++P + Y P ++ + P+ + E+
Sbjct: 145 RLRLGYGKEHIKFSPVSIAVVRYYPHVEVKGNCEKAFEVCPEGVFGMENGKLFVKNEVAC 204
Query: 170 TQHEAPYNW-------EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
T E + A NKY +ES G+LKPE I+I L +KL+ L+
Sbjct: 205 TLCEECIKYCENNIFISAVENKYILEIESVGSLKPERILIEAGKSLLRKLNQLK 258
>gi|333987645|ref|YP_004520252.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. SWAN-1]
gi|333825789|gb|AEG18451.1| DNA-directed RNA polymerase subunit D [Methanobacterium sp. SWAN-1]
Length = 278
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 106/240 (44%), Gaps = 46/240 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N + DE +A R+GLIPLT+D ++ ++ + +C C D C CSV L
Sbjct: 52 LAIEDVDIYKNDAKIFDEALAHRLGLIPLTTD--LESMVLASECDCEDHCPRCSVSLLLK 109
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
K + V + DLKS D ++ P D I I+KL+ G+E+ L A
Sbjct: 110 EK----GPKTVYSKDLKSQDPQLKPTY--------------DTIPIMKLKDGEEVELEAI 151
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDP----DNSMRHTLFPKPDEWPKSEYSELDETQHEA-- 174
A+ G G EHAKW PT ++Y P D + +E P+ E D+ ++
Sbjct: 152 AQLGIGLEHAKWQPTTACAYKYYPKITIDAEKCESCAKCVEECPRG-ILEFDDENNKVNI 210
Query: 175 -------------------PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
E + K+ F +E+ G+L PE ++ +L K +
Sbjct: 211 LDIENCSMCKTCVKGCESDAITVEGQEGKFIFKIETDGSLPPEEVLTRACDILSGKTDQI 270
>gi|402467489|gb|EJW02781.1| hypothetical protein EDEG_02821 [Edhazardia aedis USNM 41457]
Length = 244
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 113/225 (50%), Gaps = 30/225 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL--TSDEVVDRILYSRDCTCVDFCSECSVEFT 58
+A D + ++ N+TVL D++IA RIGLIP+ T+D + I ++ +C C +C CS+
Sbjct: 39 IAFDLILIKENTTVLPDDYIAHRIGLIPIFHTNDPKHNLISHT-ECHCQGYCESCSI--- 94
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
D + T+ L T + ++P +N + M ++I IVKL++ Q+L L
Sbjct: 95 ----TCDLVQANTTSECLLVTSSSLLP---KNFERKMF----NENIPIVKLQRRQKLCLT 143
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD----EWPKSEYSELDETQHEA 174
A A+KG K+++KW V FEYDPDN +RHT + + EWP + E +
Sbjct: 144 AVARKGIAKDNSKWQVVNNVGFEYDPDNKLRHTKYWIEENVEKEWPGVKEKEFEMMDGPG 203
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
P + N N G + E+ VLK+K+ L+ L
Sbjct: 204 PITMKINVN----NGHDIGLIIRESF-----DVLKEKIDWLRQML 239
>gi|146092793|ref|XP_001466520.1| DNA-directed RNA polymerase I-like protein [Leishmania infantum
JPCM5]
gi|398018535|ref|XP_003862432.1| DNA-directed RNA polymerase I-like protein [Leishmania donovani]
gi|134070883|emb|CAM69559.1| DNA-directed RNA polymerase I-like protein [Leishmania infantum
JPCM5]
gi|322500662|emb|CBZ35739.1| DNA-directed RNA polymerase I-like protein [Leishmania donovani]
Length = 337
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 122/265 (46%), Gaps = 55/265 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTC-VDFCSECSVEFTL 59
+AI++V + N++VL DE IA R+GL+PL S++ R+ + +DC C C +C + +L
Sbjct: 45 LAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEK-AKRLNFPQDCGCGGSGCPDCQITGSL 103
Query: 60 DVKCVDDQ-TRHVTTAD-LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
V+C +Q ++ V D L+ DA V PV++ E+G I +V L + Q L L
Sbjct: 104 KVQCPPNQHSKQVFIGDSLQIDDAEVYPVSA-------EEHG----IWLVTLGRSQVLDL 152
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPD-----NSMRHTLFPKPDEW----PKSEYSELD 168
+K K HAK+ P A V Y P+ N + K EW P++ + ++
Sbjct: 153 HVVIRKNIAKTHAKFMPVATVAMRYAPEIILNPNGFQTLGKAKAREWVARCPRNVFRFVE 212
Query: 169 E------------------TQHEAPYNWEAKP--------NK--YF---FNVESAGALKP 197
T E P++ +P NK YF F VES G L
Sbjct: 213 RTGQVEVQDEDACIFCRECTSQEPPFDRLPEPLVFVRQKKNKMGYFDFTFTVESTGVLPV 272
Query: 198 ENIVIMGVTVLKQKLSNLQTQLAHD 222
IV VTV+++KL + L D
Sbjct: 273 LQIVYDAVTVVRRKLQRVSEGLMKD 297
>gi|517290|emb|CAA56480.1| RNA polymerase subunit D [Sulfolobus acidocaldarius]
Length = 264
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 33/237 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTL 59
MA+D V N++ L DE +A R+ L+P SDE ++ +C C + C C L
Sbjct: 39 MAVDEVYFIENNSPLYDEILAHRLALVPFVSDEALEHYRPPEECAECKENCDGCYNRVYL 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
DV+ DQ+ + + DLKS D + PV+ I IV L Q++ L A
Sbjct: 99 DVE-AKDQSLMIYSRDLKSEDQMITPVSG--------------AIPIVLLGSKQKISLEA 143
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS----------ELDE 169
+ G+GKEH K++P + Y P ++ + P+ ++ EL
Sbjct: 144 RLRLGYGKEHIKYSPVSVSIVRYYPKVTVLGNCEKAVEVCPEGVFAMENNKLVVKNELSC 203
Query: 170 TQHEAPYNW-------EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
E + E+ NK+ +ES G+LKPE I+I L +KLS L+++L
Sbjct: 204 ILCEECLKYCAGSVSIESVENKFILEIESVGSLKPERILIEASKSLLRKLSELKSKL 260
>gi|312137109|ref|YP_004004446.1| RNA polymerase insert [Methanothermus fervidus DSM 2088]
gi|311224828|gb|ADP77684.1| RNA polymerase insert [Methanothermus fervidus DSM 2088]
Length = 264
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 23/154 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE-VVDRILYSRDCTCVDFCSECSVEFTL 59
+AI+++++ N++ + DE +A R+GLIPL S+E +V +L +C C +C++CSV FTL
Sbjct: 39 LAIEYIRIVTNTSRMYDEMLAHRLGLIPLRSNEKIVGNLLMPEECDCDKYCAKCSVSFTL 98
Query: 60 DVK--CVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
+ CV V + DL +D + PV ++I I+KL + +++ L
Sbjct: 99 KKQGPCV------VYSGDLVPSDPEIKPVY--------------ENIPIIKLEEDEKIEL 138
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT 151
A A+ G GK+HAKW PT ++Y P ++ T
Sbjct: 139 EAIAQLGLGKKHAKWRPTTACGYKYYPKIIIKDT 172
>gi|408381888|ref|ZP_11179435.1| DNA-directed RNA polymerase subunit D [Methanobacterium formicicum
DSM 3637]
gi|407815336|gb|EKF85921.1| DNA-directed RNA polymerase subunit D [Methanobacterium formicicum
DSM 3637]
Length = 266
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 46/242 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V+ N + DE +A R+GL+PL++D + ++ DC C CS CSV L
Sbjct: 39 LAIETVEFLKNDARIFDEALAHRLGLVPLSTD--TESMVMPEDCDCEGRCSRCSVSLILK 96
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
K + + + DLKS D+ + PV D I +VKL++G+E+ L A
Sbjct: 97 GK----GPKTLYSGDLKSEDSNIKPVL--------------DTIPLVKLKEGEEVELEAI 138
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDP----DNSMRHTLFPKPDEWPKS--EYSE-------- 166
A+ G G +HAKW PT +++ P D E P++ EY E
Sbjct: 139 AQLGLGSDHAKWQPTTTSAYKHYPEITIDQDKCEACLDCVKECPRNVLEYDEKNNQITVV 198
Query: 167 -----------LDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
+ + Q+ A E +K+ F +E+ G+L P ++ +L +K +
Sbjct: 199 DLENCSMCRTCVKDCQNNA-ITVEIVEDKFIFRIETDGSLSPIEVLTRACDILSEKADKI 257
Query: 216 QT 217
T
Sbjct: 258 VT 259
>gi|329766306|ref|ZP_08257853.1| RNA polymerase insert [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137208|gb|EGG41497.1| RNA polymerase insert [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 212
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 92/213 (43%), Gaps = 55/213 (25%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTL 59
AID V + NS+VL DE +A R+GLIPL +D + R C C CS C V L
Sbjct: 41 AIDTVDIIENSSVLPDEGLAHRLGLIPLQTD--LSRFNEPSKCDCKSETGCSNCKVMLVL 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
D D TR + + +L S D V P + D I IV+L GQ +++
Sbjct: 99 D-SGDSDVTRTILSNELTSEDESVKPTS--------------DKIPIVQLAAGQRIKVEC 143
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YA+ G G EHAKWN S S L ET E
Sbjct: 144 YARLGRGTEHAKWN---------------------------SSNISVLTETNKE------ 170
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKL 212
++ +ES GALKPE IV+ GV L +L
Sbjct: 171 ---DERILTIESTGALKPEQIVLAGVDELSNRL 200
>gi|70605933|ref|YP_254803.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
DSM 639]
gi|449066125|ref|YP_007433207.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
N8]
gi|449068401|ref|YP_007435482.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
Ron12/I]
gi|73920766|sp|P39471.2|RPOD_SULAC RecName: Full=DNA-directed RNA polymerase subunit D
gi|68566581|gb|AAY79510.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
DSM 639]
gi|449034633|gb|AGE70059.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
N8]
gi|449036909|gb|AGE72334.1| DNA-directed RNA polymerase subunit D [Sulfolobus acidocaldarius
Ron12/I]
Length = 264
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 107/237 (45%), Gaps = 33/237 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTL 59
MA+D V N++ L DE +A R+ L+P SDE ++ +C C + C C L
Sbjct: 39 MAVDEVYFIENNSPLYDEILAHRLALVPFVSDEALEHYRPPEECAECKENCDGCYNRVYL 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
DV+ DQ + + DLKS D + PV+ I IV L Q++ L A
Sbjct: 99 DVE-AKDQPLMIYSRDLKSEDQMITPVSG--------------AIPIVLLGSKQKISLEA 143
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS----------ELDE 169
+ G+GKEH K++P + Y P ++ + P+ ++ EL
Sbjct: 144 RLRLGYGKEHIKYSPVSVSIVRYYPKVTVLGNCEKAVEVCPEGVFAMENNKLVVKNELSC 203
Query: 170 TQHEAPYNW-------EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
E + E+ NK+ +ES G+LKPE I+I L +KLS L+++L
Sbjct: 204 ILCEECLKYCAGSVSIESVENKFILEIESVGSLKPERILIEASKSLLRKLSELKSKL 260
>gi|330834009|ref|YP_004408737.1| DNA-directed RNA polymerase subunit D [Metallosphaera cuprina Ar-4]
gi|329566148|gb|AEB94253.1| DNA-directed RNA polymerase, subunit D [Metallosphaera cuprina
Ar-4]
Length = 262
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 106/236 (44%), Gaps = 32/236 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTL 59
MA+D V + N++ L DE +A R+GLIP S E +D +C C + C +C + +
Sbjct: 39 MAVDEVYIVENNSPLYDEVLAHRLGLIPFDSREALDFYRRPEECIDCAENCEKCFTKAYI 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+V + Q V + D+++ D V+P++ DI IV L K Q++ L
Sbjct: 99 EVSAEESQV-MVYSKDIRTEDPNVIPISK--------------DIPIVLLGKKQKISLEM 143
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS----------ELDE 169
+ G+GKEHAK+NP Y P + + P +S EL
Sbjct: 144 RMRLGYGKEHAKFNPVTMAIVRYKPKVKVNSNCEKAAEVCPYKVFSYENNELKVENELAC 203
Query: 170 TQHEAPYNW------EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
T E + E +P+KY +ES G+L P I+I + K+ L+ ++
Sbjct: 204 TLCEECVKFCPGITVEPEPDKYVLELESVGSLDPRRILIEATKSILNKVEELKKKV 259
>gi|145528814|ref|XP_001450201.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417801|emb|CAK82804.1| unnamed protein product [Paramecium tetraurelia]
Length = 308
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 117/255 (45%), Gaps = 38/255 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILY--SRDCTCVDFCSECSVEFT 58
MAI +V + N++ LSDEF+A R+GLIPL S D +Y D +D + V FT
Sbjct: 49 MAIHFVDIIENTSPLSDEFLAQRLGLIPLVS-YAADSKMYDWEADADSID-DQKTKVVFT 106
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
L K ++D +T+ L+ +V + R G+ I I +L K Q + +R
Sbjct: 107 LRQKNLNDAPLEITSQHLEPEFGQVGEMAIRPVRMFSPINGKEVGIPITRLGKNQSVHVR 166
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH------TLFPKP---DEWPKSEYSELDE 169
+A KGFGK HAKW P F ++ + + H +LF K D P + ++ +D
Sbjct: 167 CHALKGFGKMHAKWTPINIATFRHEAELNFDHSQTQSLSLFEKQSIRDSCPMNVFA-MDA 225
Query: 170 TQ----------------------HEAP--YNWEAKPNKYFFNVESAGALKPENIVIMGV 205
Q + P + K NKY F VESAG LK +IV +
Sbjct: 226 NQDLIVNAIEKCVFCEECIRCAESMKKPRLIKMQHKKNKYIFTVESAGQLKAADIVQKAL 285
Query: 206 TVLKQKLSNLQTQLA 220
VL++K+ + L+
Sbjct: 286 IVLRKKVDEISQDLS 300
>gi|389593679|ref|XP_003722088.1| DNA-directed RNA polymerase I-like protein [Leishmania major strain
Friedlin]
gi|321438586|emb|CBZ12345.1| DNA-directed RNA polymerase I-like protein [Leishmania major strain
Friedlin]
Length = 337
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 121/265 (45%), Gaps = 55/265 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTC-VDFCSECSVEFTL 59
+AI++V + N++VL DE IA R+GL+PL S++ R+ + +DC C C +C + +L
Sbjct: 45 LAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEK-AKRLNFPQDCGCGGSGCPDCQITGSL 103
Query: 60 DVKCVDDQ-TRHVTTAD-LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
V+C +Q ++ V D L+ DA V PV++ E+G I +V L + Q L L
Sbjct: 104 KVQCPPNQHSKQVFIGDSLQIDDAEVYPVSA-------EEHG----IWLVTLGRSQVLDL 152
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPD-----NSMRHTLFPKPDEW----PKSEYSELD 168
+K K HAK+ P A V Y P+ N + K EW P++ + ++
Sbjct: 153 HVVIRKNIAKTHAKFMPVATVAMRYAPEIILNPNGFQTLGKAKAREWVARCPRNVFRFVE 212
Query: 169 E------------------TQHEAPYNWEAKP--------NK--YF---FNVESAGALKP 197
T E P++ +P NK YF F VES G L
Sbjct: 213 RTGQVEVQDEDACIFCRECTSQEPPFDRLPEPLVFVRQKKNKMGYFDFTFTVESTGVLPV 272
Query: 198 ENIVIMGVTVLKQKLSNLQTQLAHD 222
IV V V+++KL + L D
Sbjct: 273 LQIVYDAVAVVRKKLQRVSEGLMKD 297
>gi|393796020|ref|ZP_10379384.1| RNA polymerase insert [Candidatus Nitrosoarchaeum limnia BG20]
Length = 212
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 92/213 (43%), Gaps = 55/213 (25%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTL 59
AID V + NS+VL DE +A R+GLIPL +D + R C C CS C V L
Sbjct: 41 AIDTVDIIENSSVLPDEGLAHRLGLIPLQTD--LSRFNEPSKCDCKSETGCSNCKVMLVL 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
D D TR + + +L S D V P + D I IV+L GQ +++
Sbjct: 99 D-SGDSDVTRTILSNELTSEDESVKPTS--------------DKIPIVQLAAGQRIKVEC 143
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YA+ G G EHAKWN S S L ET
Sbjct: 144 YARLGRGTEHAKWN---------------------------SSNISVLTETN-------- 168
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKL 212
K ++ +ES GALKPE IV+ GV L +L
Sbjct: 169 -KDDERILTIESTGALKPEQIVLAGVDELSNRL 200
>gi|401416108|ref|XP_003872549.1| DNA-directed RNA polymerase I-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488773|emb|CBZ24020.1| DNA-directed RNA polymerase I-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 337
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 120/265 (45%), Gaps = 55/265 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTC-VDFCSECSVEFTL 59
+AI++V + N++VL DE IA R+GL+PL S + R+ + +DC C C +C + +L
Sbjct: 45 LAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSGK-AKRLNFPQDCGCGGSGCPDCQITGSL 103
Query: 60 DVKCVDDQ-TRHVTTAD-LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
V+C +Q ++ V D L+ DA V PV++ E+G I +V L + Q L L
Sbjct: 104 KVQCPPNQHSKQVFIGDSLQIDDAEVYPVSA-------EEHG----IWLVTLGRSQVLDL 152
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPD-----NSMRHTLFPKPDEW----PKSEYSELD 168
+K K HAK+ P A V Y P+ N + K EW P++ + ++
Sbjct: 153 HVVIRKNIAKTHAKFMPVATVAMRYAPEIILNLNGFQTLGKAKAREWVARCPRNVFRFVE 212
Query: 169 E------------------TQHEAPYNWEAKP--------NK--YF---FNVESAGALKP 197
T E P++ +P NK YF F VES G L
Sbjct: 213 RTGQVEVQDEDACIFCRECTSQEPPFDRLPEPLVFVRQKKNKMGYFDFTFTVESTGVLPV 272
Query: 198 ENIVIMGVTVLKQKLSNLQTQLAHD 222
IV V V+++KL + L D
Sbjct: 273 LQIVYDAVAVVRKKLQRVSEGLMKD 297
>gi|15678067|ref|NP_275181.1| DNA-directed RNA polymerase subunit D [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3122766|sp|O26144.1|RPOD_METTH RecName: Full=DNA-directed RNA polymerase subunit D
gi|2621073|gb|AAB84545.1| DNA-dependent RNA polymerase, subunit D [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 264
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 116/275 (42%), Gaps = 55/275 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRILYSRDCTCVDFCSECSVEFTL 59
+AI++V + N + DE +A R+GL+PL +D E + + +C C ++CSECSV TL
Sbjct: 39 LAIEYVNMYRNDAKMFDEVLAHRLGLVPLAADPEFAESLKMPEECDCEEYCSECSVSLTL 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
K V + DL S V PV DI +VKL EL L A
Sbjct: 99 RKK----GPGVVYSGDLVSETPAVKPVYP--------------DIPLVKLGDDDELELEA 140
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
A+ G G+EHAKW PT ++Y +P+ E+S E E E
Sbjct: 141 VAQLGVGREHAKWEPTTACAYKY----------------YPRIEFS---EDCDECLECIE 181
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNWEAKP 239
A P ++G K + +L+ ++ + +
Sbjct: 182 ACPRD-----------------VLGEESGKPVVVDLENCSMCKSCVRACDKRAIDVGYEE 224
Query: 240 NKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT 274
K+ F +E+ G++ P+++++ +L+ K + T
Sbjct: 225 GKFIFRIETDGSVDPKDVLLKACDILRDKAEQVIT 259
>gi|407464315|ref|YP_006775197.1| RNA polymerase insert [Candidatus Nitrosopumilus sp. AR2]
gi|407047503|gb|AFS82255.1| RNA polymerase insert [Candidatus Nitrosopumilus sp. AR2]
Length = 212
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 94/217 (43%), Gaps = 55/217 (25%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTL 59
AID V + NS+VL DE +A R+GLIPLT+D + R C C CS C V L
Sbjct: 41 AIDTVDIIENSSVLPDEGLAHRLGLIPLTTD--LSRFNEPSKCECQSETGCSNCRVMLVL 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
D D TR V + +L S D + P + D I IV+L GQ +++
Sbjct: 99 D-SGDSDVTRTVLSNELSSEDDSIKPTS--------------DKIPIVQLAPGQRIKIEC 143
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YA+ G G EHAKWN + S L +T+ E
Sbjct: 144 YARLGRGTEHAKWN---------------------------SATISTLTDTEKE------ 170
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+ VES GALKPE I+I GV + ++ +
Sbjct: 171 ---DVKVLTVESTGALKPEQIIISGVDEVSNRIGQFK 204
>gi|407461953|ref|YP_006773270.1| RNA polymerase insert [Candidatus Nitrosopumilus koreensis AR1]
gi|407045575|gb|AFS80328.1| RNA polymerase insert [Candidatus Nitrosopumilus koreensis AR1]
Length = 221
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 96/222 (43%), Gaps = 55/222 (24%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTL 59
AID V + N++VL DE +A R+GLIPL +D + R C C CS C V L
Sbjct: 50 AIDTVDIIENTSVLPDEGLAHRLGLIPLKTD--LSRFNEPSKCECQSEAGCSNCKVMLVL 107
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
D D TR V + ++ S D + P++ D I IV+L GQ++++
Sbjct: 108 D-SGDSDVTRTVLSNEISSEDDSITPIS--------------DKIPIVELAPGQKIKIEC 152
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YA+ G G EHAKWN + S L ET E
Sbjct: 153 YARLGRGTEHAKWN---------------------------SANISMLTETDKE------ 179
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
++ VES GAL PE I++ GV + +LS + +
Sbjct: 180 ---DERILTVESTGALNPEQIILSGVEEVSNRLSEFKDTIGQ 218
>gi|399216931|emb|CCF73618.1| unnamed protein product [Babesia microti strain RI]
Length = 324
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 109/251 (43%), Gaps = 48/251 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N T L DE+IA R+GL+P+ S + + Y C+C D CS+C+V++ L
Sbjct: 48 LAIEIVTVLENDTPLHDEYIAHRLGLLPIDSTRISE-FEYRDKCSCSDKCSKCTVDYNLQ 106
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V C + R VT D ++P D + D I IVK+R+ Q + L+
Sbjct: 107 VTCTE-PFRTVTHLD-------IIP---DEYDTPLPLPRSGDGIPIVKIRRDQSIHLKLT 155
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDP---------------------DNSMRHTLFPKPDEW 159
A KG GK HAKW A V ++ +P + R L + D +
Sbjct: 156 ATKGIGKLHAKW-VVANVAYQIEPLFKINSEMMGRTTQQDRATIASSCPRGILVSEDDNY 214
Query: 160 PK--------------SEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGV 205
S + + + E K+ F+VES GA+ PE IV M +
Sbjct: 215 GGTIRVTNSLECIYCDSCINTCKDLGFKGLIRIEPDETKFHFSVESTGAIAPEKIVEMAL 274
Query: 206 TVLKQKLSNLQ 216
L+ K+ L
Sbjct: 275 GFLEDKIKQLH 285
>gi|170033286|ref|XP_001844509.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Culex
quinquefasciatus]
gi|167873916|gb|EDS37299.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Culex
quinquefasciatus]
Length = 335
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 119/248 (47%), Gaps = 42/248 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GLIPL +D R+ + ++ ++EF L
Sbjct: 82 MAIEKVHIYNNTSIIQDEVLAHRLGLIPLKADP---RLFEYKTNEGDAANAQDTLEFELK 138
Query: 61 VKCV--DDQTRHVTTAD-------LKSTDARVVPV---TSRNRDADMNEYGETDDILIVK 108
VKC + + VT D + S + VPV S ++AD+ DDILI +
Sbjct: 139 VKCTKKNKDSTEVTNNDSMYKNHSIYSGQIKWVPVGNQASIYKEADVGPI--DDDILISR 196
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF------------PKP 156
+R G E ++ +A KG GK+HAK++P A + P+ ++ + P
Sbjct: 197 MRPGHEFDIKLFAVKGVGKDHAKFSPVATASYRLLPEIHLKRPVVGNQALLLQKCFSPGV 256
Query: 157 DEWPKSEYSELDETQHEA-PYNWEAKP------------NKYFFNVESAGALKPENIVIM 203
E K + + + + ++++ N P N + FNVES GALKP+ I +
Sbjct: 257 IEIDKDDQAYVKDARYDSCSRNVYRYPQLADSVTMSRVRNHFIFNVESLGALKPDAIFVE 316
Query: 204 GVTVLKQK 211
VLK+K
Sbjct: 317 AAKVLKKK 324
>gi|340505295|gb|EGR31641.1| hypothetical protein IMG5_105540 [Ichthyophthirius multifiliis]
Length = 307
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 118/267 (44%), Gaps = 44/267 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF-----CSECSV 55
+AI V++ N++ L DE+IA R+GLIPL S V D Y +C C C C+V
Sbjct: 42 IAIQNVKVYENTSCLPDEYIAHRVGLIPLISANV-DNFNYIWNCDCKGSSEGQECDRCAV 100
Query: 56 EFTLDVKCVDDQTRHVTTADLK-----STDARVVPVTSRNRDADMNEYGETDDILIVKLR 110
F L V+ + T VT+ DLK S + V PV + D + I IVKL
Sbjct: 101 HFVLKVQNQGNTTMEVTSLDLKEKFMNSDEDAVRPVKFYSIVPDQMGRQQEVGIPIVKLS 160
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----DNSMRHTLFPKP---DEWPKS 162
K Q++ A KG GK H+KW+ + F+ +P D+ + T K D P
Sbjct: 161 KNQQIHFECEAMKGIGKMHSKWSAVSVASFKIEPLIKFSDDIQQLTREQKKQIVDCCPVK 220
Query: 163 EYS--------ELDETQH-----EAPYNWE---AKP---------NKYFFNVESAGALKP 197
Y E+ Q E + E KP NK+ F VE+ G LKP
Sbjct: 221 VYEINQENDQLEIANLQKCMFCDECVFKCEEEIKKPKLIKIDHNKNKFIFQVETTGVLKP 280
Query: 198 ENIVIMGVTVLKQKLSNLQTQLAHDRV 224
+++ LK+KL ++ Q+ +V
Sbjct: 281 VDVLNRAFRALKEKLVFMKNQIEQYQV 307
>gi|67611563|ref|XP_667165.1| DNA-directed RNA polymerase I [Cryptosporidium hominis TU502]
gi|54658273|gb|EAL36936.1| DNA-directed RNA polymerase I [Cryptosporidium hominis]
Length = 344
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 118/261 (45%), Gaps = 46/261 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ VQ+ N+ V+ DE +A R+GLIP+ D + I + + D + SV F L+
Sbjct: 93 VAIETVQIYQNNGVIQDEVLAHRLGLIPMLIDP--NTIEFRNEDE--DLNEKNSVCFKLN 148
Query: 61 VKCVDDQTRH---VTTADLKSTDARVVPVTSRNRDADMNEYGE------TDDILIVKLRK 111
VKC D H +T+ + S D +P++ R ++G+ TDDILI KLR
Sbjct: 149 VKCTKDDINHEKGITSKAIYSKDLVWIPLSDNQR----KKFGKSPPKVVTDDILITKLRP 204
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW-------PKSEY 164
GQ + Y +K G+ HAKW+P + P+ + D P +
Sbjct: 205 GQSIEAILYCEKNIGRVHAKWSPVCTASYRLLPEFGFPNGPISGSDALKLRDTVCPMKVF 264
Query: 165 SELDETQHEAPYN----------WEAKPNK---------YFFNVESAGALKPENIVIMGV 205
D T + P N E PNK + F++E+ G + P +V +
Sbjct: 265 DIEDVTGNAVPTNPRNCTTCRACIEKFPNKIKLLKDKFHFIFSIETTGCIPPVELVKTAI 324
Query: 206 TVLKQKLSNLQTQLAHDRVFY 226
+L++K +++ + ++FY
Sbjct: 325 DILRKKGEKIKSSV---KLFY 342
>gi|66356630|ref|XP_625493.1| RNA polymerase III C5 subunit [Cryptosporidium parvum Iowa II]
gi|46226487|gb|EAK87481.1| RNA polymerase III C5 subunit [Cryptosporidium parvum Iowa II]
gi|323509937|dbj|BAJ77861.1| cgd8_300 [Cryptosporidium parvum]
Length = 344
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 118/261 (45%), Gaps = 46/261 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ VQ+ N+ V+ DE +A R+GLIP+ D + I + + D + SV F L+
Sbjct: 93 VAIETVQIYQNNGVIQDEVLAHRLGLIPMLIDP--NTIEFRNEDE--DLNEKNSVCFKLN 148
Query: 61 VKCVDDQTRH---VTTADLKSTDARVVPVTSRNRDADMNEYGET------DDILIVKLRK 111
VKC D H +T+ + S D +P++ R ++G+T DDILI KLR
Sbjct: 149 VKCTKDDINHEKGITSKAIYSKDLVWIPLSDNQR----KKFGKTPPKVVTDDILITKLRP 204
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW-------PKSEY 164
GQ + Y +K G+ HAKW+P + P+ + D P +
Sbjct: 205 GQSIEAILYCEKNIGRVHAKWSPVCTASYRLLPEFGFPNGPISGSDALKLRDTVCPMKVF 264
Query: 165 SELDETQHEAPYN----------WEAKPNK---------YFFNVESAGALKPENIVIMGV 205
D T + P N E PNK + F++E+ G + P +V +
Sbjct: 265 DIEDVTGNAVPTNPRNCTTCRACIEKFPNKIKLLKDKFHFIFSIETTGCIPPVELVKTAI 324
Query: 206 TVLKQKLSNLQTQLAHDRVFY 226
+L++K +++ + ++FY
Sbjct: 325 DILRKKGEKIKSSV---KLFY 342
>gi|304314287|ref|YP_003849434.1| DNA-directed RNA polymerase, subunit D [Methanothermobacter
marburgensis str. Marburg]
gi|302587746|gb|ADL58121.1| DNA-directed RNA polymerase, subunit D [Methanothermobacter
marburgensis str. Marburg]
Length = 264
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 108/242 (44%), Gaps = 46/242 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRILYSRDCTCVDFCSECSVEFTL 59
+AI++V + N + DE +A R+GL+PL +D E ++ + +C C ++CSECSV FTL
Sbjct: 39 LAIEYVNMYRNDARMFDEVLAHRLGLVPLKADPEFIEGLKMPEECDCEEYCSECSVSFTL 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
K V + DL S V PV DI +VKL E+ L A
Sbjct: 99 KKK----GPGVVYSRDLLSETPAVEPVYP--------------DIPLVKLGDEDEVELEA 140
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDP---------------DNSMRHTLFPKPDEWPKSEY 164
A+ G G++HAKW PT ++Y P D R L DE K E
Sbjct: 141 VAQLGVGRDHAKWEPTTACAYKYYPMITFTEECDECLECVDACPRGVL---GDESGKPEV 197
Query: 165 SELDETQH---------EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
+++ + + K+ F +E+ G++ P+++++ +L+ K +
Sbjct: 198 LDVENCSMCKSCVRACDKGAIIVGYEEGKFIFRIETDGSVDPQDVLLKACDILRDKAERV 257
Query: 216 QT 217
T
Sbjct: 258 IT 259
>gi|50285441|ref|XP_445149.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524452|emb|CAG58049.1| unnamed protein product [Candida glabrata]
Length = 334
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 124/255 (48%), Gaps = 43/255 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRILYSRDCTCVDFCSECSVEFTL 59
+A ++V ++ N++V+ DE +A RIGL+PL D E ++R L + D ++F + ++ TL
Sbjct: 78 VAPEYVYIQNNTSVIQDEVLAHRIGLVPLKVDPEKLER-LDTSDPDNLEFHDKNTIVMTL 136
Query: 60 DVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKL 109
+VKC D T A + + D + P +S+ AD DIL+ KL
Sbjct: 137 NVKCTRNPDAPKDCTDPTILYNNAHVYARDLKFEPHSSQVETFADCPVVPCDPDILLAKL 196
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP----------DNSMR-HTLFPKPDE 158
R GQE+ L + G GK+HAK++P A + P D++ R FPK
Sbjct: 197 RPGQEISLSTHCILGEGKDHAKFSPVATASYRLLPHIEILEPITGDSAKRFQACFPKGVI 256
Query: 159 W-----------PKSEYSELDETQHEAPYNWEAK------PNKYFFNVESAGALKPENIV 201
P+ + + +HE +E K + + FNVES GA++PE+IV
Sbjct: 257 GINENGEAYVLDPRKDTVSREVLRHE---EFEGKVKLGRVRDHFVFNVESTGAMQPEDIV 313
Query: 202 IMGVTVLKQKLSNLQ 216
+ + +LK+K L+
Sbjct: 314 LKSIDILKKKAEYLK 328
>gi|161527936|ref|YP_001581762.1| RNA polymerase insert [Nitrosopumilus maritimus SCM1]
gi|160339237|gb|ABX12324.1| RNA polymerase insert [Nitrosopumilus maritimus SCM1]
Length = 221
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 94/217 (43%), Gaps = 55/217 (25%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTL 59
A+D V + NS+VL DE +A R+GLIPL +D + R C C CS C V L
Sbjct: 50 AVDTVDIIENSSVLPDEGLAHRLGLIPLKTD--LSRFNEPSKCECQSETGCSNCKVMLVL 107
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
D D TR V + +L S D + P++ D I IV+L GQ +++
Sbjct: 108 D-SGDSDVTRTVLSNELSSEDDSITPIS--------------DKIPIVELAPGQRIKVEC 152
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YA+ G G EHAKWN + S L ET
Sbjct: 153 YARLGRGTEHAKWN---------------------------SANVSMLTETD-------- 177
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
K ++ VES GAL PE I++ GV + +L+ +
Sbjct: 178 -KDDERILTVESTGALNPEQIILSGVEEVGHRLAEFK 213
>gi|386876610|ref|ZP_10118709.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein [Candidatus
Nitrosopumilus salaria BD31]
gi|386805572|gb|EIJ65092.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein [Candidatus
Nitrosopumilus salaria BD31]
Length = 221
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 94/220 (42%), Gaps = 55/220 (25%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFTL 59
AID V + NS+VL DE +A R+GLIPL +D + R C C CS C V L
Sbjct: 50 AIDTVDIVENSSVLPDEGLAHRLGLIPLKTD--LARFNEPSKCECQSETGCSNCKVMLVL 107
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
D D TR + + +L S D V PV+ D I IV+L GQ +++
Sbjct: 108 D-SGDSDVTRTILSNELSSEDDTVKPVS--------------DKIPIVQLAPGQRIKVEC 152
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YA+ G G EHAKWN T + L +T E
Sbjct: 153 YARLGRGTEHAKWNAT---------------------------NIATLTDTDKE------ 179
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++ +ES GAL PE I+I GV + +L + +
Sbjct: 180 ---DEKILTIESTGALSPEQIIISGVDEVNNRLGQFKEMI 216
>gi|336477128|ref|YP_004616269.1| RNA polymerase insert [Methanosalsum zhilinae DSM 4017]
gi|335930509|gb|AEH61050.1| RNA polymerase insert [Methanosalsum zhilinae DSM 4017]
Length = 264
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 110/241 (45%), Gaps = 42/241 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N++VL DE + R+ LIPLT++ +D + +C C D C C + TL
Sbjct: 41 LAIDEVNVYNNTSVLYDEQLGLRLALIPLTAN--MDDYIPKDECNCEDVCPACELSLTLS 98
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V + + V + D S D V P S +I I+ L++GQ+L + A
Sbjct: 99 V----EGPKMVYSGDFVSADPEVRPADS--------------NIPIIDLKEGQKLFIEAL 140
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT--LFPKPDEWPK---------SEYSELD- 168
A G+GKEHAKW G ++ P S + +E PK +E S D
Sbjct: 141 AHAGYGKEHAKWQAGVGCGYKNYPIVSFTNCDQCGTCIEECPKEIIKMGPAGAEISSEDL 200
Query: 169 ------ETQHEA----PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
+T EA + + + FN+ES G+ E ++I V+++K S +Q
Sbjct: 201 LKCTLCKTCAEACGINAVSVNQSESSFIFNMESDGSYTSEELIINAGKVIRKKASEMQDI 260
Query: 219 L 219
L
Sbjct: 261 L 261
>gi|390348474|ref|XP_795508.3| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Strongylocentrotus purpuratus]
Length = 350
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 120/260 (46%), Gaps = 44/260 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL-YSRDCTCVD--FCSECSVEF 57
MAI+ V + N++++ DE +A R+GLIP+ +D RI Y + D E ++EF
Sbjct: 84 MAIEKVSIFNNTSIIQDEILAHRLGLIPIKADP---RIFEYREEVNTGDETGTGEDTIEF 140
Query: 58 TLDVKCVDD--QTRHVTTADLKSTDARV-------VPVTSRNRDADMNEYGETD-DILIV 107
L VKC + ++ T D +A+V +P+ ++ + + DILI
Sbjct: 141 QLKVKCTKNPNASKDATDPDELYKNAKVTTEHFKWIPLENQEETYGPKAFAPVNKDILIA 200
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE- 166
KLR GQE+ L+ + KG GK+HAK++P A + P+ + + + + + +S
Sbjct: 201 KLRPGQEIDLKMHCVKGIGKDHAKFSPVATASYRLMPEIILTEDIVGERAKKLQQCFSSG 260
Query: 167 -LD-ETQHEAPYNWEAKPNK-------------------------YFFNVESAGALKPEN 199
+D E ++ P A P + + F+VES GAL+PE
Sbjct: 261 VIDVEKRNGVPVAVVACPRRDTCGREVFSHDDLKDCVKLNRIRDHFIFSVESTGALRPEV 320
Query: 200 IVIMGVTVLKQKLSNLQTQL 219
+V + +LK K Q L
Sbjct: 321 LVSEAINILKSKCKTFQQDL 340
>gi|195386486|ref|XP_002051935.1| GJ24400 [Drosophila virilis]
gi|194148392|gb|EDW64090.1| GJ24400 [Drosophila virilis]
Length = 333
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 37/246 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GL+PL +D + Y + + + ++E+ L
Sbjct: 79 MAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRL--FAYRTEESTEQGTEQDTLEYELK 136
Query: 61 VKCV--DDQTRHVTTAD-------LKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLR 110
VKC D ++ + D + S + +P + + N G +DILI +LR
Sbjct: 137 VKCTRRKDASKDQSNFDDIYKNHKVYSGHLKWLPKGKQGQIYTENSVGCIHEDILIAQLR 196
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE--LD 168
G EL LR A KG GK+HAK++P A + P ++ + K +S +S +
Sbjct: 197 PGHELDLRLIAVKGLGKDHAKFSPVATAYYRLLPQINLTREVTGKDAYLLQSCFSPGVIG 256
Query: 169 ETQHEAPYNWEAK-----------------------PNKYFFNVESAGALKPENIVIMGV 205
++E Y +A+ + Y FNVES GALKPE I + V
Sbjct: 257 IDENECAYVKDARYDSCSRNVYRYPHLADAVTMARVRDHYIFNVESVGALKPEVIFLEAV 316
Query: 206 TVLKQK 211
VLK+K
Sbjct: 317 KVLKKK 322
>gi|300122175|emb|CBK22749.2| unnamed protein product [Blastocystis hominis]
Length = 312
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 111/257 (43%), Gaps = 46/257 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL------TSDEVVDRILYSRDCTCVDFCSECS 54
+AI V ++ N++VL+D++IA R+GLIP+ +S E+VD S + S
Sbjct: 45 VAIRTVTIKENTSVLADDYIAHRLGLIPIRHLGDDSSTEIVDYFEVSAPG------NRSS 98
Query: 55 VEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQE 114
V L+ C D+ +VT+ LKS + P + ++ + + E I IV L GQ
Sbjct: 99 VRLELNETCTGDRPLNVTSKHLKSLNPYYAPAHATSQAEALAQNNE--GIRIVSLAPGQT 156
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKP---------DEWPKSEYS 165
L + A G GKEHAKW+P V +Y P + L D P+ +S
Sbjct: 157 LHVECEAILGVGKEHAKWSPVGTVSMKYVPIVHLNRDLLDSKDFEFKQKLVDSCPRKVFS 216
Query: 166 ELDETQHEAPYNWEA-----------------------KPNKYFFNVESAGALKPENIVI 202
+T N A +PN + F VE GAL P I+
Sbjct: 217 INPDTNRVTIVNESACMFCGDCEAFNTSYADKIVTISQQPNVFKFVVEGTGALPPLEILK 276
Query: 203 MGVTVLKQKLSNLQTQL 219
+ VL+ KL+ ++ L
Sbjct: 277 KALEVLEMKLNRIKHGL 293
>gi|284998561|ref|YP_003420329.1| RNA polymerase, insert [Sulfolobus islandicus L.D.8.5]
gi|284446457|gb|ADB87959.1| RNA polymerase, insert [Sulfolobus islandicus L.D.8.5]
Length = 265
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 33/239 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTL 59
M+ID V N++ L DE +A R+ LIP TS+E +D + +C C + C +C + +
Sbjct: 39 MSIDDVYFIENNSPLYDEILAHRLALIPFTSEEALDTYRWPEECIECTENCEKCYTKIYI 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+ + + ++ + + + D+KS D +VP++ DI IV L Q++ L A
Sbjct: 99 EAEAL-NEPKMLYSKDIKSEDPSIVPISG--------------DIPIVLLGANQKISLEA 143
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEY----------SELDE 169
+ G+GKEHAK+ P + Y P + P+ + +EL
Sbjct: 144 RLRLGYGKEHAKFIPVSLAIVRYYPKVEILGNCEKAATVCPEGVFELKDGKLSVKNELAC 203
Query: 170 TQHEAPYNW-------EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
T E + + +KY ++ES G+LKPE I++ + +K+ L+ +L
Sbjct: 204 TLCEECLRYCNGLIRISSIEDKYILDLESVGSLKPERILLEAGKSIIRKIEELEKKLVE 262
>gi|15897038|ref|NP_341643.1| DNA-directed RNA polymerase subunit D (rpoD) [Sulfolobus
solfataricus P2]
gi|284173382|ref|ZP_06387351.1| DNA-directed RNA polymerase, subunit D (rpoD) [Sulfolobus
solfataricus 98/2]
gi|384433538|ref|YP_005642896.1| RNA polymerase insert [Sulfolobus solfataricus 98/2]
gi|2500627|sp|P95989.1|RPOD_SULSO RecName: Full=DNA-directed RNA polymerase subunit D
gi|167013264|pdb|2PA8|D Chain D, X-Ray Crystal Structure Of The DL SUBCOMPLEX OF THE
SULFOLOBUS Solfataricus Rna Polymerase
gi|167744884|pdb|2PMZ|D Chain D, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744895|pdb|2PMZ|S Chain S, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782146|pdb|3HKZ|D Chain D, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782159|pdb|3HKZ|O Chain O, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|1707823|emb|CAA69531.1| DNA-directed RNA polymerase subunit D [Sulfolobus solfataricus P2]
gi|13813203|gb|AAK40433.1| DNA-directed RNA polymerase, subunit D (rpoD) [Sulfolobus
solfataricus P2]
gi|261601692|gb|ACX91295.1| RNA polymerase insert [Sulfolobus solfataricus 98/2]
Length = 265
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 108/239 (45%), Gaps = 33/239 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTL 59
MA+D V N++ L DE +A R+ LIP S+E +D + +C C + C +C + +
Sbjct: 39 MAVDDVYFIENNSPLYDEILAHRLALIPFMSEEALDTYRWPEECIECTENCEKCYTKIYI 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+ + ++ R + + D+KS D VVP++ DI IV L Q++ L A
Sbjct: 99 EAE-APNEPRMIYSKDIKSEDPSVVPISG--------------DIPIVLLGTNQKISLEA 143
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEY----------SELDE 169
+ G+GKEHAK+ P + Y P + + P+ + +EL
Sbjct: 144 RLRLGYGKEHAKFIPVSLSVVRYYPKVEILANCEKAVNVCPEGVFELKDGKLSVKNELSC 203
Query: 170 TQHEAPYNW-------EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
T E + +KY +ES G+LKPE I++ + +K+ L+ +L
Sbjct: 204 TLCEECLRYCNGSIRISFVEDKYILEIESVGSLKPERILLEAGKSIIRKIEELEKKLVE 262
>gi|269860747|ref|XP_002650092.1| DNA-directed RNA polymerases I, II, and III, subunit 3
[Enterocytozoon bieneusi H348]
gi|220066464|gb|EED43944.1| DNA-directed RNA polymerases I, II, and III, subunit 3
[Enterocytozoon bieneusi H348]
Length = 245
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 113/218 (51%), Gaps = 25/218 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID++++E N+++ DE +A+R+G +PL E + + +CTC ++C +C++ L+
Sbjct: 41 VAIDYIEVEENTSIFPDEMLANRLGFLPL---ENKNNLKDKNNCTCENYCDDCALVLILN 97
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ +V DL + R A++ ++ I KL Q L+++
Sbjct: 98 KTNKTSENINVLGKDL--------IIEGSGRPANL-----LNNTFICKLAPNQTLKIKCI 144
Query: 121 AKKGFGKE----HAKWNPTAGVCFEYDPDNSMRHT-LFPKPDEWPKSEYSELDETQHEAP 175
A+KG + HAK+ P + V F YD +N+ +HT L+ + E K + ++E E
Sbjct: 145 ARKGLVRNGSITHAKYCPVSAVSFYYDKNNAKKHTNLWTENQETIKETWPFINEDPTEFD 204
Query: 176 YNWEAKPNKYFFNVESA-GALKPENIVIMGVTVLKQKL 212
Y +K ++ NVE G KP++I+ +++ K+K+
Sbjct: 205 Y---SKVDQITMNVEIVEGVGKPKDILYKALSIYKEKM 239
>gi|227828307|ref|YP_002830087.1| RNA polymerase insert [Sulfolobus islandicus M.14.25]
gi|229585537|ref|YP_002844039.1| RNA polymerase insert [Sulfolobus islandicus M.16.27]
gi|238620499|ref|YP_002915325.1| RNA polymerase insert [Sulfolobus islandicus M.16.4]
gi|385773987|ref|YP_005646554.1| RNA polymerase, subunit D [Sulfolobus islandicus HVE10/4]
gi|385776629|ref|YP_005649197.1| RNA polymerase insert [Sulfolobus islandicus REY15A]
gi|259494206|sp|C3N054.1|RPOD_SULIA RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494207|sp|C4KJ93.1|RPOD_SULIK RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494209|sp|C3MZ05.1|RPOD_SULIM RecName: Full=DNA-directed RNA polymerase subunit D
gi|227460103|gb|ACP38789.1| RNA polymerase insert [Sulfolobus islandicus M.14.25]
gi|228020587|gb|ACP55994.1| RNA polymerase insert [Sulfolobus islandicus M.16.27]
gi|238381569|gb|ACR42657.1| RNA polymerase insert [Sulfolobus islandicus M.16.4]
gi|323475377|gb|ADX85983.1| RNA polymerase insert [Sulfolobus islandicus REY15A]
gi|323478102|gb|ADX83340.1| RNA polymerase, subunit D [Sulfolobus islandicus HVE10/4]
Length = 265
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 110/239 (46%), Gaps = 33/239 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTL 59
M+ID V N++ L DE +A R+ LIP TS+E +D + +C C + C +C + +
Sbjct: 39 MSIDDVYFIENNSPLYDEILAHRLALIPFTSEEALDTYRWPEECIECTENCEKCYTKIYI 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+ + + ++ + + + D+KS D +VP++ DI IV L Q++ L A
Sbjct: 99 EAEAL-NEPKMLYSKDIKSEDPSIVPISG--------------DIPIVLLGANQKISLEA 143
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEY----------SELDE 169
+ G+GKEHAK+ P + Y P + P+ + +EL
Sbjct: 144 RLRLGYGKEHAKFIPVSLAIVRYYPKVEILGNCEKAATVCPEGVFELKDGKLSVKNELAC 203
Query: 170 TQHEAPYNW-------EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
T E + + +KY +ES G+LKPE I++ + +K+ L+ +L
Sbjct: 204 TLCEECLRYCNGLIRISSIEDKYILELESVGSLKPERILLEAGKSIIRKIEELEKKLVE 262
>gi|227831065|ref|YP_002832845.1| RNA polymerase insert [Sulfolobus islandicus L.S.2.15]
gi|229579946|ref|YP_002838345.1| RNA polymerase insert [Sulfolobus islandicus Y.G.57.14]
gi|229581393|ref|YP_002839792.1| RNA polymerase insert [Sulfolobus islandicus Y.N.15.51]
gi|259494208|sp|C3MJP7.1|RPOD_SULIL RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494210|sp|C3NMQ0.1|RPOD_SULIN RecName: Full=DNA-directed RNA polymerase subunit D
gi|259494211|sp|C3N8R8.1|RPOD_SULIY RecName: Full=DNA-directed RNA polymerase subunit D
gi|227457513|gb|ACP36200.1| RNA polymerase insert [Sulfolobus islandicus L.S.2.15]
gi|228010661|gb|ACP46423.1| RNA polymerase insert [Sulfolobus islandicus Y.G.57.14]
gi|228012109|gb|ACP47870.1| RNA polymerase insert [Sulfolobus islandicus Y.N.15.51]
Length = 265
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 110/239 (46%), Gaps = 33/239 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTL 59
M+ID V N++ L DE +A R+ LIP TS+E +D + +C C + C +C + +
Sbjct: 39 MSIDDVYFIENNSPLYDEILAHRLALIPFTSEEALDTYRWPEECIECTENCEKCYTKIYI 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+ + + ++ + + + D+KS D +VP++ DI IV L Q++ L A
Sbjct: 99 EAEAL-NEPKMLYSKDIKSEDPSIVPISG--------------DIPIVLLGANQKISLEA 143
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEY----------SELDE 169
+ G+GKEHAK+ P + Y P + P+ + +EL
Sbjct: 144 RLRLGYGKEHAKFIPVSLAIVRYYPKVEILGNCEKAATVCPEGVFELKDGKLSVKNELAC 203
Query: 170 TQHEAPYNW-------EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
T E + + +KY +ES G+LKPE I++ + +K+ L+ +L
Sbjct: 204 TLCEECLRYCNGLIRISSIEDKYILELESVGSLKPERILLEAGKSIIRKIEELEKKLVE 262
>gi|237823480|pdb|2WAQ|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823493|pdb|2WB1|D Chain D, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823508|pdb|2WB1|S Chain S, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462791|pdb|2Y0S|D Chain D, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462806|pdb|2Y0S|S Chain S, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260745|pdb|4AYB|D Chain D, Rnap At 3.2ang
gi|400260762|pdb|4B1O|D Chain D, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260781|pdb|4B1P|S Chain S, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814435|gb|ACL36491.1| RNA polymerase subunit 3 [Sulfolobus shibatae B12]
Length = 265
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 110/239 (46%), Gaps = 33/239 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTL 59
M+ID V N++ L DE +A R+ LIP TS+E +D + +C C + C +C + +
Sbjct: 39 MSIDDVYFIENNSPLYDEILAHRLALIPFTSEEALDTYRWPEECIDCTENCEKCYTKIYI 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+ + + ++ + + + D+KS D +VP++ DI IV L Q++ L A
Sbjct: 99 EAEAL-NEPKMLYSKDIKSEDPSIVPISG--------------DIPIVLLGANQKISLEA 143
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEY----------SELDE 169
+ G+GKEHAK+ P + Y P + P+ + +EL
Sbjct: 144 RLRLGYGKEHAKFIPVSLAIVRYYPKVEILGNCEKGATVCPEGVFELKDGKLSVKNELAC 203
Query: 170 TQHEAPYNW-------EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
T E + + +KY +ES G+LKPE I++ + +K+ L+ +L
Sbjct: 204 TLCEECLRYCNGLIRISSVEDKYILELESVGSLKPERILLEAGKSIIRKIEELEKKLVE 262
>gi|154151761|ref|YP_001405379.1| DNA-directed RNA polymerase subunit D [Methanoregula boonei 6A8]
gi|154000313|gb|ABS56736.1| DNA-directed RNA polymerase [Methanoregula boonei 6A8]
Length = 276
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 50/248 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTL 59
+AI+ V++ N++ L DE +A R+GLIP+ +D + DC+C C C+V +TL
Sbjct: 39 LAIEDVRIYDNTSALFDEMLAHRLGLIPIRTD--LTSYSTQGDCSCGGAGCPSCTVTYTL 96
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V + + VT++DL D + PV+ D+I IVKL KGQ+L + A
Sbjct: 97 SV----EGPKLVTSSDLIPQDPQAAPVS--------------DNIPIVKLIKGQKLVIEA 138
Query: 120 YAKKGFGKEHAKWNPT-------------------AGVCFEYDPDNSMR---------HT 151
A GK HAKW PT G+C + P +
Sbjct: 139 RAVLNKGKVHAKWQPTLVCGYKNYPVITISPTCDACGMCVDECPRTILALKGKKVEVIEG 198
Query: 152 LFPKPDEWPKSEYSELDETQHEAP-YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQ 210
P E + L E P A+P++Y F+VES G+L + I++ + +K
Sbjct: 199 RLPDCSMCKLCERACLASGIGEEPAIRISAEPDRYIFSVESDGSLPVKEIMVQALGFVKA 258
Query: 211 KLSNLQTQ 218
+ L+ Q
Sbjct: 259 QAEELEKQ 266
>gi|374633843|ref|ZP_09706208.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Metallosphaera yellowstonensis MK1]
gi|373523631|gb|EHP68551.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Metallosphaera yellowstonensis MK1]
Length = 262
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 104/236 (44%), Gaps = 32/236 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC-TCVDFCSECSVEFTL 59
MA+D V + N++ L DE +A R+ LIP S++ +D +C C + C C + +
Sbjct: 39 MAVDEVYVIENNSPLYDEVLAHRLALIPFESNDAIDYYRRPEECENCTENCERCFTKIYI 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
DV + Q + V + D+K+ D VVP++ DI IV L K Q++ L A
Sbjct: 99 DVSAEETQ-KMVYSRDIKTEDPHVVPISR--------------DIPIVLLGKNQKVSLEA 143
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEY----------SELDE 169
+ G+GKEHAK+ P + Y P + + P+ + +EL
Sbjct: 144 KVRLGYGKEHAKFMPVSKAVSRYRPKVEVEKNCEKAVEVCPEGVFKLVDGKLTVENELAC 203
Query: 170 TQHEAPYNW------EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
T E + A P +Y VES G L I+I + K+ L+ ++
Sbjct: 204 TLCEECLKYCQGIKVSAVPGEYILEVESVGTLDARRILIEATKSILSKVEELKKKV 259
>gi|157116377|ref|XP_001658447.1| DNA-directed RNA polymerase [Aedes aegypti]
gi|108876498|gb|EAT40723.1| AAEL007568-PA [Aedes aegypti]
Length = 335
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 118/248 (47%), Gaps = 42/248 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GLIPL +D R+ + + ++EF L
Sbjct: 82 MAIEKVHIYNNTSIIQDEVLAHRLGLIPLRADP---RLFEYKTNENDPPNALDTLEFELK 138
Query: 61 VKCV--DDQTRHVTTAD-------LKSTDARVVPV---TSRNRDADMNEYGETDDILIVK 108
VKC + + +T D + S + +PV S ++AD+ DDILI K
Sbjct: 139 VKCTKKNKDSTEITNNDSMYKNHSIYSGQIKWIPVGNQASIYKEADVGPI--DDDILISK 196
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSM------RHTLF------PKP 156
+R G E ++ +A KG GK+HAK++P A + P+ + R L P
Sbjct: 197 MRPGHEFDIKLFAMKGIGKDHAKFSPVATASYRLLPEVRLTRPVVGRDALLLQKCFSPGV 256
Query: 157 DEWPKSEYSELDETQHEA-PYNWEAKP------------NKYFFNVESAGALKPENIVIM 203
E K + + + + ++++ N P N + FNVES GALKP+ I +
Sbjct: 257 IEIDKDDQAYVKDARYDSCSRNVYRYPQIADAVTLSRVRNHFIFNVESLGALKPDVIFVE 316
Query: 204 GVTVLKQK 211
VLK+K
Sbjct: 317 AAKVLKKK 324
>gi|401400700|ref|XP_003880837.1| rna polymerase II, related [Neospora caninum Liverpool]
gi|325115249|emb|CBZ50804.1| rna polymerase II, related [Neospora caninum Liverpool]
Length = 346
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 115/243 (47%), Gaps = 41/243 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ VQ+ N+ V+ DE +A R+GLIP VVD + +F E ++ +L
Sbjct: 97 IAIETVQIWQNTGVVQDEVLAHRLGLIPF----VVDPTALNYRQPNQEFTDENALRVSLH 152
Query: 61 VKCVDDQTR-HVTTADLKSTDARVVPVTSRNRDADMNEYGET--DDILIVKLRKGQELRL 117
VKC + H T+ + + D + P++ ++A DILI KLR GQE+ L
Sbjct: 153 VKCTEQSLGPHQTSLPVYARDIKWEPMSPSQKEAFAANPPRAVHPDILITKLRPGQEIEL 212
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSE---------YSELD 168
+AY +KG GK HAKW+P + +P+ +F +P + ++ +++
Sbjct: 213 KAYLEKGVGKTHAKWSPVCTAVYRLEPE-----IVFKEPIQGEEASDLCSLCPMGVFDVE 267
Query: 169 ETQHEA----PYNW-------EAKPN---------KYFFNVESAGALKPENIVIMGVTVL 208
+T EA P N E PN + F++ES G++ + M + +L
Sbjct: 268 DTTGEAYARYPRNCTTCRACIERFPNGIELRKIKDHFIFSIESTGSVPAPLLFKMAIEIL 327
Query: 209 KQK 211
K+K
Sbjct: 328 KEK 330
>gi|189239160|ref|XP_971966.2| PREDICTED: similar to CG3756 CG3756-PA [Tribolium castaneum]
Length = 338
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 117/259 (45%), Gaps = 40/259 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GLIPL +D + + R + + + ++EF L
Sbjct: 81 MAIEKVHILNNTSIIQDEVLAHRLGLIPLKADPRLFEMKTDRKSSTAEGTEQDTLEFALK 140
Query: 61 VKCVD--DQTRHVTTAD-------LKSTDARVVPV-TSRNRDADMNEYGETDDILIVKLR 110
+KC + D ++ A+ + S + VP+ + R +D+ DILI K+R
Sbjct: 141 IKCTNNKDSSKDSLRAEDMYKNNNVYSKHIKWVPIGKQKERFSDVGPIHP--DILIAKMR 198
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE-LDE 169
G EL L+ A K G++HAK++P A + PD + + + E + +S +
Sbjct: 199 PGHELDLKLLAVKSNGRDHAKFSPVATAFYRLLPDIKLLREVEGEAAERLQKCFSPGVIS 258
Query: 170 TQHEAPYNWEAKPN---------------------------KYFFNVESAGALKPENIVI 202
+HE + N + F VES GAL P+ I +
Sbjct: 259 IRHEKGRKYAVVANARYDTGSRNVFRYEDLKDAVAMTKIQDHFIFTVESVGALPPDVIFM 318
Query: 203 MGVTVLKQKLSNLQTQLAH 221
V +LK K L +L+H
Sbjct: 319 EAVKILKDKCLALLDELSH 337
>gi|156089735|ref|XP_001612274.1| DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein [Babesia bovis]
gi|154799528|gb|EDO08706.1| DNA-directed RNA polymerase, alpha subunit, N terminal domain
containing protein [Babesia bovis]
Length = 319
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 114/257 (44%), Gaps = 42/257 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N+ V+ DE +A R+GL+P + D I Y RD D + SV F L
Sbjct: 72 LAIESVHIYQNTGVIQDEVLAHRLGLVPFDCNP--DLIPY-RDNE--DLSDKNSVCFHLK 126
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRD--ADMNEYGETDDILIVKLRKGQELRLR 118
V+C + T + + D + VP++ + D DIL+ KL GQE+ L+
Sbjct: 127 VECKKESLAGRTNLPVYAGDMKWVPLSDEQAELFKDNPPKPIHKDILLTKLSPGQEIDLK 186
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEA---- 174
AY +KG GK HAKW+P + + PD + F + + E EL +
Sbjct: 187 AYLEKGIGKTHAKWSPVCTAVYRFKPDIT-----FSEDEPLTNDEVEELVQICPMGVFSA 241
Query: 175 ---------PYN-------WEAKP---------NKYFFNVESAGALKPENIVIMGVTVLK 209
PYN E P N + F+VES GA+ + + + VLK
Sbjct: 242 DKGRITTIRPYNCTSCRACLERFPKRVIIKKLSNHFIFSVESTGAIPSGQLFLKAIGVLK 301
Query: 210 QKLSNLQTQLAHDRVFY 226
+K L+ ++ D + Y
Sbjct: 302 EKSQKLKRRMV-DAISY 317
>gi|284162138|ref|YP_003400761.1| RNA polymerase insert [Archaeoglobus profundus DSM 5631]
gi|284012135|gb|ADB58088.1| RNA polymerase insert [Archaeoglobus profundus DSM 5631]
Length = 261
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 104/232 (44%), Gaps = 42/232 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV-DFCSECSVEFTL 59
MA+D+V N++ L DE IA RIGLIP+ +D ++R C C + C C V F L
Sbjct: 39 MAVDYVVFYMNTSFLYDEIIAHRIGLIPIKTD--LERFNMPDKCVCGGEGCPNCQVSFRL 96
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+V + + V + DL S D + PV D+I IV+L +GQ+L + A
Sbjct: 97 NV----EGPKVVYSGDLISEDPEIKPVY--------------DNIPIVELYEGQQLMIEA 138
Query: 120 YAKKGFGKEHAKWNPTA-------------------GVCFEYDPDNSMR-HTLFPKPDEW 159
A+ G GKEHAK+ P + G C P N +R + D
Sbjct: 139 VARLGTGKEHAKYQPVSACYYKIIPEIIVKDNCNNCGNCVSACPRNILRLNGKVEVTDIL 198
Query: 160 PKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 211
S E + E + + + Y F VE GAL + ++ + +LK+K
Sbjct: 199 SCSMCRECVKVCEENAIDV-VETDNYLFAVEGTGALPVKVVMKKALEILKEK 249
>gi|195035209|ref|XP_001989070.1| GH11517 [Drosophila grimshawi]
gi|193905070|gb|EDW03937.1| GH11517 [Drosophila grimshawi]
Length = 333
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 116/247 (46%), Gaps = 39/247 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTL 59
MAI+ V + N++++ DE +A R+GL+PL +D R+ R + SE ++E+ L
Sbjct: 79 MAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADP---RLFAYRSEESTEQGSEQDTLEYEL 135
Query: 60 DVKCV--DDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGET------DDILIVKL 109
VKC D T+ + D + +V + + Y E+ DDILI +L
Sbjct: 136 KVKCTRRKDATKEQSNFDDIYKNHKVYSGHLKWLPKGKQGQIYSESSVNCIHDDILIAQL 195
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE--L 167
R G EL LR A KG GK+HAK++P A + P ++ + K ++ +S +
Sbjct: 196 RPGHELDLRLIAVKGIGKDHAKFSPVATAFYRLLPQITLTREVSGKDAYLLQNCFSPGVI 255
Query: 168 DETQHEAPYNWEAK-----------------------PNKYFFNVESAGALKPENIVIMG 204
++E Y +A+ + Y F+VES GALKPE I +
Sbjct: 256 GIDENECAYVKDARYDSCSRNVYRYPQLADAVIMARVRDHYIFSVESVGALKPEVIFLEA 315
Query: 205 VTVLKQK 211
V VLK+K
Sbjct: 316 VKVLKKK 322
>gi|405978280|gb|EKC42685.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Crassostrea
gigas]
Length = 472
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 17/156 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GLIP+ +D L+ DF E ++ F L
Sbjct: 84 MAIEKVHIYNNTSIIQDEVLAHRLGLIPIKADPR----LFEYKSEGEDFSPEDTIIFQLK 139
Query: 61 VKCV-DDQTRHVTTADLKSTDARV-------VPVTSRN---RDADMNEYGETDDILIVKL 109
VKC + Q + T D D +V +P+ ++ ++ D+ DDILI KL
Sbjct: 140 VKCTKNSQAKDTTDPDEMYKDHKVTTKHLKWIPMKGQDTIFKEGDLRPVN--DDILIAKL 197
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
R GQE+ +R + KG GK+HAK++P A + P+
Sbjct: 198 RPGQEIDIRVFCNKGIGKDHAKFSPVATASYRLLPE 233
>gi|195437356|ref|XP_002066606.1| GK24584 [Drosophila willistoni]
gi|194162691|gb|EDW77592.1| GK24584 [Drosophila willistoni]
Length = 332
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 119/246 (48%), Gaps = 37/246 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GL+PL +D + Y + + + + ++E+ L
Sbjct: 78 MAIEKVYIYNNTSIIQDEVLAHRMGLLPLKADPRL--FTYRTEESPENGTEQDTLEYELK 135
Query: 61 VKCV--DDQTRHVTTADLKSTDARV-------VPVTSRNRDADMNEYGET-DDILIVKLR 110
VKC D ++ +T D + +V +P + + + G +DILI +LR
Sbjct: 136 VKCTRRKDASKDQSTFDEIYKNHKVFSGHLKWLPKGKQGQIYTESSVGCIHEDILIAQLR 195
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE---- 166
G E+ LR A KG GK+HAK++P A + P + + K +S +S
Sbjct: 196 PGHEMDLRLIAVKGLGKDHAKFSPVATAYYRLLPLIKLNREVSGKDAYLLQSCFSPGVIG 255
Query: 167 LDETQH----EAPYNWEAK-----------------PNKYFFNVESAGALKPENIVIMGV 205
+DE ++ +A Y+ ++ + Y F VES GALKPE I I V
Sbjct: 256 IDENENAYVKDARYDSGSRNVYRYSHLADAVTLARVRDHYIFTVESVGALKPEVIFIEAV 315
Query: 206 TVLKQK 211
VLK+K
Sbjct: 316 KVLKKK 321
>gi|389860853|ref|YP_006363093.1| DNA-directed RNA polymerase subunit D [Thermogladius cellulolyticus
1633]
gi|388525757|gb|AFK50955.1| DNA-directed RNA polymerase subunit D [Thermogladius cellulolyticus
1633]
Length = 282
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 107/252 (42%), Gaps = 46/252 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD----FCSECSVE 56
MA+D+V NS+V DE+IA R+GLIPLTS+ + + +C F +C V+
Sbjct: 39 MAVDYVVFMENSSVFYDEYIAHRLGLIPLTSENALGKYKPPEECREAGEKGVFSEDCFVK 98
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
L + + + DL + D V PV + I IV+L + Q ++
Sbjct: 99 LELSGEGTPGGVKTLYAGDLVTGDPDVRPVYEK--------------IPIVQLLENQRIK 144
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYD------------PDNSMRHTLFPKPDEWPKSEY 164
L AYA+ G G+EH KW+P + +Y P + PK K
Sbjct: 145 LEAYARLGRGREHIKWSPASVASHKYIAKINIDREKCRYPGCKKCVEICPKQVIVEKDGT 204
Query: 165 SELDETQ---------------HEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLK 209
E++E + EA N K ++Y ES G+L P+ I+I L+
Sbjct: 205 VEVEEARLMDCSLCRLCETVCPSEA-INVSYKEDEYILYFESTGSLTPKRILIEATRALE 263
Query: 210 QKLSNLQTQLAH 221
KL+ L+ L
Sbjct: 264 DKLNELKKSLVE 275
>gi|194766065|ref|XP_001965145.1| GF21532 [Drosophila ananassae]
gi|190617755|gb|EDV33279.1| GF21532 [Drosophila ananassae]
Length = 333
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 115/248 (46%), Gaps = 41/248 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GL+PL +D + Y + + + ++EF L
Sbjct: 79 MAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRL--FAYRTEESTETGTEQDTLEFELK 136
Query: 61 VKCV--DDQTRHVTTADLKSTDARV----VPVTSRNRDADMNEYGET------DDILIVK 108
VKC D + + D + +V + + + A + Y ET DDILI +
Sbjct: 137 VKCTRRKDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQI--YTETGVGCIHDDILIAQ 194
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE-- 166
LR G EL LR A KG G++HAK++P A + P + + K +S +S
Sbjct: 195 LRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPQIKLNREVSGKDAYLLQSCFSPGV 254
Query: 167 LDETQHEAPYNWEAK-----------------------PNKYFFNVESAGALKPENIVIM 203
+ ++E Y +A+ + Y F VES GALKPE I +
Sbjct: 255 IGIDENECAYVKDARYDSCSRNVYRYPQINDSVTLARVRDHYIFTVESVGALKPEVIFLE 314
Query: 204 GVTVLKQK 211
V VLK+K
Sbjct: 315 AVKVLKKK 322
>gi|294495898|ref|YP_003542391.1| DNA-directed RNA polymerase, subunit D [Methanohalophilus mahii DSM
5219]
gi|292666897|gb|ADE36746.1| DNA-directed RNA polymerase, subunit D [Methanohalophilus mahii DSM
5219]
Length = 266
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 108/243 (44%), Gaps = 38/243 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N++VL DE IA R+ L+PL + + + +C+C + C C+V TL
Sbjct: 39 LAIDEVNIYNNTSVLYDEQIALRLALVPLVT--IFNEFTPHEECSCEEGCPACTVSLTLS 96
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ D+ + V + DL S D ++ + AD N I +VKL+ GQ+L L
Sbjct: 97 VEAPMDEDKTVYSGDLVSADPKI-------KAADSN-------IAVVKLKGGQQLVLEGI 142
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRH--------TLFPKPDEWPKSEYSELDE--- 169
AK G+G +HAKW ++ P + + P+ E +E+ +
Sbjct: 143 AKMGYGHDHAKWQAGVACGYKNVPVIEIEGCDLCEKCVSACPRDILTLGKESAEVVDDRL 202
Query: 170 ------TQHEAPYNWEA-----KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
Q A + +A + F +ES G+ E ++I V ++ K S L
Sbjct: 203 LNCSLCKQCVAACDIDAISVSENNTSFIFTLESDGSYSAEELIINAVNTIRTKASTLDNI 262
Query: 219 LAH 221
L
Sbjct: 263 LGE 265
>gi|385805508|ref|YP_005841906.1| RNA polymerase, insert [Fervidicoccus fontis Kam940]
gi|383795371|gb|AFH42454.1| RNA polymerase, insert [Fervidicoccus fontis Kam940]
Length = 281
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 14/136 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA+D V + N++VL DE +A R+G+IPL SD +++ +C C C L+
Sbjct: 39 MAVDNVLILENNSVLHDEVLAHRLGMIPLYSDRALEKYRAPEECAECTNCENCFDILHLE 98
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ D+ + V T +LKS D + PV DI IV L KGQ++ L A
Sbjct: 99 VENKDEDKKVVYTGELKSEDPDIYPVFK--------------DIPIVVLGKGQKIVLEAE 144
Query: 121 AKKGFGKEHAKWNPTA 136
A+ G GKEH KW+P +
Sbjct: 145 ARLGRGKEHIKWSPVS 160
>gi|195114368|ref|XP_002001739.1| GI17014 [Drosophila mojavensis]
gi|193912314|gb|EDW11181.1| GI17014 [Drosophila mojavensis]
Length = 333
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 118/248 (47%), Gaps = 41/248 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GL+PL +D + Y D + + ++E+ L
Sbjct: 79 MAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRL--FAYRTDESTDQGTEQDTLEYELK 136
Query: 61 VKCV--DDQTRHVTTADLKSTDARV----VPVTSRNRDADMNEYGET------DDILIVK 108
VKC D ++ + D + +V + + + A + Y E+ +DILI +
Sbjct: 137 VKCTRRKDASKDQSNFDDIYRNHKVYSGHLKWLPKGKQAQI--YSESSVGCIHEDILIAQ 194
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE-- 166
LR G EL LR A KG GK+HAK++P A + P ++ + K +S +S
Sbjct: 195 LRPGHELDLRLIAVKGIGKDHAKFSPVATAYYRLLPQINLTREVRGKDAYLLQSCFSPGV 254
Query: 167 LDETQHEAPYNWEAK-----------------------PNKYFFNVESAGALKPENIVIM 203
+ ++E Y +A+ + Y F+VES GALKPE I +
Sbjct: 255 IGIDENECAYVKDARYDSCSRNVFRYPHLADAVTMGRVRDHYIFSVESVGALKPEVIFLE 314
Query: 204 GVTVLKQK 211
V VLK+K
Sbjct: 315 AVRVLKKK 322
>gi|288560165|ref|YP_003423651.1| DNA-directed RNA polymerase subunit D RpoD [Methanobrevibacter
ruminantium M1]
gi|288542875|gb|ADC46759.1| DNA-directed RNA polymerase subunit D RpoD [Methanobrevibacter
ruminantium M1]
Length = 282
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 114/256 (44%), Gaps = 57/256 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRILYSRDCTC--------VD--- 48
+AI+ V + N + + DE +A R+GL PL SD E ++ ++ DC C VD
Sbjct: 39 LAIEDVFIVKNDSAMFDEVLAHRLGLTPLVSDLESIEGLVMREDCDCNHDENGNYVDKGE 98
Query: 49 FCSECSVEFTLDVKCVDDQTRHVTTADLKST-DARVVPVTSRNRDADMNEYGETDDILIV 107
+C CSV F+L+ + + V + DLKS D+R+ PV D I ++
Sbjct: 99 YCPRCSVSFSLN----ETGPKVVYSRDLKSCGDSRIKPVY--------------DTIPLL 140
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD---NSMRHTLFPKPDEWPKS-- 162
KL++ Q++ L A AK G GKEHAKW PT ++ P+ N ++ D P++
Sbjct: 141 KLKEDQDVELEAVAKLGIGKEHAKWVPTTVCAYKQYPEITFNEGEDVVYQVADACPRNVL 200
Query: 163 --------------EYSELDETQHEAP-------YNWEAKPNKYFFNVESAGALKPENIV 201
E L +T N + N + F +E+ G++ P+ ++
Sbjct: 201 DANRDDGVIEVIDIENCSLCKTCVRTAKAAGSKFINVGYRENDFIFKIETDGSMPPKEVL 260
Query: 202 IMGVTVLKQKLSNLQT 217
+ VL K T
Sbjct: 261 LKACDVLDAKTDEFIT 276
>gi|15219773|ref|NP_176261.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
gi|14423464|gb|AAK62414.1|AF386969_1 RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|514324|gb|AAB00529.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|2462755|gb|AAB71974.1| RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|24899667|gb|AAN65048.1| RNA polymerase subunit (isoform B) [Arabidopsis thaliana]
gi|332195585|gb|AEE33706.1| RNA polymerase I subunit 43 [Arabidopsis thaliana]
gi|1586550|prf||2204246B RNA polymerase
Length = 385
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 127/298 (42%), Gaps = 52/298 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE +A R+GLIP+ +D + L D + ++ F L
Sbjct: 119 MAIEKVYVANNTSVIQDEVLAHRLGLIPIAADPRLFEYLSENDQPN----EKNTIVFKLH 174
Query: 61 VKCV-DDQTRHVTTADLK-----------STDARVVP--VTSRNRDAD-MNEYGET---- 101
VKC+ D R V T++LK S + P TS N D E+ E
Sbjct: 175 VKCLKGDPRRKVLTSELKWLPNGSELIKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRP 234
Query: 102 --DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW 159
DILI KL GQE+ L A+A KG GK HAKW+P A + P+ +
Sbjct: 235 TLKDILIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLKEF------- 287
Query: 160 PKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
E +E P K F++E G + TV + + +L +
Sbjct: 288 ---EGKHAEELVKVCP--------KKVFDIEDMGQGRKR------ATVARPRDCSLCREC 330
Query: 220 AHDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 277
D V + E + N + F +ES G+ PE + V +L+ K + ++L+
Sbjct: 331 IRDGVEW---EDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKCERVISELS 385
>gi|383319963|ref|YP_005380804.1| DNA-directed RNA polymerase subunit D [Methanocella conradii HZ254]
gi|379321333|gb|AFD00286.1| DNA-directed RNA polymerase, subunit D [Methanocella conradii
HZ254]
Length = 262
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 19/144 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID+V + N++V+ DE +A R+GLIPL ++ + ++ DC C+ C V FTL
Sbjct: 39 MAIDYVDIYDNTSVMFDEMLAHRLGLIPLKTNLNMYKLKEECDCKGAG-CALCQVTFTLS 97
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ V + DLKS+D VP AD D+I I++L++GQ+L L A
Sbjct: 98 A----EGPCMVHSRDLKSSDPETVP-------AD-------DNIPIIELKEGQKLVLTAV 139
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDP 144
A+ G GKEHAK+ P ++Y P
Sbjct: 140 ARLGHGKEHAKFQPVCPPGYKYVP 163
>gi|167045221|gb|ABZ09881.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG8O8]
Length = 201
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 96/220 (43%), Gaps = 62/220 (28%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDV 61
AID V + NS+VL+DE I R+GLIPL +D SR S+ + TLD
Sbjct: 41 AIDTVDMIENSSVLADEGITHRLGLIPLKTD-------LSRSDE-----SDSRIMLTLDS 88
Query: 62 KCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYA 121
+ R VT+A+L S D V P +D I I+ L GQ+L+ AYA
Sbjct: 89 GDDTETGRMVTSAELLSDDKVVKP--------------SSDQIPIIHLTPGQKLKFEAYA 134
Query: 122 KKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAK 181
+ G G EHAKWN S + L +T+ E
Sbjct: 135 RLGRGTEHAKWNS---------------------------SNIAVLLDTKKE-------- 159
Query: 182 PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
+++ VE+ GALKP I+I G+ L ++L + L +
Sbjct: 160 -DEHILTVETTGALKPGEIIIGGINELTKRLEEFKEALTN 198
>gi|194856389|ref|XP_001968740.1| GG25034 [Drosophila erecta]
gi|190660607|gb|EDV57799.1| GG25034 [Drosophila erecta]
Length = 329
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 117/249 (46%), Gaps = 43/249 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTL 59
MAI+ V + N++++ DE +A R+GL+PL +D R+ R + +E ++EF L
Sbjct: 75 MAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADP---RLFAYRTEESTEAGTEQDTLEFEL 131
Query: 60 DVKCVD--DQTRHVTTADLKSTDARV----VPVTSRNRDADMNEYGET------DDILIV 107
VKC D + + D + +V + + + A + Y E+ DDILI
Sbjct: 132 KVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQI--YSESAVNCIHDDILIA 189
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE- 166
+LR G EL LR A KG G++HAK++P A + P + + K +S +S
Sbjct: 190 QLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPQIKLNREVSGKDAYLLQSCFSPG 249
Query: 167 -LDETQHEAPYNWEAK-----------------------PNKYFFNVESAGALKPENIVI 202
+ ++E Y +A+ + Y F+VES GALKP+ I +
Sbjct: 250 VIGIDENETAYVKDARYDTCSRNVYRYPQLNDAVTLSRIRDHYIFSVESVGALKPDVIFL 309
Query: 203 MGVTVLKQK 211
V VLK+K
Sbjct: 310 EAVKVLKRK 318
>gi|429962561|gb|ELA42105.1| hypothetical protein VICG_00746 [Vittaforma corneae ATCC 50505]
Length = 233
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 108/225 (48%), Gaps = 43/225 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ NSTVL DE +A+R+GL+P+ + ++ ++C C FC +CS++F L
Sbjct: 38 IAIDVVEIKENSTVLPDEMVANRLGLVPI---KYAGSLIPKQECKCDGFCDQCSIKFILK 94
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ D V DL+ TD V ++ LI++L GQ+L +
Sbjct: 95 KRNDTDSVISVNGQDLQ-TDVPGVHCSAA---------------LILRLAPGQKLDMICI 138
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT-LFPKPD---EWP------KSEYSELDET 170
A G + H K+ P V F YD N R T L+ + D EWP + E+ E+++
Sbjct: 139 ATIGTPQTHVKYCPVTVVGFSYDVRNKTRETKLWAEDDAKKEWPGINQSDEIEWGEIEDV 198
Query: 171 QHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
+ N E VE G KP+ +++ + + K K+ +
Sbjct: 199 E----MNLEV--------VEGMG--KPKEVLLKALEIYKSKMEKI 229
>gi|154340820|ref|XP_001566363.1| DNA-directed RNA polymerase I-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063686|emb|CAM39871.1| DNA-directed RNA polymerase I-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 337
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 133/292 (45%), Gaps = 40/292 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTC-VDFCSECSVEFTL 59
+AI++V + N++VL DE IA R+GL+PL S++ R+ + +DC C C +C + +L
Sbjct: 45 LAIEYVTIRQNTSVLPDEMIAHRLGLVPLFSEK-AKRLNFPQDCGCGGSGCPDCQITGSL 103
Query: 60 DVKCVDDQ-TRHVTTAD-LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
V+C +Q ++ V D L+ A V PV++ E+G I +V L + Q L L
Sbjct: 104 KVQCPPNQHSKQVFIGDSLQIDSAEVYPVSA-------EEHG----IWLVTLGRSQVLDL 152
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYN 177
+K K HAK+ P A V Y + + P+ + L +T
Sbjct: 153 NVLIRKNIAKTHAKFMPVATVAMRYAAE------ILLNPN-----GFQALGKTNAR---E 198
Query: 178 WEAK-PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT---QLAHDRVFYVINEAPY 233
W A+ P F VE G ++ ++ G + ++ ++ + +L VF ++
Sbjct: 199 WVARCPRNVFRFVERTGQVEVQD---EGACIFCRECTSQEPPFDKLPEPLVFVRQRKSKM 255
Query: 234 NWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDAL 285
+ + F VES G L IV V VL++KL + L + D +
Sbjct: 256 GY----FDFTFVVESTGVLPVLQIVYDAVAVLRKKLQRVSEGLMKNPNADGV 303
>gi|270010836|gb|EFA07284.1| hypothetical protein TcasGA2_TC014519 [Tribolium castaneum]
Length = 335
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 116/259 (44%), Gaps = 43/259 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GLIPL +D R+ + + + ++EF L
Sbjct: 81 MAIEKVHILNNTSIIQDEVLAHRLGLIPLKADP---RLFEMKTDPTAEGTEQDTLEFALK 137
Query: 61 VKCVD--DQTRHVTTAD-------LKSTDARVVPV-TSRNRDADMNEYGETDDILIVKLR 110
+KC + D ++ A+ + S + VP+ + R +D+ DILI K+R
Sbjct: 138 IKCTNNKDSSKDSLRAEDMYKNNNVYSKHIKWVPIGKQKERFSDVGPIHP--DILIAKMR 195
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE-LDE 169
G EL L+ A K G++HAK++P A + PD + + + E + +S +
Sbjct: 196 PGHELDLKLLAVKSNGRDHAKFSPVATAFYRLLPDIKLLREVEGEAAERLQKCFSPGVIS 255
Query: 170 TQHEAPYNWEAKPN---------------------------KYFFNVESAGALKPENIVI 202
+HE + N + F VES GAL P+ I +
Sbjct: 256 IRHEKGRKYAVVANARYDTGSRNVFRYEDLKDAVAMTKIQDHFIFTVESVGALPPDVIFM 315
Query: 203 MGVTVLKQKLSNLQTQLAH 221
V +LK K L +L+H
Sbjct: 316 EAVKILKDKCLALLDELSH 334
>gi|124486064|ref|YP_001030680.1| DNA-directed RNA polymerase subunit D [Methanocorpusculum labreanum
Z]
gi|124363605|gb|ABN07413.1| DNA-directed RNA polymerase, subunit D [Methanocorpusculum
labreanum Z]
Length = 275
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 21/152 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV-DFCSECSVEFTL 59
+AI+ +++ N++VL DE +A R+GLIP+ +D + + + +C+C + C C+V FTL
Sbjct: 39 LAIEDIRIYDNTSVLFDEMLAHRLGLIPIKTD--LSQYVPRSECSCGGEGCPHCTVMFTL 96
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V + + VT+ DL S D VVPV ++I IVKL + Q++ L A
Sbjct: 97 SV----EGPKMVTSGDLISMDENVVPVH--------------NNIPIVKLWENQKVVLEA 138
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT 151
A+ +GKEHAKW PT + P +++ T
Sbjct: 139 VAEVNYGKEHAKWQPTLACGYSEYPVITIKDT 170
>gi|432329920|ref|YP_007248063.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanoregula formicicum SMSP]
gi|432136629|gb|AGB01556.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanoregula formicicum SMSP]
Length = 276
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 110/257 (42%), Gaps = 62/257 (24%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD--CTCVDF-CSECSVEF 57
+AI+ V++ N++ L DE +A R+GLIPL +D V YS C+C C C+ +
Sbjct: 39 LAIEDVRIYDNTSALFDEMLAHRLGLIPLKTDLSV----YSTQDTCSCGGAGCPGCTATY 94
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
TL V + R VT++DL D PV D+I IVKL KGQ+L +
Sbjct: 95 TLSV----EGPRMVTSSDLIPQDPGAAPVY--------------DNIPIVKLTKGQKLVI 136
Query: 118 RAYAKKGFGKEHAKWNPT-------------------AGVCFEYDPDNSMRHTLFPKP-- 156
A A G+ HAKW T G+C E P R L K
Sbjct: 137 EARAILNTGRAHAKWQSTLVCGYKNHPVITVSDVCDACGMCVEECP----RDILVAKGKK 192
Query: 157 -----DEWPKSEYSELDE-------TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMG 204
+ P+ L E E A+P+++ F VES G+L + I+
Sbjct: 193 VQVAEGKLPECSMCRLCERACLASGIGEEPAIKISAEPDRFIFVVESDGSLPAKEIMNRA 252
Query: 205 VTVLKQKLSNLQTQLAH 221
++ ++++ L+ QL
Sbjct: 253 LSFIREQADELEQQLGE 269
>gi|91772121|ref|YP_564813.1| DNA-directed RNA polymerase subunit D [Methanococcoides burtonii
DSM 6242]
gi|91711136|gb|ABE51063.1| DNA-directed RNA polymerase subunit D [Methanococcoides burtonii
DSM 6242]
Length = 267
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 105/243 (43%), Gaps = 39/243 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTL 59
+AID V + N++VL DE +A R+GLIPLT+ D + CTC C C+V TL
Sbjct: 39 LAIDDVNIYNNTSVLYDEQLALRLGLIPLTTS--FDDFVPQDKCTCDGAGCPACTVSLTL 96
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V+ + V + D+ S+D V P AD N I I+ LR GQ++ L A
Sbjct: 97 SVETDESGQTIVHSGDIVSSDPNVQP-------ADKN-------IPIIDLRVGQKVVLEA 142
Query: 120 YAKKGFGKEHAKWNP------------------TAGVCFEYDPDNSMR---HTLFPKPDE 158
A G+G +HAKW G+C P N ++ + ++
Sbjct: 143 IAHMGYGNKHAKWQAGVACGYKIMPIVTFEGCDGCGICINSCPRNIIQLIDGSAMVADED 202
Query: 159 WPKSEYSELDETQHEA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT 217
K L + + A + F +ES G+ + +++ V +K K S +Q
Sbjct: 203 LLKCSLCRLCQDSCDINAITVSADEKSFIFTMESDGSYTAQQLILNAVNTIKGKASEMQN 262
Query: 218 QLA 220
L+
Sbjct: 263 ILS 265
>gi|296243119|ref|YP_003650606.1| DNA-directed RNA polymerase subunit D [Thermosphaera aggregans DSM
11486]
gi|296095703|gb|ADG91654.1| DNA-directed RNA polymerase, subunit D [Thermosphaera aggregans DSM
11486]
Length = 277
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 125/280 (44%), Gaps = 50/280 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD----FCSECSVE 56
MAID+V NS+V DE++A R+GLIPLTSD+ + + +C F +C V
Sbjct: 39 MAIDYVAFMENSSVFYDEYLAHRLGLIPLTSDQALWKYKSPEECREAGEKGLFSEDCFVR 98
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
+L+ + D+ + + +L S+D V P +G+ I IVKL K Q+++
Sbjct: 99 LSLEGEG-GDEAVTLYSDNLVSSDPDVKP-----------SFGK---IPIVKLIKPQKVK 143
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPY 176
L AYA+ G GKEH KW+P + +Y P N + + + +E K
Sbjct: 144 LEAYARLGRGKEHIKWSPVSVAAHKYVP-NILVNQRLCRGEECLKC-------------- 188
Query: 177 NWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNWE 236
EA P + F A + + + +L + L L V +E
Sbjct: 189 -VEACPKEVF-------AFQSGEVKVRSDKLLDCTMCKLCENLCPSGAVKVSHEE----- 235
Query: 237 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+++ +E GAL N+++ V +L++KL + L
Sbjct: 236 ---DEFILTLELTGALSARNVLLESVRILEKKLDDFVETL 272
>gi|281209634|gb|EFA83802.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 358
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 129/288 (44%), Gaps = 49/288 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N+++L DE +A R+GLIP+ VD +++ ++ +E ++ FTL
Sbjct: 112 MAIERVFMINNTSILQDEVLAHRLGLIPIK----VDPKIFNYKEPGKEYTAEDTLIFTLK 167
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNR----DADMNEYGETDDILIVKLRKGQELR 116
V+C D + S VP +N +AD + DDI IVKLR GQ L
Sbjct: 168 VRCYKDANGETINGTVLSKHLTWVPTDDQNEMFPNEAD-HPRPAYDDIPIVKLRPGQALE 226
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPY 176
++ Y +K G+EH KW+P ++ P+ S+ K + + + P
Sbjct: 227 VQCYCEKNIGREHIKWSPVGTAFYKILPEISVSD----------KVTGEKAKKLKQSCPM 276
Query: 177 NWEAKPNKYFFNVESAG---ALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPY 233
N +++E +G A +P M T+ ++ + + + + P+
Sbjct: 277 N--------VYDIEDSGKAFAARP-----MDCTMCRECIRDPEME-------------PF 310
Query: 234 -NWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHEL 280
E + + F++ES G + P+ + + +L K S ++ L ++
Sbjct: 311 VKLERVRDHFIFSIESVGTIAPKTLFQDAIKILIDKCSTVENSLNTQI 358
>gi|288931228|ref|YP_003435288.1| RNA polymerase insert [Ferroglobus placidus DSM 10642]
gi|288893476|gb|ADC65013.1| RNA polymerase insert [Ferroglobus placidus DSM 10642]
Length = 262
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 22/141 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTC-VDFCSECSVEFTL 59
+A+D+V N+++L DE IA RIGLIPL +D ++R + C C + C C V L
Sbjct: 39 LAVDYVDFYLNTSLLYDEIIAHRIGLIPLKTD--LERYNFQDKCVCEGEGCPNCQVSLRL 96
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+V + + V + DL D V PV D+I IV+L +GQ+L L A
Sbjct: 97 NV----EGPKTVYSGDLIPDDPEVKPVY--------------DNIPIVELYEGQQLMLEA 138
Query: 120 YAKKGFGKEHAKWNPTAGVCF 140
A+ G GKEHAK+ P + +C+
Sbjct: 139 VARLGTGKEHAKFQPVS-ICY 158
>gi|125984360|ref|XP_001355944.1| GA17664 [Drosophila pseudoobscura pseudoobscura]
gi|54644262|gb|EAL33003.1| GA17664 [Drosophila pseudoobscura pseudoobscura]
Length = 333
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 117/248 (47%), Gaps = 41/248 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GL+PL +D + Y + + + ++E+ L
Sbjct: 79 MAIEKVYIYNNTSIIQDEVLAHRMGLLPLKADPRL--FAYRTEESGEAGTEQDTLEYELK 136
Query: 61 VKCV--DDQTRHVTTADLKSTDARV----VPVTSRNRDADMNEYGET------DDILIVK 108
VKC D ++ + D + +V + + + A + Y E+ +DILI +
Sbjct: 137 VKCTRRKDASKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQI--YSESMVNCIHEDILIAQ 194
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE-- 166
LR G EL LR A KG GK+HAK++P A + P + ++ K +S +S
Sbjct: 195 LRPGHELDLRLVAVKGLGKDHAKFSPVATAYYRLLPQIKLNREVYGKDAYLLQSCFSPGV 254
Query: 167 LDETQHEAPYNWEAK-----------------------PNKYFFNVESAGALKPENIVIM 203
+ ++E Y +A+ + Y F VES G+LKP+ I +
Sbjct: 255 IGIDENECAYVKDARYDSCSRNVYRYPQLEDSVTLGRVRDHYIFTVESVGSLKPDVIFLE 314
Query: 204 GVTVLKQK 211
V VLK+K
Sbjct: 315 AVKVLKKK 322
>gi|195472829|ref|XP_002088701.1| GE11271 [Drosophila yakuba]
gi|194174802|gb|EDW88413.1| GE11271 [Drosophila yakuba]
Length = 333
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 117/249 (46%), Gaps = 43/249 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTL 59
MAI+ V + N++++ DE +A R+GL+PL +D R+ R + +E ++EF L
Sbjct: 79 MAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADP---RLFAYRTEESTEAGTEQDTLEFEL 135
Query: 60 DVKCVD--DQTRHVTTADLKSTDARV----VPVTSRNRDADMNEYGET------DDILIV 107
VKC D + + D + +V + + + A + Y E+ DDILI
Sbjct: 136 KVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQI--YNESAVNCIHDDILIA 193
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE- 166
+LR G EL LR A KG G++HAK++P A + P + + K +S +S
Sbjct: 194 QLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPLIKLNREVSGKDAYLLQSCFSPG 253
Query: 167 -LDETQHEAPYNWEAK-----------------------PNKYFFNVESAGALKPENIVI 202
+ ++E Y +A+ + Y F+VES GALKP+ I +
Sbjct: 254 VIGIDENETAYVKDARYDTCSRNVYRYPQLNDAVTLARIRDHYIFSVESVGALKPDVIFL 313
Query: 203 MGVTVLKQK 211
V VLK+K
Sbjct: 314 EAVKVLKRK 322
>gi|118431575|ref|NP_148137.2| DNA-directed RNA polymerase subunit D [Aeropyrum pernix K1]
gi|150421654|sp|Q9YB53.2|RPOD_AERPE RecName: Full=DNA-directed RNA polymerase subunit D
gi|116062900|dbj|BAA80745.2| DNA-directed RNA polymerase subunit D [Aeropyrum pernix K1]
Length = 286
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 109/244 (44%), Gaps = 43/244 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSE-CSVEFTL 59
MA+D+ + N+T + DE +A R+GL+ L S+E V++ +C + E C VE +L
Sbjct: 45 MAVDYAYIFDNTTAVYDEMVAHRLGLVVLDSNEAVEKYRRPEECAGKEPSEEDCFVEVSL 104
Query: 60 --DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
+V + R++T DL +D +V PV Y ET I + GQ + +
Sbjct: 105 EAEVDAEGETGRYITAGDLSISDPQVKPV-----------YPETPLIYVA---PGQRIHV 150
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDP----DNSMRH-------TLFPKPDEWPKS---- 162
+A+A+ G GKEH KW+P + Y P D+S + +P+ E KS
Sbjct: 151 QAFARLGRGKEHTKWSPASLSVLRYTPILIYDSSKAGDECLECLSAYPQVVEALKSGGKG 210
Query: 163 --------EYSELD---ETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 211
S L ET + VES GAL+PE IV + + L++K
Sbjct: 211 SLVLEGLRRTSGLRYCAETACRGAVEVRYDSSNLDLEVESTGALRPEKIVELAIRELEEK 270
Query: 212 LSNL 215
+
Sbjct: 271 VKRF 274
>gi|328766566|gb|EGF76620.1| hypothetical protein BATDEDRAFT_21078 [Batrachochytrium
dendrobatidis JAM81]
Length = 342
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 118/261 (45%), Gaps = 49/261 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N+ V+ DE +A R+GLIP+ SD R+ R+ + ++ F L+
Sbjct: 78 MAIENVYIMNNTGVMHDEVLAQRLGLIPINSDP---RLFDFREGSDDPPTDLNTLVFRLN 134
Query: 61 VKCVDDQTRHVTTADLKSTDARV-VPVTSRN-------------RDADMNEYGETDDILI 106
+KC + H + +++ ++ + V S++ +D+ + Y DDILI
Sbjct: 135 IKCT--RNPHASASEINPSNKYIDSDVLSKHLIWEPQGDQVEKFKDSPIRPY--YDDILI 190
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE 166
KLR GQE+ + +KG GKEHAKW+P A + PD + + K E K+ + E
Sbjct: 191 TKLRPGQEIEAELHCQKGIGKEHAKWSPVATASYRLLPDIQILKPITGKDAEKFKNCFPE 250
Query: 167 --LDETQHEAPYNWE-AKPNK-------------------------YFFNVESAGALKPE 198
+ Q + E A P K + F++ES GAL P+
Sbjct: 251 GTVKIVQKNGVGHAEIANPRKDTASREVLRHAEFLDKVRLTRVRDHFIFSIESTGALPPQ 310
Query: 199 NIVIMGVTVLKQKLSNLQTQL 219
+ +L +K N++ L
Sbjct: 311 LLFQEASQILIEKCLNIKQAL 331
>gi|407039476|gb|EKE39676.1| DNA-directed RNA polymerase, alpha subunit, N-terminal domain
containing protein [Entamoeba nuttalli P19]
Length = 283
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 111/257 (43%), Gaps = 55/257 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI V++ ANS+ L DEFIA R+GLIP+ S ++ + D ++ E +
Sbjct: 48 IAIQLVRVYANSSYLCDEFIAHRLGLIPIDSTQIHN--FEDTDDAILELKEENN------ 99
Query: 61 VKCVDDQTRHVTTADLKST-DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+Q VT+ DL S D RV PV RN + D I+I +L Q + +
Sbjct: 100 ----SNQLVVVTSNDLVSIGDKRVAPVNYRN---------DVDPIVITQLGPRQNIHMVC 146
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH----TLFPKP-----DEWPKS--EYSELD 168
Y KKG GK HAKWNPT F+ D + +L P+ ++ P+ +Y E+
Sbjct: 147 YVKKGTGKFHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVG 206
Query: 169 E----------------------TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVT 206
E K +++ F VE G P+ I+ +G+
Sbjct: 207 EKVFIRGEENCIFCNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLE 266
Query: 207 VLKQKLSNLQTQLAHDR 223
+K+K NL+ L +
Sbjct: 267 EMKKKFVNLKKALNESK 283
>gi|389852940|ref|YP_006355174.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. ST04]
gi|388250246|gb|AFK23099.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. ST04]
Length = 259
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 106/248 (42%), Gaps = 62/248 (25%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+ +IPLT+ VDR + D +D ++T+
Sbjct: 40 FAVDEVEFYENDSALFDEIIAHRLAMIPLTTP--VDR--FELDALELD-------DYTVT 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DLKS D V PVT DI IVKL KGQ L AY
Sbjct: 89 LSLEAEGPGIVYSGDLKSDDPDVRPVTP--------------DIPIVKLAKGQRLVFNAY 134
Query: 121 AKKGFGKEHAKWNP----------------------------TAGVCFEYDPDNSMRHTL 152
AK G GK+HAKW P G+ E + + T+
Sbjct: 135 AKLGRGKDHAKWQPGFVYYKYYTKIHISKEIEGWEKLKKLAKKRGLPVEENEKEVIVTTI 194
Query: 153 FPKPDEWPKSEYSELDETQHEAPYNW-EAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 211
KP PK E+ E +E W E P+ Y F VE+ G L E IV + + +L +K
Sbjct: 195 --KPFYIPK-EFEE-----YEGKEIWEEIVPDTYVFTVETNGELPVEEIVSIALKILMRK 246
Query: 212 LSNLQTQL 219
++L
Sbjct: 247 ADRFISEL 254
>gi|289742757|gb|ADD20126.1| RNA polymerase I and III subunit rPA40/rPC40 [Glossina morsitans
morsitans]
Length = 330
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 113/245 (46%), Gaps = 37/245 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GLIPL +D R+ R + +++F L
Sbjct: 78 MAIEKVYIHNNTSIIQDEVLAHRLGLIPLKADP---RLFEYRGDESDQGTEQDTLDFELK 134
Query: 61 VKCVDDQ-TRHVTTAD-------LKSTDARVVPVTSRNRDADMNEYGETDD-ILIVKLRK 111
VKC + + + D + S + +P + + ++ G DD ILI ++R
Sbjct: 135 VKCSRRKDVKESSNFDSIYKNHKIYSGQIKWLPKGKQAQIYSESDVGPIDDDILITQMRP 194
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE----L 167
G EL +R A KG GK+HAK++P A + P+ ++ + K + +S L
Sbjct: 195 GHELDIRLAAVKGIGKDHAKFSPVATAFYRLLPEVKLKKDVVGKDAFLLQKCFSPGVIGL 254
Query: 168 DETQH----EAPYNWEAK-----------------PNKYFFNVESAGALKPENIVIMGVT 206
DE A Y+ ++ + Y F VES GALKP+ I I V
Sbjct: 255 DENDRAYVKNARYDTCSRNVYRYPQLADVVEMARIRDHYIFTVESLGALKPDVIFIEAVK 314
Query: 207 VLKQK 211
+LK K
Sbjct: 315 LLKSK 319
>gi|167386476|ref|XP_001737769.1| DNA-directed RNA polymerase subunit D [Entamoeba dispar SAW760]
gi|165899221|gb|EDR25860.1| DNA-directed RNA polymerase subunit D, putative [Entamoeba dispar
SAW760]
Length = 283
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/257 (28%), Positives = 111/257 (43%), Gaps = 55/257 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI V++ ANS+ L DEFIA R+GLIP+ S ++ + D ++ E +
Sbjct: 48 IAIQLVRVYANSSYLCDEFIAHRLGLIPIDSTQIHN--FEDTDDAILELKKENN------ 99
Query: 61 VKCVDDQTRHVTTADLKST-DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+Q VT+ DL S D RV PV RN + D I+I +L Q + +
Sbjct: 100 ----SNQLVVVTSNDLVSIGDKRVAPVNYRN---------DVDPIVITQLGPRQNIHMVC 146
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH----TLFPKP-----DEWPKS--EYSELD 168
Y KKG GK HAKWNPT F+ D + +L P+ ++ P+ +Y E+
Sbjct: 147 YVKKGTGKFHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVG 206
Query: 169 E----------------------TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVT 206
E K +++ F VE G P+ I+ +G+
Sbjct: 207 EKVFIRGDENCIFCNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLE 266
Query: 207 VLKQKLSNLQTQLAHDR 223
+K+K NL+ L +
Sbjct: 267 EMKKKFVNLKKALNESK 283
>gi|326428554|gb|EGD74124.1| RNA polymerase subunit I [Salpingoeca sp. ATCC 50818]
Length = 328
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 105/252 (41%), Gaps = 36/252 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ + NS+VL DE +A RIGLIPL D R L + D + + F LD
Sbjct: 73 MAIEQAYIYHNSSVLPDEMLAHRIGLIPLAVDARRFRTLEEDNNEMNDLNT---LVFDLD 129
Query: 61 VKCVD---------DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRK 111
V+C D+ + + S+D + P ++ +DI IV+LR
Sbjct: 130 VECKHREGAKAGETDKNKKYINHMVMSSDIKWQPKGNQKDRFKTAICPVHEDIPIVELRP 189
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH----------------TLFPK 155
GQ + + + KG GK HAKW+P A + P ++ +
Sbjct: 190 GQRVSMELHCSKGVGKLHAKWSPVATASYRNAPHIVLKQRVTGDLAYRLQQCFTDGVIEV 249
Query: 156 PDEWPKSEYSELDETQHEAPYNWEAKP--------NKYFFNVESAGALKPENIVIMGVTV 207
D + S D E + + P N + F VES GAL+P+ +V V V
Sbjct: 250 RDGEAEVVNSRADMMSREHLRHDDLAPLVHTTRRRNHFIFQVESTGALEPDVLVCEAVGV 309
Query: 208 LKQKLSNLQTQL 219
LK K S L QL
Sbjct: 310 LKDKCSRLLDQL 321
Score = 38.1 bits (87), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 238 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ N + F VES GAL+P+ +V V VLK K S L QL
Sbjct: 283 RRNHFIFQVESTGALEPDVLVCEAVGVLKDKCSRLLDQL 321
>gi|119872211|ref|YP_930218.1| RNA polymerase, insert [Pyrobaculum islandicum DSM 4184]
gi|166229321|sp|A1RSE3.1|RPOD_PYRIL RecName: Full=DNA-directed RNA polymerase subunit D
gi|119673619|gb|ABL87875.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum islandicum DSM
4184]
Length = 262
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/236 (33%), Positives = 106/236 (44%), Gaps = 38/236 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC-TCVDFCSECSVEFTL 59
MAID+V + +N++V+ DE +A R+GL+PLT+ + + DC T + SEC+V L
Sbjct: 40 MAIDYVVIVSNTSVMYDEMLAHRLGLVPLTTP--LQALPPIEDCETGLVDPSECTVRLML 97
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+ D+ V + DL S VVPV DI IVKL KGQ + L A
Sbjct: 98 QINAESDKI--VYSGDLVSERPDVVPVYK--------------DIPIVKLVKGQSIILEA 141
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYN-- 177
YAK G KEHAKW A + Y P + L K E K EL E +N
Sbjct: 142 YAKLGRAKEHAKWQ-AALASYYYYPRIKV---LDEKCKEECKDICKELT-NPFECTFNKA 196
Query: 178 WEAKP------------NKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
W + KY F VES G E + +LK+K S+ T L
Sbjct: 197 WTCRDICGDRLIVEWDRYKYVFWVESFGNYDVETALREAFRILKKKFSDFITTLTQ 252
>gi|328866801|gb|EGG15184.1| RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 355
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 113/251 (45%), Gaps = 38/251 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N+++L DE +A R+GLIP+ VD ++ ++ +E ++ F L+
Sbjct: 107 MAIEKVFIINNTSILQDEVLAHRLGLIPIK----VDPRKFNFKQASKEYTAEDTLIFKLN 162
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET------DDILIVKLRKGQE 114
V+C D+ + S + P + ++++ E E DDI IVKLR GQ
Sbjct: 163 VRCYKDENGETVNGTVTSGQLKWEP--TEDQESMFGENPEDFPRPVHDDIPIVKLRPGQT 220
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE------WPKSEYSELD 168
+ ++ Y +K G+EH KW+P + PD ++ + F K PK+ + D
Sbjct: 221 VDIQLYCEKNIGREHIKWSPVGTASYRLMPDITVDSSKFDKKQAEKLKATCPKNVFDIED 280
Query: 169 ETQ--------------------HEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVL 208
Q E E + + +++ES GAL P+ + + +L
Sbjct: 281 SYQVIAARPLDCTMCRECIRDPEFENVVKLERIRDHFIYSIESLGALPPKVLFQEAIKIL 340
Query: 209 KQKLSNLQTQL 219
+K +++ L
Sbjct: 341 IEKCDDIENSL 351
>gi|198427484|ref|XP_002120101.1| PREDICTED: similar to RNA polymerase 1-1 [Ciona intestinalis]
Length = 345
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 14/153 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N+TV+ DE +A R+GLIPLT+D ++ R D E ++EF L+
Sbjct: 84 MAIEKVYIYNNTTVIQDEVLAHRLGLIPLTADA---KLFEYRQGDDADGTPEDTLEFELN 140
Query: 61 VKCVDDQTRHVTTADLK---------STDARVVPVTSRNRDADMNEYGETDDILIVKLRK 111
+KC + + T DL S D + +P+ N+ + DDIL+ KLR
Sbjct: 141 IKCTKNLSAPKDTTDLDVLYKHHKVYSKDIKWIPLG--NQKDLLTVKPVYDDILVAKLRP 198
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
G L ++ +A KG G++HAK++P A + P
Sbjct: 199 GHILDVKLHAVKGVGQDHAKFSPVATASYRLLP 231
>gi|20129237|ref|NP_608885.1| CG3756 [Drosophila melanogaster]
gi|7296912|gb|AAF52185.1| CG3756 [Drosophila melanogaster]
gi|21429120|gb|AAM50279.1| LP03982p [Drosophila melanogaster]
Length = 333
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTL 59
MAI+ V + N++++ DE +A R+GL+PL +D R+ R + +E ++EF L
Sbjct: 79 MAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADP---RLFAYRTEESTEAGTEQDTLEFEL 135
Query: 60 DVKCVD--DQTRHVTTADLKSTDARV----VPVTSRNRDADMNEYGET------DDILIV 107
VKC D + + D + +V + + + A + Y E+ DDILI
Sbjct: 136 KVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQI--YSESAVNCIHDDILIA 193
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE- 166
+LR G EL LR A KG G++HAK++P A + P + + K ++ +S
Sbjct: 194 QLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPMIKLNREVTGKDAYLLQNCFSPG 253
Query: 167 -LDETQHEAPYNWEAK-----------------------PNKYFFNVESAGALKPENIVI 202
+ ++E Y +A+ + Y F+VES GALKP+ I +
Sbjct: 254 VIGIDENETAYVKDARYDTCSRNVYRYPQLNDAVTLARIRDHYIFSVESVGALKPDVIFL 313
Query: 203 MGVTVLKQKLSNL 215
V VLK+K L
Sbjct: 314 EAVKVLKRKCRAL 326
>gi|195576648|ref|XP_002078187.1| GD23312 [Drosophila simulans]
gi|194190196|gb|EDX03772.1| GD23312 [Drosophila simulans]
Length = 333
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTL 59
MAI+ V + N++++ DE +A R+GL+PL +D R+ R + +E ++EF L
Sbjct: 79 MAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADP---RLFAYRTEESTEAGTEQDTLEFEL 135
Query: 60 DVKCVD--DQTRHVTTADLKSTDARV----VPVTSRNRDADMNEYGET------DDILIV 107
VKC D + + D + +V + + + A + Y E+ DDILI
Sbjct: 136 KVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQI--YSESAVNCIHDDILIA 193
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE- 166
+LR G EL LR A KG G++HAK++P A + P + + K ++ +S
Sbjct: 194 QLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPLIKLNREVTGKDAYLLQNCFSPG 253
Query: 167 -LDETQHEAPYNWEAK-----------------------PNKYFFNVESAGALKPENIVI 202
+ ++E Y +A+ + Y F+VES GALKP+ I +
Sbjct: 254 VIGIDENETAYVKDARYDTCSRNVYRYPQLNDAVTLARIRDHYIFSVESVGALKPDVIFL 313
Query: 203 MGVTVLKQKLSNL 215
V VLK+K L
Sbjct: 314 EAVKVLKRKCRAL 326
>gi|18978019|ref|NP_579376.1| DNA-directed RNA polymerase subunit D [Pyrococcus furiosus DSM
3638]
gi|397652704|ref|YP_006493285.1| DNA-directed RNA polymerase subunit D [Pyrococcus furiosus COM1]
gi|23822102|sp|Q8U0E4.1|RPOD_PYRFU RecName: Full=DNA-directed RNA polymerase subunit D
gi|18893802|gb|AAL81771.1| DNA-directed RNA polymerase subunit d [Pyrococcus furiosus DSM
3638]
gi|393190295|gb|AFN04993.1| DNA-directed RNA polymerase subunit D [Pyrococcus furiosus COM1]
Length = 261
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 103/245 (42%), Gaps = 56/245 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+ +IPLT+ VDR + D +D ++T+
Sbjct: 42 FAVDEVEFYENDSALFDEIIAHRLAMIPLTTP--VDR--FELDALELD-------DYTVT 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DLKS D V PV +I IVKL +GQ L AY
Sbjct: 91 LSLEAEGPGIVYSGDLKSDDPDVKPVNP--------------NIPIVKLAEGQRLVFNAY 136
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWP-------------------- 160
AK G GK+HAKW P F Y ++ H P EW
Sbjct: 137 AKLGRGKDHAKWQP----GFVYYKYYTIVHISKSIP-EWKELKKLAKKRGLPVEETEEEV 191
Query: 161 -----KSEYSELDETQHEAPYNW-EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSN 214
K Y D ++E W E PN Y F VE+ G L E IV + + +L +K
Sbjct: 192 LVTTIKPFYIPKDFEEYEGKEIWEEIVPNTYIFTVETNGELPVEEIVSIALKILMRKADR 251
Query: 215 LQTQL 219
++L
Sbjct: 252 FISEL 256
>gi|21592304|gb|AAM64255.1| RNA polymerase subunit [Arabidopsis thaliana]
Length = 375
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 123/289 (42%), Gaps = 53/289 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE +A R+GLIP+ +D + L D + ++ F L
Sbjct: 112 MAIEKVFIAYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHD----QANEKNTIVFKLH 167
Query: 61 VKCVDDQTR-HVTTADLK-STDARVVPVTSRNRDADMNEYGETD---------------- 102
VKC ++ R V T+DLK + + S N+ + + Y
Sbjct: 168 VKCPKNRPRLKVLTSDLKWLPNGSELLRESENKTSKLKTYTSFSCSQDSLPEFANNPITP 227
Query: 103 ---DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW 159
DILI KL GQE+ L A+A KG GK HAKW+P + P+ +R +
Sbjct: 228 CDLDILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEV------- 280
Query: 160 PKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+ E +E + P N F++E G K TV + + + L
Sbjct: 281 -EDELAE--RLVNVCPQN--------VFDIEDMGKGKKR------ATVAQPR----KCTL 319
Query: 220 AHDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 268
+ V + + N + FN+ES G+L PE + V +L+ K
Sbjct: 320 CKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAK 368
>gi|301095581|ref|XP_002896890.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
gi|262108537|gb|EEY66589.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
Length = 339
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 123/282 (43%), Gaps = 55/282 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + NS+++ DE +A R+GLIPL D D + E ++ F LD
Sbjct: 70 MAIEHVYIWNNSSIIQDEVLAHRLGLIPLNVDP--REFQAFPDNEEAEATDENTIVFKLD 127
Query: 61 VKCV------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET----DDILIVKLR 110
V C D T+ + ++ + S D VP ++ +G +DIL+ KLR
Sbjct: 128 VTCKFDPEHPKDPTKAIHSS-VYSRDLEWVPQGNQE-----ERFGSIRPVHEDILMAKLR 181
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDET 170
GQ + L A+ +KG GK+HAK++P A + L PK + K E ++
Sbjct: 182 PGQSIALEAHCRKGVGKDHAKFSPVATASYR----------LMPKVELMEKVEGTDAKRL 231
Query: 171 QHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINE 230
E F++E G + P +V + Q A I E
Sbjct: 232 VEECQIG--------LFDIEDIGGV-PTAVV--------------KDQRACTMCRNCIRE 268
Query: 231 APYNWEAKPNK----YFFNVESAGALKPENIVIMGVTVLKQK 268
+N + + + + F+VES G +KPE +++ + VL +K
Sbjct: 269 PSWNEKIRLGRQSDHFIFSVESVGMIKPEELLLEALNVLAEK 310
>gi|449709854|gb|EMD49037.1| DNA-directed RNA polymerase II subunit, putative [Entamoeba
histolytica KU27]
Length = 283
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 111/257 (43%), Gaps = 55/257 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI V++ ANS+ L DEFIA R+GLIP+ S ++ + D ++ E +
Sbjct: 48 IAIQLVRVYANSSYLCDEFIAHRLGLIPIDSTQIHN--FEDTDDAILELKEENN------ 99
Query: 61 VKCVDDQTRHVTTADLKST-DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+Q VT+ DL S D RV PV +N + D I+I +L Q + +
Sbjct: 100 ----SNQLVVVTSNDLVSIGDKRVAPVNYKN---------DVDPIVITQLGPRQNIHMVC 146
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH----TLFPKP-----DEWPKS--EYSELD 168
Y KKG GK HAKWNPT F+ D + +L P+ ++ P+ +Y E+
Sbjct: 147 YVKKGTGKFHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKVFDYQEVG 206
Query: 169 E----------------------TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVT 206
E K +++ F VE G P+ I+ +G+
Sbjct: 207 EKVFIRGEENCIFCNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLE 266
Query: 207 VLKQKLSNLQTQLAHDR 223
+K+K NL+ L +
Sbjct: 267 EMKKKFVNLKKALNESK 283
>gi|67471071|ref|XP_651491.1| DNA-directed RNA polymerase II subunit [Entamoeba histolytica
HM-1:IMSS]
gi|56468232|gb|EAL46103.1| DNA-directed RNA polymerase II subunit, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 283
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 111/257 (43%), Gaps = 55/257 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI V++ ANS+ L DEFIA R+GLIP+ S ++ + D ++ E +
Sbjct: 48 IAIQLVRVYANSSYLCDEFIAHRLGLIPIDSTQIHN--FEDTDDAILELKEENN------ 99
Query: 61 VKCVDDQTRHVTTADLKST-DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+Q VT+ DL S D RV PV +N + D I+I +L Q + +
Sbjct: 100 ----SNQLVVVTSNDLVSIGDKRVAPVNYKN---------DVDPIVITQLGPRQNIHMVC 146
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH----TLFPKP-----DEWPKS--EYSELD 168
Y KKG GK HAKWNPT F+ D + +L P+ ++ P+ +Y E+
Sbjct: 147 YVKKGTGKFHAKWNPTCQCVFQTLADIRINDEKMISLTPEQKRTFCEQCPQKLFDYQEVG 206
Query: 169 E----------------------TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVT 206
E K +++ F VE G P+ I+ +G+
Sbjct: 207 EKVFIRGEENCIFCNECTVYARDIGQRNLVTVTPKTDQFVFKVEGTGVYPPKQIIELGLE 266
Query: 207 VLKQKLSNLQTQLAHDR 223
+K+K NL+ L +
Sbjct: 267 EMKKKFVNLKKALNESK 283
>gi|118576727|ref|YP_876470.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Cenarchaeum symbiosum A]
gi|118195248|gb|ABK78166.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Cenarchaeum symbiosum A]
Length = 212
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 100/218 (45%), Gaps = 55/218 (25%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDV 61
A+D V + N++VL+DE +A R+GLIPL +D + L D D + V TLD
Sbjct: 41 AVDTVDIVENTSVLADEGLAHRLGLIPLRTDSSEFKNLAEIDPD--DPINR--VMLTLDS 96
Query: 62 KCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYA 121
+TR V +++L S D+ V P++ D I IV+L GQ +++ AYA
Sbjct: 97 GEAA-ETRTVLSSELVSEDSSVKPIS--------------DTIPIVELAPGQRIKVEAYA 141
Query: 122 KKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAK 181
+ G G EHAKWN S S L T E
Sbjct: 142 RLGRGTEHAKWN---------------------------SSNVSVLTATDKE-------- 166
Query: 182 PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++ +ES GA+ P +V+ GVT L ++L++ +T L
Sbjct: 167 -DERILTIESTGAMDPAQLVLEGVTELSRRLADFRTML 203
>gi|195342596|ref|XP_002037886.1| GM18508 [Drosophila sechellia]
gi|194132736|gb|EDW54304.1| GM18508 [Drosophila sechellia]
Length = 331
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/253 (28%), Positives = 118/253 (46%), Gaps = 43/253 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTL 59
MAI+ V + N++++ DE +A R+GL+PL +D R+ R + +E ++EF L
Sbjct: 77 MAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADP---RLFAYRTEESTEAGTEQDTLEFEL 133
Query: 60 DVKCVD--DQTRHVTTADLKSTDARV----VPVTSRNRDADMNEYGET------DDILIV 107
VKC D + + D + +V + + + A + Y E+ DDILI
Sbjct: 134 KVKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQI--YSESAVNCIHDDILIA 191
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE- 166
+LR G EL LR A KG G++HAK++P A + P + + K ++ +S
Sbjct: 192 QLRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLPLIKLNREVTGKDAYLLQNCFSPG 251
Query: 167 -LDETQHEAPYNWEAK-----------------------PNKYFFNVESAGALKPENIVI 202
+ ++E Y +A+ + Y F+VES GALKP+ I +
Sbjct: 252 VIGIDENETAYVKDARYDTCSRNVYRYPQLNDAVTLARIRDHYIFSVESVGALKPDVIFL 311
Query: 203 MGVTVLKQKLSNL 215
V VLK+K L
Sbjct: 312 EAVKVLKRKCRAL 324
>gi|301092813|ref|XP_002997258.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
gi|262111439|gb|EEY69491.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Phytophthora infestans T30-4]
Length = 343
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 123/279 (44%), Gaps = 49/279 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + NS+++ DE +A R+GLIPL D D + E ++ F LD
Sbjct: 74 MAIEHVYIWNNSSIIQDEVLAHRLGLIPLNVDP--REFQAFPDNEEAEATDENTIVFKLD 131
Query: 61 VKCV------DDQTRHVTTADLKSTDARVVPVTSRN-RDADMNEYGETDDILIVKLRKGQ 113
V C D T+ + ++ + S D VP ++ R + E DIL+ KLR GQ
Sbjct: 132 VTCKFDPEHPKDPTKAIHSS-VYSRDLEWVPQGNQEERFGSIRPVHE--DILMAKLRPGQ 188
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHE 173
+ L A+ +KG GK+HAK++P A + L PK + K E ++ E
Sbjct: 189 SIALEAHCRKGVGKDHAKFSPVATASYR----------LMPKVELMEKVEGTDAKRLVEE 238
Query: 174 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPY 233
F++E G + P +V + Q A I E +
Sbjct: 239 CHIG--------LFDIEDIGGV-PTAVV--------------KDQRACTMCRNCIREPSW 275
Query: 234 NWEAKPNK----YFFNVESAGALKPENIVIMGVTVLKQK 268
N + + + + F+VES G +KPE +++ + VL +K
Sbjct: 276 NEKIRLGRQSDHFIFSVESVGMIKPEELLLEALNVLAEK 314
>gi|255716882|ref|XP_002554722.1| KLTH0F12056p [Lachancea thermotolerans]
gi|238936105|emb|CAR24285.1| KLTH0F12056p [Lachancea thermotolerans CBS 6340]
Length = 350
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 102/251 (40%), Gaps = 35/251 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A ++V N++V+ DE +A RIGL PL D + + + F E ++ TL+
Sbjct: 94 VAAEYVYFFNNTSVIQDEVLAHRIGLTPLKVDPDMLSWVDTSVPEAERFTDENTIVLTLN 153
Query: 61 VKCVD--DQTRHVT-------TADLKSTDARVVPVTSRNRDADMNEYGETD-DILIVKLR 110
V+C D + T A + + D + P + N D DIL+ KLR
Sbjct: 154 VRCTRNPDAPKDCTDPKILYRNAHIYARDLKFEPQGKQRETFAKNPVVPADPDILLAKLR 213
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL------------------ 152
GQE+ LRA+ G G +HAK++P + + P ++ +
Sbjct: 214 PGQEISLRAHCVLGIGSDHAKFSPVSTASYRLMPHINITQPITGESAQRFAKCFSPGVIG 273
Query: 153 -------FPKPDEWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGV 205
F K L + E N + FNVESAGA+ PE I V
Sbjct: 274 INDNGEAFVKDARHDTVSREVLRHEEFEGKVKLGRVKNHFIFNVESAGAMTPEEIFFKSV 333
Query: 206 TVLKQKLSNLQ 216
+LK K L+
Sbjct: 334 RILKNKAEYLK 344
>gi|327400272|ref|YP_004341111.1| DNA-directed RNA polymerase subunit D [Archaeoglobus veneficus
SNP6]
gi|327315780|gb|AEA46396.1| DNA-directed RNA polymerase subunit D [Archaeoglobus veneficus
SNP6]
Length = 261
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 43/242 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV-DFCSECSVEFTL 59
MA+D+V + N++ L DE +A RIGLIPL ++ +++ +C+C + C C V L
Sbjct: 39 MAVDYVDVYLNTSYLYDEILAHRIGLIPLKTN--LEKFNMPDECSCGGEGCPNCQVSLRL 96
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+V + + V + D S D VPV D+I +V+L KGQ+L + A
Sbjct: 97 NV----EGPKLVYSGDFVSDDPETVPVY--------------DNIPVVELYKGQQLMIEA 138
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDP---------------DNSMRHTLFPKPDE------ 158
A+ G GKEH+K+ P + ++ P + R+ L K +
Sbjct: 139 VARLGTGKEHSKYQPVSICAYKVIPRIEISGECNGCGDCVNACSRNVLEAKDGKIEVKNI 198
Query: 159 WPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
S E E E N + F VE G+L ++ + +LK+K + +
Sbjct: 199 LSCSMCMECVNVCTEEAIKVE-DTNDFLFTVEGVGSLPVRTVMRKALEILKKKAEEMNSI 257
Query: 219 LA 220
LA
Sbjct: 258 LA 259
>gi|300707120|ref|XP_002995782.1| hypothetical protein NCER_101243 [Nosema ceranae BRL01]
gi|239604995|gb|EEQ82111.1| hypothetical protein NCER_101243 [Nosema ceranae BRL01]
Length = 233
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 28/222 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ ID V++E N+T L DE I+ R+GL+PL + + +++ DC C D C +CSV TL+
Sbjct: 39 VTIDLVEIEINNTSLPDEMISHRLGLVPLYTKK---DLVFRDDCACDDICDKCSVSLTLN 95
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V D VT DLKS D V+ + +I KL Q L++
Sbjct: 96 VSNNTDMPMVVTCKDLKSQDDVVIRSSP----------------VICKLGTRQNLKVICK 139
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
A KG GK H+KW+P + V FEYD N R T + W + +++D E N
Sbjct: 140 AFKGVGKIHSKWSPVSVVGFEYDSGNRSRSTTY-----WRE---TDVDNECKEEEANLID 191
Query: 181 KPNKYFFNVESA-GALKPENIVIMGVTVLKQKLSNLQTQLAH 221
+ + VE G +P +I+ G+ +LK K L+ +L +
Sbjct: 192 EITEVKMCVEVVEGFGRPVDILRKGLEILKGKYETLRNELIN 233
>gi|410075079|ref|XP_003955122.1| hypothetical protein KAFR_0A05520 [Kazachstania africana CBS 2517]
gi|372461704|emb|CCF55987.1| hypothetical protein KAFR_0A05520 [Kazachstania africana CBS 2517]
Length = 334
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 112/254 (44%), Gaps = 41/254 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
+A+++V N++V+ DE +A RIGL+PL D +L D + D F E ++
Sbjct: 78 VAVEYVYFLNNTSVIQDEVLAHRIGLVPLKVDP---DMLTWIDSSLPDDEKFTDENTIVL 134
Query: 58 TLDVKCV--DDQTRHVT-------TADLKSTDARVVPVTSRNRDADMNEYGETD-DILIV 107
TL+VKC D R T +++ ++D + P + N D IL+
Sbjct: 135 TLNVKCTRNPDAPRDCTDPNILYRNSNVYASDLKFEPQGKQVETFANNAVVPCDPKILLA 194
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FP-- 154
KLR GQE+ LRA+ G G +HAK++P A + P + + FP
Sbjct: 195 KLRPGQEISLRAHCILGIGSDHAKFSPVATASYRLLPHIEITEPITGESAKRFQKCFPAG 254
Query: 155 ----KPDEWPKSEYSELDETQHEA----PYNWEAKPNK----YFFNVESAGALKPENIVI 202
K + + S D E +N + K + + FNVES GA+ PE I
Sbjct: 255 VIGIKENGDAYVQDSRKDTVSREVYRHEEFNGKVKLGRIRDHFVFNVESTGAMTPEEIFF 314
Query: 203 MGVTVLKQKLSNLQ 216
V +LK K L+
Sbjct: 315 KSVRILKNKAEYLK 328
>gi|443702676|gb|ELU00597.1| hypothetical protein CAPTEDRAFT_171865 [Capitella teleta]
Length = 349
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 108/248 (43%), Gaps = 40/248 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V++ N++++ DE A R+GLIP+ +D R+ R + E ++ F L
Sbjct: 83 MAIDKVKIYNNTSIIQDEVFAHRLGLIPIKADP---RMFEYRSEDNEEGTPEDTLVFELK 139
Query: 61 VKCVDDQ--TRHVTTAD-------LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRK 111
VKC ++ T H T D + + D + +P ++ + DDILI KLR
Sbjct: 140 VKCTMNKNATEHATDPDELFINHKVTTRDMKWIPKGNQQELFKDSICPVQDDILIAKLRP 199
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW------------ 159
GQE+ + + KG G++HAK++P A + P + + E
Sbjct: 200 GQEIDIEMHCVKGLGQDHAKFSPVATASYRLMPVIELTRPYLGEEAEQLAACFAPGVILV 259
Query: 160 -------------PKSEYSELDETQH---EAPYNWEAKPNKYFFNVESAGALKPENIVIM 203
P+++ + +H + + + F+VES GAL PE +V
Sbjct: 260 EEIKGQKTALVVNPRADTCSREVMRHAHLKDGVKLSQERYHFIFSVESTGALPPEALVCE 319
Query: 204 GVTVLKQK 211
+ VL K
Sbjct: 320 AINVLMSK 327
>gi|237839019|ref|XP_002368807.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Toxoplasma gondii ME49]
gi|211966471|gb|EEB01667.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Toxoplasma gondii ME49]
gi|221502105|gb|EEE27849.1| DNA-directed RNA polymerase I, putative [Toxoplasma gondii VEG]
Length = 346
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ VQ+ N+ V+ DE +A R+GLIP +VD + + E ++ +L
Sbjct: 97 VAIETVQIWQNTGVVQDEVLAHRLGLIPF----IVDPTALNYRQPNQEVTDENALRVSLH 152
Query: 61 VKCVDDQTR-HVTTADLKSTDARVVPVTSRNRDADMNEYGET--DDILIVKLRKGQELRL 117
VKC + H T+ + + + P++ ++A DILI KLR GQE+ L
Sbjct: 153 VKCTEQSLGPHQTSLPVYAKHIKWEPMSPSQKEAFAANPPRAVHPDILITKLRPGQEIEL 212
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL 152
+AY +KG GK HAKW+P + +P+ + ++
Sbjct: 213 KAYLEKGVGKTHAKWSPVCTAVYRLEPEIVFKESI 247
>gi|302845439|ref|XP_002954258.1| hypothetical protein VOLCADRAFT_64591 [Volvox carteri f.
nagariensis]
gi|300260463|gb|EFJ44682.1| hypothetical protein VOLCADRAFT_64591 [Volvox carteri f.
nagariensis]
Length = 354
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 112/264 (42%), Gaps = 56/264 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+G++PL +D L+ + ++ F LD
Sbjct: 102 MAIEHVFMINNTSIIQDEVLAHRLGMVPLLADPQ----LFEAKVAEEAPSEKNTLVFKLD 157
Query: 61 VKCVDDQTRHV----------------TTADLKSTDARVV--PVTSRNRDADMNEYGETD 102
V C + R TT + A + P T + R D
Sbjct: 158 VTCKRGENRMFSGQLEWLPGGSELPEETTCRFAAGQAHLFADPATPKPRAVH-------D 210
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP----------DNSMRHTL 152
DIL+ KLR GQ ++L A+A KG GKEHAKW+P A + P D+ + L
Sbjct: 211 DILLAKLRPGQTIQLEAHATKGRGKEHAKWSPVATAWYRLQPVVHVIQDVAVDSDVGQEL 270
Query: 153 FPK-PDEWPKSEYSE----------------LDETQHEAPYNWEAKPNKYFFNVESAGAL 195
P + E L++ + + ++ K + + F +ES+GA+
Sbjct: 271 MSACPGLFVADEGGRVLRANDARGHEMLRRLLEQERFSSCVSYRKKKDHFIFTIESSGAV 330
Query: 196 KPENIVIMGVTVLKQKLSNLQTQL 219
P ++ + +L +K +L +L
Sbjct: 331 PPLELLGQALELLGEKARDLTGKL 354
>gi|68069197|ref|XP_676509.1| DNA-directed RNA polymerase I [Plasmodium berghei strain ANKA]
gi|56496241|emb|CAH97452.1| DNA-directed RNA polymerase I, putative [Plasmodium berghei]
Length = 334
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 112/258 (43%), Gaps = 52/258 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILY--------SRDCTCVDFCSE 52
+AI+ V + N+ V++DE + R+GLIP D D I + + +C C
Sbjct: 86 IAIEKVNIFQNTGVIADEILCHRLGLIPFKFD--ADLINFKDTHEKYNNLNCFC------ 137
Query: 53 CSVEFTLDVKCVDDQTRHVTTADLK---STDARVVPVTSRNR-DADMNEYGETDD-ILIV 107
F L VKC + + + S D + P+ + + N DD ILI
Sbjct: 138 ----FKLHVKCNSINNNKIGNENYQCIYSKDLKWCPLNEEQKIKFESNPPKVVDDNILIT 193
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFE----YDPDNSMRHTLFPKPDEW---P 160
KL GQE+ L + +KG GK HAKW+P ++ +D D + T + K D P
Sbjct: 194 KLGNGQEIELICFLEKGIGKTHAKWSPVCTAVYKMFPTFDFDVHEKFTNYEKKDILSICP 253
Query: 161 KSEYSELDETQHEAPYN-------------------WEAKPNKYFFNVESAGALKPENIV 201
K+ + +++E+ + N ++ K N + F VES G NI
Sbjct: 254 KNVF-DIEESGNLVAKNPLDCSSCRACIEKYPQKISFQKKKNHFIFTVESTGCFSSANIF 312
Query: 202 IMGVTVLKQKLSNLQTQL 219
+ +LK+K+ N++ L
Sbjct: 313 KKALNILKEKVMNVKEML 330
>gi|171186411|ref|YP_001795330.1| RNA polymerase insert [Pyrobaculum neutrophilum V24Sta]
gi|229564213|sp|B1YC30.1|RPOD_THENV RecName: Full=DNA-directed RNA polymerase subunit D
gi|170935623|gb|ACB40884.1| RNA polymerase insert [Pyrobaculum neutrophilum V24Sta]
Length = 262
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 109/234 (46%), Gaps = 34/234 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC-TCVDFCSECSVEFTL 59
MAID V + N++V+ DE +A R+GLIPLT+ + + DC + + SEC+V FTL
Sbjct: 40 MAIDTVIVVNNTSVMYDEMLAHRLGLIPLTTP--LQSLPPIEDCESGLADPSECTVRFTL 97
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V + T V + DL S VVPV DI IVKL KGQ + L A
Sbjct: 98 QVNADGEVT--VYSGDLVSERPDVVPVHK--------------DIPIVKLVKGQSIVLEA 141
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMR-HTLFPKPDEWPKSEYSELDETQHEAP--- 175
YAK G + HAKW A + Y P +R + + E + + L+ T ++A
Sbjct: 142 YAKLGRARGHAKWQ-AALASYYYYPRVEVRDESCRERCREVCRDLTNPLECTFNKAMTCR 200
Query: 176 --------YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
+WE NKY F VES G + + +LK+K S LA
Sbjct: 201 DLCGDKLHVDWER--NKYVFWVESFGNYDVDTALREAFRILKRKYSLFLDALAR 252
>gi|375083505|ref|ZP_09730525.1| DNA-directed RNA polymerase subunit D [Thermococcus litoralis DSM
5473]
gi|374741832|gb|EHR78250.1| DNA-directed RNA polymerase subunit D [Thermococcus litoralis DSM
5473]
Length = 258
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 103/244 (42%), Gaps = 54/244 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+ LIPLT+ DR + D +D ++T+
Sbjct: 39 FAVDEVEFYENDSALFDEIIAHRLALIPLTTPS--DR--FELDALELD-------DYTVT 87
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + + + DLKS D V PVT DI IVKL +GQ L AY
Sbjct: 88 LGLEAEGPAIIYSGDLKSDDPDVKPVTP--------------DIPIVKLAEGQRLVFNAY 133
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD-----EWPKSEYSELDETQHEA- 174
AK G GK+HAKW P F Y + H P+ E + ++E ++E
Sbjct: 134 AKLGRGKDHAKWQP----GFAYYKYLTKMHVSKEVPNWEKIKELAARKKLPIEENENELI 189
Query: 175 --------------PY-----NWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
PY E PN + F VES G L E IV + + +L +K
Sbjct: 190 ITTLTSFYLPREFDPYLGDKIKEEVVPNTFVFTVESNGELPVEEIVALALKILMRKSDKF 249
Query: 216 QTQL 219
+L
Sbjct: 250 INEL 253
>gi|72387431|ref|XP_844140.1| DNA-directed RNA polymerase II subunit 3 [Trypanosoma brucei
TREU927]
gi|62360648|gb|AAX81059.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
brucei]
gi|70800672|gb|AAZ10581.1| DNA-directed RNA polymerase II subunit 3, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|261327301|emb|CBH10277.1| DNA-directed RNA polymerase II subunit 3,putative [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTL 59
+ ++ V + N++VL DE IA RIGL+PL S ++ + DC C C EC + L
Sbjct: 45 LGVESVTIIQNTSVLPDEMIAHRIGLVPLYSKRA-KQMQFFHDCLCGGTGCIECQITGEL 103
Query: 60 DVKCVDDQTRHVTTAD-LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
V+C +Q AD LK D V PV+S R + ++ L + QE+ LR
Sbjct: 104 KVRCPSNQHSLQVFADSLKIDDEGVYPVSSEERG-----------VWLLTLGRSQEINLR 152
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPD 145
+K K HAK+ P + V Y+P+
Sbjct: 153 VLIRKSIAKTHAKFMPVSTVSMRYEPE 179
>gi|15219820|ref|NP_176282.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|30696474|ref|NP_849833.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|12323800|gb|AAG51868.1|AC079675_3 RNA polymerase subunit; 10595-12672 [Arabidopsis thaliana]
gi|110741863|dbj|BAE98873.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|332195618|gb|AEE33739.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332195619|gb|AEE33740.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 375
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 122/289 (42%), Gaps = 53/289 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE +A R+GLIP+ +D + L D + ++ F L
Sbjct: 112 MAIEKVLIAYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHD----QANEKNTIVFKLH 167
Query: 61 VKCVDDQTR-HVTTADLK-----------STDARVVPVTSRNRDADMNEYGETD------ 102
VKC ++ R V T+DLK S + P T + + E
Sbjct: 168 VKCPKNRPRLKVLTSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITP 227
Query: 103 ---DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW 159
DILI KL GQE+ L A+A KG GK HAKW+P + P+ +R +
Sbjct: 228 CDLDILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEV------- 280
Query: 160 PKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+ E +E + P N F++E G K TV + + + L
Sbjct: 281 -EDELAE--RLVNVCPQN--------VFDIEDMGKGKKR------ATVAQPR----KCTL 319
Query: 220 AHDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 268
+ V + + N + FN+ES G+L PE + V +L+ K
Sbjct: 320 CKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAK 368
>gi|348665187|gb|EGZ05020.1| hypothetical protein PHYSODRAFT_356217 [Phytophthora sojae]
Length = 343
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 124/279 (44%), Gaps = 49/279 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + NS+++ DE +A R+GL+PL D D + E ++ F LD
Sbjct: 74 MAIEHVYIWNNSSIIQDEVLAHRLGLVPLNVDP--REFQAFPDNEEAEATDENTIVFKLD 131
Query: 61 VKCV------DDQTRHVTTADLKSTDARVVPVTSRN-RDADMNEYGETDDILIVKLRKGQ 113
V C D T+ + ++ + S D VP ++ R + E DILI KLR GQ
Sbjct: 132 VTCKFDPEHPKDPTKAIHSS-VYSRDLEWVPQGNQEERFGSIRPVHE--DILIAKLRPGQ 188
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHE 173
+ L A+ +KG GK+HAK++P A + L PK + K + ++ + E
Sbjct: 189 SIALEAHCRKGVGKDHAKFSPVATASYR----------LMPKVELTEKVQGADAKKLVEE 238
Query: 174 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPY 233
F++E G + P +V + Q A I E +
Sbjct: 239 CQIG--------LFDIEDIGGV-PTAVV--------------KDQRACTMCRNCIREPGW 275
Query: 234 NWEA----KPNKYFFNVESAGALKPENIVIMGVTVLKQK 268
N + + + + F+VES G LKPE +++ + VL +K
Sbjct: 276 NEKISLGRQSDHFIFSVESVGMLKPEELLLEALNVLAEK 314
>gi|146412650|ref|XP_001482296.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 333
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 111/251 (44%), Gaps = 36/251 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A + V + N++V+ DE +A RIGLIPL D + + F E ++ +LD
Sbjct: 78 VAAESVYIFNNTSVIQDEVLAHRIGLIPLKVDPDLLSWVDPAQDEKEKFTDENTIVLSLD 137
Query: 61 VKCVDDQTRHVTTADLKS------TDARVVPVTSRNRDADM---NEYGETD-DILIVKLR 110
+ C + + D K AR + + R D+ N TD DILI KLR
Sbjct: 138 IACTKNPHPPAGSTDPKDLYRNAHVYARDLKFEPQGRQVDLFKNNPVVPTDPDILIAKLR 197
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPKPDEW 159
GQE+ LRA+ G G +HAK++P + + D + + FP
Sbjct: 198 PGQEISLRAHCILGIGSDHAKFSPVSTASYRLMSDIKITEPITGELAKRFQKCFPSGVIG 257
Query: 160 PKSEYSELDET----------QHEAPYNWEAKPNK----YFFNVESAGALKPENIVIMGV 205
+++ + + + +HE +N + K + + FNVES GA+ PE I V
Sbjct: 258 IENDTAFVKDARKDTVSREVLRHEE-FNGKVKLGRIRDHFIFNVESTGAMPPEEIFFKSV 316
Query: 206 TVLKQKLSNLQ 216
VLK K L+
Sbjct: 317 RVLKNKADYLR 327
>gi|340375977|ref|XP_003386510.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Amphimedon queenslandica]
Length = 346
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 121/265 (45%), Gaps = 43/265 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSR--DCTCVD-FCSECSVEF 57
MAI+ V + N++V+ D +A R+GLIPL +D L R D + + +EF
Sbjct: 82 MAIEKVHVINNTSVIQDGVLAHRMGLIPLFADPRKFSFLPPRTEDAPFPEQLTPQHMLEF 141
Query: 58 TLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-DILIV 107
L VKC +D + + S D + VP+ +++ +++ D DILI
Sbjct: 142 KLKVKCSRNVNAPSDSEDPNELYISHKVTSGDMKWVPIEDQSQLFSVHDIRPVDKDILIA 201
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSM-RHTLFPKPDEW------- 159
KLR GQE+ LR KG GK+HAK++P A + P+ ++ + + P ++
Sbjct: 202 KLRPGQEIDLRLICVKGIGKDHAKFSPVATASYRLLPEITLTKPVVGPAAEKLASCFSKG 261
Query: 160 -----------------PKSEYSELDETQHE---APYNWEAKPNKYFFNVESAGALKPEN 199
P+ + + +HE + + F+VES GAL +
Sbjct: 262 VIRVQDVSGQKRAVVSNPRRDTCSREVLRHEDLKDSVQLSRVKDHFIFSVESTGALSADT 321
Query: 200 IVIMGVTVLKQKLSNLQTQLAHDRV 224
+V+ + V+ +K ++ ++L DR+
Sbjct: 322 LVLEAIRVMIEKCNHFISEL--DRI 344
>gi|190348712|gb|EDK41218.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 333
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 111/251 (44%), Gaps = 36/251 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A + V + N++V+ DE +A RIGLIPL D + + F E ++ +LD
Sbjct: 78 VAAESVYIFNNTSVIQDEVLAHRIGLIPLKVDPDLLSWVDPAQDEKEKFTDENTIVLSLD 137
Query: 61 VKCVDDQTRHVTTADLKS------TDARVVPVTSRNRDADM---NEYGETD-DILIVKLR 110
+ C + + D K AR + + R D+ N TD DILI KLR
Sbjct: 138 IACTKNPHPPAGSTDPKDLYRNAHVYARDLKFEPQGRQVDLFKNNPVVPTDPDILIAKLR 197
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPKPDEW 159
GQE+ LRA+ G G +HAK++P + + D + + FP
Sbjct: 198 PGQEISLRAHCILGIGSDHAKFSPVSTASYRLMSDIKITEPITGESAKRFQKCFPSGVIG 257
Query: 160 PKSEYSELDET----------QHEAPYNWEAKPNK----YFFNVESAGALKPENIVIMGV 205
+++ + + + +HE +N + K + + FNVES GA+ PE I V
Sbjct: 258 IENDTAFVKDARKDTVSREVLRHEE-FNGKVKLGRIRDHFIFNVESTGAMPPEEIFFKSV 316
Query: 206 TVLKQKLSNLQ 216
VLK K L+
Sbjct: 317 RVLKNKADYLR 327
>gi|170291194|ref|YP_001738010.1| DNA-directed RNA polymerase subunit D [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175274|gb|ACB08327.1| DNA-directed RNA polymerase subunit D [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 251
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 101/239 (42%), Gaps = 46/239 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
AID V N+T DE+IA R+ +IPL + S D VD +E +
Sbjct: 39 FAIDEVIFFENTTPFFDEYIAHRLAMIPLRT---------SLDVLRVDPNRTVVLELSKK 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
K D V + +LKS+D + P D I I+K+RKGQ+LR +A
Sbjct: 90 AK---DPIEVVYSGELKSSDPLIYPAN--------------DKIPIIKMRKGQKLRFQAI 132
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDP----------DNSMRHTLFPKPDEWPKSEYSELDET 170
A+ G GK+H+KW+P A V + Y P D S + +Y L E
Sbjct: 133 ARIGRGKDHSKWSPAAAVGYSYMPIYELKDPVECDLSQCSNCIESDGGISRVDYPVLCEG 192
Query: 171 QHEAPYNWEAK-PNK---------YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
EA + P+K + ES G+L+PE I + +K KL L ++
Sbjct: 193 CLEALERCRVRNPDKIIRRWDESRIIISYESTGSLRPEEIFSEALNQVKGKLGELLNKI 251
>gi|209876648|ref|XP_002139766.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Cryptosporidium muris RN66]
gi|209555372|gb|EEA05417.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Cryptosporidium muris RN66]
Length = 351
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 107/259 (41%), Gaps = 43/259 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD------EVVDRILYSRDCTCVDFCSECS 54
+AI+ VQ+ NS V+ DE +A R+GLIP D D+ L ++ C C EC+
Sbjct: 102 VAIETVQIYQNSGVIQDEVLAHRLGLIPFNIDLDLIDFRAEDQDLNEKNSVCFKLCVECN 161
Query: 55 VEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET--DDILIVKLRKG 112
D+ D +T+ + S D VP++ + + DILI KLR G
Sbjct: 162 ---KYDI----DDKNGITSKAIYSKDLIWVPMSESQKQIFEKKPPSVVYPDILITKLRPG 214
Query: 113 QELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE------WPKSEYSE 166
Q + Y +KG GK HAKW+P + + P+ D P + +
Sbjct: 215 QVIEAILYCEKGIGKTHAKWSPVSTATYRLLPEFKFPEGYITGKDAKEFVEVCPMNVFDI 274
Query: 167 LDETQ-----------------HEAPYNWEAKPNK--YFFNVESAGALKPENIVIMGVTV 207
D T + P E NK + F++ES G++ P +V + +
Sbjct: 275 EDITGKVYVKNPRNCTTCRACIEKFPKKVEIFKNKHHFIFSIESTGSISPIQLVKTAINI 334
Query: 208 LKQKLSNLQTQLAHDRVFY 226
L++K + + +FY
Sbjct: 335 LREKSHKINNSI---DIFY 350
>gi|514322|gb|AAB00528.1| RNA polymerase subunit [Arabidopsis thaliana]
gi|1586549|prf||2204246A RNA polymerase
Length = 375
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 127/290 (43%), Gaps = 55/290 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE +A R+GLIP+ +D + L D + ++ F L
Sbjct: 112 MAIEKVLIAYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHD----QANEKNNIVFKLH 167
Query: 61 VKCVDDQTR-HVTTADLK-----------STDARVVPVT----SRNRDADMNEYGETD-- 102
VKC ++ R V T+DLK S + P T S ++D+ + E+
Sbjct: 168 VKCPKNRPRLKVLTSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDS-LPEFANNPIT 226
Query: 103 ----DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE 158
DILI KL GQE+ L A+A KG GK HAKW+P + P+ +R +
Sbjct: 227 PCDLDILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEV------ 280
Query: 159 WPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
+ E +E + P N F++E G K TV + + +
Sbjct: 281 --EDELAE--RLVNVCPQN--------VFDIEDMGKGKKR------ATVAQPR----KCT 318
Query: 219 LAHDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 268
L + V + + N + FN+ES G+L PE + V +L+ K
Sbjct: 319 LCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAK 368
>gi|71031382|ref|XP_765333.1| DNA-directed RNA polymerase I [Theileria parva strain Muguga]
gi|68352289|gb|EAN33050.1| DNA-directed RNA polymerase I, putative [Theileria parva]
Length = 303
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 15/145 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A++ VQ+ N+ V+ DE +A R+GLIP D + + C + + SV F L
Sbjct: 71 LAVETVQIYQNTGVIQDELLAHRLGLIPFAIDPDLFNFKSNFKTNCEEINDKNSVCFKLK 130
Query: 61 VKCVD-DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
VK DQ+ ++++ L D PV DDILI KL GQE+ L
Sbjct: 131 VKYNKFDQSDYLSSNSLMFKDNPPKPVY--------------DDILITKLAPGQEIDLNM 176
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDP 144
Y +KG GK H+KW+P + +++ P
Sbjct: 177 YLEKGIGKVHSKWSPVSTAVYKFMP 201
>gi|159115523|ref|XP_001707984.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia ATCC 50803]
gi|21842208|gb|AAM77734.1|AF510642_1 RNA polymerase II subunit Rpb3 [Giardia intestinalis]
gi|157436093|gb|EDO80310.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia ATCC 50803]
Length = 326
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 121/266 (45%), Gaps = 23/266 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC-----TCVDFCSECSV 55
+AID V+ NST L++EFIA R+GLIPL + + I Y C T ++ C EC+
Sbjct: 41 LAIDIVKFLDNSTTLTEEFIAHRLGLIPLRTAGSLSAISYWYTCDEEHSTEIE-CRECTF 99
Query: 56 EFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQEL 115
+ TL++ + R VT D+K D + S ++ ET I I+KL G+ +
Sbjct: 100 KGTLNISNDSTKIRVVTDKDIK-FDHGGISTLSNYLESSFGA-AETPSIPILKLAPGESI 157
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAP 175
YA+K GK HAKW P A C P R L + + P+ +++++ T
Sbjct: 158 NALLYARKDRGKIHAKWCPAA--CVVLRP--LARIILCDEFERLPQ-QHNDVART----- 207
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNW 235
Y E P F +K N I +S + + +++ P
Sbjct: 208 YISETCPRNVFTIENRRVVVKDSNSCIFCNDCFNIPISLGEQGDNANTIWH-----PALV 262
Query: 236 EAKPNKYFFNVESAGALKPENIVIMG 261
+PN ++F++ES G++ +I +M
Sbjct: 263 TQQPNAFYFSIESNGSISAYDIFLMA 288
>gi|302774338|ref|XP_002970586.1| hypothetical protein SELMODRAFT_231624 [Selaginella moellendorffii]
gi|300162102|gb|EFJ28716.1| hypothetical protein SELMODRAFT_231624 [Selaginella moellendorffii]
Length = 353
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 113/266 (42%), Gaps = 52/266 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSE-CSVEFTL 59
MAI+ V ++ N++V+ DE A R+GL+P+ +D R+ + T D +E ++ F+L
Sbjct: 94 MAIEKVLIKDNTSVIQDEVFAHRLGLVPIKADP---RLFNEK--TNEDVATEKNTIVFSL 148
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSR----------------NRDADMNEYG-ETD 102
+VKC R + A +KS + +P S +D N+
Sbjct: 149 EVKCTRQGDRMIN-ASVKSDQLKWLPGGSLYSMTDDSNKTYTSFSCRQDTIQNDIAPRYK 207
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD-----NSMRHTLFPKPD 157
DIL+ KLR GQ + L A+A KG GK HAKW+P A + P+
Sbjct: 208 DILLAKLRPGQAIELEAHAVKGIGKTHAKWSPVATAAYRMLPEVVLLEEIEDELAEELVQ 267
Query: 158 EWPKSEYSELD-----ETQHEAPY------------NWEAK------PNKYFFNVESAGA 194
+ P + D + AP +WE + + + F VES GA
Sbjct: 268 KCPMKVFDIEDIMGGKRARVAAPRSCTLCRECIRGDDWEKRVQLRRVKDHFIFTVESTGA 327
Query: 195 LKPENIVIMGVTVLKQKLSNLQTQLA 220
L PE + V +L K + +L+
Sbjct: 328 LPPEVLFTEAVKILSAKCQRIYNELS 353
>gi|337283749|ref|YP_004623223.1| DNA-directed RNA polymerase subunit D [Pyrococcus yayanosii CH1]
gi|334899683|gb|AEH23951.1| DNA-directed RNA polymerase subunit D [Pyrococcus yayanosii CH1]
Length = 259
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 107/248 (43%), Gaps = 62/248 (25%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+ +IPLT+ VDR ++ D +D ++T+
Sbjct: 40 FAVDEVEFYENDSALFDEIIAHRLAMIPLTTP--VDR--FALDSLELD-------DYTVT 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DLKS D V PVT DI IVKL +GQ L AY
Sbjct: 89 LSLEAEGPGVVYSGDLKSDDPDVKPVTP--------------DIPIVKLAEGQRLVFNAY 134
Query: 121 AKKGFGKEHAKWNP----------------------------TAGVCFEYDPDNSMRHTL 152
AK G GK+HAKW P G+ E + + TL
Sbjct: 135 AKLGRGKDHAKWQPGFAYYKYYTKIHISKSIPGWEKLKSLAEKRGLPVEETDEEVIVTTL 194
Query: 153 FPKPDEWPKSEYSELDETQHEAPYNW-EAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 211
KP P+ E+ E +E+ W E P Y F VE+ G L E +V + + +L +K
Sbjct: 195 --KPFYIPR-EFEE-----YESKEIWEEIVPEAYVFTVETNGELPVEEVVGIALRILMRK 246
Query: 212 LSNLQTQL 219
++L
Sbjct: 247 SDRFISEL 254
>gi|302770012|ref|XP_002968425.1| hypothetical protein SELMODRAFT_409226 [Selaginella moellendorffii]
gi|300164069|gb|EFJ30679.1| hypothetical protein SELMODRAFT_409226 [Selaginella moellendorffii]
Length = 352
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 113/266 (42%), Gaps = 52/266 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSE-CSVEFTL 59
MAI+ V ++ N++V+ DE A R+GL+P+ +D R+ + T D +E ++ F+L
Sbjct: 93 MAIEKVLIKDNTSVIQDEVFAHRLGLVPIKADP---RLFNEK--TNEDVATEKNTIVFSL 147
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSR----------------NRDADMNEYG-ETD 102
+VKC R + A +KS + +P S +D N+
Sbjct: 148 EVKCTRQGDRMIN-ASVKSDQLKWLPGGSLYSMTDDSNKTYTSFSCRQDTIQNDIAPRYK 206
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD-----NSMRHTLFPKPD 157
DIL+ KLR GQ + L A+A KG GK HAKW+P A + P+
Sbjct: 207 DILLAKLRPGQAIELEAHAVKGIGKTHAKWSPVATAAYRMLPEVVLLEEIEDELAEELVQ 266
Query: 158 EWPKSEYSELD-----ETQHEAPY------------NWEAK------PNKYFFNVESAGA 194
+ P + D + AP +WE + + + F VES GA
Sbjct: 267 KCPMKVFDIEDIMGGKRARVAAPRSCTLCRECIRGDDWEKRVQLRRVKDHFIFTVESTGA 326
Query: 195 LKPENIVIMGVTVLKQKLSNLQTQLA 220
L PE + V +L K + +L+
Sbjct: 327 LPPEVLFTEAVKILSAKCQRIYNELS 352
>gi|342180433|emb|CCC89910.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 392
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 114/265 (43%), Gaps = 54/265 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTL 59
+A+ V + N++VL DE IA RIGL+PL S + + L + DC C C +C + +
Sbjct: 105 LAVVSVTIVQNTSVLPDEMIAHRIGLVPLYSMKAREMQL-AGDCLCGGLGCIKCQITGEM 163
Query: 60 DVKCVDDQ-TRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
V+C D+ + V T LK D +V PV+S R + ++ L + QEL LR
Sbjct: 164 KVRCPSDRHSLQVFTDSLKIDDEQVYPVSSEERG-----------VWLLTLGRSQELDLR 212
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEA---- 174
+K K HAK+ P + V Y P+ + + + P+ L+ +H A
Sbjct: 213 ILIRKSIAKAHAKFMPVSTVSMRYAPEVVLNEDVISSLE--PEQRRQWLECCKHRARRTD 270
Query: 175 ----PYNWE----------------------AKPNK------YF-FNVESAGALKPENIV 201
+N +P + YF F VES G L ++
Sbjct: 271 GQTEEFNITNLCVECLLKEPSVTAFTEPLVLVRPKRDQRGYYYFTFTVESTGVLPVLQMM 330
Query: 202 IMGVTVLKQKLSNLQTQLAHDRVFY 226
+ VL++KL ++ L +RV Y
Sbjct: 331 YDAIDVLRKKLERVRDGLT-ERVVY 354
>gi|341582027|ref|YP_004762519.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. 4557]
gi|340809685|gb|AEK72842.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. 4557]
Length = 260
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 105/244 (43%), Gaps = 54/244 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+G+IPLT+ +R +S D +D E+T+
Sbjct: 41 FAVDEVEFFENDSALFDEIIAHRVGMIPLTTPH--ER--FSLDSLELD-------EYTVT 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DLKS+D V P +I IVKL +GQ L AY
Sbjct: 90 LSLEAEGPGMVYSGDLKSSDEGVKPANP--------------NIPIVKLAEGQRLTFNAY 135
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE-----LDETQHE-- 173
AK G GK+HAKW P F Y + H PD E +E +ET E
Sbjct: 136 AKLGRGKDHAKWQP----GFVYYKYLTRIHVSKEVPDWKELKELAERRGLPAEETDGELV 191
Query: 174 --------APYNWEAK----------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
P ++A PN + F VE+ G L E IV + + +L +K
Sbjct: 192 ITTIKAFYLPRKFDAYVGEKIWEETVPNAFVFTVETNGELPVEEIVTIALKILMRKSDRF 251
Query: 216 QTQL 219
++L
Sbjct: 252 ISEL 255
>gi|429328059|gb|AFZ79819.1| DNA-directed RNA polymerase I, putative [Babesia equi]
Length = 315
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 107/250 (42%), Gaps = 39/250 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V++ N+ V+ DE +A R+GL+P D + Y + D S C F L
Sbjct: 72 LAIETVEIRQNTGVVQDELLAHRLGLVPFNVDP--EDFSYKNHESLGDKNSLC---FKLS 126
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNR-----DADMNEYGETDDILIVKLRKGQEL 115
KC+ ++ T L + D P + D +G DIL+ KL GQEL
Sbjct: 127 AKCLRSDSQGRNTLSLYAKDLVWHPFNEAQKLKFQDDPPRPIHG---DILLTKLAGGQEL 183
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFP--KPDEWPKSEYSELDETQHE 173
L AY +KG GK H+KW+P + + + P+ + FP K D+ E +D +
Sbjct: 184 DLTAYLEKGIGKTHSKWSPVSTAVYRFKPEITFSEE-FPLSKSDKEELCELCPMDVFSMK 242
Query: 174 A---------------------PYNWEAKP--NKYFFNVESAGALKPENIVIMGVTVLKQ 210
P + K N F++ES GA+ +++ + VLK
Sbjct: 243 KGDICIEDTLSCTSCRACVERFPKSVIVKKLNNHIIFSIESTGAVPSATLLLRAIEVLKN 302
Query: 211 KLSNLQTQLA 220
K L +++
Sbjct: 303 KSIRLMNRIS 312
>gi|212223251|ref|YP_002306487.1| DNA-directed RNA polymerase subunit D [Thermococcus onnurineus NA1]
gi|212008208|gb|ACJ15590.1| DNA-directed RNA polymerase, subunit D [Thermococcus onnurineus
NA1]
Length = 260
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 105/241 (43%), Gaps = 48/241 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+ +IPLT+ V+R +S D +D ++T+
Sbjct: 41 FAVDEVEFFENDSALFDEIIAHRLAMIPLTTP--VER--FSLDALELD-------DYTVT 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DLKS D V P +I IVKL +GQ L L AY
Sbjct: 90 LSLEAEGPGMVYSGDLKSDDEGVKPANP--------------NIPIVKLAEGQNLTLNAY 135
Query: 121 AKKGFGKEHAKWNPTAGVCFEY---------DPDNSMRHTLFPKPDEWPKSEYSELDETQ 171
AK G GK+HAKW P V ++Y PD L K + EL T
Sbjct: 136 AKLGRGKDHAKWQP-GFVYYKYLTKIHVSKDVPDWEELKALAEKRGLPVEETDEELVITT 194
Query: 172 HEA--------PYNW-----EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
+A PY E PN + F VES G L E IV + + +L +K ++
Sbjct: 195 TKAFYLPRKFEPYEGDKIREEVVPNTFVFTVESNGELPVEEIVTIALKILMRKSDRFISE 254
Query: 219 L 219
L
Sbjct: 255 L 255
>gi|300120859|emb|CBK21101.2| unnamed protein product [Blastocystis hominis]
Length = 366
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 124/291 (42%), Gaps = 49/291 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV-VDRIL------YSRDCTCVDFCSEC 53
MAI V + N++V+ DE + R+GLIP+ +D D I ++R DF +
Sbjct: 74 MAISTVFMNNNTSVMQDEVLCHRLGLIPIKADANDFDYICPPGENGHNRS----DFTDKN 129
Query: 54 SVEFTLDVKCVD----DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET----DDIL 105
S++F L V C + + + + ++ + + R D+ E G+ DDI+
Sbjct: 130 SLKFNLRVTCPSLSELQKAANNRNVEYLTVYSQSLELEKLGRQLDLPE-GQIGLVHDDII 188
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
+ KL GQ + L YA KG G++HAKW+P + P S+R FPKP +E
Sbjct: 189 LTKLAPGQAIDLECYATKGVGEDHAKWSPVCTAVYRMRP--SIR---FPKPLVGEDAE-- 241
Query: 166 ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVF 225
+ P F++E G K ++ +L + + +
Sbjct: 242 ---RMKQTCPMG--------VFDIEDIGGEKTLHVA-----------HDLNCTMCRECIR 279
Query: 226 YVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
N N + F+VES G + +++V + VLKQK + +L
Sbjct: 280 LPENREKVQLGVIRNDFIFSVESTGCVSAKSLVPRALEVLKQKCETIIKEL 330
>gi|344232398|gb|EGV64277.1| hypothetical protein CANTEDRAFT_113900 [Candida tenuis ATCC 10573]
gi|344232399|gb|EGV64278.1| hypothetical protein CANTEDRAFT_113900 [Candida tenuis ATCC 10573]
Length = 336
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 111/262 (42%), Gaps = 57/262 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A + + + N++V+ DE +A RIGLIPL +D + + + + E ++ TLD
Sbjct: 80 VAAETIYVFNNTSVIQDEVLAHRIGLIPLKADPDLLTWVDTAQDEKSKYTDENTIVLTLD 139
Query: 61 VKCVDD--------------QTRHVTTADLK-STDARVV------PVTSRNRDADMNEYG 99
V C + + HV DLK + V PVT+ AD N
Sbjct: 140 VTCTHNPNAPKGSTNPKELYRNSHVYAKDLKFEPQGKQVELFKGNPVTA----ADPN--- 192
Query: 100 ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL------- 152
ILI KLR GQE+ LRA+ G G +HAK++P A + P ++ +
Sbjct: 193 ----ILIAKLRPGQEISLRAHCILGVGSDHAKFSPVATASYRLMPVIDIKQPISGEQAKR 248
Query: 153 ----FP--------KPDEWPKSEYSE------LDETQHEAPYNWEAKPNKYFFNVESAGA 194
FP K + + K + L + + K + + FN+ES G
Sbjct: 249 FQRCFPPGVVDIDSKGEAYVKDARRDTVSREVLRHEEFDGKVKLGRKRDHFIFNIESTGG 308
Query: 195 LKPENIVIMGVTVLKQKLSNLQ 216
+ PE I I + +LK K L+
Sbjct: 309 MPPEEIFIKSIRLLKSKADYLR 330
>gi|254580391|ref|XP_002496181.1| ZYRO0C12364p [Zygosaccharomyces rouxii]
gi|238939072|emb|CAR27248.1| ZYRO0C12364p [Zygosaccharomyces rouxii]
Length = 335
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 111/261 (42%), Gaps = 54/261 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV----VDRILYSRDCTCVDFCSECSVE 56
+A ++V N++V+ DE +A RIGL+PL D VD L + F E ++
Sbjct: 78 VATEYVYFLNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDHSLPEEE----KFTDENTIV 133
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGE------------TD 102
TL+VKC TR+ A TD +++ S RD G TD
Sbjct: 134 MTLNVKC----TRN-PDAPKDCTDPKILYRNSHIYARDLKFEPQGSQVETFAKCPVIPTD 188
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL--------- 152
DIL+ KLR GQE+ LRA+ G G +HAK++P A + P +R +
Sbjct: 189 PDILLAKLRPGQEISLRAHCILGVGSDHAKFSPVATASYRLLPHIDIREPIKGELAQKFQ 248
Query: 153 --FPKP----DEWPKSEYSE--LDETQHEAPYNWEAKPNK---------YFFNVESAGAL 195
FP +E Y + +T E NK + FNVES GA+
Sbjct: 249 KCFPPGVIGINESTDEAYVQDARKDTVSREVLRHEEFSNKVKLGRVRDHFVFNVESTGAM 308
Query: 196 KPENIVIMGVTVLKQKLSNLQ 216
PE I V VLK K L+
Sbjct: 309 TPEEIFFKSVRVLKNKAEYLK 329
>gi|156839627|ref|XP_001643502.1| hypothetical protein Kpol_473p3 [Vanderwaltozyma polyspora DSM
70294]
gi|156114116|gb|EDO15644.1| hypothetical protein Kpol_473p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 320
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 109/254 (42%), Gaps = 41/254 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFT 58
+A +++ + N++V+ DE IA RIGLIPL D DR+ + + D F E ++ +
Sbjct: 64 VAAEYIYILNNTSVIQDEVIAQRIGLIPLKVDP--DRLTWLNNDLPEDEKFTDENTIVLS 121
Query: 59 LDVKCVD--DQTRHVT-------TADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVK 108
L+VKC D + T A + + D + P + AD DILI K
Sbjct: 122 LNVKCTRNLDAPKDCTDPSILYHNAHIYARDLKFEPQGKQEETFADSPVVSADPDILIAK 181
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPKPD 157
LR GQE+ LRA+ G G +HAK++P + P + + FP P
Sbjct: 182 LRPGQEISLRAHCILGIGADHAKFSPVCTASYRLMPKIIITEKIKGESAKRFQKCFP-PG 240
Query: 158 EWPKSEYSE---------------LDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVI 202
+E E L + + + N + FN+E+ GA+ E I +
Sbjct: 241 VIDINENDEAYVKDARKDTMTREVLRHEEFQDKVKLDRVRNHFIFNIETVGAMSAEEIFL 300
Query: 203 MGVTVLKQKLSNLQ 216
V +LK K L+
Sbjct: 301 KSVKILKNKAEYLK 314
>gi|344303022|gb|EGW33296.1| RNA polymerase III (C) subunit [Spathaspora passalidarum NRRL
Y-27907]
Length = 335
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 112/253 (44%), Gaps = 39/253 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRILYSRDCTCVDFCSECSVEFTL 59
+A + V + N++V+ DE +A RIGLIPL D +++ + ++D + + ++ +L
Sbjct: 79 VAAEAVYMFMNTSVIQDEVLAHRIGLIPLKVDPDLLSWVDKTQDENN-RYTEDNTIVLSL 137
Query: 60 DVKCVDDQTRHVTTADLK---------STDARVVPVTSRNRDADMNEYGETD-DILIVKL 109
DV C + + + K ++D + P S+ N D +IL+ KL
Sbjct: 138 DVVCTKNPNAPKNSTNAKELYRNSHVYASDLKFEPHGSQLEKFKNNPVVPADPNILLAKL 197
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPKPDE 158
R GQE+ LRA+ G G +HAK++P A + P +R + FP P
Sbjct: 198 RPGQEISLRAHCILGIGSDHAKFSPVATASYRLMPVIDIREPITGALAVNFQKCFP-PGV 256
Query: 159 WPKSEYSE---------------LDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIM 203
++ E L + + K + + FNVES GA+ PE I
Sbjct: 257 IGINDQGEAYVQDARKDTVSREVLRHEEFDGKVKLGRKRDHFIFNVESTGAMSPEEIFFK 316
Query: 204 GVTVLKQKLSNLQ 216
V VLK K+ L+
Sbjct: 317 SVRVLKNKVEYLR 329
>gi|84994468|ref|XP_951956.1| DNA-directed RNA polymerases I and III, 40 kDa polypeptide
[Theileria annulata strain Ankara]
gi|65302117|emb|CAI74224.1| DNA-directed RNA polymerases I and III, 40 kDa polypeptide,
putative [Theileria annulata]
Length = 329
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 19/156 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRILYSRDCTCVDFCSEC----SV 55
+A++ VQ+ N+ V+ DE +A R+GLIP + D ++ + S++ C C E SV
Sbjct: 71 LAVETVQIYQNTGVVQDELLAHRLGLIPFSIDPDLFNFKSSSKNNHCFADCEEINDKNSV 130
Query: 56 EFTLDVKCVD-DQTRHVTTADLKSTDARVVPVTSRNRDADMNE------YGETDDILIVK 108
F L VK DQ+ +++ + S D + VP+ S N++ + YG DILI K
Sbjct: 131 CFKLKVKYNKFDQSEYLS---IYSNDLKWVPL-SNNQEIMFKDNPPKPVYG---DILITK 183
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
L GQE+ L Y +KG GK H+KW+P + +++ P
Sbjct: 184 LGPGQEIDLNMYLEKGIGKVHSKWSPVSTAVYKFMP 219
>gi|297837401|ref|XP_002886582.1| ATRPAC42 [Arabidopsis lyrata subsp. lyrata]
gi|297332423|gb|EFH62841.1| ATRPAC42 [Arabidopsis lyrata subsp. lyrata]
Length = 376
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 121/289 (41%), Gaps = 53/289 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE +A R+GLIP+ +D + L D + ++ F L
Sbjct: 112 MAIEKVLIAYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEND----QANEKNTIVFKLH 167
Query: 61 VKCVDDQTR-HVTTADLK-----------STDARVVPVTSRNRDADMNEYGETD------ 102
VKC ++ R V T+DLK S + P T + + E
Sbjct: 168 VKCPKNRPRLKVLTSDLKWLPNGSEFLRESGGSTSKPKTYTSFSCSQDSLPEFANNPITP 227
Query: 103 ---DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW 159
DILI KL GQE+ L A+A KG GK HAKW+P + P+ +R +
Sbjct: 228 CDLDILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEV------- 280
Query: 160 PKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+ E +E P N F++E G + V +K + Q +
Sbjct: 281 -EDELAE--RLVKVCPQN--------VFDIEDMGKGRKRATVAQ-----PRKCTLCQECV 324
Query: 220 AHDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 268
D + ++ N + FN+ES G+L P+ + V +L+ K
Sbjct: 325 RDDDLVERVDLGSVR-----NHFIFNIESTGSLTPDVLFTEAVKILEAK 368
>gi|401840259|gb|EJT43153.1| RPC40-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 326
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 111/252 (44%), Gaps = 46/252 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
+A ++V N++V+ DE +A RIGL+PL D +L D + D F E ++
Sbjct: 78 VAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDP---DMLTWVDSSLPDDEKFTDENTIVL 134
Query: 58 TLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-DILIV 107
+L+VKC D A + + D + P ++ D DIL+
Sbjct: 135 SLNVKCTRNPDAPKDCTDPKELYNNAHVYARDLKFEPQGRQSTTFAACSVVPADPDILLA 194
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE-----WPKS 162
KLR GQE+ L+A+ G G +HAK++P + + P ++ ++ + + +P
Sbjct: 195 KLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQSIKGESAKRFQKCFPPG 254
Query: 163 EYSELDETQHEAPYNWEAKP-----------------------NKYFFNVESAGALKPEN 199
+D+T EA Y +A+ N + FNVESAGA+ PE
Sbjct: 255 VIG-IDDTSREA-YVKDARKDTVSREVLRYEEFADKVKLGRVRNHFIFNVESAGAMTPEE 312
Query: 200 IVIMGVTVLKQK 211
I V +LK K
Sbjct: 313 IFFKSVRILKNK 324
>gi|300175011|emb|CBK20322.2| unnamed protein product [Blastocystis hominis]
Length = 366
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 124/291 (42%), Gaps = 49/291 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV-VDRIL------YSRDCTCVDFCSEC 53
MAI V + N++V+ DE + R+GLIP+ +D D I ++R DF +
Sbjct: 74 MAISTVFMNNNTSVMQDEVLCHRLGLIPIKADANDFDYICPPGENGHNRS----DFTDKN 129
Query: 54 SVEFTLDVKCVD----DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET----DDIL 105
S++F L V C + + + + ++ + + R D+ E G+ DDI+
Sbjct: 130 SLKFNLRVTCPSLSELQKAANNRNVEYLTVYSQSLELEKLGRQLDLPE-GQIGLVHDDII 188
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
+ KL GQ + L YA KG G++HAKW+P + P S+R FPKP +E
Sbjct: 189 LTKLAPGQAIDLECYATKGVGEDHAKWSPVCTAVYRMRP--SIR---FPKPLVGEDAE-- 241
Query: 166 ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVF 225
+ P F++E G K ++ +L + + +
Sbjct: 242 ---RMKQICPMG--------VFDIEDIGGEKTLHVA-----------HDLNCTMCRECIR 279
Query: 226 YVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
N N + F+VES G + +++V + VLKQK + +L
Sbjct: 280 LPENREKVQLGVIRNDFIFSVESTGCVSAKSLVPRALEVLKQKCETIIKEL 330
>gi|363752191|ref|XP_003646312.1| hypothetical protein Ecym_4450 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889947|gb|AET39495.1| hypothetical protein Ecym_4450 [Eremothecium cymbalariae
DBVPG#7215]
Length = 334
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 106/255 (41%), Gaps = 43/255 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV----VDRILYSRDCTCVDFCSECSVE 56
+A ++V N++V+ DE +A RIGL+PL D VD+ L + F E +V
Sbjct: 78 VAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDKSLPEAE----RFTDENTVV 133
Query: 57 FTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-DILI 106
+L+VKC D A + S D + P + + TD DIL+
Sbjct: 134 MSLNVKCTANPDAPKGSTDPKELYNNAHIYSRDLKFEPQGKQLDSFAKHPVLPTDPDILL 193
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FP- 154
KLR GQE+ LR + G G +HAK++P + P + T+ FP
Sbjct: 194 AKLRPGQEISLRVHCILGVGGDHAKFSPVCTASYRLMPHIDILETIQGEDATKFVKCFPP 253
Query: 155 -------KPDEWPKSEYSE------LDETQHEAPYNWEAKPNKYFFNVESAGALKPENIV 201
K + + K + L + E + + FNVES GA+ PE I
Sbjct: 254 GVAAIDEKGEAYIKDARKDTVSREVLRHPEFEGKVKLGRVKDHFIFNVESTGAMTPEEIF 313
Query: 202 IMGVTVLKQKLSNLQ 216
V +LK K L+
Sbjct: 314 FKSVRILKNKAEYLK 328
>gi|427788233|gb|JAA59568.1| Putative rna polymerase i and iii subunit [Rhipicephalus
pulchellus]
Length = 344
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 110/260 (42%), Gaps = 43/260 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA D V L N+ ++ DE +A RIGL+P D R+ R+ D E +VEF L
Sbjct: 84 MAPDKVYLYNNTGIIQDEVLAHRIGLVPFNIDP---RMFEYRESES-DGSPEDTVEFELK 139
Query: 61 VKCVDD--QTRHVTTADLKSTDARVVP--VTSRNRDADMNEYGET------DDILIVKLR 110
VKC + + TT D D V +T + +G DDI++ KLR
Sbjct: 140 VKCTKNPQAPKDATTPDELYKDHMVYTKHLTWNPLGSQAEIFGNKPPRPVHDDIILAKLR 199
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS----E 166
GQE+ L+ + KG G+ HAK++P A + P+ + + + E + +S E
Sbjct: 200 PGQEIDLKLHCVKGTGQVHAKFSPVATASYRLLPEIRLLRPVRDEQAERLQGCFSKGVIE 259
Query: 167 LDET--QHEAPYNWEAKP-----------------------NKYFFNVESAGALKPENIV 201
LDE H+ A+ + Y F+VES GA P+ +V
Sbjct: 260 LDEEPDGHKVARVANARADTCSRNVFRFDDLKDAVELSRVKDHYIFSVESTGAYAPDTLV 319
Query: 202 IMGVTVLKQKLSNLQTQLAH 221
+ VL K +L H
Sbjct: 320 TEAIKVLMAKCQMFLDELEH 339
>gi|167387776|ref|XP_001738304.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Entamoeba
dispar SAW760]
gi|165898594|gb|EDR25427.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative
[Entamoeba dispar SAW760]
Length = 291
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 106/254 (41%), Gaps = 41/254 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V LE NS+ + DE + R+GLIP+ +D + + +D D E ++ FTLD
Sbjct: 43 MAIEMVVLEDNSSAIPDEMLCHRLGLIPILADP--RKFKFPKDRHFTDPTEEDTIVFTLD 100
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRA 119
V C D ++ + S+D P + AD DDILI +L+ Q ++ +
Sbjct: 101 VTCTLDSAKNPVNNKVYSSDLIWEPQGEQETTFADCPIKPVFDDILIAELQPHQHIKCKL 160
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDP---------------DNSMRHTLFPKPD------- 157
+ KG G++HAK++P + P N +F D
Sbjct: 161 FCCKGIGQDHAKFSPVCPATYRLMPKITVIKQNKKMSKEIKNCCPLNVFDIEDGELIVKN 220
Query: 158 --------EWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLK 209
E + E SE + E N Y F+VES G + I V ++K
Sbjct: 221 PRNCKMCRECIREERSEYIKLGREE--------NHYLFSVESTGIYPAKEIFSEAVKIMK 272
Query: 210 QKLSNLQTQLAHDR 223
K L T+L + +
Sbjct: 273 SKAEKLVTELENRK 286
>gi|367001448|ref|XP_003685459.1| hypothetical protein TPHA_0D03920 [Tetrapisispora phaffii CBS 4417]
gi|357523757|emb|CCE63025.1| hypothetical protein TPHA_0D03920 [Tetrapisispora phaffii CBS 4417]
Length = 335
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 113/262 (43%), Gaps = 57/262 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
+A ++V N++V+ DE +A RIGLIPL D D++ + D D F E ++
Sbjct: 78 VAAEYVYFMNNTSVIQDEVLAHRIGLIPLRVDP--DKLSWI-DSELPDEEKFTDENTIVI 134
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRN-----RDADMNEYGET----------- 101
TLD KC TR+ A +TD +V+ RN RD G+
Sbjct: 135 TLDAKC----TRN-PDAPKDATDPKVL---YRNAHVYARDLKFEPQGKQAELFADQPVEA 186
Query: 102 --DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL------- 152
DILI KLR GQE+ LRA+ G G +HAK++P A + P ++ +
Sbjct: 187 IDPDILIAKLRPGQEISLRAHCILGIGGDHAKFSPVATASYRLLPHINITSPISGESAKR 246
Query: 153 ----FP--------KPDEWPKSEYSE------LDETQHEAPYNWEAKPNKYFFNVESAGA 194
FP K + + K + L + + + + FNVES GA
Sbjct: 247 FQKCFPSGVIGINDKDEAFVKDARKDTVSREVLRHEEFQNKVKLGRVRDHFVFNVESTGA 306
Query: 195 LKPENIVIMGVTVLKQKLSNLQ 216
+ PE I V +LK K L+
Sbjct: 307 MTPEEIFFKSVRILKNKAEYLK 328
>gi|408404989|ref|YP_006862972.1| DNA-directed RNA polymerase subunit D, partial [Candidatus
Nitrososphaera gargensis Ga9.2]
gi|408365585|gb|AFU59315.1| DNA-directed RNA polymerase subunit D [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 163
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 19/135 (14%)
Query: 15 LSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF--CSECSVEFTLDVKCVDDQTRHVT 72
+ DE +A R+GLIPL +D R + +C C CS+C V LD + ++T VT
Sbjct: 1 MHDEAVAHRLGLIPLRTDP--GRFVMPHECDCKSTLGCSKCRVLLVLDAE-ASEKTLVVT 57
Query: 73 TADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKW 132
+ +L S D V PV+ DI I+ L Q+L+ AYA+ G GK+HAKW
Sbjct: 58 SGELVSEDEMVKPVSK--------------DIPIIVLAPNQKLKFEAYARLGTGKDHAKW 103
Query: 133 NPTAGVCFEYDPDNS 147
PT+ + D S
Sbjct: 104 QPTSAAIVKDGKDES 118
>gi|392560708|gb|EIW53890.1| insert subdomain of RNA polymerase alpha subunit [Trametes
versicolor FP-101664 SS1]
Length = 366
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 5/145 (3%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++V+ DE +A R+GLIPL VD L+S ++ F LD
Sbjct: 93 IAIEDVFVWNNTSVIHDEILAQRLGLIPLN----VDPALFSPRLPGDIPYDRNTLVFQLD 148
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRA 119
++C + + S D + VP + D+ DI+I KLR GQ + +
Sbjct: 149 IECSRGAKGAIINEYVTSGDLKWVPQGEQESVFGDLVPTATNKDIVIAKLRPGQVINVEL 208
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDP 144
+A KG GKEHAKW+P A + P
Sbjct: 209 HAIKGVGKEHAKWSPVATATYRLHP 233
>gi|448510710|ref|XP_003866410.1| Rpc40 RNA polymerase [Candida orthopsilosis Co 90-125]
gi|380350748|emb|CCG20970.1| Rpc40 RNA polymerase [Candida orthopsilosis Co 90-125]
Length = 336
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 111/255 (43%), Gaps = 43/255 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV----VDRILYSRDCTCVDFCSECSVE 56
+A++ V N++V+ DE +A RIGLIPL D VD+ + D + + ++
Sbjct: 80 VAVETVYSFMNTSVIQDEVLAHRIGLIPLKVDPDSLTWVDKTVDEND----RYTEDNTIV 135
Query: 57 FTLDVKCVDDQ---------TRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-DILI 106
+LDV C + + +++ + D + P S+ N TD +IL+
Sbjct: 136 LSLDVTCTKNPHAPKNSTNPSELYRNSNVYAKDLKFEPQGSQLEKYKDNPVVPTDPNILL 195
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPK 155
KLR GQE+ LRA+ G G +HAK++P A + P ++ + FP
Sbjct: 196 AKLRPGQEISLRAHCILGIGADHAKFSPVATASYRLLPVIDIKEPITGELAKKFQKCFPS 255
Query: 156 P--DEWPKSEYSELD--------ETQHEAPYNWEAKPNK----YFFNVESAGALKPENIV 201
+ PK E D E +N + K + + F VES GA+ PE I
Sbjct: 256 GVIEIDPKGEAYVADARKDTVSREVLRHPEFNGKVKLGRQRDYFIFQVESTGAMSPEEIF 315
Query: 202 IMGVTVLKQKLSNLQ 216
V VLK K L+
Sbjct: 316 FKSVRVLKNKAEYLR 330
>gi|119719198|ref|YP_919693.1| RNA polymerase, insert [Thermofilum pendens Hrk 5]
gi|119524318|gb|ABL77690.1| DNA-directed RNA polymerase, subunit D [Thermofilum pendens Hrk 5]
Length = 283
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 109/248 (43%), Gaps = 40/248 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVD--RILYSRDCTCVDFCSECSVEF 57
+AID V + N++ L DE IA R+ L+PL D E D R LY + + V F
Sbjct: 35 LAIDEVIVTENTSALWDEMIAHRLALVPLKIDPETYDALRDLYEQG-------KDPQVIF 87
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
+L+ + ++ R V + L+ P+ + + + +I I+KL KGQ++ L
Sbjct: 88 SLEEEA-GERPRTVLSGHLRFEGIEGAPLPPESAGIE----PVSKNIPILKLGKGQKISL 142
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW------PKSEYSELD--- 168
A A+ G G++HAKW P V ++Y P + P+ + P+ + +D
Sbjct: 143 TAIARMGTGRQHAKWQPVGPVGYKYKPVVRILREDLPEDEALKIISTCPRRVFGYVDGKL 202
Query: 169 --------------ETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSN 214
E + + P+ VES G L PE ++ + VL +KL N
Sbjct: 203 TVINEMQCSLCRECEEKFPGIVEVDGDPSNIILTVESIGCLPPEKLLAVAADVLSKKLDN 262
Query: 215 L--QTQLA 220
+ QLA
Sbjct: 263 FLEKVQLA 270
>gi|6325367|ref|NP_015435.1| Rpc40p [Saccharomyces cerevisiae S288c]
gi|133369|sp|P07703.1|RPAC1_YEAST RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=RNA polymerases I and III subunit AC1; AltName:
Full=C37; AltName: Full=DNA-directed RNA polymerases I
and III 40 kDa polypeptide; Short=AC40; Short=C40
gi|172474|gb|AAA34999.1| RNA polymerase C-40 [Saccharomyces cerevisiae]
gi|914981|gb|AAB68080.1| Rpc40p: RNA Polymerases I and III 40 kD subunit (Swiss Prot.
accession number P07703) [Saccharomyces cerevisiae]
gi|151942887|gb|EDN61233.1| AC40 [Saccharomyces cerevisiae YJM789]
gi|256269060|gb|EEU04397.1| Rpc40p [Saccharomyces cerevisiae JAY291]
gi|285815633|tpg|DAA11525.1| TPA: Rpc40p [Saccharomyces cerevisiae S288c]
gi|323306842|gb|EGA60127.1| Rpc40p [Saccharomyces cerevisiae FostersO]
gi|349581913|dbj|GAA27070.1| K7_Rpc40p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296113|gb|EIW07216.1| Rpc40p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 335
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 107/255 (41%), Gaps = 42/255 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
+A ++V N++V+ DE +A RIGL+PL D +L D D F E ++
Sbjct: 78 VAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDP---DMLTWVDSNLPDDEKFTDENTIVL 134
Query: 58 TLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIV 107
+L+VKC D A + + D + P ++ AD DIL+
Sbjct: 135 SLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLA 194
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPKP 156
KLR GQE+ L+A+ G G +HAK++P + + P ++ + FP
Sbjct: 195 KLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFPPG 254
Query: 157 ----DEWPKSEY---SELDETQHEAPYNWEAKP--------NKYFFNVESAGALKPENIV 201
DE Y + D E E N + FNVESAGA+ PE I
Sbjct: 255 VIGIDEGSDEAYVKDARKDTVSREVLRYEEFADKVKLGRVRNHFIFNVESAGAMTPEEIF 314
Query: 202 IMGVTVLKQKLSNLQ 216
V +LK K L+
Sbjct: 315 FKSVRILKNKAEYLK 329
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 240 NKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 273
N + FNVESAGA+ PE I V +LK K L+
Sbjct: 296 NHFIFNVESAGAMTPEEIFFKSVRILKNKAEYLK 329
>gi|308806201|ref|XP_003080412.1| RNA polymerase subunit (ISS) [Ostreococcus tauri]
gi|116058872|emb|CAL54579.1| RNA polymerase subunit (ISS) [Ostreococcus tauri]
Length = 382
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 125/299 (41%), Gaps = 48/299 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTL 59
MAI+ V + N++V+ DE A R+GL+P+ +D R Y D +E ++ +L
Sbjct: 109 MAIEKVYMINNTSVVPDEVFAHRLGLVPIKADPA--RFEYRGP---NDLANETNTIVLSL 163
Query: 60 DVKC----VDDQT------RHVTTADLK-STDARVVPVTSRNRDADMNE-----YGET-- 101
+C +DD + R V + L+ D +P R + +D +GE
Sbjct: 164 HARCHRERLDDGSLGEVVNRSVYSNALQWCPDGSQLPEEERAKYSDFKRSQRESFGEEEL 223
Query: 102 ----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD 157
DDIL+VKL GQE+ L + KG G+EH+KW+P + P+ ++ +
Sbjct: 224 GCVHDDILLVKLAPGQEIELECHCVKGIGQEHSKWSPVGTCWYRMVPEITILEPITGADA 283
Query: 158 EWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT 217
+ + ++T A Y E K +K V + G + +++ L
Sbjct: 284 DVFMERCANFNDTH--ACYACEGKGDKKTVKV----------VETRGCDLCVERVRELTG 331
Query: 218 QLAHDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ D V N + F +ES G +KP I V +L K N+ + L
Sbjct: 332 EPGWDEKIAV--------RKHKNHFIFTIESVGQMKPGTIFKEAVKILASKCQNVLSTL 382
>gi|45187904|ref|NP_984127.1| ADR031Cp [Ashbya gossypii ATCC 10895]
gi|44982688|gb|AAS51951.1| ADR031Cp [Ashbya gossypii ATCC 10895]
gi|374107343|gb|AEY96251.1| FADR031Cp [Ashbya gossypii FDAG1]
Length = 364
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 107/264 (40%), Gaps = 61/264 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV----VDRILYSRDCTCVDFCSECSVE 56
+A ++V N++V+ DE +A RIGL+PL D VD+ L + F E +V
Sbjct: 108 VAPEYVYFFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDKSLPEAE----RFTDENTVV 163
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRN-----RDADMNEYGET---------- 101
+L+VKC H A STD + + RN RD G+
Sbjct: 164 LSLNVKCT-----HNPDAPKGSTDPKEL---YRNAHIYARDLKFEPQGKQLETFAKCPVV 215
Query: 102 ---DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEY-----------DPDNS 147
DIL+ KLR GQE+ LR + G G +HAK++P A + PD
Sbjct: 216 PADPDILLAKLRPGQEISLRVHCILGIGSDHAKFSPVATASYRLMPYINIVEPITGPDAE 275
Query: 148 MRHTLFPKPDEWPKSEYSE---------------LDETQHEAPYNWEAKPNKYFFNVESA 192
FP P +E E L + E + + FNVESA
Sbjct: 276 KFVKCFP-PGVAAINEKGEAFVQDARKDTVSREVLRHPELEQKVKLGRVRDHFIFNVESA 334
Query: 193 GALKPENIVIMGVTVLKQKLSNLQ 216
GA+ PE I V +LK K L+
Sbjct: 335 GAMTPEEIFFKSVRILKNKAEYLK 358
>gi|301095579|ref|XP_002896889.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Phytophthora infestans T30-4]
gi|262108536|gb|EEY66588.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Phytophthora infestans T30-4]
Length = 304
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 121/272 (44%), Gaps = 55/272 (20%)
Query: 3 IDWVQLEANSTVLSDEFIASRIGLIPL-TSDEVVDRILYSRDCTCVDFCSECSVEFTLDV 61
I V + NS+++ DE +A R+GLIPL +DE + I++ D TC D
Sbjct: 53 IGHVYIWNNSSIIQDEVLAHRLGLIPLNATDE--NTIVFKLDVTC-----------KFDP 99
Query: 62 KCVDDQTRHVTTADLKSTDARVVPVTSRN-RDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ D T+ + ++ + S D VP ++ R + E DIL+ KLR GQ + L A+
Sbjct: 100 EHPKDPTKAIHSS-VYSRDLEWVPQGNQEERFGSIRPVHE--DILMAKLRPGQSIALEAH 156
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
+KG GK+HAK++P A + L PK + K E ++ E
Sbjct: 157 CRKGVGKDHAKFSPVATASYR----------LMPKVELMEKVEGTDAKRLVEECHIG--- 203
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNWEAKPN 240
F++E G + P +V + Q A I E +N + +
Sbjct: 204 -----LFDIEDIGGV-PTAVV--------------KDQRACTMCRNCIREPSWNEKIRLG 243
Query: 241 K----YFFNVESAGALKPENIVIMGVTVLKQK 268
+ + F+VES G +KPE +++ + VL +K
Sbjct: 244 RQSDHFIFSVESVGMIKPEELLLEALNVLAEK 275
>gi|253744264|gb|EET00492.1| DNA-directed RNA polymerase RPB3 [Giardia intestinalis ATCC 50581]
Length = 326
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 116/268 (43%), Gaps = 27/268 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC-----TCVDFCSECSV 55
+AID V+ NST L++EFIA R+GLIPL + + I Y C T ++ C EC+
Sbjct: 41 LAIDIVKFLDNSTTLTEEFIAHRLGLIPLRTAGPLSAISYWYTCDEEHSTEIE-CRECTF 99
Query: 56 EFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQEL 115
+ TL+V + R VT D+K + T N + E I I+KL G+ +
Sbjct: 100 KGTLNVSNDTTKIRVVTDKDIKFDHGGI--STLSNYMGSLLGVIEAPSIPILKLAPGESI 157
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAP 175
YA+K GK HAKW P A V L P E+ +L + ++
Sbjct: 158 NALLYARKDRGKIHAKWCPAACV------------VLRPLAKIILCDEFEKLPQQHNDIA 205
Query: 176 YNW--EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPY 233
++ + P K F +K N I +S + +++ P
Sbjct: 206 RSYISDTCPRKVFTIENRRVVVKDPNNCIFCNDCFNIPISLDGQNTDANTIWH-----PA 260
Query: 234 NWEAKPNKYFFNVESAGALKPENIVIMG 261
+P+ ++F++ES G+L +I +M
Sbjct: 261 LVTQQPDAFYFSIESNGSLSAYDIFLMA 288
>gi|401623159|gb|EJS41266.1| rpc40p [Saccharomyces arboricola H-6]
Length = 335
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 112/264 (42%), Gaps = 60/264 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
+A ++V N++V+ DE +A RIGL+PL D +L D D F E +V
Sbjct: 78 VAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDP---DMLTWVDSNLPDDEKFTDENTVVL 134
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGETD------------- 102
+L+VKC TR+ A STD R + + RD G
Sbjct: 135 SLNVKC----TRN-PDAPKGSTDPRELYNNAHVYARDLKFEPQGRQSTTFANCPVVPADP 189
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKS 162
DIL+ KLR GQE+ L+A+ G G +HAK++P + + P ++ L P E K
Sbjct: 190 DILLAKLRPGQEILLKAHCILGIGGDHAKFSPVSTASYRLLPQINI---LKPIKGEAAKR 246
Query: 163 -------EYSELDETQHEAPYNWEAKP-----------------------NKYFFNVESA 192
+DE EA Y +A+ N + FNVESA
Sbjct: 247 FQKCFPPGVIGIDENSDEA-YVEDARKDTVSREVLRYEEFADKVKLGRVRNHFIFNVESA 305
Query: 193 GALKPENIVIMGVTVLKQKLSNLQ 216
GA+ PE I V +LK K L+
Sbjct: 306 GAMTPEEIFFKSVRILKNKAEYLK 329
Score = 37.4 bits (85), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 240 NKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 273
N + FNVESAGA+ PE I V +LK K L+
Sbjct: 296 NHFIFNVESAGAMTPEEIFFKSVRILKNKAEYLK 329
>gi|213513431|ref|NP_001134298.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Salmo salar]
gi|209732188|gb|ACI66963.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Salmo salar]
Length = 353
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 41/257 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++ L
Sbjct: 94 MAVEKVLIYNNTSIIQDEILAHRLGLIPIKADP---RLFEYRNAGDEEGTEIDTIQLQLK 150
Query: 61 VKCVDDQTRHVTTADLK---------STDARVVPVTSR-NRDADMNEYGETDDILIVKLR 110
+KC + +AD + S D + P+ ++ + AD N DIL+ +LR
Sbjct: 151 IKCTRNPRATKDSADPRELYLNHMVYSKDMKWAPIGNQADVFADANIGPVHGDILLAQLR 210
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEY------ 164
GQEL + + KG G++HAK++P A + P+ ++ T+ + E K +
Sbjct: 211 PGQELDIVMHCVKGIGQDHAKFSPVATASYRLLPEITLMETVEGEKAERLKRCFSPGVIE 270
Query: 165 --------------SELDETQHEAPYNWEAK--------PNKYFFNVESAGALKPENIVI 202
S LD E + + K + + F+VES G L P+ +V
Sbjct: 271 VENHGGKVVAKVVNSRLDTCSREVLRHDDLKNAVKLARVRDHFIFSVESTGILAPDVLVT 330
Query: 203 MGVTVLKQKLSNLQTQL 219
+ VL K +L
Sbjct: 331 EAIKVLMTKCQRFLNEL 347
>gi|327262314|ref|XP_003215970.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Anolis carolinensis]
Length = 344
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 130/288 (45%), Gaps = 48/288 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTL 59
MA++ V + N++++ DE +A R+GLIP+ +D R+ + + D C E +++F L
Sbjct: 87 MAVEKVFVYNNTSIVQDEILAHRLGLIPICADP---RLFEYK--SEEDECDEINTLQFQL 141
Query: 60 DVKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNRDADMNEYGETDDILIVKLR 110
+KC + ++D + S VP+ S+ + + DDILI +LR
Sbjct: 142 KIKCSRNPEAPKESSDPNELYINHKVYSKHMEWVPLGSQADNMNAGFRPVHDDILIAQLR 201
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDET 170
GQE+ + + KG GK+HAK++P A + PD ++ KP E +E
Sbjct: 202 PGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLL-----KPVEGETAE------- 249
Query: 171 QHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVT-VLKQKLSNLQTQL-AHDRVFYVI 228
K K F S+G ++ E I V V +L ++ HD + ++
Sbjct: 250 ----------KLKKCF----SSGVIEVEEIKGKKVARVANARLDTFSREIFRHDDLKNLV 295
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
A + Y F+VES G L P+ +V + +L K + +L
Sbjct: 296 RLARVR-----DHYIFSVESTGVLPPDVLVSEAIKILIGKCQHFLEEL 338
>gi|194860382|ref|XP_001969570.1| GG23887 [Drosophila erecta]
gi|190661437|gb|EDV58629.1| GG23887 [Drosophila erecta]
Length = 117
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 40/43 (93%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD 43
+AIDWVQLEANSTVLSDEF+A RIGLIPL SD+VV+R+ Y+RD
Sbjct: 45 LAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRD 87
>gi|18312091|ref|NP_558758.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum
aerophilum str. IM2]
gi|20978701|sp|Q8ZYQ3.1|RPOD_PYRAE RecName: Full=DNA-directed RNA polymerase subunit D
gi|18159521|gb|AAL62940.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum
aerophilum str. IM2]
Length = 260
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 103/234 (44%), Gaps = 38/234 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC-TCVDFCSECSVEFTL 59
MAID V + N++V+ DE +A R+GLIPLT+ + + DC + + SECS TL
Sbjct: 40 MAIDNVVVVNNTSVMYDEMLAHRLGLIPLTTP--LQSLPPYEDCVSGLADPSECSTRLTL 97
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V D T + + DL S VVPV DI IVKL KGQ + L A
Sbjct: 98 QVTAEGDTT--IYSGDLASDRPDVVPVYK--------------DIPIVKLVKGQSIVLEA 141
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYN-- 177
YAK G K+HAKW A + Y P ++ E K +L E E +N
Sbjct: 142 YAKLGVAKDHAKWQ-AATASYYYYPKVVVKSE---NCREMCKEICRQL-ENPIECSFNKA 196
Query: 178 WEAK------------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
W K NKY F VES G + +LK+K + +L
Sbjct: 197 WTCKDLCKEGLEVTWDKNKYVFWVESFGNYDVNTALREAFRILKRKFAVFAEEL 250
>gi|254574330|ref|XP_002494274.1| RNA polymerase subunit, common to RNA polymerase I and III
[Komagataella pastoris GS115]
gi|238034073|emb|CAY72095.1| RNA polymerase subunit, common to RNA polymerase I and III
[Komagataella pastoris GS115]
gi|328353904|emb|CCA40301.1| DNA-directed RNA Polymerase III subunit C5 [Komagataella pastoris
CBS 7435]
Length = 335
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 107/254 (42%), Gaps = 42/254 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD----EVVDRILYSRDCTCVDFCSECSVE 56
++++ V + NS+V+ DE +ASRIGL+PL D VDR + + F E +V
Sbjct: 78 VSVEHVYINNNSSVIQDEVLASRIGLVPLQIDPDRLSWVDRGVEESE----RFTDENTVV 133
Query: 57 FTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILI 106
+L+V C +D + + S D + P + AD DI+I
Sbjct: 134 ISLNVACTKNPHPAKNNNDPENLYRNSIVYSRDLKFEPQGRQVETFADSPVVAADPDIVI 193
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE-----WPK 161
KLR GQE+ L+A+ G G +HAK++P + P ++ + K E +PK
Sbjct: 194 AKLRPGQEISLKAHCILGLGSDHAKFSPVCTASYRLLPVINITQPITGKDAEKFQKCFPK 253
Query: 162 SEYSE-------------------LDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVI 202
+ L + E + + + FNVES G + PE I
Sbjct: 254 GVIAIENGQAVVKDARRDTVSRECLRHPEFEGKVKLARQRDHFIFNVESTGCMPPEEIFF 313
Query: 203 MGVTVLKQKLSNLQ 216
V +LK K L+
Sbjct: 314 KSVRILKNKAEYLK 327
>gi|323350237|gb|EGA84384.1| Rpc40p [Saccharomyces cerevisiae VL3]
Length = 265
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 107/255 (41%), Gaps = 42/255 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
+A ++V N++V+ DE +A RIGL+PL D +L D D F E ++
Sbjct: 8 VAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDP---DMLTWVDSNLPDDEKFTDENTIVL 64
Query: 58 TLDVKCVDDQTRHVTTADLKS------TDARVVPVTSRNRD----ADMNEYGETDDILIV 107
+L+VKC + + D K AR + + R AD DIL+
Sbjct: 65 SLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLA 124
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPKP 156
KLR GQE+ L+A+ G G +HAK++P + + P ++ + FP
Sbjct: 125 KLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFPPG 184
Query: 157 ----DEWPKSEY---SELDETQHEAPYNWEAKP--------NKYFFNVESAGALKPENIV 201
DE Y + D E E N + FNVES+GA+ PE I
Sbjct: 185 VIGIDEGSDEAYVKDARKDTVSREVLRYEEFADKVKLGRVRNHFIFNVESSGAMTPEEIF 244
Query: 202 IMGVTVLKQKLSNLQ 216
V +LK K L+
Sbjct: 245 FKSVRILKNKAEYLK 259
>gi|363807500|ref|NP_001242652.1| uncharacterized protein LOC100786622 [Glycine max]
gi|255637183|gb|ACU18922.1| unknown [Glycine max]
Length = 388
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 129/309 (41%), Gaps = 71/309 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE ++ R+GLIP+ +D R+ + D + ++ F L
Sbjct: 119 MAIERVYIANNTSVVQDEVLSHRLGLIPIRADP---RLFEYPENAGDDKNEKNTIVFKLH 175
Query: 61 VKCVDDQTRHVTTAD-LK---------------STDARVVPVTSRNRDADM------NEY 98
V+C Q R +D LK + ++ TS D N
Sbjct: 176 VRCQVGQPRITVKSDKLKWLPNGSELPCEGVKPNAGSKPKTFTSFTCSQDSLPEFSNNSI 235
Query: 99 GET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD 157
G T DI++ KL GQE+ L A+A KG GK HAKW+P A + P+ + +
Sbjct: 236 GLTYSDIILAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLLEAV----- 290
Query: 158 EWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT 217
+ E +E E +++ P N F++E G K +
Sbjct: 291 ---EDELAE--ELKNKCPVN--------VFDIEDIGKGK------------------RRA 319
Query: 218 QLAHDRVFYVINE---APYNWEAK------PNKYFFNVESAGALKPENIVIMGVTVLKQK 268
++A R + E WE + N + F +ES GAL PE + V +L+ K
Sbjct: 320 KVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTEAVKILEDK 379
Query: 269 LSNLQTQLA 277
+ T+L+
Sbjct: 380 CERVITELS 388
>gi|332157864|ref|YP_004423143.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. NA2]
gi|331033327|gb|AEC51139.1| DNA-directed RNA polymerase subunit D [Pyrococcus sp. NA2]
Length = 259
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 105/248 (42%), Gaps = 62/248 (25%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+ +IPL + VDR + D +D ++T+
Sbjct: 40 FAVDEVEFYENDSALFDEIIAHRLAMIPLKTP--VDR--FELDALELD-------DYTVT 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DL+S D V PV +I IVKL KGQ+L AY
Sbjct: 89 LSLKAEGPGIVYSGDLESDDPDVKPVNP--------------NIPIVKLAKGQKLVFNAY 134
Query: 121 AKKGFGKEHAKWNP----------------------------TAGVCFEYDPDNSMRHTL 152
A+ G GK+HAKW P G+ E + + + T+
Sbjct: 135 ARLGRGKDHAKWQPGFTYYKYYTKIHISKKIEGWEKLKKLAKKRGLPVEENDNEIIVETI 194
Query: 153 FPKPDEWPKSEYSELDETQHEAPYNW-EAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 211
KP PK E+ E +E W E PN Y F VES G L E IV + + +L +K
Sbjct: 195 --KPFYIPK-EFEE-----YEGKEIWEEIVPNSYVFVVESNGELPVEEIVKIALKILMRK 246
Query: 212 LSNLQTQL 219
+L
Sbjct: 247 ADRFINEL 254
>gi|435852104|ref|YP_007313690.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanomethylovorans hollandica DSM 15978]
gi|433662734|gb|AGB50160.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Methanomethylovorans hollandica DSM 15978]
Length = 264
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 22/142 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI V + N++VL DE + R+ LIPLTS+ ++ + +C+C DFC C V TL
Sbjct: 41 IAITEVNIYNNTSVLYDEQLGLRMALIPLTSN--MEDFVPKEECSCGDFCPACQVSLTLS 98
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DL S+D +V P AD N I I LR+GQ++ L A
Sbjct: 99 A----EGPKIVYSQDLVSSDDKVQP-------ADPN-------IPIADLREGQKIVLEAI 140
Query: 121 AKKGFGKEHAKWNPTAGVCFEY 142
A G+G +H++W AGV Y
Sbjct: 141 AHMGYGNKHSRWQ--AGVACGY 160
>gi|42571933|ref|NP_974057.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332195617|gb|AEE33738.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 302
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 27/167 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE +A R+GLIP+ +D + L D + ++ F L
Sbjct: 112 MAIEKVLIAYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHDQAN----EKNTIVFKLH 167
Query: 61 VKCVDDQTR-HVTTADLK---------------STDARVVPVTSRNRDADMNEYGETD-- 102
VKC ++ R V T+DLK ++ + S ++D+ + E+
Sbjct: 168 VKCPKNRPRLKVLTSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDS-LPEFANNPIT 226
Query: 103 ----DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DILI KL GQE+ L A+A KG GK HAKW+P + P+
Sbjct: 227 PCDLDILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPE 273
>gi|340722889|ref|XP_003399833.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Bombus terrestris]
Length = 505
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 28/203 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
MAI+ V + N++++ DE +A R+GLIPL +D R+ T D + ++ +
Sbjct: 80 MAIEKVYIVNNTSLIQDEVLAHRLGLIPLQADP---RLFEYPSSTIKDEDEVSDQDTLRY 136
Query: 58 TLDVKCV------DDQTR---HVTTADLKSTDARVVPVTSRNRDADMNEYGET------D 102
L V C D R +++ S D + VP+ R A++ G D
Sbjct: 137 ELKVSCTWNPQAPKDSRRTNDMYRNSNVYSKDIKWVPI---GRQAEIYPRGAEQLGVLED 193
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKS 162
DILI K+R GQE+ + +A KG GK+HAK++P A + PD + ++ + + KS
Sbjct: 194 DILICKMRPGQEIHVFMHAVKGIGKDHAKFSPVATASYRLLPDIQLVKSVRGEMADRLKS 253
Query: 163 EYS----ELDETQHEAPYNWEAK 181
+S E+ ET+ P + EAK
Sbjct: 254 CFSIGVIEVIETKPGDPESREAK 276
>gi|327311714|ref|YP_004338611.1| RNA polymerase, insert [Thermoproteus uzoniensis 768-20]
gi|326948193|gb|AEA13299.1| RNA polymerase, insert [Thermoproteus uzoniensis 768-20]
Length = 279
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 74/143 (51%), Gaps = 21/143 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC-TCVDFCSECSVEFTL 59
AID V + N++ + DE +A R+GLIPLT+ +D +C T + +EC+V FTL
Sbjct: 40 FAIDQVLIVNNTSSMYDEMLAHRLGLIPLTTP--LDLFPKIEECETGMVDPAECTVRFTL 97
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V D +T V + DL S V PV DI IVKL KGQ + L A
Sbjct: 98 QVTADDAKT--VYSGDLVSDHPDVKPVYP--------------DIPIVKLVKGQSISLEA 141
Query: 120 YAKKGFGKEHAKWNPTAGVCFEY 142
YA+ G KEHAKW AG+ Y
Sbjct: 142 YARLGRAKEHAKWQ--AGLATYY 162
>gi|126310054|ref|XP_001362696.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Monodelphis domestica]
Length = 346
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 112/260 (43%), Gaps = 47/260 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ D +++F L
Sbjct: 87 MAVEKVFVYNNTSIVQDEILAHRLGLIPIRADP---RLFEYRNQGDEDGTEIDTLQFQLK 143
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNRDADMNEYGET----DDILIV 107
VKC + ++D + + +P+ ++ AD+ G DDILI
Sbjct: 144 VKCTRNPQAAKDSSDPNELYLNHKVYTKHMTWIPLGNQ---ADVFPEGTIRPVHDDILIA 200
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS-- 165
+LR GQEL L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 201 QLRPGQELDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPIEGEAAEELSQCFSPG 260
Query: 166 ------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKPEN 199
LD E + K + Y F+VES G L PE
Sbjct: 261 VIQVQDVKGKKVATVANPRLDTFSREIFRHENLKKLVRLARVRDHYIFSVESTGVLPPEV 320
Query: 200 IVIMGVTVLKQKLSNLQTQL 219
+V + VL K +L
Sbjct: 321 LVSEAIKVLMGKCRRFMDEL 340
>gi|41056007|ref|NP_956860.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Danio rerio]
gi|34193909|gb|AAH56581.1| Polymerase (RNA) I polypeptide C [Danio rerio]
Length = 347
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 127/290 (43%), Gaps = 50/290 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GL+P+ +D R+ R+ + +++ L
Sbjct: 88 MAIEKVFIYNNTSIIQDEILAHRLGLVPIKADP---RLFEYRNSEDQEGTEIDTIQLQLK 144
Query: 61 VKCVDDQTRHVTTADLK---------STDARVVPVTSR-NRDADMNEYGETDDILIVKLR 110
VKC + ++D K S D + +P+ ++ + AD DIL+ ++R
Sbjct: 145 VKCTRNPRAPKDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADAKIGPVHGDILLAQVR 204
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDET 170
GQEL + + KG GK+HAK++P A + P+ ++ T+ + E K +S
Sbjct: 205 PGQELDIVMHCVKGIGKDHAKFSPVATASYRLLPEITLLQTIEGEQAERLKRCFS----- 259
Query: 171 QHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT----QLAHDRVFY 226
G ++ EN+ G V K S L T L HD +
Sbjct: 260 ---------------------PGVIELENV--NGRKVAKVVNSRLDTCSREVLRHDDLKS 296
Query: 227 VINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
++ + + F+VES G L P+ +V + VL K T+L
Sbjct: 297 LVKLGRVR-----DHFIFSVESTGILPPDVLVTEAINVLMSKCQKFLTEL 341
>gi|410959240|ref|XP_003986220.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Felis catus]
Length = 346
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 112/262 (42%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD------------NSMRHTLF 153
I +LR GQE+ L + KG GK+HAK++P A + PD +R
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAAEELRRCFS 258
Query: 154 PKPDEWPKSEYSE--------LDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
P E + + + LD E N + K + Y F+VES G L P
Sbjct: 259 PGVIEVQEVQGKKVARVANPRLDTFSREVFRNEKLKKVVRLARVRDHYIFSVESTGVLPP 318
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
E +V + VL K +L
Sbjct: 319 EVLVSEAIKVLMGKCQRFLDEL 340
>gi|340053034|emb|CCC47320.1| putative DNA-directed RNA polymerase II subunit 3 [Trypanosoma
vivax Y486]
Length = 337
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTL 59
+ + V + N++VL DE +A RIGL+PL S + ++ + DC C C EC V L
Sbjct: 45 LGAESVTIIKNTSVLPDEMLAHRIGLVPLYSMKA-RKMPFPTDCLCGGGGCVECQVTGLL 103
Query: 60 DVKCVDDQ-TRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
V+C DQ + V T LK D V PV+S R + ++ L + QEL LR
Sbjct: 104 TVRCPADQHSLQVFTDSLKIDDEEVYPVSSEERG-----------LWLLTLGRSQELDLR 152
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPD 145
+K K HAK+ P + V Y D
Sbjct: 153 IVIRKSIAKTHAKFMPVSTVAMRYATD 179
>gi|282164928|ref|YP_003357313.1| DNA-directed RNA polymerase subunit D [Methanocella paludicola
SANAE]
gi|282157242|dbj|BAI62330.1| DNA-directed RNA polymerase subunit D [Methanocella paludicola
SANAE]
Length = 262
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 21/145 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV-DFCSECSVEFTL 59
MAID+V + N++V+ DE +A R+GLIP+ ++ +D +C C + C+ C V FTL
Sbjct: 39 MAIDYVDIYDNTSVMFDEMLAHRMGLIPIKTN--LDMYKLREECDCKGEGCALCQVSFTL 96
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+ V + D+KS+D VP AD D++ I++L++ Q++ L A
Sbjct: 97 SA----EGPCMVHSRDMKSSDPDTVP-------AD-------DNVPIIELKERQKVVLTA 138
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDP 144
A+ G GKEH+K+ P ++Y P
Sbjct: 139 VARLGRGKEHSKFQPVCPPGYKYVP 163
>gi|190408037|gb|EDV11302.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Saccharomyces cerevisiae RM11-1a]
gi|207340297|gb|EDZ68691.1| YPR110Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259150260|emb|CAY87063.1| Rpc40p [Saccharomyces cerevisiae EC1118]
gi|323331346|gb|EGA72764.1| Rpc40p [Saccharomyces cerevisiae AWRI796]
Length = 335
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 107/255 (41%), Gaps = 42/255 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
+A ++V N++V+ DE +A RIGL+PL D +L D D F E ++
Sbjct: 78 VAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDP---DMLTWVDSNLPDDEKFTDENTIVL 134
Query: 58 TLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIV 107
+L+VKC D A + + D + P ++ AD DIL+
Sbjct: 135 SLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLA 194
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPKP 156
KLR GQE+ L+A+ G G +HAK++P + + P ++ + FP
Sbjct: 195 KLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFPPG 254
Query: 157 ----DEWPKSEY---SELDETQHEAPYNWEAKP--------NKYFFNVESAGALKPENIV 201
DE Y + D E E N + FNVES+GA+ PE I
Sbjct: 255 VIGIDEGSDEAYVKDARKDTVSREVLRYEEFADKVKLGRVRNHFIFNVESSGAMTPEEIF 314
Query: 202 IMGVTVLKQKLSNLQ 216
V +LK K L+
Sbjct: 315 FKSVRILKNKAEYLK 329
>gi|50307479|ref|XP_453719.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642853|emb|CAH00815.1| KLLA0D14861p [Kluyveromyces lactis]
Length = 334
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 110/252 (43%), Gaps = 37/252 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A ++V N++VL DE +A RIGL+PL D + + + F E ++ +L+
Sbjct: 78 VAPEYVYFFNNTSVLQDEVLAHRIGLVPLKVDPDMLSWVDTSLPESERFTDENTIVMSLN 137
Query: 61 VKCV---------DDQTRHVTTADLKSTDARVVPVTSR-NRDADMNEYGETDDILIVKLR 110
VKC +D A + + D + P + + A DIL+ KLR
Sbjct: 138 VKCTRNPDAPKDCEDPKVLYRNAHIYARDLKFEPQGKQVEQFAKCPVVAADPDILLAKLR 197
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPKP--- 156
GQE+ LRA+ G G +HAK++P + + P + + FPK
Sbjct: 198 PGQEISLRAHCILGIGADHAKFSPVSTASYRLLPHIQITQPITGDDAKKFVKCFPKGVAD 257
Query: 157 --------DEWPKSEYSELDETQHEAPYNWEAKPNK----YFFNVESAGALKPENIVIMG 204
+ P+ + + +H+ + + K + + FNVES+GA+ PE I
Sbjct: 258 VNEKGEAYIKDPRKDTVSREVLRHDE-FQGKVKLGRVRDHFIFNVESSGAMTPEEIFFKS 316
Query: 205 VTVLKQKLSNLQ 216
V +LK K L+
Sbjct: 317 VRILKNKAEYLK 328
>gi|88604132|ref|YP_504310.1| DNA-directed RNA polymerase subunit D [Methanospirillum hungatei
JF-1]
gi|88189594|gb|ABD42591.1| DNA-directed RNA polymerase, subunit D [Methanospirillum hungatei
JF-1]
Length = 272
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/252 (28%), Positives = 107/252 (42%), Gaps = 50/252 (19%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTLD 60
AI+ V++ N++ L DE + R+GLIPL +D D + C+C C C+V T+
Sbjct: 40 AIEDVKIYDNTSALFDEILTHRLGLIPLVTDP--DSFVPRSQCSCNGAGCPRCTVTLTMS 97
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V + V + DL S DA V P D+I IVKL K Q++ + A
Sbjct: 98 V----EGPGVVMSGDLISQDAVVRPAE--------------DNIPIVKLEKNQKVVIEAQ 139
Query: 121 AKKGFGKEHAKWNPT-------------------AGVCFEYDPDN--SMRHTLFPKPDEW 159
A G EHAKW+PT G+C E P ++ + D
Sbjct: 140 AYMERGMEHAKWSPTTVCGYKNYPIITHDERCDGCGLCVEVCPKEILEVKGSAVGVKDGG 199
Query: 160 PKS-------EYSELDETQHEAP-YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 211
+S E + L+ + P + ++ F VESAG+L I+ G+ LK++
Sbjct: 200 LESCSLCRLCEQACLNSGIGDEPAIHIGMDDRRFLFTVESAGSLPTVRIIKHGLLFLKKQ 259
Query: 212 LSNLQTQLAHDR 223
L L+ R
Sbjct: 260 SDELHEALSEIR 271
>gi|444321150|ref|XP_004181231.1| hypothetical protein TBLA_0F01700 [Tetrapisispora blattae CBS 6284]
gi|387514275|emb|CCH61712.1| hypothetical protein TBLA_0F01700 [Tetrapisispora blattae CBS 6284]
Length = 333
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 109/259 (42%), Gaps = 52/259 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV----VDRILYSRDCTCVDFCSECSVE 56
+A + V N++V+ DE +A RIGL+PL D VD+ L + F E ++
Sbjct: 78 VAAEHVYFLNNTSVIQDEVLAHRIGLVPLKVDPDMLTWVDQTLPEEE----RFTDENTIV 133
Query: 57 FTLDVKCV--DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE------------TD 102
+L+VKC D + T + +A V RD G+ TD
Sbjct: 134 LSLNVKCTKNDKAPKDCTDPKILYNNAHVYA-----RDLKFEPQGKQVETFANCPVVPTD 188
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK 161
DIL+ KLR GQE+ LRA+ G G +HAK++P A + P ++ + K E +
Sbjct: 189 PDILLAKLRPGQEISLRAHCILGIGSDHAKFSPVATASYRLLPHINITEPIRGKDAEKFQ 248
Query: 162 SEYS----------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
++ +D E + E + + FNVES GA+ P
Sbjct: 249 KCFTPGVIGIKDGEAYVKDARMDTVSREVFRHQEFADKVKLGRVRDHFVFNVESTGAMPP 308
Query: 198 ENIVIMGVTVLKQKLSNLQ 216
E I V +LK K L+
Sbjct: 309 EEIFFKSVRILKNKAQYLK 327
>gi|339521959|gb|AEJ84144.1| Polr1c protein [Capra hircus]
Length = 346
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 109/271 (40%), Gaps = 69/271 (25%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEGGTEIDTLQFRLQ 143
Query: 61 VKCVDDQ-------------------TRHVTTADLKSTDA-----RVVPVTSRNRDADMN 96
V+C + TRH+T L S A + PV
Sbjct: 144 VRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGSQAALFPEGAIRPVH--------- 194
Query: 97 EYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKP 156
DDILI +LR GQE+ L + KG GK+HAK++P A + PD ++ +
Sbjct: 195 -----DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGGA 249
Query: 157 DEWPKSEYS--------------------ELDETQHEAPYNWEAKP--------NKYFFN 188
E +S LD E N + K + Y F+
Sbjct: 250 GEELSRCFSPGVIEVQEIQGKKVASVANPRLDTFSREVFRNEKLKKVVRLARVRDHYIFS 309
Query: 189 VESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
VES G L P+ +VI + VL K +L
Sbjct: 310 VESTGVLPPDVLVIEAIKVLMGKCQRFLDEL 340
>gi|14591408|ref|NP_143488.1| DNA-directed RNA polymerase subunit D [Pyrococcus horikoshii OT3]
gi|3258066|dbj|BAA30749.1| 261aa long hypothetical DNA-directed RNA polymerase subunit D
[Pyrococcus horikoshii OT3]
Length = 261
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 104/245 (42%), Gaps = 56/245 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+ +IPL + DR + D +D ++T+
Sbjct: 42 FAVDEVEFYENDSALFDEIIAHRLAMIPLKTP--TDR--FELDALELD-------DYTVT 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DLKS D V PVT DI IVKL KGQ L AY
Sbjct: 91 LSLEAEGPGIVYSGDLKSDDPDVKPVTP--------------DIPIVKLAKGQRLVFNAY 136
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK--------------SEYSE 166
AK G GK+HAKW P F Y + H + K + W K +E
Sbjct: 137 AKLGRGKDHAKWQP----GFTYYKYFTRVH-ISKKINGWEKLAKLAKKRGLPTKENEEEV 191
Query: 167 LDET-----------QHEAPYNW-EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSN 214
+ ET ++E W E P+ Y F VE+ G L E IV + + +L +K
Sbjct: 192 IVETIKPFYIPKEFEEYEGKEIWEEIVPDTYVFVVETNGELPVEEIVKIALRILMRKADR 251
Query: 215 LQTQL 219
+L
Sbjct: 252 FINEL 256
>gi|124804792|ref|XP_001348113.1| DNA-directed RNA polymerase I, putative [Plasmodium falciparum 3D7]
gi|23496369|gb|AAN36026.1|AE014842_48 DNA-directed RNA polymerase I, putative [Plasmodium falciparum 3D7]
Length = 333
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 104/254 (40%), Gaps = 47/254 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD--------CTCVDFCSE 52
+AI+ V + N+ +++DE + R+GLIP D D I Y D C C
Sbjct: 86 IAIEKVNMYQNTGIIADEILCHRLGLIPFKFD--ADLINYKEDNEKYNHLNCFC------ 137
Query: 53 CSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNR-DADMNEYGETDD-ILIVKLR 110
F L VK +T + + S D + P+ + R + N D+ ILI K+
Sbjct: 138 ----FKLHVKFSSKRTGNDNYQSIYSKDLKWCPINEQQRIKFEKNPPKVVDENILITKIS 193
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE-------WPKSE 163
GQE+ L + +KG GK HAKW+P ++ P S +E P+
Sbjct: 194 SGQEIELICFLQKGIGKTHAKWSPVCTAVYKMYPHFSFNTNEQLSYEEKKDLVNICPQKV 253
Query: 164 YSELDETQ------------------HEAPYNWEAKPNKYFFNVESAGALKPENIVIMGV 205
+ D Q + +++ + N + F +ES G +I +
Sbjct: 254 FDIEDSQQIFVKNPLSCSTCRVCIEKYPKKISFQKEKNHFIFTIESTGCFSAADIFKKAL 313
Query: 206 TVLKQKLSNLQTQL 219
+L+QK+ N++ L
Sbjct: 314 FILRQKVINVKEAL 327
>gi|403213911|emb|CCK68413.1| hypothetical protein KNAG_0A07600 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 113/260 (43%), Gaps = 53/260 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV----VDRILYSRDCTCVDFCSECSVE 56
+A ++V + N++V+ DE +A RIG+IPL D +D+ L + F E +V
Sbjct: 78 VAAEYVYVMNNTSVIQDEVLAHRIGMIPLKVDPDMLTWIDQSLSEEE----KFTDENTVV 133
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGET------------- 101
TL+VKC TR++ A TD +++ S RD G+
Sbjct: 134 LTLNVKC----TRNLN-APKDCTDPKILYKNSSVYARDLRFEPQGKQLETFADCPVVPSD 188
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL--------- 152
DIL+ KLR QE+ LR + G G +HAK++P A + P ++ +
Sbjct: 189 PDILLAKLRPNQEISLRVHCILGIGSDHAKFSPVATASYRLLPHINILEPITGESAKRFQ 248
Query: 153 --FPKP----DEWPKS--EYSELDETQHEAPYNWEAKP--------NKYFFNVESAGALK 196
FP+ D K+ E + D E E K + + FNVES GA+
Sbjct: 249 ACFPQGVIGIDSEGKAVVENARKDTVSREVLRYEEFKDKVKLGRVRDHFIFNVESTGAMT 308
Query: 197 PENIVIMGVTVLKQKLSNLQ 216
PE I V +LK K L+
Sbjct: 309 PEEIFFKSVRILKNKAEYLK 328
>gi|150951291|ref|XP_001387588.2| RNA polymerase III (C) subunit [Scheffersomyces stipitis CBS 6054]
gi|149388472|gb|EAZ63565.2| RNA polymerase III (C) subunit [Scheffersomyces stipitis CBS 6054]
Length = 336
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 109/263 (41%), Gaps = 59/263 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD----EVVDRILYSRDCTCVDFCSECSVE 56
+A + V + N++V+ DE +A RIGLIPL D VD+ D + + ++
Sbjct: 80 VAAEAVYMFMNTSVIQDEVLAHRIGLIPLRVDPDKMNWVDKTQSPED----RYTEDNTIV 135
Query: 57 FTLDVKCVDD--------------QTRHVTTADLKSTDARVVPVTSRNRDA----DMNEY 98
TLDV C + + HV DLK + A D+
Sbjct: 136 LTLDVVCTKNPHAPKNSTNPKELYRNAHVYARDLK--------FEPHGKQAELFKDLPVV 187
Query: 99 GETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP----------DNSM 148
DILI KLR GQE+ LRA+ G G +HAK++P + + P D+++
Sbjct: 188 AADPDILIAKLRPGQEISLRAHCILGVGCDHAKFSPVSTASYRLMPVIDIVEPIRGDSAV 247
Query: 149 R-HTLFPK--------PDEWPKSEYSE------LDETQHEAPYNWEAKPNKYFFNVESAG 193
R FP + + K + L + + K + + FNVES G
Sbjct: 248 RFQKCFPSGVIGINADGEAYVKDARKDTVSREVLRHEEFDGKVKLGRKRDHFIFNVESTG 307
Query: 194 ALKPENIVIMGVTVLKQKLSNLQ 216
A+ PE I + VLK K+ L+
Sbjct: 308 AMAPEEIFFKSLLVLKNKVEYLR 330
>gi|145506343|ref|XP_001439135.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406313|emb|CAK71738.1| unnamed protein product [Paramecium tetraurelia]
Length = 297
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 110/259 (42%), Gaps = 57/259 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIG------LIPLTSDEVVDRILYSRDCTCVDFCSECS 54
MAI +V + N++ LSDEF+A R+ L+ + D+ +
Sbjct: 49 MAIHFVDIIENTSPLSDEFLAQRLAKCMIGKLMQIPLDD-----------------QKTK 91
Query: 55 VEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQE 114
V FTL K ++D +T+ L+ +V + R G+ I I +L K Q
Sbjct: 92 VVFTLRQKNLNDAPLEITSQHLEPEFGQVGEMAIRPVRMFSPINGKEVGIPITRLGKNQS 151
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH------TLFPKP---DEWPKSEYS 165
+ +R +A KGFGK HAKW P F ++ + + H +LF K D P + ++
Sbjct: 152 VHVRCHALKGFGKMHAKWTPINIATFRHEAELNFDHSQTQSLSLFEKQSIRDSCPMNVFA 211
Query: 166 ELDETQ----------------------HEAP--YNWEAKPNKYFFNVESAGALKPENIV 201
+D Q + P + K NKY F VESAG LK +IV
Sbjct: 212 -MDANQDLIVNAIEKCVFCEECIRCAESMKKPRLIKMQHKKNKYIFTVESAGQLKAADIV 270
Query: 202 IMGVTVLKQKLSNLQTQLA 220
+ VL++K+ + L+
Sbjct: 271 QKALIVLRKKVDEISQDLS 289
>gi|13124813|sp|O59303.2|RPOD_PYRHO RecName: Full=DNA-directed RNA polymerase subunit D
Length = 259
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 104/245 (42%), Gaps = 56/245 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+ +IPL + DR + D +D ++T+
Sbjct: 40 FAVDEVEFYENDSALFDEIIAHRLAMIPLKTP--TDR--FELDALELD-------DYTVT 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DLKS D V PVT DI IVKL KGQ L AY
Sbjct: 89 LSLEAEGPGIVYSGDLKSDDPDVKPVTP--------------DIPIVKLAKGQRLVFNAY 134
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK--------------SEYSE 166
AK G GK+HAKW P F Y + H + K + W K +E
Sbjct: 135 AKLGRGKDHAKWQP----GFTYYKYFTRVH-ISKKINGWEKLAKLAKKRGLPTKENEEEV 189
Query: 167 LDET-----------QHEAPYNW-EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSN 214
+ ET ++E W E P+ Y F VE+ G L E IV + + +L +K
Sbjct: 190 IVETIKPFYIPKEFEEYEGKEIWEEIVPDTYVFVVETNGELPVEEIVKIALRILMRKADR 249
Query: 215 LQTQL 219
+L
Sbjct: 250 FINEL 254
>gi|147919298|ref|YP_686966.1| DNA-directed RNA polymerase subunit D [Methanocella arvoryzae
MRE50]
gi|110622362|emb|CAJ37640.1| DNA-directed RNA polymerase, subunit D [Methanocella arvoryzae
MRE50]
Length = 262
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 25/147 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTL 59
MAID+V + N++VL DE +A R+GLIPL ++ +D +C C CS C V ++
Sbjct: 39 MAIDYVDIYDNTSVLFDEMLALRLGLIPLKTN--LDMYQLQSECECKGAGCSLCQVTLSV 96
Query: 60 DVK--CVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
+ CV V ++D+KS+D VPV ++I I++L++GQ++
Sbjct: 97 SAEGPCV------VHSSDMKSSDPETVPV--------------DNNIPIIELKQGQKVVA 136
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDP 144
A+ GF KEHAK+ P ++ P
Sbjct: 137 SGTARLGFTKEHAKYQPVCAAGYKNVP 163
>gi|308159629|gb|EFO62154.1| DNA-directed RNA polymerase RPB3 [Giardia lamblia P15]
Length = 326
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 122/266 (45%), Gaps = 23/266 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC-----TCVDFCSECSV 55
++ID V+ N+T L++EFIA R+GLIPL + + I Y C T ++ C EC+
Sbjct: 41 LSIDIVKFLDNNTTLTEEFIAHRLGLIPLKTAGPLSAISYWYTCDEEHSTEIE-CRECTF 99
Query: 56 EFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQEL 115
+ TL++ + R VT D+ D + S ++ + ET I I+KL G+ +
Sbjct: 100 KGTLNISNDSTKIRVVTDKDIH-FDHGGISTLSNYLESSLG-VTETPSIPILKLAPGESI 157
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAP 175
YA+K GK HAKW P A C P R L + + P+ +++++ T
Sbjct: 158 NALLYARKDRGKIHAKWCPAA--CVVLRP--LARIILCDEFERLPQ-QHNDIART----- 207
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNW 235
Y E P F +K N I +S + + + +++ P
Sbjct: 208 YISETCPRNVFTIENRRVVVKDPNSCIFCNDCFNVPISLDEQGESTNTIWH-----PALV 262
Query: 236 EAKPNKYFFNVESAGALKPENIVIMG 261
+PN ++F++ES G++ +I +M
Sbjct: 263 TQQPNAFYFSIESNGSISAYDIFLMA 288
>gi|323335178|gb|EGA76468.1| Rpc40p [Saccharomyces cerevisiae Vin13]
gi|323346326|gb|EGA80616.1| Rpc40p [Saccharomyces cerevisiae Lalvin QA23]
Length = 335
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 106/255 (41%), Gaps = 42/255 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
+A ++V N++V+ DE +A RIGL+PL D +L D D F E ++
Sbjct: 78 VAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDP---DMLTWVDSNLPDDEKFTDENTIVL 134
Query: 58 TLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIV 107
+L+VKC D A + + D + P ++ AD DIL+
Sbjct: 135 SLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLA 194
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPKP 156
KLR GQE+ L+A+ G G +HAK++P + + P ++ + FP
Sbjct: 195 KLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFPPG 254
Query: 157 ----DEWPKSEY---SELDETQHEAPYNWEAKP--------NKYFFNVESAGALKPENIV 201
DE Y + D E E N + FNVES GA+ PE I
Sbjct: 255 VIGIDEGSDEAYVKDARKDTVSREVLRYEEFADKVKLGRVRNHFIFNVESXGAMTPEEIF 314
Query: 202 IMGVTVLKQKLSNLQ 216
V +LK K L+
Sbjct: 315 FKSVRILKNKAEYLK 329
>gi|395534244|ref|XP_003769156.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Sarcophilus harrisii]
Length = 310
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 132/291 (45%), Gaps = 52/291 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ D +++F L
Sbjct: 51 MAVEKVFVYNNTSIVQDEILAHRLGLIPIRADP---RLFEYRNQGDEDGTEIDTLQFQLK 107
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNRDADMNEYGET----DDILIV 107
VKC + ++D + + +P+ ++ AD+ G DDILI
Sbjct: 108 VKCTRNPQAAKDSSDPNELYLNHKVYTKHMTWIPLGNQ---ADVFPEGTIRPVHDDILIA 164
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSEL 167
+LR GQEL L + KG GK+HAK++P A + PD ++ +P E +E EL
Sbjct: 165 QLRPGQELDLVMHCVKGIGKDHAKFSPVATASYRLLPDITLL-----QPVEGEAAE--EL 217
Query: 168 DETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGV-TVLKQKLSNLQTQL-AHDRVF 225
++ F S G ++ ++I V TV +L ++ H+ +
Sbjct: 218 ---------------SRCF----SPGVIQVQDIKGKKVATVANPRLDTFSREIFRHENLK 258
Query: 226 YVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
++ A + Y F+VES G L PE +V + VL K +L
Sbjct: 259 KLVRLARVR-----DHYIFSVESTGVLPPEVLVSEAIKVLMGKCRRFLDEL 304
>gi|302348806|ref|YP_003816444.1| DNA-directed RNA polymerase subunit D [Acidilobus saccharovorans
345-15]
gi|302329218|gb|ADL19413.1| DNA-directed RNA polymerase subunit D [Acidilobus saccharovorans
345-15]
Length = 287
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 106/253 (41%), Gaps = 43/253 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT-CVDFCSECSVEFTL 59
MA+D+V N + + DE IA R+GL+ L SDE + + +C+ + S C + L
Sbjct: 42 MAVDFVYFYDNESSVYDEIIAHRLGLLVLRSDEALRKYGSPEECSNASENDSHCFAQVYL 101
Query: 60 DVKCVDDQTR--HVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
+ + D +V +DLK +D + P+ Y ET IV L GQ + L
Sbjct: 102 EYEVPQDAASGVYVKASDLKFSDPDIRPI-----------YPETP---IVYLAPGQRIHL 147
Query: 118 RAYAKKGFGKEHAKWNPTA------GVCFEYDPD-----------------NSMRHTLFP 154
YA+ G G EH KW+P + V EYDP +++
Sbjct: 148 VGYARLGRGYEHGKWSPASVAVLRYSVHVEYDPSKVTSECLECISAYQDLVGAIKGGSAG 207
Query: 155 KPDEWPKSEYSEL---DETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 211
+ + K S L +E + P+K + VES GAL+P I+ L +K
Sbjct: 208 RLELNYKVNTSALRYCEEESCKGAIKVVYDPSKLYLTVESTGALEPARIIWEATNCLARK 267
Query: 212 LSNLQTQLAHDRV 224
L +L +V
Sbjct: 268 ADKLLKELEEAQV 280
>gi|417409912|gb|JAA51445.1| Putative rna polymerase i and iii subunit, partial [Desmodus
rotundus]
Length = 347
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 111/271 (40%), Gaps = 69/271 (25%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 88 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 144
Query: 61 VKCVDDQ-------------------TRHVTTADLKST-----DARVVPVTSRNRDADMN 96
V+C + TRH+T L + D + PV
Sbjct: 145 VRCTRNSHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPDGTIRPVH--------- 195
Query: 97 EYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKP 156
DDILI +LR GQE+ L + KG GK+HAK++P A + PD ++ + +
Sbjct: 196 -----DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEA 250
Query: 157 DEWPKSEYS--------------------ELDETQHEAPYNWEAKP--------NKYFFN 188
E + +S LD E N + K + Y F+
Sbjct: 251 AEELRRCFSPGVIEVHEVQGKKVARVANPRLDTFSREVFRNEKLKKVVRLARVRDHYIFS 310
Query: 189 VESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
VES G L P+ +V + VL K +L
Sbjct: 311 VESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 341
>gi|49618929|gb|AAT68049.1| RNA polymerase I 140 kDa subunit [Danio rerio]
Length = 343
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 126/290 (43%), Gaps = 50/290 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GL+P+ +D R+ R+ + +++ L
Sbjct: 84 MAIEKVFIYNNTSIIQDEILAHRLGLVPIKADP---RLFEYRNSEDQEGTEIDTIQLQLK 140
Query: 61 VKCVDDQTRHVTTADLK---------STDARVVPVTSR-NRDADMNEYGETDDILIVKLR 110
VKC + ++D K S D + +P+ ++ + AD DIL+ ++R
Sbjct: 141 VKCTRNPRAPKDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADAKIGPVHGDILLAQVR 200
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDET 170
GQEL + + KG GK HAK++P A + P+ ++ T+ + E K +S
Sbjct: 201 PGQELDIVMHCVKGIGKNHAKFSPVATASYRLLPEITLLQTIEGEQAERLKRCFS----- 255
Query: 171 QHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT----QLAHDRVFY 226
G ++ EN+ G V K S L T L HD +
Sbjct: 256 ---------------------PGVIELENV--NGRKVAKVVNSRLDTCSREVLRHDDLKS 292
Query: 227 VINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
++ + + F+VES G L P+ +V + VL K T+L
Sbjct: 293 LVKLGRVR-----DHFIFSVESTGILPPDVLVTEAINVLMSKCQKFLTEL 337
>gi|448091116|ref|XP_004197249.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|448095598|ref|XP_004198280.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|359378671|emb|CCE84930.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
gi|359379702|emb|CCE83899.1| Piso0_004496 [Millerozyma farinosa CBS 7064]
Length = 335
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 109/260 (41%), Gaps = 53/260 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD----FCSECSVE 56
+A + + + N++V+ DE +A RIGL+PL VD L S VD F E ++
Sbjct: 79 VAAEQIYIFNNTSVIQDEVLAHRIGLVPLK----VDPDLLSWVDPTVDEKDRFTDENTIV 134
Query: 57 FTLDVKCVDD--------------QTRHVTTADLK-STDARVVPVTSRNRDADMNEYGET 101
+LDV C + + HV DLK R V + N +
Sbjct: 135 LSLDVSCSKNPHAPQGSTDPKELYRNSHVYAKDLKFEPQGRQVEIFKNNPVVPTDP---- 190
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL--------- 152
+IL+ KLR GQE+ LRA+ G G +HAK++P A + P + +
Sbjct: 191 -NILLAKLRPGQEISLRAHCILGIGSDHAKFSPVATATYRLMPVIDITEPIKGEQAKKFQ 249
Query: 153 --FPKP-----DEW------PKSEYSELDETQHEAPYN---WEAKPNKYFFNVESAGALK 196
FP +E P+ + + +HE N K + + FNVES A+
Sbjct: 250 KCFPSGVIGINEEGEAFVKDPRKDTVSREVLRHEDLSNKVKLGRKRDHFIFNVESTSAMP 309
Query: 197 PENIVIMGVTVLKQKLSNLQ 216
PE I V +LK K L+
Sbjct: 310 PEEIFFKSVRILKNKAEYLR 329
>gi|429216770|ref|YP_007174760.1| DNA-directed RNA polymerase subunit alpha [Caldisphaera lagunensis
DSM 15908]
gi|429133299|gb|AFZ70311.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Caldisphaera lagunensis DSM 15908]
Length = 280
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTC-VDFCSECSVEFTL 59
MA+D+V N T + DE IA R+GL+ L SD+ + + +C + + C + L
Sbjct: 41 MAVDYVYFYDNDTSVYDEIIAHRLGLLVLKSDDAIHKYGLPENCAGKSETDTNCYTQIVL 100
Query: 60 DVKCVDDQTR--HVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
+ + +D +V +DLK +DA + P D IV L GQ + L
Sbjct: 101 EKELSNDSGSGIYVKASDLKFSDASIKPAYP--------------DTPIVYLAPGQRIHL 146
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEY 142
AYA+ G GKEH KW+P + +Y
Sbjct: 147 VAYARLGRGKEHGKWSPASASVLQY 171
>gi|378754855|gb|EHY64883.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Nematocida sp.
1 ERTm2]
Length = 271
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 108/238 (45%), Gaps = 38/238 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT--CVDFCSECSVEFT 58
+A+ WV + N TV++DE ++ R+GLIP+ +D + + + + E S++
Sbjct: 46 IAVHWVYIRENETVMADEILSHRLGLIPILADSSTLKNIVRSEVLDPLAELTDENSIKME 105
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
L+V+ D+ V +S D ++V T +++I +L G+ + +
Sbjct: 106 LNVENTTDKVLTV-----RSNDIKIVSNTKTTLK---------QNVIITRLAPGKRIECK 151
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK---------SEYSELDE 169
A G G+EHAKW PT+ VC+ Y + K E K + +DE
Sbjct: 152 MLAVVGTGREHAKWMPTS-VCY-YRSIKKLEMKDISKAMEIQKYFRDGFAIENGKPVIDE 209
Query: 170 TQHEAPYNWE----------AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT 217
+ + E A+P+ +FF +E A A P++I+ G+ +LK KL QT
Sbjct: 210 DRLLVNMDIEKNYPNEIKVRAEPDSFFFEIE-AIANSPKSILKKGLGILKNKLKEFQT 266
>gi|403222412|dbj|BAM40544.1| DNA-directed RNA polymerases I and III subunit [Theileria
orientalis strain Shintoku]
Length = 305
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 7/153 (4%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A++ VQ+ N+ V+ DE +A R+GLIP V+ L++ C + + SV F L
Sbjct: 73 LAVETVQIYQNTGVIQDELLAHRLGLIPFN----VNPDLFTFK-NCEEINDKNSVCFKLK 127
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET--DDILIVKLRKGQELRLR 118
VK ++ + S+ + VP++S N + D+ILI KL GQE+ L
Sbjct: 128 VKYDRNEPNSGNYLPVYSSFLKWVPLSSNQEATFKNNPPKPVHDNILITKLAPGQEIDLN 187
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT 151
Y +KG GK HAKW+P + +++ P + T
Sbjct: 188 VYLEKGTGKVHAKWSPVSTAFYKFMPSIKINDT 220
>gi|406606450|emb|CCH42224.1| DNA-directed RNA polymerase [Wickerhamomyces ciferrii]
Length = 295
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 102/250 (40%), Gaps = 35/250 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRILYSRDCTCVDFCSECSVEFTL 59
+A + V + N++V+ DE +A RIGLIPL D ++++ + S D + F +V TL
Sbjct: 41 VAAEQVYIFNNTSVIQDEVLAHRIGLIPLKIDPDLLNWVDNSVDESD-KFTDANTVVMTL 99
Query: 60 DVKCVDDQTRHVTTADLK---------STDARVVPVTSRNRDADMNEYGETDDILIVKLR 110
DV C + + D K + D + P ++ + DIL+ KLR
Sbjct: 100 DVSCTKNPNAPKNSTDPKELYRNSSIYARDLKFEPQGNQLENFKNPIEPADPDILLAKLR 159
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----------DNSMRHTLFP----- 154
GQE+ LR + G G +HAK++P + + P D FP
Sbjct: 160 PGQEISLRIHCVLGIGSDHAKFSPVSTASYRLLPTIDIIEPIRGDDAKKFQKCFPTGVIG 219
Query: 155 --------KPDEWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVT 206
K L + K N + FNVES GA+ PE I V
Sbjct: 220 INNGEAFVKDSRRDTVSREVLRHEEFNGKVKLGRKRNHFIFNVESTGAMSPEEIFFKSVR 279
Query: 207 VLKQKLSNLQ 216
+LK K L+
Sbjct: 280 ILKNKAEYLR 289
>gi|397779749|ref|YP_006544222.1| DNA-directed RNA polymerase subunit D [Methanoculleus bourgensis
MS2]
gi|396938251|emb|CCJ35506.1| DNA-directed RNA polymerase subunit D [Methanoculleus bourgensis
MS2]
Length = 276
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 98/231 (42%), Gaps = 50/231 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTL 59
+AI+ +++ N++VL DE +A R+GLIPL +D +DR + +CTC C C+ +TL
Sbjct: 39 LAIEDIRIYDNTSVLFDEMLAHRLGLIPLRTD--LDRYVTRAECTCEGAGCPVCTATYTL 96
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V + + V ++DL D P ++I I+ L K Q++ L A
Sbjct: 97 SV----EGPKTVYSSDLIPQDPDAAPAE--------------EEIPIIDLDKDQKVVLEA 138
Query: 120 YAKKGFGKEHAKWNPT-------------------AGVCFEYDPDNSMRHTLFPKPDEWP 160
YA G GKEHAKW T G+C + P + +
Sbjct: 139 YAVIGTGKEHAKWQATTACGYKNYPVITVDEKCDGCGMCVDECPRDVLEAGQGKVRVIGG 198
Query: 161 KSEYSEL----------DETQHEAPYNWEAKPNKYFFNVESAGALKPENIV 201
+ E+ L EA + A KY F VES G++ I+
Sbjct: 199 RQEFCSLCRLCERACLAGGIGTEAAIHIGADETKYIFVVESDGSMPVREII 249
>gi|224061238|ref|XP_002300385.1| predicted protein [Populus trichocarpa]
gi|222847643|gb|EEE85190.1| predicted protein [Populus trichocarpa]
Length = 390
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 127/302 (42%), Gaps = 61/302 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE +A R+GLIP+ D + L + D + ++ L
Sbjct: 125 MAIEKVFIANNTSVIQDEVLAHRLGLIPIKVDPRLFEYLSANDTPN----EKNTIVLKLH 180
Query: 61 VKCVDDQTR-HVTTADLK-------------STDARVVPVTSRNRDADM------NEYGE 100
+C Q R V + +LK D++ TS + D N
Sbjct: 181 ARCNRGQPRCSVYSQELKWLPNGSEFAKESEKPDSKPSTYTSFSCGQDSLPEFAGNPIST 240
Query: 101 TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWP 160
+DI++ KL GQE+ L A+A KG GK HAKW+P + P+ + +
Sbjct: 241 VEDIILAKLGPGQEIELEAHAVKGMGKTHAKWSPVGTAWYRMFPEVVLLENI-------- 292
Query: 161 KSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVI--MGVTVLKQKLSN---L 215
K E +E E + P F++E G K + IV T+ ++ +
Sbjct: 293 KGEDAE--ELIRKCPSG--------VFDIEDTGNAKKKAIVADSRACTLCRECIRGDEEW 342
Query: 216 QTQLAHDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 275
+ ++A RV + + F +ES GAL PE + V +L+ K + T+
Sbjct: 343 EKRVALHRV--------------KDHFIFTIESTGALPPEVLFTEAVKILEAKCERVITE 388
Query: 276 LA 277
L+
Sbjct: 389 LS 390
>gi|341897190|gb|EGT53125.1| hypothetical protein CAEBREN_31421 [Caenorhabditis brenneri]
Length = 365
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 123/298 (41%), Gaps = 52/298 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE---- 56
MA++ + L N++V+ DE + R+GL+PL D + + + +C E
Sbjct: 93 MALEKIYLYQNTSVIQDEVLCHRLGLLPLRVDPRAFQFPTEKVVGINEKGVDCDEEPEGD 152
Query: 57 ------FTLDVKCVDDQTRHVTTADLK------STDARV---VPVTSRNRDADMNEYGE- 100
F ++V C ++ T D K S +R +P+ ++ N +
Sbjct: 153 PTRNLIFKINVACTKNRNAANGTTDPKQLYHHSSVYSRAFEWIPIGNQKEGYTKNNKPKM 212
Query: 101 -TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW 159
+DDIL+ KLR GQE+ +A KG G++HAK++P A + P + + + E
Sbjct: 213 VSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAER 272
Query: 160 PKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+S +S E E K NK V+ A A
Sbjct: 273 LQSVFS-------EGVIGIEKKGNKKIAVVKDARA-----------------------DT 302
Query: 220 AHDRVFYVINEAPYNWEAKPNKYF-FNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
VF + A K ++F F+VES GALK +V+ V++ K +L+ Q+
Sbjct: 303 CSRNVFRHEDLAQVVHLGKNKQHFIFSVESTGALKASELVVEACKVMESKCRSLRKQI 360
>gi|241730129|ref|XP_002412264.1| transferase, putative [Ixodes scapularis]
gi|215505503|gb|EEC14997.1| transferase, putative [Ixodes scapularis]
gi|442748497|gb|JAA66408.1| Putative rna polymerase i and iii subunit [Ixodes ricinus]
Length = 344
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 116/262 (44%), Gaps = 47/262 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA D V + N++++ DE +A RIGL+P D R+ R+ + E +VEF L
Sbjct: 84 MAPDKVFMYNNTSIVQDEVLAHRIGLVPFNIDP---RMFDYREKDS-EGSPEDTVEFELK 139
Query: 61 VKCVDD--QTRHVTTADLKSTD----ARVVPVTSRNRDADMNEYGET------DDILIVK 108
VKC + + TT D D R + T A++ +G DDI++ K
Sbjct: 140 VKCTRNPQAPKDATTPDELYKDHVVYTRHLTWTPIGSQAEI--FGNKPPKPVYDDIILAK 197
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS--- 165
LR GQE+ L+ + KG G++HAK++P A + P+ + + + E + ++
Sbjct: 198 LRPGQEIDLKLHCMKGTGQDHAKFSPVATASYRLLPEIVLLREVRDEQAERLQGCFAKGV 257
Query: 166 -ELDETQ--HEAPYNWEAKP-----------------------NKYFFNVESAGALKPEN 199
ELDET H+ A+ + + F+VES GA P+
Sbjct: 258 IELDETDDGHKVARVANARADTCSRNVFQYDDLKDAVELTRVKDHFIFSVESTGAYPPDL 317
Query: 200 IVIMGVTVLKQKLSNLQTQLAH 221
+V + VL K ++L H
Sbjct: 318 LVTEAIKVLMAKCQAFLSELEH 339
>gi|260950905|ref|XP_002619749.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847321|gb|EEQ36785.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 333
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 115/254 (45%), Gaps = 41/254 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT--CVDFCSECSVEFT 58
+A + V + N++V+ DE +A RIGLIPL D D +++ F ++ +
Sbjct: 77 VAAETVYVFNNTSVIQDEVLAHRIGLIPLNVDP--DALVWIDPAADEAERFNDTNTIVMS 134
Query: 59 LDVKCVDDQTRHVTTADLK------STDARVVPVTSRNRDADMNEYGET----DDILIVK 108
LDV C + T D K S AR + + R A++ + DIL+ K
Sbjct: 135 LDVSCTRNPHAPAGTTDPKLLYRNSSVYARDLKFEPQGRQAELFKDSPVVPCDPDILLAK 194
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP----------DNSMR-HTLFPKP- 156
LR GQE+ LR + G G +HAK++P A + P + ++R FP
Sbjct: 195 LRPGQEISLRVHCVLGVGSDHAKFSPVATASYRLMPVIDILEPISGEQAVRFQKCFPSGV 254
Query: 157 ---DEWPKSEYSELDE-------TQHEAPYNWEAKPNK----YFFNVESAGALKPENIVI 202
DE ++ ++ + +HE ++ + K + + FNVES GA+ P I +
Sbjct: 255 IGIDEKGEAYVADARKDTVSREVLRHEE-FSGKVKLGRDREHFIFNVESTGAMSPAEIFL 313
Query: 203 MGVTVLKQKLSNLQ 216
V VLK K+ L+
Sbjct: 314 KSVRVLKNKVDYLR 327
>gi|407038499|gb|EKE39159.1| DNA-directed RNA polymerase, alpha subunit, N-terminal domain
containing protein [Entamoeba nuttalli P19]
Length = 259
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V LE NS+ + DE + R+GLIP+ +D + + +D D E ++ FTLD
Sbjct: 43 MAIEMVVLEDNSSAIPDEMLCHRLGLIPILADP--RKFKFPKDRHFTDPTEEDTIVFTLD 100
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRA 119
V C D ++ + S+D P + AD DDILI +L+ Q ++ +
Sbjct: 101 VTCTLDSAKNPVNNKVYSSDLIWEPQGEQETTFADCPIKPVFDDILIAELQPHQHIKCKL 160
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDP 144
+ KG G++HAK++P + P
Sbjct: 161 FCCKGIGQDHAKFSPVCPATYRLMP 185
>gi|307352912|ref|YP_003893963.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
gi|307156145|gb|ADN35525.1| DNA-directed RNA polymerase [Methanoplanus petrolearius DSM 11571]
Length = 274
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 105/245 (42%), Gaps = 50/245 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV-DFCSECSVEFTL 59
+AI+ V + N++ L DE +A R+GLIP+ +D + + +C+C + CS C FTL
Sbjct: 39 LAIEDVLIYDNNSALFDEMLAHRLGLIPIKTD--LSEYVKKSECSCGGEGCSSCQAIFTL 96
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V + V ++DL D R PV DI +VKL K Q++ L A
Sbjct: 97 SV----EGPGTVHSSDLIPADPRATPVNM--------------DIPVVKLEKDQKVVLEA 138
Query: 120 YAKKGFGKEHAKWNPT-------------------AGVCFEYDPDNSMR---HTLFPKPD 157
A+ G EHAKW PT G C E P N +R ++
Sbjct: 139 RAELNIGDEHAKWEPTLACGYKAYPVITIDDRCDACGNCVEECPRNVLRVGKKSVEIADG 198
Query: 158 EWPKSEYSELDETQHEAPYNWE-----AKPN--KYFFNVESAGALKPENIVIMGVTVLKQ 210
+ L E A + KP+ ++ F VES G+L + I+ + ++K
Sbjct: 199 KLEDCSMCRLCEKACMASGIGDRPAISVKPDNTRFLFVVESDGSLPVKEIMTCALGIMKD 258
Query: 211 KLSNL 215
K +L
Sbjct: 259 KSDSL 263
>gi|449705384|gb|EMD45440.1| DNA-directed RNA polymerases I and III subunit RPAC1, putative,
partial [Entamoeba histolytica KU27]
Length = 249
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 3/145 (2%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V LE NS+ + DE + R+GLIP+ +D + + +D D E ++ FTLD
Sbjct: 43 MAIEMVVLEDNSSAIPDEMLCHRLGLIPILADP--RKFKFPKDRHFTDPTEEDTIVFTLD 100
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQELRLRA 119
V C D ++ + S+D P + AD DDILI +L+ Q ++ +
Sbjct: 101 VTCTLDSAKNPVNNKVYSSDLIWEPQGEQETTFADCPIKPVFDDILIAELQPHQHIKCKL 160
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDP 144
+ KG G++HAK++P + P
Sbjct: 161 FCCKGIGQDHAKFSPVCPATYRLMP 185
>gi|25012925|gb|AAN71549.1| RH25219p [Drosophila melanogaster]
Length = 117
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/42 (78%), Positives = 39/42 (92%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSR 42
+AIDWVQLEANSTVLSDEF+A RIGLIPL SD+VV+R+ Y+R
Sbjct: 45 LAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTR 86
>gi|346464743|gb|AEO32216.1| hypothetical protein [Amblyomma maculatum]
Length = 340
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 113/255 (44%), Gaps = 53/255 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA D V L N++++ DE +A RIGL+P D R+ R+ + + E +VEF L
Sbjct: 84 MAPDKVYLYNNTSIVQDEVLAHRIGLVPFNIDP---RMFEYRE-SGNEGSPEDTVEFELK 139
Query: 61 VKCVDD--QTRHVTTADLKSTDARV-------VPVTSRNRDADMNEYGET------DDIL 105
VKC + + T D D V +P+ S+ + +G DDI+
Sbjct: 140 VKCTKNPHAPKDATVPDELYKDHVVYTKHLKWIPLGSQ-----VEIFGNKPPKPVHDDII 194
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
+ KLR GQE+ L+ + KG G+ HAK++P A + P+ + + + E ++ +S
Sbjct: 195 LAKLRPGQEIDLKLHCLKGTGQVHAKFSPVATASYRLLPEIRLLRPVLDEQAERLQTCFS 254
Query: 166 ----ELDET--QHEAPYNWEAK-----------------------PNKYFFNVESAGALK 196
ELDET H+ A+ + + F+VES GA
Sbjct: 255 NGVIELDETPDGHKVARVANARIDTCSRNVFRFDDLKDAVELTRVKDHFIFSVESTGAYA 314
Query: 197 PENIVIMGVTVLKQK 211
P+ +V V VL K
Sbjct: 315 PDLLVTEAVKVLMAK 329
>gi|321465930|gb|EFX76928.1| hypothetical protein DAPPUDRAFT_213644 [Daphnia pulex]
Length = 353
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 121/292 (41%), Gaps = 45/292 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA D V + N++++ DE +A R+GLIPL +D R+ R E ++EF L
Sbjct: 95 MAFDKVFMFNNTSIIQDEVLAHRLGLIPLKADP---RLFEFRAEDDDAGTPEDTLEFELK 151
Query: 61 VKCV--DDQTRHVTTADLKSTDARVV-------PVTSRNRDADMNEYGETDD-ILIVKLR 110
VKC +T+ T + D RV+ P+ + + G DD ILI K+R
Sbjct: 152 VKCSWNPQRTKDHTNPEHLYRDFRVLTSHLKWMPLGGQKDIFTPDAVGPVDDKILIAKMR 211
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDET 170
G EL ++ +A KG G+EHAK++P A + P + L E
Sbjct: 212 PGHELDIKLHAMKGTGREHAKFSPVATAFYRLLPQVKL------------------LKEV 253
Query: 171 QHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYV--I 228
+ EA + + ++ +G K K+++ + + VF +
Sbjct: 254 EGEAAQRLQKCFSPGVIDLVDSGEKK------------VAKVNDARYDICSRNVFRHEDL 301
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHEL 280
E + + F +ES GAL PE + +L QK +L + L
Sbjct: 302 KEDTVKLTRARDHFIFYIESTGALAPEVLFTEAAKILSQKCRVFLDELKNGL 353
>gi|356527169|ref|XP_003532185.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Glycine max]
Length = 393
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 129/309 (41%), Gaps = 71/309 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE ++ R+GLIP+ +D R+ + D + ++ F L
Sbjct: 124 MAIERVYIANNTSVVQDEVLSHRLGLIPIRADP---RLFEYPENAGDDKNEKNTIVFKLH 180
Query: 61 VKCVDDQTRHVTTAD-LK---------------STDARVVPVTSRNRDADM------NEY 98
V+C Q R +D LK + ++ TS D N
Sbjct: 181 VRCQVGQPRITVKSDKLKWLPNGSELPCEDVKPNAGSKPKTFTSFTCSQDSLPEFSNNSI 240
Query: 99 GET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD 157
G T DI++ KL GQE+ L A+A KG GK HAKW+P A + P+ + +
Sbjct: 241 GLTYSDIILAKLGPGQEIELEAHAVKGTGKTHAKWSPVATTWYRMLPEVVLLKDV----- 295
Query: 158 EWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT 217
+ E +E E +++ P N F++E G K +
Sbjct: 296 ---EDELAE--ELKNKCPVN--------VFDIEDIGKGK------------------RRA 324
Query: 218 QLAHDRVFYVINE---APYNWEAK------PNKYFFNVESAGALKPENIVIMGVTVLKQK 268
++A R + E WE + N + F +ES GAL PE + V +L+ K
Sbjct: 325 KVARPRDCTLCRECIRGGKEWEDRVSLRRVKNHFIFTIESTGALPPEVLFTEAVKILEDK 384
Query: 269 LSNLQTQLA 277
+ T+L+
Sbjct: 385 CERVITELS 393
>gi|426250337|ref|XP_004018893.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Ovis aries]
Length = 346
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 111/262 (42%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEGGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V R AD+ G DDIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHRVYTRHMTWVPLGNQADLFPEGAIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 258
Query: 166 --------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
LD E N + K + Y F+VES G L P
Sbjct: 259 PGVIEVQEIQGKKVARVANPRLDTFSREVFRNEKLKKVVRLARVRDHYIFSVESTGVLPP 318
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + VL K +L
Sbjct: 319 DVLVSEAIKVLMGKCQRFLDEL 340
>gi|14520746|ref|NP_126221.1| DNA-directed RNA polymerase subunit D [Pyrococcus abyssi GE5]
gi|13124531|sp|Q9V198.1|RPOD_PYRAB RecName: Full=DNA-directed RNA polymerase subunit D
gi|5457962|emb|CAB49452.1| rpoD DNA-directed RNA polymerase, subunit D [Pyrococcus abyssi GE5]
gi|380741285|tpe|CCE69919.1| TPA: DNA-directed RNA polymerase subunit D [Pyrococcus abyssi GE5]
Length = 259
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 103/248 (41%), Gaps = 62/248 (25%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+ +IPL + VDR + D +D ++T+
Sbjct: 40 FAVDEVEFYENDSALFDEIIAHRLAMIPLKTP--VDR--FELDALELD-------DYTVT 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DLKS D V P DI IVKL KGQ L A+
Sbjct: 89 LSLEAEGPGIVYSGDLKSDDPDVKPANP--------------DIPIVKLAKGQRLVFNAF 134
Query: 121 AKKGFGKEHAKWNP----------------------------TAGVCFEYDPDNSMRHTL 152
AK G GK+HAKW P G+ + + + + T+
Sbjct: 135 AKLGRGKDHAKWQPGFTYYKYFTRIHISKEIEGWEKLKKLAKKRGLPVKENENEVIVETI 194
Query: 153 FPKPDEWPKSEYSELDETQHEAPYNW-EAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 211
KP PK E+ E +E W E PN Y F VE+ G L E IV + + +L +K
Sbjct: 195 --KPFYIPK-EFEE-----YEGKGIWEEIVPNTYVFVVETNGELPVEEIVKIALKILMRK 246
Query: 212 LSNLQTQL 219
+L
Sbjct: 247 ADRFINEL 254
>gi|225716742|gb|ACO14217.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Esox lucius]
Length = 263
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 13/162 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++ L
Sbjct: 88 MAVEKVFIYNNTSIIQDEVLAQRLGLIPIKADP---RLFEYRNAGDEEGTEIDTIQLQLK 144
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSR-NRDADMNEYGETDDILIVKLR 110
+KC + +AD + S D VP+ ++ + AD N DIL+ KLR
Sbjct: 145 IKCTRNHQATKDSADPQELYLNHMVYSKDMTWVPIGNQADVVADANIGPVHGDILLAKLR 204
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL 152
GQEL + + KG G++HAK++P A + P+ ++ T+
Sbjct: 205 PGQELDIVMHCVKGIGQDHAKFSPVATASYRLLPEITLMKTV 246
>gi|379005500|ref|YP_005261172.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Pyrobaculum oguniense TE7]
gi|375160953|gb|AFA40565.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Pyrobaculum oguniense TE7]
Length = 273
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 102/231 (44%), Gaps = 32/231 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V + N++V+ DEF+A R+GLIPLT+ + Y T V +EC L
Sbjct: 54 MAIDTVVVVNNTSVMYDEFLAQRLGLIPLTTP-LHSLPTYEECATGVADPTECGTRLVLQ 112
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V D T V + DL S VVPV DI IVKL KGQ + + AY
Sbjct: 113 VTADGDVT--VYSGDLASERPDVVPVYK--------------DIPIVKLVKGQSIVIEAY 156
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDP-----DNSMRHT---LFPKPDEWPKSEYSEL----D 168
AK G K+HAKW A + Y P D R + P ++ K +++ D
Sbjct: 157 AKLGIAKDHAKWQ-AATASYYYYPKVIIKDEKCREICKEICPDLEDPIKCTFNKAWTCKD 215
Query: 169 ETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+ WE NKY F VES G + + +LK+K +L
Sbjct: 216 LCKGGLDVEWEK--NKYVFWVESFGNYDVDVALKEAFRILKRKFEAFTEEL 264
>gi|325187132|emb|CCA21673.1| DNAdirected RNA polymerase I and III subunit RPAC1 p [Albugo
laibachii Nc14]
Length = 343
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 123/284 (43%), Gaps = 54/284 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + NS+++ DE +A R+GLIPL D + + + E ++ F LD
Sbjct: 79 MAIEHVYIWNNSSIIQDEVLAHRLGLIPLLVDP--REFQHFPEDEEAEATDENTIVFKLD 136
Query: 61 VKCVDD-----QTRHVTTADLKSTDARVVPVTSRN-RDADMNEYGETDDILIVKLRKGQE 114
V C D + + + + S D VP ++ R + E DILI KLR GQ
Sbjct: 137 VTCRSDPNEPENSSKASHSSVYSRDLEWVPQGNQEERFTSIRPVSE--DILIAKLRPGQS 194
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEA 174
+ L A+ +KG G++HAK++P + + P+ E++E EA
Sbjct: 195 IALEAHCRKGIGRDHAKFSPVSTASYRL----------------LPRIEFTE-PVVGEEA 237
Query: 175 PYNWEAKPNKYFFNVESAGALKPENIV--IMGVTVLKQKL------SNLQTQLAHDRVFY 226
+ K F++E L P IV T+ ++ + S +Q HD
Sbjct: 238 LELAQNKCVSKVFDIEDIAGL-PTAIVSDSRKCTMCRECIRAPGWDSKIQLGRQHDH--- 293
Query: 227 VINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 270
+ F++ESAG +P+ ++ +TVL +K S
Sbjct: 294 ---------------FIFSIESAGMFQPQELLSEALTVLMEKCS 322
>gi|268556380|ref|XP_002636179.1| Hypothetical protein CBG01436 [Caenorhabditis briggsae]
Length = 367
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 117/268 (43%), Gaps = 49/268 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE---- 56
MA++ + L N++V+ DE + R+GL+PL D + + + +C E
Sbjct: 95 MALEKIYLYQNTSVIQDEVLCHRLGLLPLRVDPRGFQFPTEKVVGINEKGVDCEEEPTGD 154
Query: 57 ------FTLDVKCVDDQTRHVTTADLK------STDARV---VPVTSRNRDADMNEYGE- 100
F ++V C ++ T D K S +R VP+ ++ + D +
Sbjct: 155 PARHLIFKINVTCTKNRNAVPTATDPKQLYHNSSVYSRAFEWVPIGKQSGNYDKKNVPKM 214
Query: 101 -TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW 159
+DDIL+ KLR GQE+ +A KG G++HAK++P A + P + + + E
Sbjct: 215 VSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAER 274
Query: 160 PKSEYSE-------------------------LDETQHE--APYNWEAKPNKYF-FNVES 191
+S +SE + +HE A K ++F F+VES
Sbjct: 275 LQSVFSEGVIGIEKKGAKRIAVVKDARKDTCSRNVFRHEDLAKVVQLGKNKQHFIFSVES 334
Query: 192 AGALKPENIVIMGVTVLKQKLSNLQTQL 219
GALK +V+ V++ K +L+ Q+
Sbjct: 335 TGALKSAELVVEACKVMETKCRSLRKQI 362
>gi|225707230|gb|ACO09461.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Osmerus mordax]
Length = 351
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 116/261 (44%), Gaps = 45/261 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC----SVE 56
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ E +++
Sbjct: 88 MAVEKVYIYNNTSIIQDEILAHRLGLIPIKADP---RLFEYRNIGEEGGEEEGTEIDTIQ 144
Query: 57 FTLDVKCVDDQTRHVTTADLK---------STDARVVPVTSR-NRDADMNEYGETDDILI 106
L +KC + ++D + S D + VP+ ++ + AD N DILI
Sbjct: 145 LQLKIKCTRNPRAPKDSSDPRELYLNHMVYSKDMKWVPIGNQADVFADANIGPVHGDILI 204
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS- 165
+LR GQEL + KG GK+HAK++P A + P+ ++ T+ + E KS +S
Sbjct: 205 AQLRPGQELDVVMSCVKGIGKDHAKFSPVATASYRLLPEITLMETVEGEKAERLKSCFSP 264
Query: 166 ---EL----------------DETQHEAPYNWEAK--------PNKYFFNVESAGALKPE 198
EL D E + + K + + F+VES G L P+
Sbjct: 265 GVIELENCNGKVIAKVVNSRPDTCSREVLRHDDLKNLVKLARVRDHFIFSVESTGILPPD 324
Query: 199 NIVIMGVTVLKQKLSNLQTQL 219
+V + VL K +L
Sbjct: 325 VVVTEAIKVLMSKCRRFLNEL 345
>gi|300681098|sp|P0CG28.1|RPOD_METAC RecName: Full=DNA-directed RNA polymerase subunit D
Length = 266
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 119/271 (43%), Gaps = 59/271 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV--DFCSECSVEFT 58
+AI++V L N++VL DE +A R+ LIPL +D ++ L +C + C C V T
Sbjct: 41 LAIEYVNLYDNTSVLYDEQLALRLSLIPLATD--IETYLPQAECDVCGGEGCPACEVSLT 98
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
L + V + DL S+D ++ P AD N + IV+L+KGQ+L L
Sbjct: 99 LSA----EGPGTVYSRDLISSDPKIQP-------ADPN-------VPIVELKKGQKLVLE 140
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNW 178
A A G+G++ KW AGV Y P D H A
Sbjct: 141 AIAHMGYGRDSVKWQ--AGVACGY--------------KNMPVITIENCDACGHCA---- 180
Query: 179 EAKPNKYFFNVESAGA-LKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNWEA 237
A+ K +VE AGA + E+I+ + L +++ ++ A FY
Sbjct: 181 -AECPKGIISVEEAGAKIAEEDIMKCSICRLCEQVCDIN---AIKVDFY----------- 225
Query: 238 KPNKYFFNVESAGALKPENIVIMGVTVLKQK 268
N + F +ES G+ +++V+ V+K K
Sbjct: 226 -ENSFVFTMESDGSYTAKDLVLNAANVIKGK 255
>gi|19113623|ref|NP_596831.1| DNA-directed RNA polymerase I and III subunit Rpc40
[Schizosaccharomyces pombe 972h-]
gi|13124507|sp|O94616.1|RPAC1_SCHPO RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=RNA polymerases I and III subunit AC1; AltName:
Full=DNA-directed RNA polymerases I and III 40 kDa
polypeptide; Short=AC40; AltName: Full=RPC39
gi|5531859|gb|AAD44503.1|AF082512_1 RNA polymerase subunit Rpc40 [Schizosaccharomyces pombe]
gi|4490662|emb|CAB38687.1| DNA-directed RNA polymerase I and III subunit Rpc40
[Schizosaccharomyces pombe]
gi|4760696|dbj|BAA77385.1| RPA42 [Schizosaccharomyces pombe]
Length = 348
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 118/262 (45%), Gaps = 46/262 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVV----DRILYSRDCTCVDFCSECSVE 56
+A ++V + N++++ DE ++ RIGL+P+++D + L ++ T D+ + V
Sbjct: 84 LAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKWFQHPLPGQEATHTDYDT---VV 140
Query: 57 FTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRN-RDADMNEYGETDDILI 106
F+L+ KC D R +++ S D P + R AD DI++
Sbjct: 141 FSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGRQEERFADNPIRVVNPDIVV 200
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----------DNSMRHTLFPK 155
KLR GQE+ L A+A G G++HAK++P A + P D FPK
Sbjct: 201 AKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPK 260
Query: 156 --------PDEWPKSEYSEL--DETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
PD ++ +++ D E + E + Y F+VES G +KP
Sbjct: 261 GVIELEEGPDGKKQARVADVRKDTVSRECLRHPEFADKVQLGRVRDHYLFSVESTGIMKP 320
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ + I + VLK K +++ L
Sbjct: 321 DVLFIKSIAVLKSKCLAVKSSL 342
>gi|315229895|ref|YP_004070331.1| DNA-directed RNA polymerase subunit D [Thermococcus barophilus MP]
gi|315182923|gb|ADT83108.1| DNA-directed RNA polymerase subunit D [Thermococcus barophilus MP]
Length = 258
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 68/134 (50%), Gaps = 25/134 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+ +IPLT+ DR + D +D E+T+
Sbjct: 39 FAVDEVEFYENDSALFDEIIAHRLAMIPLTTP--YDR--FELDALELD-------EYTVT 87
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DLKS D V PVT +I IVKL +GQ+L L AY
Sbjct: 88 LSLEAEGPGVVYSGDLKSDDPDVKPVTP--------------NIPIVKLAEGQKLTLNAY 133
Query: 121 AKKGFGKEHAKWNP 134
AK G GK+HAKW P
Sbjct: 134 AKLGRGKDHAKWQP 147
>gi|1914859|emb|CAA71570.1| homologous to 40kD subunit of RNA-polymerase I and III [Cricetulus
griseus]
Length = 347
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 118/262 (45%), Gaps = 46/262 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD----EVVDRILYSRDCTCVDFCSECSVE 56
+A ++V + N++++ DE ++ RIGL+P+++D + L ++ T D+ + V
Sbjct: 83 LAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKWFQHPLPGQEATHTDYDT---VV 139
Query: 57 FTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRN-RDADMNEYGETDDILI 106
F+L+ KC D R +++ S D P + R AD DI++
Sbjct: 140 FSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGRQEERFADNPIRVVNPDIVV 199
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----------DNSMRHTLFPK 155
KLR GQE+ L A+A G G++HAK++P A + P D FPK
Sbjct: 200 AKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPK 259
Query: 156 --------PDEWPKSEYSEL--DETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
PD ++ +++ D E + E + Y F+VES G +KP
Sbjct: 260 GVIELEEGPDGKKQARVADVRKDTVSRECLRHPEFADKVQLGRVRDHYLFSVESTGIMKP 319
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ + I + VLK K +++ L
Sbjct: 320 DVLFIKSIAVLKSKCLAVKSSL 341
>gi|344264275|ref|XP_003404218.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Loxodonta africana]
Length = 306
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 112/260 (43%), Gaps = 47/260 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 47 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQEDEEGTEIDTLQFRLQ 103
Query: 61 VKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET----DDILIV 107
V+C D + + + VP+ ++ AD+ G DDILI
Sbjct: 104 VRCTRNPHASKDSSDPSELYVNHKVYTRHMTWVPLGNQ---ADVFPEGTIRPVHDDILIA 160
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS-- 165
+LR GQE+ L + KG GK+HAK++P A + PD ++ + + E + +S
Sbjct: 161 QLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELRQCFSPG 220
Query: 166 ------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKPEN 199
LD E N + K + Y F+VES G L P+
Sbjct: 221 VIEVQEVQGKKVARVANPRLDTFSREVFRNEKLKKVVRLARVRDHYIFSVESTGVLPPDV 280
Query: 200 IVIMGVTVLKQKLSNLQTQL 219
+V + VL K +L
Sbjct: 281 LVSEAIKVLMGKCRRFLDEL 300
>gi|145592521|ref|YP_001154523.1| RNA polymerase, insert [Pyrobaculum arsenaticum DSM 13514]
gi|166229319|sp|A4WNA4.1|RPOD_PYRAR RecName: Full=DNA-directed RNA polymerase subunit D
gi|145284289|gb|ABP51871.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum arsenaticum DSM
13514]
Length = 259
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 102/231 (44%), Gaps = 32/231 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V + N++V+ DEF+A R+GLIPLT+ + Y T V +EC L
Sbjct: 40 MAIDTVVVVNNTSVMYDEFLAQRLGLIPLTT-PLHSLPTYEECATGVADPTECGTRLVLQ 98
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V D T V + DL S VVPV DI IVKL KGQ + + AY
Sbjct: 99 VTADGDVT--VYSGDLTSERPDVVPVYK--------------DIPIVKLVKGQSIVIEAY 142
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDP-----DNSMRHT---LFPKPDEWPKSEYSEL----D 168
AK G K+HAKW A + Y P D R + P ++ K +++ D
Sbjct: 143 AKLGIAKDHAKWQ-AATASYYYYPKVIIKDEKCREICKEICPDLEDPVKCTFNKAWTCKD 201
Query: 169 ETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+ WE NKY F VES G + + +LK+K +L
Sbjct: 202 LCKGGLDVEWEK--NKYVFWVESFGNYGVDVALKEAFRILKRKFEAFTEEL 250
>gi|149571084|ref|XP_001507416.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Ornithorhynchus anatinus]
Length = 346
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 116/260 (44%), Gaps = 47/260 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+T+D R+ R+ + +++F L
Sbjct: 87 MAVEKVFVYNNTSIMQDEVLAHRLGLIPITADP---RLFEYRNQGDEEGTEIDTLQFQLK 143
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNRDADMNEYGET----DDILIV 107
VKC + + ++D + + VP+ ++ AD+ G DDILI
Sbjct: 144 VKCTWNPSAAKDSSDPNQLYLNHKVYTKHMTWVPLGNQ---ADLFPEGAIRPVHDDILIT 200
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS-- 165
+LR GQEL L + KG GK+HAK++P V + PD ++ + + E K +S
Sbjct: 201 QLRPGQELDLLMHYVKGVGKDHAKFSPVDTVSYRLLPDITLLQPVEGEMAEKLKDCFSPG 260
Query: 166 ------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKPEN 199
L+ E + E K + Y F+VES G L P+
Sbjct: 261 VIQIQEIKGKKVAVVANPRLETFSREVFRHDELKKLVRLARVRDHYIFSVESTGVLPPDV 320
Query: 200 IVIMGVTVLKQKLSNLQTQL 219
+V + +L K +L
Sbjct: 321 LVSEAIKILMGKCRRFLDEL 340
>gi|350403568|ref|XP_003486838.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Bombus impatiens]
Length = 505
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 98/200 (49%), Gaps = 22/200 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GL+PL +D + S + + ++ + L
Sbjct: 80 MAIEKVYIVNNTSLIQDEVLAHRLGLVPLQADPRLFEYPSSTIKNEDEVSDQDTLRYELK 139
Query: 61 VKCV------DDQTR---HVTTADLKSTDARVVPVTSRNRDADMNEYGET------DDIL 105
V C D R +++ S D + VP+ R A++ G DDIL
Sbjct: 140 VSCTWNPQAPKDSRRTNDMYRNSNVYSKDIKWVPI---GRQAELYPRGAEQLGVLEDDIL 196
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I K+R GQE+ + +A KG GK+HAK++P A + PD + + + + KS +S
Sbjct: 197 ICKMRPGQEIHVFMHAVKGIGKDHAKFSPVATASYRLLPDIQLVKPVRGEMADRLKSCFS 256
Query: 166 ----ELDETQHEAPYNWEAK 181
E+ ET+ P + EAK
Sbjct: 257 IGVIEVIETKPGDPESREAK 276
>gi|297840495|ref|XP_002888129.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
gi|297333970|gb|EFH64388.1| ATRPAC43 [Arabidopsis lyrata subsp. lyrata]
Length = 385
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE +A R+GLIP+ +D + L D + ++ F L
Sbjct: 119 MAIEKVFVANNTSVIQDEVLAHRLGLIPIAADPRLFEYLSENDQPN----EKNTIVFKLH 174
Query: 61 VKCV-DDQTRHVTTADLK---------------STDARVVPVTSRNRD-----ADMNEYG 99
VKC D R V T++LK +T + S ++D A
Sbjct: 175 VKCPKGDPRRKVLTSELKWLPNGSELVKESGGLTTKPKTYTSFSHSQDSFPGFAKNPITP 234
Query: 100 ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DILI KL GQE+ L A+A KG GK HAKW+P A + P+
Sbjct: 235 SFQDILIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 280
>gi|301757344|ref|XP_002914512.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Ailuropoda melanoleuca]
gi|281345711|gb|EFB21295.1| hypothetical protein PANDA_002414 [Ailuropoda melanoleuca]
Length = 346
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 115/262 (43%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGAIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 258
Query: 166 ----ELDETQHEA----------PYNWEAKPNK--------------YFFNVESAGALKP 197
E+ E Q E ++ E N+ Y F+VES G L P
Sbjct: 259 PGVIEVQEVQGEKVARVANPRLDTFSREVFRNEKLKKMVRLARVRDHYIFSVESTGVLPP 318
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + VL K +L
Sbjct: 319 DVLVSEAIKVLMGKCRRFLDEL 340
>gi|402582559|gb|EJW76504.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Wuchereria bancrofti]
Length = 299
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 118/262 (45%), Gaps = 46/262 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRI----LYSRDCTCVDFCSE---- 52
+AI+ V L N++++ DE ++ R GL+P+ +D + ++ + D + VD C+E
Sbjct: 29 LAIEKVYLYQNTSIIPDEVLSHRFGLLPIKADPRLFKMPLTPVIGIDESGVD-CNEEPAG 87
Query: 53 ---CSVEFTLDVKCVDDQTRHVTTADLK---------STDARVVPVTSRNRDADMNEYGE 100
++ F + V C + T + K S + +P+ ++
Sbjct: 88 DPTRNLIFEIKVTCSRNPNALKTATNPKEIYENAFVYSNSFKWIPIGDQSTSLPYPPAMV 147
Query: 101 TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWP 160
DDIL+ +LR GQE+ R + KG G++HAK++P A + P ++ +
Sbjct: 148 HDDILVAQLRPGQEIEARCHCLKGLGRDHAKFSPVATASYRLLPQIVLKRKFSGADAQRI 207
Query: 161 KSEYS----ELDE------------------TQHE--APYNWEAKPNKYF-FNVESAGAL 195
KS +S E+D +HE A Y ++ +F F+VES GAL
Sbjct: 208 KSSFSEGVIEIDADGVAIVKDARSDTCSRNILRHEDLAEYIELSRIKDHFIFSVESTGAL 267
Query: 196 KPENIVIMGVTVLKQKLSNLQT 217
K +V+ V+++K LQ+
Sbjct: 268 KSAELVVEACKVMEEKCRTLQS 289
>gi|168042851|ref|XP_001773900.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674744|gb|EDQ61248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 360
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 125/302 (41%), Gaps = 65/302 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE +A R+GL+P+ +D L+ + + ++ F +D
Sbjct: 99 MAIEKVYIANNTSVIQDEVLAHRLGLLPIKADPR----LFDYKSEEENANEKNTIVFKID 154
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR---NRDADMNEYGETD--------------- 102
V C R V + + S + +P S N +G +
Sbjct: 155 VVCTRKGER-VLNSSVTSDQMKWLPEGSEMPFNTMTKFTSFGSSQKNLPGLPAEGISCQY 213
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK 161
DI++ KLR GQ + L +A KG G HAKW+P A + R+ + P
Sbjct: 214 PDIIVAKLRPGQAIELEGHAIKGSGNIHAKWSPVA----------TARYRMLP------- 256
Query: 162 SEYSELDETQHEAPYNWEAKPNKYFFNVESAGALK------PENIVIMGVTVLKQKLSNL 215
E + +++ Q + K F++E G +K P N + V + ++
Sbjct: 257 -EVNLMEDIQGKLAEELVQKCPTGVFDIEDVGTVKKAIVARPRNCTLCRECV---RGTDW 312
Query: 216 QTQLAHDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 275
++ RV + + F +ES GAL+PE + + +L +K + T+
Sbjct: 313 DKRVQLTRV--------------KDHFIFTIESTGALRPEVLFTEAIKILNEKCHRIITE 358
Query: 276 LA 277
L+
Sbjct: 359 LS 360
>gi|440902447|gb|ELR53239.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bos grunniens
mutus]
Length = 343
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 111/258 (43%), Gaps = 46/258 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEGGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRN-------RDADMNEYGET----DDILIVKL 109
V+C TR+ A S + + +R+ AD+ G DDILI +L
Sbjct: 144 VRC----TRNPHAAKDSSDPNELYVMYTRHMTWVPLGNQADLFPEGAIRPVHDDILIAQL 199
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS---- 165
R GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 200 RPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVI 259
Query: 166 ----------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKPENIV 201
LD E N + K + + F+VES G L P+ +V
Sbjct: 260 EVQEIQGKKVARVANPRLDTFSREVFRNEKLKKVVRLARVRDHFIFSVESTGVLPPDVLV 319
Query: 202 IMGVTVLKQKLSNLQTQL 219
+ VL K +L
Sbjct: 320 SEAIKVLMGKCQRFLDEL 337
>gi|146164033|ref|XP_001012875.2| DNA-directed RNA polymerase I 40 kDa polypeptide [Tetrahymena
thermophila]
gi|146145882|gb|EAR92630.2| DNA-directed RNA polymerase I 40 kDa polypeptide [Tetrahymena
thermophila SB210]
Length = 336
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 130/293 (44%), Gaps = 57/293 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI V + N++++ DE +A R+GLIP+ +D L+ ++ + S++FTL
Sbjct: 84 MAIHKVYIYQNTSIIPDEVLAHRLGLIPIYADPR----LFEEKQEEDEYNEKNSLKFTLK 139
Query: 61 VKCVD-DQTRHVTTADLK--------------STDARVVPVTSRNRDADMNEYGET-DDI 104
+KC +Q ++ + ADL+ S D + V +N+ + N D+I
Sbjct: 140 IKCSKKEQYKNYSEADLENLTPETYLENAIVYSGDFKWVSQGEQNKKFEENPIRMVHDNI 199
Query: 105 LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEY 164
++ KLR+ QE+ +KG GK HAKW+P VC Y + L P+ +
Sbjct: 200 IVAKLRENQEIICEVICQKGIGKTHAKWSP---VCTAY-------YRLMPEININSDITG 249
Query: 165 SELDETQHEAPYN-WEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDR 223
++ E + P ++ + NK + E A + E + + + N + +L
Sbjct: 250 AKAQELKERCPLKVYDVQNNKAIVSNERACTMCRE-------CIREDEEFNSKIEL---- 298
Query: 224 VFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
AK ++F ++S G +P IV + +LKQK S+ L
Sbjct: 299 -------------AKKKEHF--IQSVGIYEPHEIVKEAIQILKQKASSFMLNL 336
>gi|305662634|ref|YP_003858922.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
gi|304377203|gb|ADM27042.1| RNA polymerase insert [Ignisphaera aggregans DSM 17230]
Length = 281
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 110/254 (43%), Gaps = 53/254 (20%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRI-------LY-----SRDCTCVDF 49
A+D V + N++ + DE +A RI +IPL S+E ++RI Y S D D
Sbjct: 40 AVDEVMVVINTSHMFDEMLAHRIAMIPLRSEEALERIKGLDIDVCYKCGSDSEDKPPSDV 99
Query: 50 CSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKL 109
C +C V L+ +D V ++D+KS D V PV YG +I IV L
Sbjct: 100 CEKCYVHMFLEA-VAEDSEYTVYSSDIKSEDEFVKPV-----------YG---NIPIVIL 144
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNP-TAGV-------------------CFEYDPDNSMR 149
GQ + L A+ G G EH KW+P T V C E P N +
Sbjct: 145 SPGQRISLELRARVGRGIEHIKWSPATIAVTRYVADIRISEDLCNLCKKCIEVCPKNVL- 203
Query: 150 HTLFPKPDEWP-KSEYSELDETQHEAP---YNWEAKPNKYFFNVESAGALKPENIVIMGV 205
T++ + K E + + P + + N+Y +ES+GAL+PE I+ +
Sbjct: 204 -TVYQNRIQVKDKYECILCKQCMYACPTKAIDVSYRDNEYILVIESSGALEPETILRESI 262
Query: 206 TVLKQKLSNLQTQL 219
+L +L + +
Sbjct: 263 GILLNELEIISKSI 276
>gi|431838337|gb|ELK00269.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pteropus
alecto]
Length = 346
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 258
Query: 166 --------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
LD E N + K + Y F+VES G L P
Sbjct: 259 PGVIEVHEVQGKKVARVANPRLDTFSREVFRNEKLKKVVRLARVRDHYIFSVESTGVLPP 318
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + VL K +L
Sbjct: 319 DVLVSEAIKVLMGKCQRFLDEL 340
>gi|156936978|ref|YP_001434774.1| DNA-directed RNA polymerase subunit D [Ignicoccus hospitalis
KIN4/I]
gi|156565962|gb|ABU81367.1| DNA-directed RNA polymerase, subunit D [Ignicoccus hospitalis
KIN4/I]
Length = 283
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 104/255 (40%), Gaps = 51/255 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT-----------CVDF 49
MA+D++ ++ N + L +E +A R+ +IPL S+E ++R C CV
Sbjct: 39 MAVDFIAVDRNDSTLFNEVLAHRLAMIPLRSEEALERYAPPEACMECTPEEAEADKCVVD 98
Query: 50 CSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKL 109
C V LD Q V + DLKS D V PV ++I +V L
Sbjct: 99 GKPCYVRLYLDASAEGKQI-IVYSKDLKSEDEDVRPV--------------YENIPVVPL 143
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTA---------------GVC---FEYDPDNSMRHT 151
Q++++ AYA+ G G+EHAKW P G+C + + +
Sbjct: 144 IGDQKVKVIAYARLGRGREHAKWMPATVSIVKPLLKGISVKEGLCDAECQKECAEKCKEA 203
Query: 152 LFPKPDEWPKSEYSELDETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMG 204
K + E + L + Y E K + Y F +ES G+L ++
Sbjct: 204 FVMKDGKLTLKEGTTLSMVMYCIEYVCEGKGIRPVFEEDTYLFELESDGSLSARRTLVEA 263
Query: 205 VTVLKQKLSNLQTQL 219
+ +KLS L+ +L
Sbjct: 264 AKAVVEKLSELKNRL 278
>gi|330840939|ref|XP_003292464.1| RNA polymerase III subunit [Dictyostelium purpureum]
gi|325077271|gb|EGC30994.1| RNA polymerase III subunit [Dictyostelium purpureum]
Length = 338
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 118/272 (43%), Gaps = 53/272 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N+++L DE +A R+GLIP+ VD ++ ++ +E ++ F L
Sbjct: 103 MAIEKVYIINNTSILQDEVLAHRLGLIPIK----VDPRKFNFHLPNKEYTAEDTLIFKLK 158
Query: 61 VKCVDDQTRHVTTADLKSTDARVVP----VTSRNRDADMNEYGETDDILIVKLRKGQELR 116
VKC D + + S VP + + D E DDI I++LR GQ +
Sbjct: 159 VKCERDANGKIINDTVLSKHLEWVPHDDQIAMFPNEEDHPRPVE-DDIPIMRLRPGQVID 217
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPY 176
++ Y +K G+EH KW+P + P S+ DE + E +E + + P
Sbjct: 218 VQLYCEKNIGREHIKWSPVCTASYRLLPVISV--------DESIQGESAE--KLVNTCP- 266
Query: 177 NWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNWE 236
K F++E +G+ +V + L QKL N+E
Sbjct: 267 -------KKVFDIEDSGS-----VVAARIQSLNQKL---------------------NFE 293
Query: 237 AKPNKYFFNVESAGALKPENIVIMGVTVLKQK 268
+ + F++ES GAL + + +L +K
Sbjct: 294 RIRDHFIFSIESTGALTSRELFQEAIKILIEK 325
>gi|383850329|ref|XP_003700748.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Megachile rotundata]
Length = 509
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 24/163 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
MAI+ V + N+++L DE +A R+GLIPL +D R+ T D + ++ +
Sbjct: 79 MAIEKVYIVNNTSLLQDEVLAHRLGLIPLQADP---RLFDYPSSTAKDEDEVSDQDTLRY 135
Query: 58 TLDVKCV-----DDQTRHVT----TADLKSTDARVVPVTSRNRDADMNEYGET------D 102
L V C +R +T +++ S D + VP+ R A++ G +
Sbjct: 136 ELKVTCTWNPQAPKDSRRITDMYRNSNVYSKDIKWVPI---GRQAELYPRGTEQLGVLEN 192
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DILI K+R GQE+ +A KG GK+HAK++P A + PD
Sbjct: 193 DILICKMRPGQEIHAFMHAIKGIGKDHAKFSPVATASYRLLPD 235
>gi|71749338|ref|XP_828008.1| DNA-directed RNA polymerase subunit alpha [Trypanosoma brucei
TREU927]
gi|70833392|gb|EAN78896.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 337
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCS---ECSVEF 57
A D + +E N V+ DE +A RIGL+PL V + Y D V F + E + F
Sbjct: 77 FAFDRILIEHNDGVVPDELLAHRIGLVPLAGP--VSSMQYITDSASVGFDNLDPERVLLF 134
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRN----RDADMNEYGETDDILIVKLRKGQ 113
LDV R V T + S + P+ + R D + DI++ +L GQ
Sbjct: 135 ELDVTA----KRDVPTTSVYSGHLKWQPIAKQEELAARSEDDRVFLVHPDIVLTRLGPGQ 190
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCF 140
L+LRA A KG G HAKW P A CF
Sbjct: 191 RLKLRAIAIKGIGAVHAKWTPVAA-CF 216
>gi|452210696|ref|YP_007490810.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Tuc01]
gi|452100598|gb|AGF97538.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Tuc01]
Length = 258
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 116/272 (42%), Gaps = 57/272 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV--DFCSECSVEFT 58
+AI++V L N++VL DE +A R+ LIPL +D ++ + +C + C C V T
Sbjct: 41 LAIEYVNLYDNTSVLYDEQLALRLSLIPLVTD--IETYMPQAECEVCGGEGCPACEVSLT 98
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
L + V + DL S+D ++ P AD N I IV+L+KGQ+L L
Sbjct: 99 LSA----EGPGTVYSRDLISSDPKIQP-------ADPN-------IPIVELKKGQKLVLE 140
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNW 178
A A G+G++ KW AGV Y P D H A
Sbjct: 141 AIAHMGYGRDSVKWQ--AGVACGY--------------KNVPVITIENCDACGHCA---- 180
Query: 179 EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNWEAK 238
A+ K VE AGA E+ ++K L L Q+ IN ++
Sbjct: 181 -AECPKGIIRVEEAGARIAED------DLIKCSLCRLCEQVCD------INAIKVDF--Y 225
Query: 239 PNKYFFNVESAGALKPENIVIMGVTVLKQKLS 270
N + F +ES G+ +++ I V+K K S
Sbjct: 226 ENAFVFTMESDGSYTAKDLTINAANVIKGKAS 257
>gi|384248203|gb|EIE21688.1| insert subdomain of RNA polymerase alpha subunit [Coccomyxa
subellipsoidea C-169]
Length = 372
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 124/294 (42%), Gaps = 53/294 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTL 59
+AI+ V + N+++++ E ++ R+GL+P+ D + +D + + +E S+ F L
Sbjct: 114 VAIEHVYIINNTSIIACEVLSHRLGLVPIQVDPNL-----LQDKSGEETATETNSIVFKL 168
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET---DDIL 105
DV+C + V +KS R +P S +++A + G DDIL
Sbjct: 169 DVRCRREGDMMVNE-KVKSGQLRWLPNGSEMPEETNCRYASSQEALLGPAGARLVHDDIL 227
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNS-MRHTLFPKPDEWPKSEY 164
+ K+R GQE+ L A+ +G G EHAKW+P A + P+ + ++ + PK D
Sbjct: 228 LAKMRPGQEIVLEAHCVRGTGAEHAKWSPVATAWYRLQPEVAILQPVVGPKADAL----- 282
Query: 165 SELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRV 224
A F VE +GA + + + QL R
Sbjct: 283 ---------------AAACPGLFTVEGSGASR---------RAVAGDARQHEKQLEKVRR 318
Query: 225 FYVINEAPYNWEAKPNK--YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
E + E + K + F +ES G L P+ + + + VL K L L
Sbjct: 319 MSGEEEWSEHVELRKRKDHFIFTIESTGILAPDQLFLRALDVLAAKCDKLLEHL 372
>gi|444725444|gb|ELW66008.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Tupaia
chinensis]
Length = 346
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQEDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 258
Query: 166 --------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
LD E N + K + Y F+VES G L P
Sbjct: 259 PGVIEVQEVQGKKVARVANPRLDTFSREVFRNEKLKKVVRLARVRDHYIFSVESTGVLPP 318
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + VL K +L
Sbjct: 319 DVLVSEAIKVLMGKCRRFLDEL 340
>gi|403361811|gb|EJY80614.1| DNA-directed RNA polymerase I 40 kDa polypeptide [Oxytricha
trifallax]
Length = 405
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 110/267 (41%), Gaps = 63/267 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD----EVVDRILYSRDCTCVD--FCSECS 54
MAI+ V + N++++ DE +A R+GLIP+ +D E ++ D + + S
Sbjct: 119 MAIEKVNMWQNTSIIPDENLAHRMGLIPIKADPRQFEFHEKSTLENDQGEQQDTYTEDDS 178
Query: 55 VEFTLDVKCVD-------------DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET 101
+ F L V+C D+ + A++ S + +PV ++ + ++
Sbjct: 179 LRFKLHVRCTKKDPRAPVIINNTVDEEKLYNNANVLSGQLKWIPVGNQAQKFGVDGIKPL 238
Query: 102 -DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWP 160
DDILI KLR GQE+ + +KG GK HAKW+P + + PD + +
Sbjct: 239 FDDILIAKLRPGQEIEMELICEKGIGKTHAKWSPVSTAFYRLVPDIKITQDIM------- 291
Query: 161 KSEYSELDETQHEAPYNWE-----------------------AKPNKYF----------- 186
E EL Y+ E +P K+
Sbjct: 292 NEEAVELKNLCPTGVYDIEDLGKKGKRAIVGDVRKCTTCRECIRPEKFRERIDLGKIKDR 351
Query: 187 --FNVESAGALKPENIVIMGVTVLKQK 211
F+VES G L PE +VI + LK+K
Sbjct: 352 FEFHVESVGILPPEVLVIEALKKLKEK 378
>gi|21228260|ref|NP_634182.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Go1]
gi|23822085|sp|Q8PV16.1|RPOD_METMA RecName: Full=DNA-directed RNA polymerase subunit D
gi|20906717|gb|AAM31854.1| DNA-directed RNA polymerase subunit D [Methanosarcina mazei Go1]
Length = 266
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 117/278 (42%), Gaps = 57/278 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV--DFCSECSVEFT 58
+AI++V L N++VL DE +A R+ LIPL +D ++ + +C + C C V T
Sbjct: 41 LAIEYVNLYDNTSVLYDEQLALRLSLIPLVTD--IETYMPQAECEVCGGEGCPACEVSLT 98
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
L + V + DL S+D ++ P AD N I IV+L+KGQ+L L
Sbjct: 99 LSA----EGPGTVYSRDLISSDPKIQP-------ADPN-------IPIVELKKGQKLVLE 140
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNW 178
A A G+G++ KW AGV Y P D H A
Sbjct: 141 AIAHMGYGRDSVKWQ--AGVACGY--------------KNVPVITIENCDACGHCA---- 180
Query: 179 EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNWEAK 238
A+ K VE AGA E+ ++K L L Q+ IN ++
Sbjct: 181 -AECPKGIIRVEEAGARIAED------DLIKCSLCRLCEQVCD------INAIKVDF--Y 225
Query: 239 PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
N + F +ES G+ +++ I V+K K L L
Sbjct: 226 ENAFVFTMESDGSYTAKDLTINAANVIKGKAEELLAIL 263
>gi|395832416|ref|XP_003789267.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Otolemur garnettii]
Length = 346
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 129/293 (44%), Gaps = 56/293 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMMWVPLGNQADLFPEGTIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ KP E +E
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLL-----KPVEGEAAE-- 251
Query: 166 ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVT-VLKQKLSNLQTQL-AHDR 223
EL + S G ++ + I V V+ +L ++ H++
Sbjct: 252 ELSQCF-------------------SPGVIEVQEIQGKKVARVVNPRLDTFSREIFRHEK 292
Query: 224 VFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ ++ A + Y F+VES G L P+ +V + +L K +L
Sbjct: 293 LKKIVQLARVR-----DHYIFSVESTGVLPPDVLVSEAIKILMGKCQRFLDEL 340
>gi|240104023|ref|YP_002960332.1| DNA-directed RNA polymerase subunit D [Thermococcus gammatolerans
EJ3]
gi|239911577|gb|ACS34468.1| DNA-directed RNA polymerase subunit D (rpoD) [Thermococcus
gammatolerans EJ3]
Length = 260
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 104/244 (42%), Gaps = 54/244 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+ +IPLT+ V+R +S D +D ++T+
Sbjct: 41 FAVDEVEFFENDSALFDEIIAHRLAMIPLTTP--VER--FSLDALELD-------DYTVT 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DLKS D V P +I IVKL +GQ+L AY
Sbjct: 90 LSLQAEGPGMVYSGDLKSDDEGVKPANP--------------NIPIVKLAEGQKLTFNAY 135
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE-----LDETQHEA- 174
AK G GK+HAKW P F Y + H PD E +E ++E + E
Sbjct: 136 AKLGRGKDHAKWQP----GFVYYKYLTEIHVSKEVPDWEELKELAERRGLPVEEKKDEII 191
Query: 175 ---------PYNWEAK----------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
P +EA P + F VE+ G L E IV + + +L +K
Sbjct: 192 IKTIKAFYLPRKFEAYEGDKIREEIIPGAFVFTVETNGELPVEEIVSIALKILMRKSDRF 251
Query: 216 QTQL 219
+L
Sbjct: 252 INEL 255
>gi|261333779|emb|CBH16774.1| DNA-directed RNA polymerase, alpha subunit,putative [Trypanosoma
brucei gambiense DAL972]
Length = 337
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCS---ECSVEF 57
A D + +E N V+ DE +A RIGL+PL V + Y D V F + E + F
Sbjct: 77 FAFDRILIEHNDGVVPDELLAHRIGLVPLAGP--VSSMQYITDSASVGFDNLDPERVLLF 134
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRN----RDADMNEYGETDDILIVKLRKGQ 113
LDV R V T + S + P+ + R D + DI++ +L GQ
Sbjct: 135 ELDVTA----KRDVPTTSVYSGHLKWQPIAKQEELAARSEDDRVFLVHPDIVLTRLGPGQ 190
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCF 140
L+LRA A KG G HAKW P A CF
Sbjct: 191 RLKLRAIAIKGIGAVHAKWTPVAA-CF 216
>gi|83282536|ref|XP_729812.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Plasmodium yoelii yoelii 17XNL]
gi|23488700|gb|EAA21377.1| DNA-directed RNA polymerases i and iii 40 kDa polypeptide
[Plasmodium yoelii yoelii]
Length = 286
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 108/258 (41%), Gaps = 52/258 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILY--------SRDCTCVDFCSE 52
+AI+ V + N+ V++DE + R+GLIP D D + Y + +C C
Sbjct: 37 IAIEKVNIFQNTGVIADEILCHRLGLIPFKFD--ADLLNYKDPYEKYNNLNCFC------ 88
Query: 53 CSVEFTLDVKCVDDQTRHVTTAD---LKSTDARVVPVTSRNRDADMNEYGET--DDILIV 107
F L VKC + + S D + P+ + N + D+ILI
Sbjct: 89 ----FKLHVKCNSINNNKNGNENYQCIYSKDLKWCPLNEEQKKKFENNPPKVVEDNILIT 144
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP----DNSMRHTLFPKPDE---WP 160
KL GQE+ L + +KG GK HAKW+P ++ P D + T + K D P
Sbjct: 145 KLGSGQEIELICFLEKGIGKTHAKWSPVCTAVYKMFPSFNFDVHEKFTNYEKKDLVTICP 204
Query: 161 KSEYSELDETQHEAPYN-------------------WEAKPNKYFFNVESAGALKPENIV 201
K+ + +++E+ + N ++ N + F VES G +I
Sbjct: 205 KNVF-DIEESGNLVAKNPLDCSSCRACIEKYPQKITFQKTKNHFIFTVESTGCFPSADIF 263
Query: 202 IMGVTVLKQKLSNLQTQL 219
+ +LK K+ N++ L
Sbjct: 264 KKALNILKVKVINVKEML 281
>gi|409050971|gb|EKM60447.1| hypothetical protein PHACADRAFT_179740 [Phanerochaete carnosa
HHB-10118-sp]
Length = 378
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 76/150 (50%), Gaps = 9/150 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVD-RILYSRDCTCVDFCSECSVEFT 58
+AI+ V + N++V+ DE +A RIGL+PL++D +D R T D ++ F
Sbjct: 99 IAIEHVYVWNNTSVIHDEVLAHRIGLVPLSADPSTLDFRTPTGFGATPND---RNTLVFR 155
Query: 59 LDVKC---VDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-DILIVKLRKGQE 114
L C + ++KS D VP + N G T+ DI++ KLR GQE
Sbjct: 156 LQATCERAPKGSGKEYINDEVKSGDLVWVPQGEQEEVFANNPPGPTNKDIVLAKLRPGQE 215
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
+ + +A KG GKEHAKW+P A + P
Sbjct: 216 IDMELHAIKGVGKEHAKWSPVATASYRLHP 245
>gi|84000223|ref|NP_001033213.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bos taurus]
gi|122143987|sp|Q32L22.1|RPAC1_BOVIN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1
gi|81673907|gb|AAI09804.1| Polymerase (RNA) I polypeptide C, 30kDa [Bos taurus]
gi|296474425|tpg|DAA16540.1| TPA: DNA-directed RNA polymerases I and III subunit RPAC1 [Bos
taurus]
Length = 346
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 111/262 (42%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEGGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V R AD+ G DDIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHRVYTRHMTWVPLGNQADLFPEGAIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 258
Query: 166 --------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
LD E N + K + + F+VES G L P
Sbjct: 259 PGVIEVQEIQGKKVARVANPRLDTFSREVFRNEKLKKVVRLARVRDHFIFSVESTGVLPP 318
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + VL K +L
Sbjct: 319 DVLVSEAIKVLMGKCQRFLDEL 340
>gi|156849157|ref|XP_001647459.1| hypothetical protein Kpol_1018p139 [Vanderwaltozyma polyspora DSM
70294]
gi|156118145|gb|EDO19601.1| hypothetical protein Kpol_1018p139 [Vanderwaltozyma polyspora DSM
70294]
Length = 335
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 103/259 (39%), Gaps = 51/259 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A+++V N++VL DE +A RIGL+PL D + + S F E ++ +L+
Sbjct: 78 VAVEYVYFLNNTSVLQDEVLAHRIGLVPLKVDPDMLSWIDSELPEEEKFTDENTIVLSLN 137
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGE-------------TDDIL 105
VKC + A TD +++ S RD G+ DIL
Sbjct: 138 VKCTMNPD-----APKDCTDPKILYKNSNVYARDLKFEPQGKQVESFANYPVVPANPDIL 192
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP--------------------- 144
+ KLR GQE+ L+A+ G G +HAK++P A + P
Sbjct: 193 LCKLRPGQEISLKAHCILGIGSDHAKFSPVATASYRLMPHINITQPITGEDAKKFQKYFM 252
Query: 145 -------DNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKP 197
DN + + D + + + E N + NVES GA+ P
Sbjct: 253 PGVIGINDNGEAYVKDARKDTVSREVFR---HPEFEGKVKLGRVRNHFIVNVESTGAMTP 309
Query: 198 ENIVIMGVTVLKQKLSNLQ 216
E I V +L+ K L+
Sbjct: 310 EEIFFKSVRILRNKAEYLK 328
>gi|194761112|ref|XP_001962776.1| GF19666 [Drosophila ananassae]
gi|190616473|gb|EDV31997.1| GF19666 [Drosophila ananassae]
Length = 125
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/41 (78%), Positives = 38/41 (92%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYS 41
+AIDWVQLEANSTVLSDEF+A RIGLIPL SD+VV+R+ Y+
Sbjct: 45 LAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYT 85
>gi|88687066|emb|CAJ43894.1| RNA polymerase I subunit RPC40 [Trypanosoma brucei brucei]
Length = 337
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 69/147 (46%), Gaps = 14/147 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCS---ECSVEF 57
A D + +E N V+ DE +A RIGL+PL V + Y D V F + E + F
Sbjct: 77 FAFDRILIEHNDGVVPDELLAHRIGLVPLAGP--VSSMQYITDSASVGFDNLDPERVLLF 134
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRN----RDADMNEYGETDDILIVKLRKGQ 113
LDV R V T + S + P+ + R D + DI++ +L GQ
Sbjct: 135 ELDVTA----KRDVPTTSVYSGHLKWQPIAKQEELAARSEDDRVFLVHPDIVLTRLGPGQ 190
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCF 140
L+LRA A KG G HAKW P A CF
Sbjct: 191 RLKLRAIAIKGIGAVHAKWTPVAA-CF 216
>gi|50418823|ref|XP_457932.1| DEHA2C05654p [Debaryomyces hansenii CBS767]
gi|49653598|emb|CAG85988.1| DEHA2C05654p [Debaryomyces hansenii CBS767]
Length = 335
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 108/257 (42%), Gaps = 47/257 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A + V + N++V+ DE +A RIGLIPL D + + F E ++ +LD
Sbjct: 79 VAAETVYVFNNTSVIQDEVLAHRIGLIPLKVDPDTLTWIDTAQDEKDRFTDENTIVMSLD 138
Query: 61 VKCVDD--------------QTRHVTTADLK-STDARVVPVTSRNRDADMNEYGETDDIL 105
V C + + HV DLK R + + N + DIL
Sbjct: 139 VSCTKNPHPPQGSTDPKELYRNSHVYAKDLKFEPQGRQLEIFKNNPVVAADP-----DIL 193
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FP 154
+ KLR QE+ LRA+ G G +HAK++P A + P ++ + FP
Sbjct: 194 LAKLRPNQEISLRAHCILGVGSDHAKFSPVATASYRLMPVITITEPIKGESGKRFQKCFP 253
Query: 155 -------KPDEW----PKSEYSELDETQHEAPYNWEAKPNK----YFFNVESAGALKPEN 199
K E + + + +HE +N + K + + FNVES GA+ PE
Sbjct: 254 SGVIDINKNGEAVVKDSRKDTVSREVLRHEE-FNGKVKLGRKRDHFIFNVESTGAMSPEE 312
Query: 200 IVIMGVTVLKQKLSNLQ 216
I V VLK K L+
Sbjct: 313 IFFKSVRVLKNKAEYLR 329
>gi|332234165|ref|XP_003266281.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Nomascus leucogenys]
Length = 346
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 258
Query: 166 --------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
LD E N + K + Y F+VES G L P
Sbjct: 259 PGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPP 318
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + VL K +L
Sbjct: 319 DVLVSEAIKVLMGKCRRFLDEL 340
>gi|14198113|gb|AAH08118.1| POLR1C protein, partial [Homo sapiens]
Length = 338
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 79 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 135
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 136 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDIL 190
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 191 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 250
Query: 166 --------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
LD E N + K + Y F+VES G L P
Sbjct: 251 PGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPP 310
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + VL K +L
Sbjct: 311 DVLVSEAIKVLMGKCRRFLDEL 332
>gi|354492493|ref|XP_003508382.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cricetulus griseus]
Length = 302
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 47/260 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 43 MAVEKVLVYNNTSIVQDEILAHRLGLIPILADP---RLFEYRNPGEEEGTEIDTLQFRLQ 99
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNRDADMNEYGET----DDILIV 107
V+C + ++D + + VP+ ++ AD+ G DDILI
Sbjct: 100 VRCTKNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQ---ADVFPEGTIRPVHDDILIA 156
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE--------- 158
+LR GQE+ L + KG GK+HAK++P A + PD ++ + + E
Sbjct: 157 QLRPGQEIDLVMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPG 216
Query: 159 -----------WPKSEYSELDETQHEAPYNWEAKP--------NKYFFNVESAGALKPEN 199
+ + LD E N + K + Y F+VES G L P+
Sbjct: 217 VIEVQEVQGQKLARVANARLDTFSREIFRNEKLKKAVRLARVRDHYIFSVESTGVLPPDV 276
Query: 200 IVIMGVTVLKQKLSNLQTQL 219
+V + +L K +L
Sbjct: 277 LVSEAIKILMGKCRRFLDEL 296
>gi|42560246|ref|NP_976035.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Homo sapiens]
gi|332824144|ref|XP_001136605.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Pan troglodytes]
gi|397526795|ref|XP_003833302.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Pan paniscus]
gi|426353284|ref|XP_004044127.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Gorilla gorilla gorilla]
gi|3914807|sp|O15160.1|RPAC1_HUMAN RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1; AltName: Full=AC40;
AltName: Full=DNA-directed RNA polymerases I and III 40
kDa polypeptide; Short=RPA40; AltName: Full=RPA39;
AltName: Full=RPC40
gi|2266929|gb|AAC14354.1| RNA polymerase I subunit hRPA39 [Homo sapiens]
gi|14250788|gb|AAH08863.1| Polymerase (RNA) I polypeptide C, 30kDa [Homo sapiens]
gi|119624610|gb|EAX04205.1| polymerase (RNA) I polypeptide C, 30kDa, isoform CRA_b [Homo
sapiens]
gi|261858766|dbj|BAI45905.1| polymerase (RNA) I polypeptide C, 30kDa [synthetic construct]
gi|312152392|gb|ADQ32708.1| polymerase (RNA) I polypeptide C, 30kDa [synthetic construct]
gi|410212776|gb|JAA03607.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410248096|gb|JAA12015.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410296802|gb|JAA27001.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
gi|410337835|gb|JAA37864.1| polymerase (RNA) I polypeptide C, 30kDa [Pan troglodytes]
Length = 346
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 258
Query: 166 --------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
LD E N + K + Y F+VES G L P
Sbjct: 259 PGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPP 318
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + VL K +L
Sbjct: 319 DVLVSEAIKVLMGKCRRFLDEL 340
>gi|405120194|gb|AFR94965.1| rpa42 [Cryptococcus neoformans var. grubii H99]
Length = 350
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 118/271 (43%), Gaps = 46/271 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++++ DE + R+GL+PL D R L R +V F L
Sbjct: 85 VAIEEVYVWNNTSIMQDEVLCHRVGLVPLKIDP---RSLRYRPSANSQPHEHDTVVFDLR 141
Query: 61 VKC-----VD----DQTRHVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLR 110
V+C VD D + +++ S + VP + + DDIL+VKLR
Sbjct: 142 VRCDRRPNVDRSETDPKKMYFDSNVYSGMLKWVPSGDQKKKFKGKAPRPVNDDILLVKLR 201
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPKPD-- 157
GQ++ L +A+KG G +HAK++P A + P +R + FP P
Sbjct: 202 PGQQVDLHCFARKGVGADHAKFSPVATASYRLLPHIILRGPIPKEHQQKFKGCFP-PGVI 260
Query: 158 EWPKSEYSE---------LDETQHEAPYNWEAKP--------NKYFFNVESAGALKPENI 200
E K E E D E + E + + + FNVESAG PE +
Sbjct: 261 EIEKDESGEDQCVVKNPRKDTVSREVLRHPEFQDLVQLARIRDHFIFNVESAGQYSPEEL 320
Query: 201 VIMGVTVLKQKLSNLQTQLAHDRVFYVINEA 231
V + +L K+ +++ L D++F +A
Sbjct: 321 VPEAIKILLGKIKDVEEGL--DKLFATDGQA 349
>gi|344253232|gb|EGW09336.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Cricetulus
griseus]
Length = 282
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 47/260 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 23 MAVEKVLVYNNTSIVQDEILAHRLGLIPILADP---RLFEYRNPGEEEGTEIDTLQFRLQ 79
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNRDADMNEYGET----DDILIV 107
V+C + ++D + + VP+ ++ AD+ G DDILI
Sbjct: 80 VRCTKNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQ---ADVFPEGTIRPVHDDILIA 136
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE--------- 158
+LR GQE+ L + KG GK+HAK++P A + PD ++ + + E
Sbjct: 137 QLRPGQEIDLVMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPG 196
Query: 159 -----------WPKSEYSELDETQHEAPYNWEAKP--------NKYFFNVESAGALKPEN 199
+ + LD E N + K + Y F+VES G L P+
Sbjct: 197 VIEVQEVQGQKLARVANARLDTFSREIFRNEKLKKAVRLARVRDHYIFSVESTGVLPPDV 256
Query: 200 IVIMGVTVLKQKLSNLQTQL 219
+V + +L K +L
Sbjct: 257 LVSEAIKILMGKCRRFLDEL 276
>gi|219852957|ref|YP_002467389.1| DNA-directed RNA polymerase subunit D [Methanosphaerula palustris
E1-9c]
gi|219547216|gb|ACL17666.1| RNA polymerase insert [Methanosphaerula palustris E1-9c]
Length = 273
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 21/136 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTL 59
+AI+ +++ N++ L DE +A RIGL+PL ++ D + + CTC C CS +TL
Sbjct: 39 LAIEDIKIYDNTSALFDEMLAHRIGLVPLKTNS--DLYVSADRCTCEGAGCDRCSTMYTL 96
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V + V + DL +D VPV + I IVKL KGQ++ + A
Sbjct: 97 SV----EGPGMVYSRDLIPSDPEAVPVDEK--------------IPIVKLEKGQKVVIEA 138
Query: 120 YAKKGFGKEHAKWNPT 135
A+ GK HAKW PT
Sbjct: 139 RAEMNLGKVHAKWQPT 154
>gi|366988647|ref|XP_003674091.1| hypothetical protein NCAS_0A11520 [Naumovozyma castellii CBS 4309]
gi|342299954|emb|CCC67710.1| hypothetical protein NCAS_0A11520 [Naumovozyma castellii CBS 4309]
Length = 335
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 113/265 (42%), Gaps = 62/265 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
+A ++V N++V+ DE +A RIGLIPL D +L D D F ++
Sbjct: 78 VAAEYVYFLNNTSVIQDEVLAHRIGLIPLKVDP---DLLTWVDNELPDEEKFNDTNTIVL 134
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMN---------EYGET------D 102
TL+VKC TR+ A +TD +++ S +D+ + T
Sbjct: 135 TLNVKC----TRN-PDAPKDATDPKILYRNSSVYASDLKFEPQGKQIETFAGTPVVPCDQ 189
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKS 162
DIL+ KLR GQE+ LRA+ G G +HAK++P + + P H KP + +
Sbjct: 190 DILLAKLRPGQEISLRAHCILGTGGDHAKFSPVSTASYRLLP-----HINITKPIKGELA 244
Query: 163 EYSE---------LDETQHEA------------------PYNWEAKPNK----YFFNVES 191
E + +D EA +N + K + + FNVES
Sbjct: 245 EKFQKCFLPGVIGIDNASGEAFVKDARKDTVSREVLRHEEFNDKVKLGRIRDHFIFNVES 304
Query: 192 AGALKPENIVIMGVTVLKQKLSNLQ 216
GA+ PE I V +LK K L+
Sbjct: 305 TGAMTPEEIFFKSVRILKNKAEYLK 329
>gi|58266722|ref|XP_570517.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110920|ref|XP_775924.1| hypothetical protein CNBD3310 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258590|gb|EAL21277.1| hypothetical protein CNBD3310 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226750|gb|AAW43210.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 350
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 118/271 (43%), Gaps = 46/271 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++++ DE + R+GL+PL D R L R +V F L
Sbjct: 85 VAIEEVYVWNNTSIMQDEVLCHRVGLVPLKIDP---RSLRYRPSANSQPHEHDTVVFDLR 141
Query: 61 VKC-----VD----DQTRHVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLR 110
V+C VD D + +++ S + VP + + DDIL+VKLR
Sbjct: 142 VRCDRRPNVDRSETDPKKMYFDSNVYSGMLKWVPSGDQKKKFKGKAPRPVNDDILLVKLR 201
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPKPD-- 157
GQ++ L +A+KG G +HAK++P A + P +R + FP P
Sbjct: 202 PGQQVDLHCFARKGVGADHAKFSPVATASYRLLPHIILRGPIPKEHQQKFKGCFP-PGVI 260
Query: 158 EWPKSEYSE---------LDETQHEAPYNWEAKP--------NKYFFNVESAGALKPENI 200
E K E E D E + E + + + FNVESAG PE +
Sbjct: 261 EIEKDENGEDQCVVKNPRKDTVSREVLRHPEFQDLVQLARIRDHFIFNVESAGQYSPEEL 320
Query: 201 VIMGVTVLKQKLSNLQTQLAHDRVFYVINEA 231
V + +L K+ +++ L D++F +A
Sbjct: 321 VPEAIKILLGKIKDVEEGL--DKLFATEGQA 349
>gi|367015666|ref|XP_003682332.1| hypothetical protein TDEL_0F03100 [Torulaspora delbrueckii]
gi|359749994|emb|CCE93121.1| hypothetical protein TDEL_0F03100 [Torulaspora delbrueckii]
Length = 335
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 109/255 (42%), Gaps = 42/255 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
+A + V N++V+ DE +A RIGL+PL D +L D T + F E ++
Sbjct: 78 LAPEHVYFLNNTSVIQDEVLAHRIGLVPLKVDP---DMLTWVDSTLPEEERFTDENTIVL 134
Query: 58 TLDVKCVDDQTRHVTTADLK------STDARVVPVTSRNRDADMNE----YGETDDILIV 107
TL+V C + D K S A + + R A++ DIL+
Sbjct: 135 TLNVTCTRNPDAPKDCTDPKILYRNSSVYAHDLKFEPQGRQAELFAKCPVVPADPDILLA 194
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS-- 165
KLR GQE+ LRA+ G G +HAK++P A + P ++ + + + + +S
Sbjct: 195 KLRPGQEISLRAHCILGVGGDHAKFSPVATASYRLLPHINITKPITGESAKKFQKCFSPG 254
Query: 166 --ELDETQHEAPYNWEAKP----------------------NKYFFNVESAGALKPENIV 201
++DE+ EA + + + FNVES GA+ PE I
Sbjct: 255 VIDIDESTGEAVVKDARRDTVSREVLRHEEFADSVKLGRVRDHFIFNVESTGAMTPEEIF 314
Query: 202 IMGVTVLKQKLSNLQ 216
V +LK K L+
Sbjct: 315 FKSVRILKNKAEYLK 329
>gi|57965352|ref|XP_561116.1| Anopheles gambiae str. PEST AGAP012796-PA [Anopheles gambiae str.
PEST]
gi|55247027|gb|EAL42262.1| AGAP012796-PA [Anopheles gambiae str. PEST]
Length = 234
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 15/156 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTL 59
MAI+ V + N++++ D +A R+GLIPL +D ++ D S ++EF L
Sbjct: 78 MAIEKVHIYNNTSIIQDGGLAHRLGLIPLRADPR----MFEYKANETDPPSALDTLEFEL 133
Query: 60 DVKCV--DDQTRHVTTAD-------LKSTDARVVPVTSRNRDADMNEYGETDD-ILIVKL 109
VKC + + VT + + S + VP+ ++ G DD ILI K+
Sbjct: 134 KVKCTRKNKDSTEVTNNENMYKNHSIYSGQIKWVPIGNQATIYTEATVGPIDDDILISKM 193
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
R G E ++ +A KG GK+HAK++P A V + PD
Sbjct: 194 RPGHEFDIKLFAVKGVGKDHAKFSPVATVSYRLLPD 229
>gi|326915378|ref|XP_003203995.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like, partial [Meleagris gallopavo]
Length = 266
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 112/259 (43%), Gaps = 45/259 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 7 MAVEKVFVYNNTSIVQDEILAHRLGLIPIRADP---RLFEYRNQGDEEGTEIDTLQFQLK 63
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSRN---RDADMNEYGETDDILIVK 108
+KC + ++D + S VP+ ++ DAD DDILI
Sbjct: 64 IKCSRNPQAAKESSDPNELYFNHKVYSKHMTWVPLGNQTDLFPDADFRPV--HDDILIAL 121
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS--- 165
LR GQE+ + + KG GK+HAK++P A + PD ++ + + E + +S
Sbjct: 122 LRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPIEDEAAETLQKCFSPGV 181
Query: 166 -----------------ELDE-----TQHEAPYN---WEAKPNKYFFNVESAGALKPENI 200
LD +HE N N Y F+VES G L P+ +
Sbjct: 182 IEIQNIKGKKVARVANARLDTFSREVFRHEGLKNLVRLARVRNHYIFSVESTGILPPDVL 241
Query: 201 VIMGVTVLKQKLSNLQTQL 219
V + +L K +L
Sbjct: 242 VTEAIKILMGKCQRFLNEL 260
>gi|291396258|ref|XP_002714740.1| PREDICTED: RNA polymerase I subunit [Oryctolagus cuniculus]
Length = 358
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 99 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDDEGTEIDTLQFRLQ 155
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 156 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDIL 210
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 211 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLAPIEGEAAEELSQCFS 270
Query: 166 --------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
LD E N + K + Y F+VES G L P
Sbjct: 271 PGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKLVRLARVRDHYIFSVESTGVLPP 330
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + VL K +L
Sbjct: 331 DVLVSEAIKVLMGKCRRFLDEL 352
>gi|11499863|ref|NP_071107.1| DNA-directed RNA polymerase subunit D [Archaeoglobus fulgidus DSM
4304]
gi|3122769|sp|O28002.1|RPOD_ARCFU RecName: Full=DNA-directed RNA polymerase subunit D
gi|2648239|gb|AAB88973.1| DNA-directed RNA polymerase, subunit D (rpoD) [Archaeoglobus
fulgidus DSM 4304]
Length = 264
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 21/146 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV-DFCSECSVEFTL 59
MA+D+V + NS+ DE IA R+ ++P+ + +DR +C+C + C C + F L
Sbjct: 41 MAVDYVDIYLNSSYFYDEVIAHRLAMLPIKT--YLDRFNMQSECSCGGEGCPNCQISFRL 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+V + + V + D S D VV D+I +++L +GQ+L L A
Sbjct: 99 NV----EGPKVVYSGDFISDDPDVV--------------FAIDNIPVLELFEGQQLMLEA 140
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPD 145
A+ G G+EHAK+ P + ++ P+
Sbjct: 141 VARLGTGREHAKFQPVSVCVYKIIPE 166
>gi|348538459|ref|XP_003456708.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Oreochromis niloticus]
Length = 351
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 114/261 (43%), Gaps = 45/261 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC----SVE 56
MA++ V + +N++++ DE +A R+GLIP+ +D R+ R+ E +++
Sbjct: 88 MAMEKVFIYSNTSIVQDEVLAHRLGLIPIKADP---RLFEYRNTGEESAEEEGSEIDTIQ 144
Query: 57 FTLDVKCVDDQTRHVTTADLK---------STDARVVPVTSR-NRDADMNEYGETDDILI 106
L +KC + ++D + S D + VP+ ++ + AD DDILI
Sbjct: 145 LQLKIKCSRNPRASKDSSDPRELYLNHMVYSKDIKWVPIGNQADVFADCCIGPVHDDILI 204
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEY-- 164
+LR GQEL + + KG GK+HAK++P A + P+ ++ + + E K +
Sbjct: 205 AQLRPGQELDIVMHCVKGIGKDHAKFSPVATASYRLLPEITLLEVVEGEKAERLKQCFSR 264
Query: 165 ------------------SELDETQHEAPYNWEAK--------PNKYFFNVESAGALKPE 198
S LD E + + K + + F VES G L P+
Sbjct: 265 GVIDLEDINGTKVAKVVNSRLDTCSREVLRHSDLKNVVKLGRVRDHFIFTVESTGILPPD 324
Query: 199 NIVIMGVTVLKQKLSNLQTQL 219
+V + VL K +L
Sbjct: 325 VLVTEAIKVLMAKCQRFLNEL 345
>gi|50740586|ref|XP_419502.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 2 [Gallus gallus]
Length = 346
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 113/262 (43%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVFVYNNTSIVQDEILAHRLGLIPIRADP---RLFEYRNQGDEEGTEIDTLQFQLK 143
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNR---DADMNEYGETDDILIVK 108
+KC + ++D + S VP+ ++ DAD DDILI
Sbjct: 144 IKCSRNPQAAKESSDPNELYFNHKVYSKHMTWVPLGNQTDLFPDADFRPV--HDDILIAL 201
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKS------ 162
LR GQE+ + + KG GK+HAK++P A + PD ++ L P DE ++
Sbjct: 202 LRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITL---LQPVEDEAAETLQKCFS 258
Query: 163 -----------------EYSELDE-----TQHEAPYN---WEAKPNKYFFNVESAGALKP 197
+ LD +HE N N Y F+VES G L P
Sbjct: 259 PGVIEIQNIKGKKVARVANARLDTFSREVFRHEGLKNLVRLARVRNHYIFSVESTGILPP 318
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + +L K +L
Sbjct: 319 DVLVTEAIKILMGKCQRFLNEL 340
>gi|321257697|ref|XP_003193678.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide (AC40)
[Cryptococcus gattii WM276]
gi|317460148|gb|ADV21891.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide (AC40)
[Cryptococcus gattii WM276]
Length = 350
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/270 (27%), Positives = 117/270 (43%), Gaps = 44/270 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++++ DE + R+GL+PL D R L R +V F L
Sbjct: 85 VAIEEVYVWNNTSIMQDEVLCHRVGLVPLKIDP---RSLRYRPSANSQPHEHDTVVFDLR 141
Query: 61 VKC-----VD----DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLR 110
V+C VD D + +++ S + VP + + DDIL+VKLR
Sbjct: 142 VRCDRRPNVDRSEKDPKKMYFDSNVYSGMLKWVPSGDQKKKFKGKAPKPVNDDILLVKLR 201
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPKP-DE 158
GQ++ L +A+KG G +HAK++P A + P +R + FP E
Sbjct: 202 PGQQVDLHCFARKGVGADHAKFSPVATASYRLLPHIILRGPIPKEHQQKFKGCFPPGVIE 261
Query: 159 WPKSEYSE---------LDETQHEAPYNWEAKP--------NKYFFNVESAGALKPENIV 201
K E E D E + E + + + FNVESAG PE +V
Sbjct: 262 IEKDESGEDQCVVKNPRKDTVSREVLRHPEFQDIVQLARIRDHFIFNVESAGQYSPEELV 321
Query: 202 IMGVTVLKQKLSNLQTQLAHDRVFYVINEA 231
+ +L K+ +++ L D++F +A
Sbjct: 322 PEAIKILLGKIKDVEDGL--DKLFTTEGQA 349
>gi|403261372|ref|XP_003923097.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Saimiri boliviensis boliviensis]
Length = 346
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 113/260 (43%), Gaps = 47/260 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNRDADMNEYGET----DDILIV 107
V+C + ++D + + +P+ ++ AD+ G DDILI
Sbjct: 144 VRCTRNPHAAKDSSDPNELYMNHKVYTRHMTWIPLGNQ---ADLFPEGTIRPVHDDILIA 200
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS-- 165
+LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 201 QLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPG 260
Query: 166 ------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKPEN 199
LD E N + K + Y F+VES G L P+
Sbjct: 261 VIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKAVRLARVRDHYIFSVESTGVLPPDV 320
Query: 200 IVIMGVTVLKQKLSNLQTQL 219
+V + VL K +L
Sbjct: 321 LVSEAIKVLMGKCRRFLDEL 340
>gi|341888283|gb|EGT44218.1| hypothetical protein CAEBREN_24695 [Caenorhabditis brenneri]
Length = 365
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 122/298 (40%), Gaps = 52/298 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE---- 56
MA++ + L N++V+ DE + R+GL+PL D + + + +C E
Sbjct: 93 MALEKIYLYQNTSVIQDEVLCHRLGLLPLRVDPRAFQFPTEKVVGINEKGVDCDEEPEGD 152
Query: 57 ------FTLDVKCVDDQTRHVTTADLK------STDARV---VPVTSRNRDADMNEYGE- 100
F ++V C ++ T D K S +R +P+ ++ +
Sbjct: 153 PTRNLIFKINVACTKNRNAANGTTDPKQLYHHSSVYSRAFEWIPIGNQKEGYTKQNKPKM 212
Query: 101 -TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW 159
+DDIL+ KLR GQE+ +A KG G++HAK++P A + P + + + E
Sbjct: 213 VSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAER 272
Query: 160 PKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+S +S E E K NK V+ A A
Sbjct: 273 LQSVFS-------EGVIGIEKKGNKKIAVVKDARA-----------------------DT 302
Query: 220 AHDRVFYVINEAPYNWEAKPNKYF-FNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
VF + A K ++F F+VES GALK +V+ V++ K +L+ Q+
Sbjct: 303 CSRNVFRHEDLAQVVHLGKNKQHFIFSVESTGALKASELVVEACKVMESKCRSLRKQI 360
>gi|189203213|ref|XP_001937942.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985041|gb|EDU50529.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 376
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 27/169 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL--YSR----DCTCVDFCSECS 54
+AI+ V + N++++ DE +A R+GLIPL D R + Y++ D SE +
Sbjct: 88 LAIEDVYIYQNTSIIQDEVLAHRLGLIPLCGDRATLRRMKWYAKPTDEDEGSGGPTSENT 147
Query: 55 VEFTLDVKCV-------------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNE---- 97
V TL KC D R ++ + D R P + N+ +++E
Sbjct: 148 VALTLKTKCTWQPGGVARAVAGETDPDRLYVGHNVYAKDMRFEP--NGNQAENLSEAEGK 205
Query: 98 --YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI K+R GQEL +R +A KG G++HAK++P A + P
Sbjct: 206 HIRSTNPDILICKMRPGQELEIRMHAIKGIGQDHAKFSPVATASYRLMP 254
>gi|380022855|ref|XP_003695251.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and
III subunit RPAC1-like [Apis florea]
Length = 587
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 114/271 (42%), Gaps = 56/271 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
MAI+ V + N++++ DE +A R+GLIPL +D R+ T D + ++ +
Sbjct: 80 MAIEKVYIVNNTSLIQDEVLAHRLGLIPLRAD---PRLFEYPSSTAKDQDEVSDQDTLRY 136
Query: 58 TLDVKCV------DDQTR---HVTTADLKSTDARVVPVTSRNRDADMNEYGET------D 102
L + C D R +++ S D + VP+ A++ G +
Sbjct: 137 ELKISCTWNSQAPKDSRRTNDMYRNSNVYSRDIKWVPI---GHQAELYPRGTEQLGVLEN 193
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKS 162
DILI K+R GQE+ +A KG GK+HAK++P A + PD + + + + K+
Sbjct: 194 DILICKMRPGQEIHAFMHAVKGIGKDHAKFSPVATASYRLLPDIQIIKPVKGEMADRLKN 253
Query: 163 EYS----ELDETQHEAPYNWEAK----------------------------PNKYFFNVE 190
+S E+ E + P + EA+ N F +E
Sbjct: 254 CFSIGVIEVIENKPGDPDSREARVKNPRYDSCSRNVFQHEDLKGCIRLSRIRNHIIFTIE 313
Query: 191 SAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
S G L P + + + +LK K +L H
Sbjct: 314 SVGTLLPSVLFVEAIKILKGKCKTFLEELEH 344
>gi|33086616|gb|AAP92620.1| Ac2-127 [Rattus norvegicus]
Length = 260
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 113/262 (43%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 1 MAVEKVLVYNNTSIVQDEILAHRLGLIPILADP---RLFEYRNPGEEEGTEIDTLQFRLQ 57
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ + A S+D + V + AD+ G DDIL
Sbjct: 58 VRC----TRNPSAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTVRPVHDDIL 112
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 113 IAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSQCFS 172
Query: 166 --------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
LD E + + K + Y F+VES G L P
Sbjct: 173 PGVIAVQEVQGKKVARVANARLDTFSREIFRHEKLKKAVRLARVRDHYIFSVESTGVLPP 232
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + +L K +L
Sbjct: 233 DVLVSEAIKILMGKCRRFLDEL 254
>gi|324559772|gb|ADY49840.1| DNA-directed RNA polymerase II subunit RPB3, partial [Ascaris
suum]
Length = 69
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT--CVDFCSECSVEFT 58
MAIDWVQ+EAN++VL DEFIA R+GLIPLTS+ VVD+ YSR + C V F
Sbjct: 1 MAIDWVQIEANTSVLHDEFIAHRMGLIPLTSNNVVDKFQYSRGFGKEHAKWNPTCGVAFE 60
Query: 59 LDVKCVDDQTRH 70
D D+ RH
Sbjct: 61 YD---PDNALRH 69
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 26/28 (92%)
Query: 123 KGFGKEHAKWNPTAGVCFEYDPDNSMRH 150
+GFGKEHAKWNPT GV FEYDPDN++RH
Sbjct: 42 RGFGKEHAKWNPTCGVAFEYDPDNALRH 69
>gi|149069364|gb|EDM18805.1| RNA polymerase 1-1, isoform CRA_b [Rattus norvegicus]
Length = 291
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 113/262 (43%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 32 MAVEKVLVYNNTSIVQDEILAHRLGLIPILADP---RLFEYRNPGEEEGTEIDTLQFRLQ 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ + A S+D + V + AD+ G DDIL
Sbjct: 89 VRC----TRNPSAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTVRPVHDDIL 143
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 144 IAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSQCFS 203
Query: 166 --------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
LD E + + K + Y F+VES G L P
Sbjct: 204 PGVIAVQEVQGKKVARVANARLDTFSREIFRHEKLKKAVRLARVRDHYIFSVESTGVLPP 263
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + +L K +L
Sbjct: 264 DVLVSEAIKILMGKCRRFLDEL 285
>gi|149247366|ref|XP_001528095.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
gi|146448049|gb|EDK42437.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Lodderomyces elongisporus NRRL YB-4239]
Length = 336
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 108/274 (39%), Gaps = 81/274 (29%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV----VDRIL-----YSRDCTCVDFCS 51
+A + V L N++V+ DE +A RIGLIPL D VD+ L Y+ D T V
Sbjct: 80 VAAETVYLYMNTSVIQDEVLAHRIGLIPLKVDPDSLTWVDKKLDESERYTEDNTIV---- 135
Query: 52 ECSVEFTLDVKCVDD--------------QTRHVTTADLK----------STDARVVPVT 87
TLDV C + + HV DLK D+ VVP
Sbjct: 136 -----LTLDVACSKNLQAPKNSTDPKEMYKNSHVYARDLKFEPQGSQLEKYKDSPVVPCD 190
Query: 88 SRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNS 147
DIL+ KLR GQE+ +R + G G +HAK++P A + P
Sbjct: 191 P--------------DILLAKLRPGQEISMRVHCILGLGCDHAKFSPVATASYRLLPVID 236
Query: 148 MRHTL-----------FP------KPDEWPKSEYSELDETQHEAPYNWE-------AKPN 183
++ + FP K D E + D E + E +
Sbjct: 237 IKEPITGDLARKFQKCFPPGVIGIKDDGEAYVEDARKDTVSREVLRHPEFEGKVKLGRQR 296
Query: 184 KYF-FNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
YF FNVES GA+ P I + + VLK K L+
Sbjct: 297 DYFIFNVESTGAMPPCEIFLKSIRVLKSKAEYLR 330
>gi|409096145|ref|ZP_11216169.1| DNA-directed RNA polymerase subunit D [Thermococcus zilligii AN1]
Length = 260
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 101/244 (41%), Gaps = 54/244 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+ +IPLT+ +S D +D ++T+
Sbjct: 41 FAVDEVEFFENDSALFDEIIAHRLAMIPLTTP----YTRFSLDSLELD-------DYTVT 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DLKS D + P +I IVKL +GQ+L L AY
Sbjct: 90 LSLQAEGPGVVYSGDLKSDDPEIKPANP--------------NIPIVKLAEGQKLALNAY 135
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD-----EWPKSEYSELDETQHE-- 173
A+ G GK+HAKW P F Y + H P+ E K ++ET+ E
Sbjct: 136 ARLGRGKDHAKWQP----GFVYYKYLTRIHVSKEVPEWKELKELAKKRGLPVEETEKELV 191
Query: 174 --------APYNWEAK----------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
P +EA PN + F VES G L IV + +L +K
Sbjct: 192 IETTKSFYLPRKFEAYEGEKIREEVVPNTFVFTVESNGELPVGEIVSTALKILMRKSDRF 251
Query: 216 QTQL 219
+L
Sbjct: 252 INEL 255
>gi|296198261|ref|XP_002746623.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Callithrix jacchus]
Length = 346
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 113/260 (43%), Gaps = 47/260 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNRDADMNEYGET----DDILIV 107
V+C + ++D + + +P+ ++ AD+ G DDILI
Sbjct: 144 VRCTRNPHAAKDSSDPNELYMNHKVYTRHMTWIPLGNQ---ADLFPEGTIRPVHDDILIA 200
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS-- 165
+LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 201 QLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPG 260
Query: 166 ------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKPEN 199
LD E N + K + Y F+VES G L P+
Sbjct: 261 VVEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKAVRLARVRDHYIFSVESTGVLPPDV 320
Query: 200 IVIMGVTVLKQKLSNLQTQL 219
+V + VL K +L
Sbjct: 321 LVSEAIKVLMGKCRRFLDEL 340
>gi|355561732|gb|EHH18364.1| hypothetical protein EGK_14941 [Macaca mulatta]
gi|355763424|gb|EHH62170.1| hypothetical protein EGM_20381 [Macaca fascicularis]
gi|380818186|gb|AFE80967.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Macaca
mulatta]
gi|384950476|gb|AFI38843.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Macaca
mulatta]
Length = 346
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 112/263 (42%), Gaps = 53/263 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ D ++ F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEDGTEIDTLRFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 258
Query: 166 ----ELDETQHEAPYNWEAKP-------------------------NKYFFNVESAGALK 196
E+ E Q + A P + Y F+VES G L
Sbjct: 259 PGVIEVQEVQGKKVARV-ANPRLDTFSREIFRHEKLKKVVRLARVRDHYIFSVESTGVLP 317
Query: 197 PENIVIMGVTVLKQKLSNLQTQL 219
P+ +V + VL K +L
Sbjct: 318 PDVLVSEAIKVLMGKCRRFLDEL 340
>gi|390960760|ref|YP_006424594.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. CL1]
gi|390519068|gb|AFL94800.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. CL1]
Length = 260
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 101/244 (41%), Gaps = 54/244 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+ +IPLT+ +R +S D +D ++T+
Sbjct: 41 FAVDEVEFFENDSALFDEIIAHRLAMIPLTTP--AER--FSLDALELD-------DYTVT 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DL+S+D + P DI IVKL +GQ L AY
Sbjct: 90 LSLEAEGPGMVYSGDLRSSDEAIKPANP--------------DIPIVKLAEGQRLTFNAY 135
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE-----LDETQHE-- 173
A+ G GK+HAKW P F Y + H PD E +E ++ET E
Sbjct: 136 ARLGRGKDHAKWQP----GFVYYKYLTRIHVSKEVPDWEELKELAERRGLPVEETGEELI 191
Query: 174 --------APYNWEAK----------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
P +E P + F VE+ G L E IV + +L +K
Sbjct: 192 ITTIKAFYLPRKFEGYEGDKIREEVVPGAFVFTVETNGELPVEEIVATALKILMRKSDRF 251
Query: 216 QTQL 219
+L
Sbjct: 252 INEL 255
>gi|449283222|gb|EMC89903.1| DNA-directed RNA polymerases I and III subunit RPAC1, partial
[Columba livia]
Length = 323
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 45/259 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 64 MAVEKVFVYNNTSIVQDEILAHRLGLIPIRADP---RLFEYRNQGDEEGTEIDTLQFQLK 120
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNR---DADMNEYGETDDILIVK 108
+KC + ++D + S VP+ ++ DAD DDILI
Sbjct: 121 IKCSRNPQAAKESSDPNELYFNHKVYSKHMTWVPLGNQTDLFPDADFRPV--HDDILIAL 178
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS--- 165
LR GQE+ + + KG GK+HAK++P A + PD ++ + + E + +S
Sbjct: 179 LRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPIEDEAAETLQKCFSPGV 238
Query: 166 -----------------ELDETQHEAPYNWEAK--------PNKYFFNVESAGALKPENI 200
LD E + K N Y F+VES G L P+ +
Sbjct: 239 IEIQKIKGKKVARVANARLDTFSREVFRHENLKNLVRLARVRNHYIFSVESTGILPPDVL 298
Query: 201 VIMGVTVLKQKLSNLQTQL 219
V + +L K +L
Sbjct: 299 VSEAIKILMGKCQRFLNEL 317
>gi|350586678|ref|XP_003482243.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Sus scrofa]
Length = 346
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 110/262 (41%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNLGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ + A S+D + V + AD+ G DDIL
Sbjct: 144 VRC----TRNPSAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L KG GK+HAK++P A + PD ++ + E +S
Sbjct: 199 IAQLRPGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAAEELSRCFS 258
Query: 166 --------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
LD E N K + Y F+VES G L P
Sbjct: 259 PGVIEVQEIQGKKVARVANPRLDTFSREVFRNDMLKKVVRLARVRDHYIFSVESTGVLPP 318
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + VL K +L
Sbjct: 319 DVLVSEAIKVLMGKCRRFLDEL 340
>gi|56605738|ref|NP_001008331.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Rattus
norvegicus]
gi|55778316|gb|AAH86597.1| Polymerase (RNA) I polypeptide C [Rattus norvegicus]
gi|149069363|gb|EDM18804.1| RNA polymerase 1-1, isoform CRA_a [Rattus norvegicus]
Length = 346
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 113/262 (43%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPILADP---RLFEYRNPGEEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ + A S+D + V + AD+ G DDIL
Sbjct: 144 VRC----TRNPSAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTVRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 199 IAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSQCFS 258
Query: 166 --------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
LD E + + K + Y F+VES G L P
Sbjct: 259 PGVIAVQEVQGKKVARVANARLDTFSREIFRHEKLKKAVRLARVRDHYIFSVESTGVLPP 318
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + +L K +L
Sbjct: 319 DVLVSEAIKILMGKCRRFLDEL 340
>gi|298674771|ref|YP_003726521.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
gi|298287759|gb|ADI73725.1| DNA-directed RNA polymerase [Methanohalobium evestigatum Z-7303]
Length = 265
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 21/141 (14%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDV 61
AID + + N++VL DE + R+ LIPL + E +D +CTC + C C V TL
Sbjct: 42 AIDDLNIYNNTSVLYDEQLGLRLALIPLAT-ENIDDYTTQDECTCEEGCPSCEVSITLSA 100
Query: 62 KCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYA 121
+ + V + DL S+D + P AD N I I++L++ Q + L A A
Sbjct: 101 ----EGPKMVYSGDLISSDPGIQP-------ADTN-------IPIIELKEDQRVVLEALA 142
Query: 122 KKGFGKEHAKWNPTAGVCFEY 142
KG GK++AKW AGV Y
Sbjct: 143 HKGLGKDNAKWQ--AGVACGY 161
>gi|225717016|gb|ACO14354.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Esox lucius]
Length = 239
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 22/166 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++ L
Sbjct: 88 MAVEKVFIYNNTSIIQDEVLAQRLGLIPIKADP---RLFEYRNAGDEEGTEIDTIQLQLK 144
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+KC + H T D ++ ++ +N + DIL+ KLR GQEL + +
Sbjct: 145 IKCTRN---HQATKD-----------SADPQELYLNHMVYSKDILLAKLRPGQELDIVMH 190
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE 166
KG G++HAK++P A + P+ ++ KP E +S SE
Sbjct: 191 CVKGIGQDHAKFSPVATASYRLLPEITLM-----KPVEGGESRASE 231
>gi|196010261|ref|XP_002114995.1| hypothetical protein TRIADDRAFT_59063 [Trichoplax adhaerens]
gi|190582378|gb|EDV22451.1| hypothetical protein TRIADDRAFT_59063 [Trichoplax adhaerens]
Length = 349
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 112/262 (42%), Gaps = 65/262 (24%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GLIP+ +D + D ++ S+ FTL
Sbjct: 85 MAIEKVVIHNNTSIIQDEVLAHRLGLIPIAADPKLFDNFNPGDTPT----NKNSITFTLQ 140
Query: 61 VKCVDDQTRH--------------VTTADLKSTDARVVPVTSRNRDADMNEYGETD---- 102
+KC+ +++ H VTT DLK N D D N D
Sbjct: 141 IKCIRNRSAHSDATDPEELYINSKVTTKDLK---------LKYNEDQD-NAIPNKDIRPV 190
Query: 103 --DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFE---YDPDNSMRHTL----- 152
DILI KLR GQE+ L KG G +HAK++P + P+ ++ +
Sbjct: 191 HEDILIAKLRPGQEIDLEMICVKGTGADHAKFSPVGNNLYLLVWLMPEIILKQAVTGKRA 250
Query: 153 ------FP------KPDEWPKSEYSE---LDETQHEAPYNWEAKP--------NKYFFNV 189
FP K + K+ Y + LD + + E K + + F +
Sbjct: 251 KRLAKCFPEGVIGIKEIKGIKTAYIDKPRLDTCSRQVLRDPELKEHVILNKIRDHFIFCI 310
Query: 190 ESAGALKPENIVIMGVTVLKQK 211
ES G++ P +I V +L+QK
Sbjct: 311 ESTGSIPPADIFRESVKILRQK 332
>gi|291230540|ref|XP_002735226.1| PREDICTED: polymerase (RNA) I polypeptide C, 30kDa-like, partial
[Saccoglossus kowalevskii]
Length = 202
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 89/194 (45%), Gaps = 30/194 (15%)
Query: 51 SECSVEFTLDVKCV------------DDQTRH--VTTADLKSTDARVVPVTSRNRDADMN 96
+E ++EF L VKC D+ RH VTT DLK VP ++ +
Sbjct: 6 TEDTIEFQLKVKCTRNPHAPKDATDPDEMYRHWRVTTKDLKW-----VPFGNQGDIYSGD 60
Query: 97 E-YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPK 155
+ Y DDILI KLR GQE+ ++ + KG GK+HAK++P A + P+ + + +
Sbjct: 61 DIYSVHDDILIAKLRPGQEIDVKVHCVKGLGKDHAKFSPVATASYRLLPEMKLTKPVVGE 120
Query: 156 PDEWPKSEYS-ELDETQHEAPYNWE---------AKPNKYFFNVESAGALKPENIVIMGV 205
E +S + E Q + + N + F+VES GALKP+ +V +
Sbjct: 121 QAERLAKTFSPRVIEVQDIGGISSQDLKDCVKLSKVRNHFIFSVESTGALKPDVLVSEAI 180
Query: 206 TVLKQKLSNLQTQL 219
VL K T L
Sbjct: 181 KVLIGKCRTFLTAL 194
>gi|241951478|ref|XP_002418461.1| DNA-directed RNA polymerases I and III subunit, putative [Candida
dubliniensis CD36]
gi|223641800|emb|CAX43762.1| DNA-directed RNA polymerases I and III subunit, putative [Candida
dubliniensis CD36]
Length = 336
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 110/258 (42%), Gaps = 49/258 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFT 58
+A + V + N++V+ DE +A RIGLIP D D++ + + ++ F + ++ +
Sbjct: 80 VAAETVYMFMNTSVIQDEVLAQRIGLIPWKIDP--DKLTWVDETVDINDRFTEDNTIVLS 137
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGETD-------------D 103
LDV C + H A STD R + S +D +G + D
Sbjct: 138 LDVAC--SKNPH---APKNSTDPRELYKNSHVYAKDFKFEPHGNQEEKFKDTPVVPCDPD 192
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL----------- 152
IL+ KLR GQE+ LRA+ G G +HAK++P A + P ++ +
Sbjct: 193 ILLAKLRPGQEISLRAHCVLGIGSDHAKFSPVATASYRLLPVIDIKQPITGELAKKFQKC 252
Query: 153 FPKP----DEWPKSEYSE----------LDETQHEAPYNWEAKPNKYFFNVESAGALKPE 198
FP D K+ + L + + + + + FNVES GA+ P
Sbjct: 253 FPPGVIGIDTNGKAYVKDARKDTVSREVLRHPEFDGKVQLGRQRDHFIFNVESTGAMPPA 312
Query: 199 NIVIMGVTVLKQKLSNLQ 216
I V +LK K L+
Sbjct: 313 EIFFKSVRLLKNKAEYLR 330
>gi|224047705|ref|XP_002195566.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Taeniopygia guttata]
Length = 346
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 113/262 (43%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVFVYNNTSIVQDEILAHRLGLIPIRADP---RLFEYRNQGDQEGTEIDTLQFQLK 143
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNR---DADMNEYGETDDILIVK 108
+KC + ++D + S VP+ ++ DAD DDILI
Sbjct: 144 IKCKRNPQAAKESSDPDELYFNHKVYSKHMTWVPLGNQTDLFPDADFRPV--HDDILIAL 201
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKS------ 162
LR GQE+ + + KG GK+HAK++P A + PD ++ L P DE ++
Sbjct: 202 LRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITL---LQPVEDEAAETLQKCFS 258
Query: 163 -----------------EYSELDE-----TQHEAPYN---WEAKPNKYFFNVESAGALKP 197
+ LD +HE N N Y F+VES G L P
Sbjct: 259 PGVIEIQNINGKKVARVANARLDTFSREVFRHEGLKNLVRLARVRNHYIFSVESTGILPP 318
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + +L K +L
Sbjct: 319 DVLVSEAIKILMGKCQRFLNEL 340
>gi|374327628|ref|YP_005085828.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum sp. 1860]
gi|356642897|gb|AET33576.1| DNA-directed RNA polymerase subunit D (rpoD) [Pyrobaculum sp. 1860]
Length = 260
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 107/236 (45%), Gaps = 38/236 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC-TCVDFCSECSVEFTL 59
MAID V + N++V+ DE +A R+GLIPLT+ + + DC + + SECS TL
Sbjct: 40 MAIDSVVVVNNTSVMYDEMLAHRLGLIPLTTP--LSALPPIEDCVSGLADPSECSARLTL 97
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V D T V + DL S V PV DI IVKL KGQ + L A
Sbjct: 98 QVTADGDLT--VYSGDLVSERPDVAPVYK--------------DIPIVKLVKGQSIVLEA 141
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYN-- 177
YAK G ++HAKW A + Y P +R+ + E + ++L E E +N
Sbjct: 142 YAKLGVARDHAKWQ-AALASYYYYPRVEVRNE---ECRERCREICAKL-EDPIECTFNKA 196
Query: 178 WEAK------------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
W K NKY F +ES G E + +LK+K + +L+
Sbjct: 197 WTCKNLCKDGLEVTWERNKYVFWIESYGNYDVETALREAFRILKKKFAFFAEELSR 252
>gi|308508009|ref|XP_003116188.1| hypothetical protein CRE_09265 [Caenorhabditis remanei]
gi|308251132|gb|EFO95084.1| hypothetical protein CRE_09265 [Caenorhabditis remanei]
Length = 366
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 112/268 (41%), Gaps = 49/268 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE---- 56
MA++ + L N++V+ DE + R+GL+PL D + + + +C E
Sbjct: 94 MALEKIYLYQNTSVIQDEVLCHRLGLLPLCVDPRGFQFPTEKVVGINEKGVDCDEEPAGD 153
Query: 57 ------FTLDVKCVDDQTRHVTTADLK---------STDARVVPVTSR--NRDADMNEYG 99
F ++V C ++ + D K S VP+ + N
Sbjct: 154 ATRNLIFKINVSCTKNRNALPNSTDPKTLYHHSSVYSGSFAWVPIGDQKSNYTDSTTPRM 213
Query: 100 ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW 159
TDDIL+ KLR GQE+ +A KG G++HAK++P A + P + + + E
Sbjct: 214 VTDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEITGEAAER 273
Query: 160 PKSEYSE-------------------------LDETQHE--APYNWEAKPNKYF-FNVES 191
KS +SE + +HE A K ++F F+VES
Sbjct: 274 LKSVFSEGVIEIEKKGSKRVAVVKDARKDTCSRNVFRHEDLAKVVQLGKNKQHFIFSVES 333
Query: 192 AGALKPENIVIMGVTVLKQKLSNLQTQL 219
GALK +V+ V++ K +L+ Q+
Sbjct: 334 TGALKSSELVVEACKVMETKCRSLRKQI 361
>gi|221056596|ref|XP_002259436.1| DNA-diDNA-directed RNA polymerase I [Plasmodium knowlesi strain H]
gi|193809507|emb|CAQ40209.1| DNA-diDNA-directed RNA polymerase I, putative [Plasmodium knowlesi
strain H]
Length = 333
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 103/259 (39%), Gaps = 57/259 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD--------CTCVDFCSE 52
+AI+ V + N+ +++DE + R+GLIP D D I + + C C
Sbjct: 86 IAIEKVNIFQNTGIIADEILCHRLGLIPFKFD--ADLINFKEEYEKYNHLNCFC------ 137
Query: 53 CSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET--DDILIVKLR 110
F L VK T+ + S D + P+ + + + D+ILI KL
Sbjct: 138 ----FKLHVKFTKKAGSSETSQSIYSRDLKWCPINEQQKLRFQKNPPKVVDDNILITKLA 193
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSEL--- 167
GQE+ L + +KG GK HAKW+P ++ P S F + + K E ++L
Sbjct: 194 NGQEIELICFLEKGIGKTHAKWSPVCTAVYKMYPSFS-----FNTCENFTKEEKNDLVNI 248
Query: 168 -----------DETQHEAPYN----------------WEAKPNKYFFNVESAGALKPENI 200
D + P N +E N + F +ES G +I
Sbjct: 249 CPRNVFDVEDSDTLVAKNPLNCSSCRVCIEKYPKKISFEKVKNHFIFTIESTGCFSSADI 308
Query: 201 VIMGVTVLKQKLSNLQTQL 219
+ +LK K+ +++ L
Sbjct: 309 FRKALLILKDKVVSVKEVL 327
>gi|68482204|ref|XP_714986.1| hypothetical protein CaO19.11048 [Candida albicans SC5314]
gi|68482331|ref|XP_714923.1| hypothetical protein CaO19.3564 [Candida albicans SC5314]
gi|46436522|gb|EAK95883.1| hypothetical protein CaO19.3564 [Candida albicans SC5314]
gi|46436587|gb|EAK95947.1| hypothetical protein CaO19.11048 [Candida albicans SC5314]
Length = 369
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 109/258 (42%), Gaps = 49/258 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFT 58
+A + V + N++V+ DE +A RIGLIP D D++ + + ++ F + ++ +
Sbjct: 113 VAAETVYMFMNTSVIQDEVLAQRIGLIPWKIDP--DKLTWVDETVDINDRFTEDNTIVLS 170
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGETD-------------D 103
LDV C + A STD R + S +D +G + D
Sbjct: 171 LDVACSKN-----PHAPKNSTDPRELYKNSHVYAKDFKFEPHGNQEEKFKDTPVVPCDPD 225
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL----------- 152
IL+ KLR GQE+ LRA+ G G +HAK++P A + P ++ +
Sbjct: 226 ILLAKLRPGQEISLRAHCVLGIGSDHAKFSPVATASYRLLPVIDIKEPITGELAKKFQKC 285
Query: 153 FPKP----DEWPKSEYSE----------LDETQHEAPYNWEAKPNKYFFNVESAGALKPE 198
FP D K+ + L + + + + + FNVES GA+ P
Sbjct: 286 FPPGVIGIDANGKAYVKDARKDTVSREVLRHPEFDGKVQLGRQRDHFIFNVESTGAMPPA 345
Query: 199 NIVIMGVTVLKQKLSNLQ 216
I V +LK K L+
Sbjct: 346 EIFFKSVRLLKNKAEYLR 363
>gi|401884851|gb|EJT48989.1| hypothetical protein A1Q1_01900 [Trichosporon asahii var. asahii
CBS 2479]
Length = 356
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 115/266 (43%), Gaps = 48/266 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++++ DE +A R+GL+PL D R L + + F L
Sbjct: 94 VAIEDVYVWNNTSIMQDEVLAHRVGLVPLKIDP---RTLDFKPSNYSAPMENDTHVFDLR 150
Query: 61 VKCVDDQTRHVTTADLKST----DARV-------VPVTSRNRDADMNEYGET-DDILIVK 108
VKC D+ R + D+ V VP + E DDIL+VK
Sbjct: 151 VKC--DRRRDAAPGETDPKKLYYDSNVYTGMMKWVPSGQQKSKYKGKEPRPVLDDILLVK 208
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE-L 167
LR GQ + L +A+KG G +HAK++P A + P +R + + E KS ++ +
Sbjct: 209 LRPGQMVDLHCFARKGVGADHAKYSPVATASYRLLPHIILREPIPLEDQEKFKSCFAPGV 268
Query: 168 DETQHEAPYNWEA---KPNK-------------------------YFFNVESAGALKPEN 199
E + +A N + P K + FNVESAG PE
Sbjct: 269 IELEKDADGNQQVVVKNPRKDTVSREVLRHKEFQDKVELARIRDHFIFNVESAGQYPPEE 328
Query: 200 IVIMGVTVLKQKLSNLQTQLAHDRVF 225
+V + ++ K+S ++ L D++F
Sbjct: 329 LVPEAIKIMLSKISAVEAGL--DKLF 352
>gi|340058077|emb|CCC52431.1| putative DNA-directed RNA polymerase, alpha subunit [Trypanosoma
vivax Y486]
Length = 389
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE---F 57
+A D + +E N +++ DE +A RIGL+P+ V RI Y D + F + F
Sbjct: 126 LAFDRILIEENDSIMPDELLAHRIGLVPVAGP--VSRIHYVTDSQQISFDALDPTRVLLF 183
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSR----NRDADMNEYGETDDILIVKLRKGQ 113
LDV + R V + S D + P+ S+ +D + DI++ +L GQ
Sbjct: 184 ELDV----EGRRGVQATSVYSGDLKWRPLPSQEPWGTGQSDDRVFLVHPDIVLTRLGPGQ 239
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCFE 141
L+LRA A KG G HAKW P + +E
Sbjct: 240 RLKLRAIALKGIGAVHAKWAPVSACYYE 267
>gi|238882305|gb|EEQ45943.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
albicans WO-1]
Length = 336
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 110/258 (42%), Gaps = 49/258 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFT 58
+A + V + N++V+ DE +A RIGLIP D D++ + + ++ F + ++ +
Sbjct: 80 VAAETVYMFMNTSVIQDEVLAQRIGLIPWKIDP--DKLTWVDETVDINDRFTEDNTIVLS 137
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGETD-------------D 103
LDV C + H A STD R + S +D +G + D
Sbjct: 138 LDVAC--SKNPH---APKNSTDPRELYKNSHVYAKDFKFEPHGNQEEKFKDTPVVPCDPD 192
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL----------- 152
IL+ KLR GQE+ LRA+ G G +HAK++P A + P ++ +
Sbjct: 193 ILLAKLRPGQEISLRAHCVLGIGSDHAKFSPVATASYRLLPVIDIKEPITGELAKKFQKC 252
Query: 153 FPKP----DEWPKSEYSE----------LDETQHEAPYNWEAKPNKYFFNVESAGALKPE 198
FP D K+ + L + + + + + FNVES GA+ P
Sbjct: 253 FPPGVIGIDANGKAYVKDARKDTVSREVLRHPEFDGKVQLGRQRDHFIFNVESTGAMPPA 312
Query: 199 NIVIMGVTVLKQKLSNLQ 216
I V +LK K L+
Sbjct: 313 EIFFKSVRLLKNKAEYLR 330
>gi|167044152|gb|ABZ08834.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG5E24]
Length = 200
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 73/225 (32%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTS-----DEVVDRILYSRDCTCVDFCSECSVE 56
AID V + NS+V+ DE +A +G+IPL + DE R++ D SE +
Sbjct: 41 AIDTVDIIENSSVIPDEGLALTLGMIPLKTELNGFDESNSRVILVLD-------SEAA-- 91
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
+ T+ VT+A+L+S D V P++ + I IV L GQ ++
Sbjct: 92 ---------ETTKIVTSAELESKDQVVKPISKQ--------------IPIVHLAPGQRIK 128
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPY 176
L AYA+ G G EHAKWN +A + + D
Sbjct: 129 LEAYARLGRGTEHAKWN-SANISVLTNAD------------------------------- 156
Query: 177 NWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
K ++ VE+ G+L+P+ I++ G+ L ++L + L +
Sbjct: 157 ----KEGEHILTVETTGSLEPKQIILAGIEELSKRLEEFKEILVN 197
>gi|449541898|gb|EMD32879.1| hypothetical protein CERSUDRAFT_160889 [Ceriporiopsis subvermispora
B]
Length = 364
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 75/151 (49%), Gaps = 11/151 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE +A R+GLIPL D R+ R T ++ F L+
Sbjct: 92 MAIEHVYVWNNTSVIQDEVLAQRLGLIPLDVD---PRMFEFRTQTDTP-TDRNTLVFQLN 147
Query: 61 VKC--VDDQTRHVTTAD----LKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQ 113
V C + + R T+ ++S D VP + AD +I++ KL GQ
Sbjct: 148 VTCERMKNAPRGSTSQHKHEYVRSEDLEWVPQGEQEVVFADKPPAPTNKEIVLAKLAPGQ 207
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
E+ + +A KG GKEHAKWNP A + P
Sbjct: 208 EINVELHAIKGVGKEHAKWNPVATASYRLHP 238
>gi|255724476|ref|XP_002547167.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240135058|gb|EER34612.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 337
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 110/261 (42%), Gaps = 54/261 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIP--LTSDEV--VDRILYSRDCTCVDFCSECSVE 56
+A++ V + N++V+ DE +A RIGLIP ++ D++ VD + D F + ++
Sbjct: 80 VAVETVYMFMNTSVIQDEVLAQRIGLIPWNISPDKLSWVDESVDVND----RFTEDNTIV 135
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGET------------- 101
+LDV C + A +TD V+ S +D +G
Sbjct: 136 LSLDVTCTKNPN-----APKDATDPNVLYKNSNVYAKDLKFEPHGTQAEKFRDTPVVPCD 190
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL--------- 152
+ILI KLR GQE+ LRA+ G G +HAK++P A + P ++ +
Sbjct: 191 PNILIAKLRPGQEISLRAHCILGIGSDHAKFSPVATASYRLLPVIDIKEPITGKLAEKFQ 250
Query: 153 --FPKPDEWPKSEYSE---------------LDETQHEAPYNWEAKPNKYFFNVESAGAL 195
FP S+ E L + + + + + FNVES GA+
Sbjct: 251 KCFPPGVIGIDSKTGEAYVADARKDTVSREVLRHPEFDGKVKLGRQRDHFIFNVESTGAM 310
Query: 196 KPENIVIMGVTVLKQKLSNLQ 216
P+ I V +LK K L+
Sbjct: 311 TPDEIFCKSVRILKNKAEYLR 331
>gi|389583971|dbj|GAB66705.1| DNA-directed RNA polymerase I, partial [Plasmodium cynomolgi strain
B]
Length = 333
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 119/284 (41%), Gaps = 50/284 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD------CTCVDFCSECS 54
+AI+ V + N+ +++DE + R+GLIP D D I + + C FC +
Sbjct: 86 IAIEKVNIFQNTGIIADEILCHRLGLIPFKFD--ADLINFKEEYEKYNHLNC--FCFKLH 141
Query: 55 VEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET--DDILIVKLRKG 112
V+FT V + T+ + S D + P+ + + D+ILI KL G
Sbjct: 142 VKFTKKVGSSE------TSQSIYSRDLKWCPINEQQKARFQKNPPRVVDDNILITKLSNG 195
Query: 113 QELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQH 172
QE+ L + +KG GK HAKW+P ++ +P ++ ++
Sbjct: 196 QEIELICFLEKGIGKTHAKWSPVCTAVYKM----------------YPAFSFNTCEKLTK 239
Query: 173 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAP 232
E ++ + K F+VE + L +N + + + + +++ ++V
Sbjct: 240 EEKHDLVSICPKNVFDVEDSDTLVAKN--PLNCSSCRVCIEKYPKKISFEKV-------- 289
Query: 233 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
N + F +ES G +I + +LK K+ +++ L
Sbjct: 290 ------KNHFIFTIESTGCFSSADIFRKALLILKDKVVSVKEVL 327
>gi|452207493|ref|YP_007487615.1| DNA-directed RNA polymerase subunit D [Natronomonas moolapensis
8.8.11]
gi|452083593|emb|CCQ36905.1| DNA-directed RNA polymerase subunit D [Natronomonas moolapensis
8.8.11]
Length = 247
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 56/239 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+++D V++ NS+V+ DE IA R+GLIPLT T D+ E +V +D
Sbjct: 43 LSVDTVRVIENSSVMFDEQIALRLGLIPLT--------------TPDDYEPEETVTLAID 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D +V P +++ I+ L++GQ L L A
Sbjct: 89 VEG----PATAYSGDLVSSDGQVQPA--------------EENVPIIDLKEGQRLELEAD 130
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKS----------EYSELDET 170
A+ G+GK+HAK V + + R L DE+ + + EL ET
Sbjct: 131 AELGYGKDHAKHQGGVAVGYRH----LQRVALGDDRDEFAEDDPEIIRGVIEDDGELVET 186
Query: 171 QH----------EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+ + E PN + F+VE+ G++ + +V+ V L+ + L+ +
Sbjct: 187 ASFDNDLSDRYPDREVSVEDVPNAFVFDVETDGSMTVDELVLKAVESLRTRADELEAAV 245
>gi|57641438|ref|YP_183916.1| DNA-directed RNA polymerase subunit D [Thermococcus kodakarensis
KOD1]
gi|73917880|sp|Q5JJF4.1|RPOD_PYRKO RecName: Full=DNA-directed RNA polymerase subunit D
gi|57159762|dbj|BAD85692.1| DNA-directed RNA polymerase, subunit D [Thermococcus kodakarensis
KOD1]
Length = 259
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 102/244 (41%), Gaps = 54/244 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+ +IPLT+ +R +S D +D ++T+
Sbjct: 40 FAVDEVEFLENDSALFDEIIAHRLAMIPLTTPH--ER--FSLDALELD-------DYTVT 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DLKS+D V P +I IVKL +GQ L AY
Sbjct: 89 LSLEAEGPGMVYSGDLKSSDGDVKPANP--------------NIPIVKLAEGQRLTFNAY 134
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE-----LDETQHEA- 174
A+ G GK+HAKW P F Y + H PD E +E ++E+ E
Sbjct: 135 ARLGRGKDHAKWQP----GFVYYKYLTKIHVSKDVPDWEELKELAERRGLPVEESDEEIV 190
Query: 175 ---------PYNWEAK----------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
P +E P + F VE+ G L E IV + + +L +K
Sbjct: 191 ITTIKAFYLPRKFEEHMGKGIREEIVPGSFVFTVETNGELPVEEIVSIALKILMRKSDRF 250
Query: 216 QTQL 219
+L
Sbjct: 251 INEL 254
>gi|354546273|emb|CCE43003.1| hypothetical protein CPAR2_206460 [Candida parapsilosis]
Length = 336
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 109/255 (42%), Gaps = 43/255 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV----VDRILYSRDCTCVDFCSECSVE 56
+A++ V N++V+ DE +A RIGL+PL D VD+ + D + + ++
Sbjct: 80 VAVETVYSFMNTSVIQDEVLAHRIGLVPLKVDPDSLTWVDKSVDEND----RYTEDNTIV 135
Query: 57 FTLDVKCVDDQ---------TRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-DILI 106
+LDV C + +++ + D + P S+ N TD +IL+
Sbjct: 136 LSLDVTCTKNPHAPKNSTNPNELYRNSNVYAKDLKFEPQGSQLEKYKDNPVVPTDPNILL 195
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPK 155
KLR GQE+ LRA+ G G +HAK++P A + P ++ + FP
Sbjct: 196 AKLRPGQEISLRAHCILGVGADHAKFSPVATASYRLLPVIDIKEPITGELAKKFQKCFPP 255
Query: 156 P--DEWPKSEYSELD--------ETQHEAPYNWEAKPNK----YFFNVESAGALKPENIV 201
+ K E D E +N + K + + F VES GA+ PE I
Sbjct: 256 GVIEIDSKGEAYVADARKDTVSREVLRHPEFNGKVKLGRQRDYFIFQVESTGAMPPEEIF 315
Query: 202 IMGVTVLKQKLSNLQ 216
V VLK K L+
Sbjct: 316 FKSVRVLKNKAEYLR 330
>gi|297678210|ref|XP_002816974.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Pongo abelii]
Length = 346
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G +DIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHNDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFS 258
Query: 166 --------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
LD E N + K + Y F+VES G L P
Sbjct: 259 PGVIEVQEVQGKKVARVANPRLDTFSREIFRNEKLKKVVRLARVRDHYIFSVESTGVLPP 318
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + VL K +L
Sbjct: 319 DVLVSEAIKVLMGKCRRFLDEL 340
>gi|297290919|ref|XP_001096103.2| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1,
partial [Macaca mulatta]
Length = 298
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/267 (27%), Positives = 114/267 (42%), Gaps = 62/267 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSR----DCTCVDFCSECSVE 56
MA++ V + N++++ DE +A R+GLIP+ +D R+ R D T +D ++
Sbjct: 40 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQDEDGTEID-----TLR 91
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET---- 101
F L V+C TR+ A S+D + V + AD+ G
Sbjct: 92 FRLQVRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVH 146
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK 161
DDILI +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E
Sbjct: 147 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEAAEELS 206
Query: 162 SEYS----ELDETQHEAPYNWEAKP-------------------------NKYFFNVESA 192
+S E+ E Q + A P + Y F+VES
Sbjct: 207 RCFSPGVIEVQEVQGKKVARV-ANPRLDTFSREIFRHEKLKKVVRLARVRDHYIFSVEST 265
Query: 193 GALKPENIVIMGVTVLKQKLSNLQTQL 219
G L P+ +V + VL K +L
Sbjct: 266 GVLPPDVLVSEAIKVLMGKCRRFLDEL 292
>gi|409045867|gb|EKM55347.1| hypothetical protein PHACADRAFT_161317 [Phanerochaete carnosa
HHB-10118-sp]
Length = 364
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 121/284 (42%), Gaps = 45/284 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECS----VE 56
+AI+ V + N++V+ DE +A RIGL+ ++D I T F + S +
Sbjct: 85 IAIEHVYVWNNTSVIHDEVLAHRIGLVQPSADPSTLEIR-----TPTGFGATPSDRNTLV 139
Query: 57 FTLDVKC---VDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-DILIVKLRKG 112
F L V C + ++KS D VP + N G T+ DI++ KLR G
Sbjct: 140 FRLQVTCERAPKGSGKEYINDEVKSGDLVWVPQGEQEEVFANNPPGPTNKDIVLAKLRPG 199
Query: 113 QELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQH 172
QE+ + +A KG GKEHAKW+P A + H L L Q
Sbjct: 200 QEIDMELHAIKGVGKEHAKWSPVATASYRL-------HPLI-------------LLNPQK 239
Query: 173 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAP 232
P + K F S G ++ + + + + + ++ ++ F+ E
Sbjct: 240 PVPTHLAKK----FAGCFSPGVVQVDADGEIWIDLHGMRKDSVSREVLRHEEFHGCVELK 295
Query: 233 --YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT 274
+W + FNVES G PE ++ V V+++K+++++
Sbjct: 296 RVRDW------FIFNVESEGPYAPERLLPEAVKVMREKVASIRA 333
>gi|167044506|gb|ABZ09181.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG6J21]
Length = 200
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 96/225 (42%), Gaps = 73/225 (32%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTS-----DEVVDRILYSRDCTCVDFCSECSVE 56
AID V + NS+V+ DE +A +G+IPL + DE R++ D SE +
Sbjct: 41 AIDTVDIIENSSVIPDEGLALTLGMIPLKTELNGFDESNSRVILVLD-------SEAA-- 91
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
+ T+ VT+A+L+S D V P++ + I IV L GQ ++
Sbjct: 92 ---------ETTKIVTSAELESKDQVVKPISKQ--------------IPIVHLAPGQRIK 128
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPY 176
L AYA+ G G EHAKWN +A + + D
Sbjct: 129 LEAYARLGRGTEHAKWN-SANISVLTNAD------------------------------- 156
Query: 177 NWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
K ++ VE+ G+L+P I++ G+ L ++L + L +
Sbjct: 157 ----KEGEHILTVETTGSLEPRQIILAGIEELSKRLEEFKEILVN 197
>gi|115452445|ref|NP_001049823.1| Os03g0295400 [Oryza sativa Japonica Group]
gi|108707636|gb|ABF95431.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
gi|113548294|dbj|BAF11737.1| Os03g0295400 [Oryza sativa Japonica Group]
gi|222624742|gb|EEE58874.1| hypothetical protein OsJ_10475 [Oryza sativa Japonica Group]
Length = 379
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 122/298 (40%), Gaps = 49/298 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V++DE ++ R+GLIPL +D + + D ++ + L
Sbjct: 110 MAIEKVLMADNTSVIADEVLSHRLGLIPLDADPRLFEYISENDVPT----ERNTIVYKLH 165
Query: 61 VKCVDDQTR-HVTTADLK-----STDARVVPVTSRNRDADMNEYGETD------------ 102
V C R V + DL+ S P S ++ + ++
Sbjct: 166 VSCKKGSPRLTVKSGDLEWLPEGSQLPLASPAQSGDKQKTYTSFSQSQKDILEKPLGVKF 225
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK 161
DI I +L GQ + L +A KG GK HAKW+P A + P+ +R +
Sbjct: 226 KDITIARLGPGQAIELEVHAVKGIGKVHAKWSPVATAWYRMLPEVVLREEI--------- 276
Query: 162 SEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
+ ++ + + P N F++E G + +V + + L Q
Sbjct: 277 -KDADAEMLVAKCPVN--------VFDIEDLGNGEKRAVVA------RPRACTLCRQCVM 321
Query: 222 DRVFYVINEAPYNWEAK--PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 277
V+ E + + + F +ES GAL PE + V +L++K + ++L+
Sbjct: 322 GPTGEVMGPTVEQVELRRVRDHFIFTIESTGALPPEMLFTEAVRILEEKCERVISELS 379
>gi|393909614|gb|EFO27840.2| hypothetical protein LOAG_00653 [Loa loa]
Length = 684
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 115/261 (44%), Gaps = 44/261 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE---- 56
MAI+ V L N++++ DE ++ R+GL+P+ +D + ++ ++ + +C+ E
Sbjct: 414 MAIEKVYLYQNTSIIPDEVLSHRLGLLPIKADPRLFKMPLAQVVGIDESGVDCNEEPAGD 473
Query: 57 ------FTLDVKCVDDQTRHVTTADLK---------STDARVVPVTSRNRDADMNEYGET 101
F + V C + T + K S + +P+ ++
Sbjct: 474 PERNLIFEIKVTCSRNSNALKTATNPKEIYENAFVYSNAFKWIPIGDQSSSLPYPPAMVH 533
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK 161
DDIL+ +LR GQE+ R + KG G++HAK++P A + P ++ + K
Sbjct: 534 DDILVAQLRPGQEIEARCHCLKGLGRDHAKFSPVATASYRLLPQIVLKRKFSGADAQRIK 593
Query: 162 SEYSE----------------------LDETQHE--APYNWEAKPNKYF-FNVESAGALK 196
S +SE + +HE A + ++ +F F+VES GAL+
Sbjct: 594 SSFSEGVIEIDADGVAVVRDARCDTCSRNILRHEDLAEHIELSRIKDHFIFSVESTGALR 653
Query: 197 PENIVIMGVTVLKQKLSNLQT 217
+V+ V+++K L++
Sbjct: 654 SAELVVEACKVMEEKCRALRS 674
>gi|57094492|ref|XP_532147.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Canis lupus familiaris]
Length = 346
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 113/261 (43%), Gaps = 49/261 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDDEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNRDADMNEYGET----DDILIV 107
V+C + ++D + S VP+ ++ AD+ G DDILI
Sbjct: 144 VRCTRNPHAAKDSSDPNELYVNHKVYSRHMTWVPLGNQ---ADLFPEGTIRPVHDDILIA 200
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS-- 165
+LR GQE+ L + KG GK+HAK++P A + PD ++ + E +S
Sbjct: 201 QLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAAEELSRCFSPG 260
Query: 166 --ELDETQHEAPYNWEAKP-------------------------NKYFFNVESAGALKPE 198
E+ E Q + A P + Y F+VES G L P+
Sbjct: 261 VIEVQEVQGKKVARV-ANPRLDTFSREVFRKEKLKKVVRLARVRDHYIFSVESTGVLPPD 319
Query: 199 NIVIMGVTVLKQKLSNLQTQL 219
+V + VL K +L
Sbjct: 320 VLVSEAIKVLMGKCRRFLDEL 340
>gi|37935546|gb|AAP69818.1| RNA polymerase subunit I [Bos taurus]
Length = 250
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 23/163 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ +++F L
Sbjct: 34 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEGGTEIDTLQFRLQ 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V R AD+ G DDIL
Sbjct: 91 VRC----TRNPHAAK-DSSDPNELYVNHRVYTRHMTWVPLGNQADLFPEGAIRPVHDDIL 145
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSM 148
I +LR GQE+ L + KG GK+HAK++P A + PD ++
Sbjct: 146 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITL 188
>gi|25155095|ref|NP_504166.2| Protein RPAC-40 [Caenorhabditis elegans]
gi|351060931|emb|CCD68663.1| Protein RPAC-40 [Caenorhabditis elegans]
Length = 366
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 113/268 (42%), Gaps = 49/268 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE---- 56
MA++ + L N++V+ DE + R+GL+PL D + + + +C E
Sbjct: 94 MALEKIYLYQNTSVIQDEVLCHRLGLLPLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGD 153
Query: 57 ------FTLDVKCVDDQTRHVTTADLK------STDARV---VPVTSRNRDADMNEYGE- 100
F ++V C ++ T D K S +R VP+ + +
Sbjct: 154 PAKNLIFKINVSCTKNRNAVPTATDPKQLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRM 213
Query: 101 -TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW 159
+DDIL+ KLR GQE+ +A KG G++HAK++P A + P + + + E
Sbjct: 214 VSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAER 273
Query: 160 PKSEYSE-------------------LDETQHEAPYNWE--------AKPNKYF-FNVES 191
KS +SE +T + E K ++F F+VES
Sbjct: 274 LKSVFSEGVIAIEKKGAKRIAVVKDARKDTCSRNVFRHEDLSKVVQLGKNKQHFIFSVES 333
Query: 192 AGALKPENIVIMGVTVLKQKLSNLQTQL 219
GALK +V+ V++ K +L+ Q+
Sbjct: 334 TGALKSSELVVEACKVMEIKCRSLRKQI 361
>gi|355570776|ref|ZP_09042046.1| DNA-directed RNA polymerase subunit D [Methanolinea tarda NOBI-1]
gi|354826058|gb|EHF10274.1| DNA-directed RNA polymerase subunit D [Methanolinea tarda NOBI-1]
Length = 281
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 107/251 (42%), Gaps = 50/251 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV-DFCSECSVEFTL 59
+AI+ V++ N++ L DE +A R+GLIP+ ++ + + C+C + C C V FTL
Sbjct: 39 LAIEDVRIYDNTSALFDEMLAHRLGLIPIKTEPGL--YVPQDKCSCGGEGCDRCGVAFTL 96
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V + V + DL D R VP D I IVKL K Q++ L A
Sbjct: 97 SV----EGPGMVYSRDLIPQDPRAVPAV--------------DTIPIVKLGKDQKVVLEA 138
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDP--DNSMRHTLFPKP-DEWPKSEY-----------S 165
A G+ HAKW PT F+ P D S R + DE P+S +
Sbjct: 139 RAVLNCGRVHAKWQPTTACGFKNYPVIDVSNRCDGCGRCVDECPRSILEVRNGRVTVIEN 198
Query: 166 ELDETQ---------------HEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQ 210
L+E E ++ +++ F VE G+L +I+ + LK
Sbjct: 199 RLEECSLCRLCEKACMSTGIGEEPAITITSEKSRFIFVVEGDGSLPVGDIITGALKYLKD 258
Query: 211 KLSNLQTQLAH 221
+ L+ Q++
Sbjct: 259 QSDELRAQVSE 269
>gi|440296135|gb|ELP88976.1| DNA-directed RNA polymerase subunit D, putative [Entamoeba invadens
IP1]
Length = 280
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 117/285 (41%), Gaps = 60/285 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI V++ N++ L DE+IA R+GLIPL S +V D E + +
Sbjct: 45 IAIQLVRVHLNTSYLCDEYIAHRLGLIPLDSTKVYD--------------FEDGDQTIFN 90
Query: 61 VKCVDDQTR---HVTTADLKSTDAR-VVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
++ V++ R +VT+ DL+ + + + PV Y + I+I +L Q L
Sbjct: 91 IRVVNENERESLNVTSNDLQFVEGKKLFPVG----------YKSDNPIIITQLGPRQSLY 140
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPY 176
+ +A KG GK HAKWNPT F+ D + T + + E+
Sbjct: 141 VDCFATKGTGKFHAKWNPTCQCVFQTLADIQINETKLANLTGEQRRTFCEM--------- 191
Query: 177 NWEAKPNKYFFNVESAGALK---PEN-IVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAP 232
P K F E G + PE+ I TV + + R F +
Sbjct: 192 ----CPQKVFEFQEINGRITVDHPESCIFCQECTVYSKDIGQ--------RNFCTVT--- 236
Query: 233 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 277
K +++ F VE G +++V G + K S L+++L
Sbjct: 237 ----PKTDEFIFKVEGTGVYPAKSVVSYGFGEMINKFSYLKSELG 277
>gi|149032427|gb|EDL87318.1| polymerase (RNA) II (DNA directed) polypeptide C, isoform CRA_c
[Rattus norvegicus]
Length = 92
Score = 68.9 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/42 (71%), Positives = 39/42 (92%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSR 42
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSR
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSR 86
>gi|167044977|gb|ABZ09642.1| putative RNA polymerase Rpb3/RpoA insert domain protein [uncultured
marine crenarchaeote HF4000_APKG8G2]
Length = 214
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 63/220 (28%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDV 61
AID V + NS+V+ DE IA +G+IPL ++ L D S V LD
Sbjct: 56 AIDTVDVIENSSVIPDEGIAHTLGMIPLKTE------LNGFDE------SNSRVILVLDS 103
Query: 62 KCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYA 121
+ ++ T+ VT+A+L+S D V P++ + I IV L GQ ++L AYA
Sbjct: 104 EAAEN-TKIVTSAELESKDQVVKPISKQ--------------IPIVHLAPGQRIKLEAYA 148
Query: 122 KKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAK 181
+ G G EHAKWN +A + + D K
Sbjct: 149 RLGRGTEHAKWN-SANISVLTNTD-----------------------------------K 172
Query: 182 PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
++ VE+ G+L+P I++ G+ L ++L + L +
Sbjct: 173 EDERILTVETTGSLEPRQIILAGIEELSKRLEEFKEILVN 212
>gi|225562812|gb|EEH11091.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
capsulatus G186AR]
Length = 380
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 64/283 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCT--CVDFCSEC---- 53
+AI+ V + N++V+ DE +A R+GL+PLT S E ++ + + R T D SE
Sbjct: 90 LAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGINWLRWFRQPTEGRPDSGSELADYN 149
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRN---RDADMNEYGET 101
+V L+V+C DD + A + + D PV + ++ D
Sbjct: 150 TVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKDITFHPVGRQETYFQEPDGVIRSAN 209
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL--------- 152
DIL+ KLR GQ++ + + KG G +HAK++P A + PD + +
Sbjct: 210 PDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIKIIRPILGNDALKFA 269
Query: 153 --FPKP-----------DEWPKSEYSELDETQHEA----PYN------------WEAK-- 181
FPK P S Y E E + +A P+ ++ K
Sbjct: 270 RCFPKGVIGIDSVSAEEASRPGSGY-EGHEGEKKAVVVDPFKDTMSRECLRHDEFQGKVK 328
Query: 182 ----PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+ + FNVES G + + + I V VLK K L+ LA
Sbjct: 329 LGRIRDHFIFNVESTGQFRSDVLFIESVKVLKLKCRRLKRDLA 371
>gi|145518624|ref|XP_001445184.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412628|emb|CAK77787.1| unnamed protein product [Paramecium tetraurelia]
Length = 316
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 13/161 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI VQ+ N++V+ DE +A R+GLIP+ +D + + + D ++ S++FTL
Sbjct: 69 MAIHKVQVIQNTSVIPDEVLAHRLGLIPIIADPL--QFIEKDDQE--EYNELNSIDFTLV 124
Query: 61 VKCV--------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRK 111
KC D + T + S+ P + + N +I+I KLR+
Sbjct: 125 AKCEKKPNSKHDDPIEQQYTNTTVHSSSLIWQPKGQQAKLFAANPIRPVHSNIIIAKLRE 184
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL 152
QEL LR +KG GK HAKW+P ++ P ++++ L
Sbjct: 185 NQELNLRLICEKGVGKRHAKWSPVCTAFYKLMPSITIKNQL 225
>gi|324508945|gb|ADY43772.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Ascaris suum]
Length = 343
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 107/265 (40%), Gaps = 52/265 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE---- 56
MA + + L N++++ DE + R+GL+P+ +D L+ T V +E V+
Sbjct: 72 MAFEKIYLYQNTSIIQDEVLCHRLGLLPIRADPR----LFEMPLTKVIGINETGVDVDEE 127
Query: 57 ----------FTLDVKC---------VDDQTRHVTTADLKSTDARVVPVTSRNRDADMNE 97
F L V C D A + S +P+ +
Sbjct: 128 PPGDPKRNLIFELKVSCKRKPNAPKSATDPQEIFDNAVVYSKSFEWIPIGDQATSLPYPP 187
Query: 98 YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD 157
DDIL+ KLR GQE+ R + KG G++HAK++P A + PD ++ +
Sbjct: 188 NMVHDDILVAKLRPGQEIEARCHCVKGIGRDHAKFSPVATASYRLLPDIVIKEKFSGEDA 247
Query: 158 EWPKSEYSE----------------------LDETQHE---APYNWEAKPNKYFFNVESA 192
E K+ +S+ + +HE + + + F+VES
Sbjct: 248 ERIKNSFSDGVIGIDADGFAYVKDARRDTCSRNILRHEDLAEHIELSRRKDHFIFSVEST 307
Query: 193 GALKPENIVIMGVTVLKQKLSNLQT 217
GALK +V+ V+++K L++
Sbjct: 308 GALKSSELVVEACRVMEEKCRTLKS 332
>gi|440800830|gb|ELR21864.1| RNA polymerase Rpb3/Rpb11 dimerization domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 350
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 12/153 (7%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GLIP+ VD + + E ++ F L
Sbjct: 97 MAIEHVWIHNNTSIIQDEVLAHRLGLIPIK----VDPRKFEFKKPGEEETDETTLVFKLK 152
Query: 61 VKCVDDQTRHVTTADLKSTDARVV-------PVTSRNR-DADMNEYGETDDILIVKLRKG 112
V+C + + +++V PV + AD DDILI KLR G
Sbjct: 153 VRCTRSNNTNPQNPEEAYVNSKVYSRDLIWEPVGGQAELFADDPPRPVHDDILIAKLRPG 212
Query: 113 QELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
QE+ + KG GKEHAKW+P + + PD
Sbjct: 213 QEIEVECRCAKGEGKEHAKWSPVSTAYYRLLPD 245
>gi|348576230|ref|XP_003473890.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cavia porcellus]
Length = 346
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 128/293 (43%), Gaps = 56/293 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEFRNEGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITL----------------- 241
Query: 166 ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVT-VLKQKLSNLQTQL-AHDR 223
L+ + EA A+ Y F S G ++ + + V V +L ++ H++
Sbjct: 242 -LEPVEGEA-----AEELSYCF---SPGVIEVQEVQGKKVARVANPRLDTFSREVFRHEK 292
Query: 224 VFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ + A + Y F+VES G L P+ +V + VL K +L
Sbjct: 293 LKKAVRLARVR-----DHYIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 340
>gi|145517526|ref|XP_001444646.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412068|emb|CAK77249.1| unnamed protein product [Paramecium tetraurelia]
Length = 316
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 13/161 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI VQ+ N++V+ DE +A R+GLIP+ + D + + ++ S++FTL
Sbjct: 69 MAIHKVQVIQNTSVIPDEVLAHRLGLIPI----IADPLQFVEKDDQEEYNELNSIDFTLY 124
Query: 61 VKCV--------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRK 111
KC D + T + S+ P + + N +I+I KLR+
Sbjct: 125 AKCEKKPNSKQDDPIEQQYTNTTVHSSSLIWQPKGQQAKLFAANPIRPVHSNIIIAKLRE 184
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL 152
QEL LR +KG GK HAKW+P ++ P ++++ L
Sbjct: 185 NQELNLRLICEKGVGKRHAKWSPVCTAFYKLMPSITIKNQL 225
>gi|222445013|ref|ZP_03607528.1| hypothetical protein METSMIALI_00629 [Methanobrevibacter smithii
DSM 2375]
gi|222434578|gb|EEE41743.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2375]
Length = 274
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 56/245 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS--DEVVDRILYSRDCTCVDFCSECSVEFT 58
+AI+ V + N + + +E +A R+GL PL S D + L D D+ SV F+
Sbjct: 39 IAIEDVNIMRNDSAMFNEVLAHRLGLTPLVSNMDAIEGLPLPGDD----DYEENNSVMFS 94
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
L ++ + V + DL S+D+++ PV D I +VKL++G++L +
Sbjct: 95 LK----EEGPKVVYSKDLISSDSKIKPVY--------------DTIPLVKLKEGEKLNIE 136
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL---FPKPDEWPKS---------EYSE 166
A AK G+GKEHAKW PT ++ P+ + + + D P+ E
Sbjct: 137 AVAKVGYGKEHAKWMPTTVCVYKQYPEITFNEDVGIDYECADACPRGVLKSDKRSKEIKI 196
Query: 167 LD--------------------ETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVT 206
LD E + E+ N N + F +E+ G++ P+ +++
Sbjct: 197 LDIENCAMCKSCVRASIRNAQSEGKDESYINVGYHENDFIFRIETDGSMPPKEVLLQACD 256
Query: 207 VLKQK 211
L +K
Sbjct: 257 ELGEK 261
>gi|427798089|gb|JAA64496.1| Putative rna polymerase i and iii subunit, partial [Rhipicephalus
pulchellus]
Length = 445
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 75/155 (48%), Gaps = 14/155 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA D V L N+ ++ DE +A RIGL+P D R+ R+ D E +VEF L
Sbjct: 84 MAPDKVYLYNNTGIIQDEVLAHRIGLVPFNIDP---RMFEYRESES-DGSPEDTVEFELK 139
Query: 61 VKCVDD--QTRHVTTADLKSTDARVVP--VTSRNRDADMNEYGET------DDILIVKLR 110
VKC + + TT D D V +T + +G DDI++ KLR
Sbjct: 140 VKCTKNPQAPKDATTPDELYKDHMVYTKHLTWNPLGSQAEIFGNKPPRPVHDDIILAKLR 199
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
GQE+ L+ + KG G+ HAK++P A + P+
Sbjct: 200 PGQEIDLKLHCVKGTGQVHAKFSPVATASYRLLPE 234
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
Query: 52 ECSVEFTLDVKCVDD--QTRHVTTADLKSTDARVVP--VTSRNRDADMNEYGET------ 101
E +VEF L VKC + + TT D D V +T + +G
Sbjct: 253 EDTVEFELKVKCTKNPQAPKDATTPDELYKDHMVYTKHLTWNPLGSQAEIFGNKPPRPVH 312
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DDI++ KLR GQE+ L+ + KG G+ HAK++P A + P+
Sbjct: 313 DDIILAKLRPGQEIDLKLHCVKGTGQVHAKFSPVATASYRLLPE 356
>gi|374628605|ref|ZP_09700990.1| DNA-directed RNA polymerase, subunit D [Methanoplanus limicola DSM
2279]
gi|373906718|gb|EHQ34822.1| DNA-directed RNA polymerase, subunit D [Methanoplanus limicola DSM
2279]
Length = 274
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 104/250 (41%), Gaps = 50/250 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV-DFCSECSVEFTL 59
+AI+ V L N++ L DE + R+GLIP+T+D + + +C+C + CS+C FTL
Sbjct: 39 LAIEDVYLYDNNSALFDEILTHRLGLIPITTD--LSEYVRRDECSCGGEGCSQCQAVFTL 96
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V + V + DL + VPV DI IVKL + Q++ L A
Sbjct: 97 SV----EGPGIVMSGDLVPQNPGAVPVNP--------------DIPIVKLDEDQKVVLEA 138
Query: 120 YAKKGFGKEHAKWNPT-------------------AGVCFEYDPDNSMRH------TLFP 154
A+ G EHAKW PT G C E P N ++ +
Sbjct: 139 RAELNTGMEHAKWQPTLACGYKAYPVITVSDRCDGCGKCVEQCPRNVLKAGSKAVLVIES 198
Query: 155 KPDEWPKSEYSE----LDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQ 210
+ ++ E + E + Y F VES G++ ++I+I + ++
Sbjct: 199 RLEDCSMCRLCEKACMASDIGDEPAIRVNPHDSDYIFVVESDGSMPVKDIMIRALDIIGN 258
Query: 211 KLSNLQTQLA 220
K L L+
Sbjct: 259 KSRGLVDVLS 268
>gi|148643488|ref|YP_001274001.1| DNA-directed RNA polymerase subunit D [Methanobrevibacter smithii
ATCC 35061]
gi|261350417|ref|ZP_05975834.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
gi|166229318|sp|A5UN55.1|RPOD_METS3 RecName: Full=DNA-directed RNA polymerase subunit D
gi|148552505|gb|ABQ87633.1| DNA-directed RNA polymerase, subunit D, RpoD [Methanobrevibacter
smithii ATCC 35061]
gi|288861200|gb|EFC93498.1| RNA polymerase Rpb3/Rpb11 dimerization domain protein
[Methanobrevibacter smithii DSM 2374]
Length = 274
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 56/245 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS--DEVVDRILYSRDCTCVDFCSECSVEFT 58
+AI+ V + N + + +E +A R+GL PL S D + L D D+ SV F+
Sbjct: 39 IAIEDVNIMRNDSAMFNEVLAHRLGLTPLVSNMDAIEGLPLPGDD----DYEENNSVMFS 94
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
L ++ + V + DL S+D+++ PV D I +VKL++G++L +
Sbjct: 95 LK----EEGPKVVYSKDLISSDSKIKPVY--------------DTIPLVKLKEGEKLNIE 136
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL---FPKPDEWPKS---------EYSE 166
A AK G+GKEHAKW PT ++ P+ + + + D P+ E
Sbjct: 137 AVAKVGYGKEHAKWMPTTVCVYKQYPEITFNEDVGIDYECADACPRGVLKSDKRSKEIKI 196
Query: 167 LD--------------------ETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVT 206
LD E + E+ N N + F +E+ G++ P+ +++
Sbjct: 197 LDIEDCAMCKSCVRASIRNAQSEGKDESYINVGYHENDFIFRIETDGSMPPKEVLLQACD 256
Query: 207 VLKQK 211
L +K
Sbjct: 257 ELGEK 261
>gi|50553838|ref|XP_504330.1| YALI0E23947p [Yarrowia lipolytica]
gi|49650199|emb|CAG79929.1| YALI0E23947p [Yarrowia lipolytica CLIB122]
Length = 339
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 114/252 (45%), Gaps = 32/252 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRILYSRDCTCVDFCSECSVEFTL 59
+A++ V + AN++++ DE +A R+GL+PL + E ++ + D + ++ + S F L
Sbjct: 83 IAVEEVFIHANTSIIQDEVLAHRLGLVPLVINPERINALPRGLDASEIEDYYDDSNTFVL 142
Query: 60 --DVKCVDDQTRHVTTADLKSTDARVVPVTSR---NRDADMNEYGET--DDILIVKLRKG 112
+V C + A + + D P+ ++ +D + + DILI KLR
Sbjct: 143 RLNVTCERLADGTMKNAHIYARDITFDPMGNQCQWVKDEGLENVFKVANPDILIAKLRPN 202
Query: 113 QELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPKP----- 156
Q + L + GFG +HAK++P A + P ++ + FPK
Sbjct: 203 QSINLTMFCHLGFGHDHAKFSPVATASYRLMPTITITGDITGDEAKKFQKCFPKGVIELE 262
Query: 157 DEWPKSEYSELDETQHEA----PYNWEAKPNK----YFFNVESAGALKPENIVIMGVTVL 208
P + D E +N + K + + FNVES+GAL+P+ I + V L
Sbjct: 263 GGKPVVADARKDTVSREVLRHEEFNGKVKLGRRRDHFIFNVESSGALEPDEIFLKSVMEL 322
Query: 209 KQKLSNLQTQLA 220
+ K L+ ++
Sbjct: 323 QAKAQTLKAAVS 334
>gi|320165910|gb|EFW42809.1| polymerase I polypeptide C [Capsaspora owczarzaki ATCC 30864]
Length = 414
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V N++++ DE +A R+GL+P+ +D R +RD ++ FTLD
Sbjct: 150 MAIETVFFTNNTSIIHDEALAHRLGLVPIRADP---RYFETRDTPDTQATDRNTLVFTLD 206
Query: 61 VKCV----------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET---DDILIV 107
VKC DD +++ + L S +V V +++A + DDILI
Sbjct: 207 VKCTKNPHASPNATDDTEKYINSRVLSSD---IVWVPKGDQEAQFQDAPIAPVHDDILIA 263
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
KLR GQ + + K G++HAK++P + P+
Sbjct: 264 KLRPGQAVACEMHCIKSIGRDHAKFSPVGTASYRLLPE 301
>gi|342185050|emb|CCC94532.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 258
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 101/243 (41%), Gaps = 34/243 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSV-EFTL 59
+A D V +E N V+ DE + RIGLIPL + + +D V F L
Sbjct: 13 LAFDRVLIEENDGVVPDEVLCHRIGLIPLAGPVTWMKYITDSHSVTIDNLDPAHVLVFEL 72
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET----DDILIVKLRKGQEL 115
DV + V + S D + P+ S+ A +E DI++ +L GQ L
Sbjct: 73 DV----EGQHGVQATSVYSGDLKWRPLRSQEEVAAKSEDNRVFLVHPDIVLTRLGPGQRL 128
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE-WPKSEYS--------- 165
+LRA A KG G HAKW+P A +E +RH K +E PK S
Sbjct: 129 KLRAIAIKGIGVVHAKWSPVAACFYE------IRHEAVRKEEETRPKRHSSRHLRHDADN 182
Query: 166 -ELDETQHEAPYNWEAKPNK--------YFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
E ++ +P + N F VES G L ++ + + +++ +L
Sbjct: 183 EEAEDVDLGSPASARGANNVSTQKGREIVRFTVESVGQLSAADVFRHALRLFIERMRDLV 242
Query: 217 TQL 219
+Q+
Sbjct: 243 SQV 245
>gi|257076683|ref|ZP_05571044.1| DNA-directed RNA polymerase subunit D [Ferroplasma acidarmanus
fer1]
Length = 269
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 42/231 (18%)
Query: 11 NSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD-FCSECSVEFTLDVKCVDDQTR 69
+S L DE +ASRIGLIPL +D ++ + +C+C C C+V ++++
Sbjct: 59 SSLPLFDEILASRIGLIPLKTDLSMN---FRDECSCGGKGCDLCTVTYSIN--------- 106
Query: 70 HVTTADLKSTDARVVPVTSRNRDADMNEYGETDDIL-IVKLRKGQELRLRAYAKKGFGKE 128
+ + S+D ++PV + E TD ++ IV+L+K Q + + A G GKE
Sbjct: 107 KLGPGMVYSSD--IMPVNNP-------ELTVTDPLIPIVELKKNQAMLVTCEAILGRGKE 157
Query: 129 HAKWNPTAGVCFEYDPDNSMRHTLFPK----PDEWPKSEYSELDET---QHEAPYNW--- 178
HAKW T+GV ++Y + + D PKS SE D T + P ++
Sbjct: 158 HAKWQATSGVSYKYHRNFHVNKAALDNWQFYKDTCPKSVLSENDTTILFTDDIPCSYLSQ 217
Query: 179 ---------EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
E K+ F E+ G+LK +++ + L+ + + L L+
Sbjct: 218 LMERDGVVVEEDSTKFIFKFETDGSLKASDVLSYALHRLENRFTALMESLS 268
>gi|307594234|ref|YP_003900551.1| RNA polymerase insert [Vulcanisaeta distributa DSM 14429]
gi|307549435|gb|ADN49500.1| RNA polymerase insert [Vulcanisaeta distributa DSM 14429]
Length = 302
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 112/246 (45%), Gaps = 50/246 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT--CVDFCSECSVEFT 58
+AID V + N++VL DE +A R+ ++P+ +D + ++ +C VD S C V F
Sbjct: 40 LAIDEVIILDNTSVLYDEVLAHRLSMMPIKTD--LRKLPKIEECEQELVD-PSLCQVRFE 96
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
L+V+ + V + DLKS D V PV +DI IVKL GQ++ L
Sbjct: 97 LNVEA--KEPMIVYSRDLKSDDPEVRPVY--------------EDIPIVKLVPGQKIVLE 140
Query: 119 AYAKKGFGKEHAKWNPTAGVC-FEYDPDNSM---------------RHTLFPKPD----- 157
AYAK G + HAKW AG+ + Y P S+ L K D
Sbjct: 141 AYAKLGRARNHAKWQ--AGLASYYYYPKVSVVGKADDKCRVCLEVCNGALEIKEDGSIII 198
Query: 158 -EWPKSEYSELDETQHEAP---YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
+ K +++ + P +W+ NKY F VES G + E++V G +LK K
Sbjct: 199 NDVLKCTFNKWKTCEQLCPALKVDWDE--NKYVFWVESFGNMPVEDMVREGFRILKGKFQ 256
Query: 214 NLQTQL 219
+L
Sbjct: 257 EFVNEL 262
>gi|156099087|ref|XP_001615546.1| DNA-directed RNA polymerase I [Plasmodium vivax Sal-1]
gi|148804420|gb|EDL45819.1| DNA-directed RNA polymerase I, putative [Plasmodium vivax]
Length = 333
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 101/254 (39%), Gaps = 47/254 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRD--------CTCVDFCSE 52
+AI+ V + N+ +++DE + R+GLIP D D I + + C C
Sbjct: 86 IAIEKVNIFQNTGIIADEILCHRLGLIPFKFD--ADLINFKEEYEKYNHLNCFC------ 137
Query: 53 CSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET--DDILIVKLR 110
F L VK T + S D + P+ + D+ILI KL
Sbjct: 138 ----FKLHVKFTKKAGSSETCQSIYSRDLKWCPINEHQKARFQKNPPRVVDDNILITKLS 193
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSM----RHTLFPKPDE---WPKSE 163
GQE+ L + +KG GK HAKW+P ++ P S + T K D PK+
Sbjct: 194 NGQEIELICFLEKGIGKTHAKWSPVCTAVYKMYPAFSFNTCEKFTQEEKKDLVNICPKNV 253
Query: 164 Y--SELDETQHEAPYN----------------WEAKPNKYFFNVESAGALKPENIVIMGV 205
+ + D + P N +E N + F +ES G +I +
Sbjct: 254 FDVEDSDTLVAKNPLNCSSCRVCIEKYPKKISFEKVKNHFIFTIESTGCFSSADIFRKAL 313
Query: 206 TVLKQKLSNLQTQL 219
+LK K+ +++ L
Sbjct: 314 LILKDKVVSVKEVL 327
>gi|335774431|gb|AEH58393.1| DNA-directed RNA polymerases I and III subuni RPAC1-like protein,
partial [Equus caballus]
Length = 267
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 27/165 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARV-------------VPVTSRNRDADMNEYGET----DD 103
V+C TR+ A S + + VP+ ++ AD+ G DD
Sbjct: 144 VRC----TRNPHAAKDSSDPSELYVNHKVYTRHMIWVPLGNQ---ADLFPEGTIRPVHDD 196
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSM 148
ILI +LR GQE+ L + KG GK+HAK++P A + PD ++
Sbjct: 197 ILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITL 241
>gi|387595515|gb|EIJ93139.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm1]
Length = 297
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 117/236 (49%), Gaps = 36/236 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRILYSRDC-TCVDFCSECSVEFT 58
+AI WV + N TV++DE ++ R+GLIP+ +D E +R++ + + + + S++
Sbjct: 72 VAIHWVYIRENETVMADEILSHRLGLIPIIADAEDFERVVKTPELDPFTELTDKNSIQME 131
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
L + + T + T ++S D +++ T +A + + +++I +L G+++ R
Sbjct: 132 L---VITNNTDKILT--VRSNDIKILSKT----NAAIKQ-----NVIITRLVPGKKIECR 177
Query: 119 AYAKKGFGKEHAKWNPTAGVCF--------EYDPDNSMRHTLFPKPDEWPKSEYSELDET 170
+A G G+EH+KW PT+ VC+ DP + + + ++ + +DE
Sbjct: 178 LFAIIGTGREHSKWMPTS-VCYYRTIKKLEMKDPSKAAEIQKYFRDGFSVRNGQAIVDED 236
Query: 171 QHEAPYNWEAK-PNK---------YFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+ + E K PN+ + F +E A PE I+ G+ ++K KL L+
Sbjct: 237 KLLVNMDIEKKYPNEIKIHTESDSFLFEIEGITA-SPETILKKGIRIIKDKLKELK 291
>gi|240279628|gb|EER43133.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H143]
gi|325092757|gb|EGC46067.1| DNA-directed RNA polymerase I and III [Ajellomyces capsulatus H88]
Length = 380
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 113/282 (40%), Gaps = 62/282 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCT--CVDFCSEC---- 53
+AI+ V + N++V+ DE +A R+GL+PLT S E ++ + + R T D SE
Sbjct: 90 LAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGINWLRWFRQPTEGRPDSGSELADYN 149
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRN---RDADMNEYGET 101
+V L+V+C DD + A + + D PV + ++ D
Sbjct: 150 TVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKDITFHPVGRQETYFQEPDGVIRSAN 209
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL--------- 152
DIL+ KLR GQ++ + + KG G +HAK++P A + PD + +
Sbjct: 210 PDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIKIIRPILGNDALKFA 269
Query: 153 --FPKP-----------DEWPKSEYSE---------------------LDETQHEAPYNW 178
FPK P S Y L + +
Sbjct: 270 RCFPKGVIGIDSVSAEEASRPGSGYEGHEGEKKVVVVDPFKDTMSRECLRHDEFQGKVKL 329
Query: 179 EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+ + FNVES G + + + I V VLK K L+ LA
Sbjct: 330 GRIRDHFIFNVESTGQFRSDVLFIESVKVLKLKCRRLKRDLA 371
>gi|149732228|ref|XP_001502091.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Equus caballus]
Length = 346
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 112/264 (42%), Gaps = 55/264 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHVDP---RLFEYRNQGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARV-------------VPVTSRNRDADMNEYGET----DD 103
V+C TR+ A S + + VP+ ++ AD+ G DD
Sbjct: 144 VRC----TRNPHAAKDSSDPSELYVNHKVYTRHMIWVPLGNQ---ADLFPEGTIRPVHDD 196
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSE 163
ILI +LR GQE+ L + KG GK+HAK++P A + PD ++ + E
Sbjct: 197 ILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGDAAEELSRC 256
Query: 164 YS--------------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGAL 195
+S LD E + + K + Y F+VES G L
Sbjct: 257 FSPGVIEVQEVQGKKVARVANPRLDTFSREVFRHEKLKKVVRLARVRDHYIFSVESTGVL 316
Query: 196 KPENIVIMGVTVLKQKLSNLQTQL 219
P+ +V + VL K +L
Sbjct: 317 PPDVLVSEAIKVLMGKCRRFLDEL 340
>gi|167535426|ref|XP_001749387.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772253|gb|EDQ85908.1| predicted protein [Monosiga brevicollis MX1]
Length = 363
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 105/253 (41%), Gaps = 48/253 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N+++L DE A R+GLIP+ +D R R ++ F L
Sbjct: 87 MAIESVYIFNNTSMLPDELFAHRLGLIPIKADP---RHFTYRADDGGQPTDANTIVFNLK 143
Query: 61 VKCVD------DQTRH---VTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLR 110
C D T A + S D P + + N + DDI+I+K+R
Sbjct: 144 RVCTKKPNAPADATNPEDLYENAVIYSRDLEWAPQGQQEQVFGKNGFSVVYDDIVIMKMR 203
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----------------- 153
GQE+ ++ + +KG GK HAKW+P A + P+ ++ +
Sbjct: 204 PGQEVNMQLFCEKGVGKTHAKWSPVATASYRLMPEIILKEPIVGPLAHKLQKCFSPGVCD 263
Query: 154 ---------------PKPDEWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPE 198
P+ D + + D+ + + N + + F+VES GAL P+
Sbjct: 264 IVKNSKGEDEAKIVNPRADTVSREVFRH-DDLRDKVELNRVR--DHFIFSVESVGALAPD 320
Query: 199 NIVIMGVTVLKQK 211
+V+M + LK K
Sbjct: 321 VLVLMALQELKSK 333
>gi|355712707|gb|AES04439.1| polymerase I polypeptide C, 30kDa [Mustela putorius furo]
Length = 305
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 23/163 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 86 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 142
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 143 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDIL 197
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSM 148
I +LR GQE+ L + KG GK+HAK++P A + PD ++
Sbjct: 198 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITL 240
>gi|410929907|ref|XP_003978340.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Takifugu rubripes]
Length = 351
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 124/291 (42%), Gaps = 48/291 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTL 59
MAI+ V + N++++ DE +A R+GLIP+ +D + S D + SE +++ L
Sbjct: 88 MAIEKVFIYNNTSIVQDEVLAHRLGLIPIKADPRLFEYRNSGDEATENEGSEIDTIQLQL 147
Query: 60 DVKCVDDQTRHVTTADLK---------STDARVVPVTSRNRDADMNEYGET-DDILIVKL 109
+ C + ++D + S D VP+ ++ G DILI +L
Sbjct: 148 KISCSRNPASSKDSSDPRELYLNHMVYSKDIHWVPIGNQADVFANCSIGPVHGDILIAQL 207
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDE 169
R GQEL + + KG GK+HAK++P A + P+ ++ +P E K+E
Sbjct: 208 RPGQELDIIMHCIKGIGKDHAKFSPVATASYRLLPEITLL-----EPVEGEKAE------ 256
Query: 170 TQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT----QLAHDRVF 225
+ + FF G + E+ G V K S L T L HD +
Sbjct: 257 -----------RLQRCFFR----GVIDLED--SNGKKVAKVANSRLDTCSREVLRHDDLK 299
Query: 226 YVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
V+ + + + F VE+ G L P+ +V + VL K +L
Sbjct: 300 NVVKLGRHR-----DHFIFTVETTGILPPDVLVTEAIKVLMTKCQRFLNEL 345
>gi|7505021|pir||T34006 hypothetical protein H43I07.2 - Caenorhabditis elegans
Length = 697
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 113/268 (42%), Gaps = 49/268 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE---- 56
MA++ + L N++V+ DE + R+GL+PL D + + + +C E
Sbjct: 425 MALEKIYLYQNTSVIQDEVLCHRLGLLPLRVDPRGFQFPKEKVVGINEKGVDCDEEPEGD 484
Query: 57 ------FTLDVKCVDDQTRHVTTADLK------STDARV---VPVTSRNRDADMNEYGE- 100
F ++V C ++ T D K S +R VP+ + +
Sbjct: 485 PAKNLIFKINVSCTKNRNAVPTATDPKQLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRM 544
Query: 101 -TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW 159
+DDIL+ KLR GQE+ +A KG G++HAK++P A + P + + + E
Sbjct: 545 VSDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAER 604
Query: 160 PKSEYSE-------------------LDETQHEAPYNWE--------AKPNKYF-FNVES 191
KS +SE +T + E K ++F F+VES
Sbjct: 605 LKSVFSEGVIAIEKKGAKRIAVVKDARKDTCSRNVFRHEDLSKVVQLGKNKQHFIFSVES 664
Query: 192 AGALKPENIVIMGVTVLKQKLSNLQTQL 219
GALK +V+ V++ K +L+ Q+
Sbjct: 665 TGALKSSELVVEACKVMEIKCRSLRKQI 692
>gi|223477958|ref|YP_002582352.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. AM4]
gi|214033184|gb|EEB74012.1| DNA-directed RNA polymerase subunit D [Thermococcus sp. AM4]
Length = 260
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 103/244 (42%), Gaps = 54/244 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V+ N + L DE IA R+ +IPLT+ V+R +S D +D ++T+
Sbjct: 41 FAVDEVEFFENDSALFDEIIAHRLAMIPLTTP--VER--FSLDSLDLD-------DYTVT 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DLKS D V P +I IVKL +GQ+L AY
Sbjct: 90 LSLQAEGPGMVYSGDLKSDDEGVKPANP--------------NIPIVKLAEGQKLTFNAY 135
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE-----LDETQHEA- 174
A+ G GK+HAKW P F Y + H PD E +E ++E + E
Sbjct: 136 ARLGRGKDHAKWQP----GFVYYKYLTEIHVSKEVPDWEELKELAERRGLPVEEKEDEIV 191
Query: 175 ---------PYNWEAK----------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
P +E P + F VE+ G L E IV + + +L +K
Sbjct: 192 IKTTKAFYLPRKFEEYEGDKIREEIIPGAFVFTVETNGELPVEEIVSIALKILMRKSDRF 251
Query: 216 QTQL 219
+L
Sbjct: 252 INEL 255
>gi|417409648|gb|JAA51322.1| Putative rna polymerase i and iii subunit, partial [Desmodus
rotundus]
Length = 316
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 41/172 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 88 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 144
Query: 61 VKCVDDQ-------------------TRHVTTADLKST-----DARVVPVTSRNRDADMN 96
V+C + TRH+T L + D + PV
Sbjct: 145 VRCTRNSHAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPDGTIRPVH--------- 195
Query: 97 EYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSM 148
DDILI +LR GQE+ L + KG GK+HAK++P A + PD ++
Sbjct: 196 -----DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITL 242
>gi|126179746|ref|YP_001047711.1| DNA-directed RNA polymerase subunit D [Methanoculleus marisnigri
JR1]
gi|125862540|gb|ABN57729.1| DNA-directed RNA polymerase, subunit D [Methanoculleus marisnigri
JR1]
Length = 276
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 21/145 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTL 59
+AI+ V++ N++VL DE +A R+GLIPL +D + R +CTC D C C+ +TL
Sbjct: 39 LAIEDVRIYDNTSVLFDEMLAHRLGLIPLRTD--LKRYKPRSECTCEDAGCPVCTATYTL 96
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V + + V ++DL D P + I I++L + Q+L L A
Sbjct: 97 SV----EGPKTVYSSDLIPQDPDAAPADEK--------------IPIIELARDQKLVLEA 138
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDP 144
A G GKEHAKW T ++ P
Sbjct: 139 QAIVGTGKEHAKWQATTACGYKNYP 163
>gi|224009616|ref|XP_002293766.1| dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like
protein [Thalassiosira pseudonana CCMP1335]
gi|220970438|gb|EED88775.1| dna-directed RNA polymerase I 40kDa polypeptide, rpo1-1-like
protein [Thalassiosira pseudonana CCMP1335]
Length = 351
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 116/272 (42%), Gaps = 65/272 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC------S 54
MA++ V + NS+++ DE ++ R+GL+PL VD L+ VD E +
Sbjct: 83 MALEHVYMWNNSSLIHDEVLSHRLGLVPLN----VDPRLFDEYGVDVDEVGEVAATDRNT 138
Query: 55 VEFTLD-----------VKCVDDQ-----TRHVTTADL----KSTDARVVPVTSRNRDAD 94
+ F L+ K V D T+H+ T DL + + P+ S +
Sbjct: 139 IVFRLNEATSLHSSSNQQKTVIDSPHRPFTKHIYTRDLLWAPQGSQLTNFPLHSTGVGSG 198
Query: 95 MNEYGE--TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL 152
+ ++DIL+ KLR GQ + L A+A+KG GK+HAK++P A + P + +
Sbjct: 199 VGGGIRPISEDILLAKLRPGQVIELEAHARKGVGKDHAKFSPVATASYRLMPHIEIVKPI 258
Query: 153 F-------------------PKPDE----WPKSEYSE-----LDETQHEAPYNWEA---- 180
+ P DE K+E S + P E+
Sbjct: 259 YDELAEELVNWFEPGVFKLVPADDEDGGHKVKAELSNPYACTMSRNYMRNPTLKESIKMS 318
Query: 181 -KPNKYFFNVESAGALKPENIVIMGVTVLKQK 211
PN + F+VES G ++P IV + VLK+K
Sbjct: 319 RVPNHFIFSVESVGMMEPAVIVSEALKVLKEK 350
>gi|120538451|gb|AAI30019.1| Polr1c protein [Mus musculus]
Length = 347
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 112/262 (42%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 88 MAVEKVLVYNNTSIVQDEILAHRLGLIPILADP---RLFEYRNQGEEEGTEIDTLQFRLQ 144
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 145 VRC----TRNPNAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDIL 199
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + P ++ + + E +S
Sbjct: 200 IAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLEPVEGEAAEELSQCFS 259
Query: 166 ----ELDETQ---------------------HE---APYNWEAKPNKYFFNVESAGALKP 197
E++E Q HE + Y F+VES G L P
Sbjct: 260 PGVIEVEEVQGKKVARVANARLDTFSREIFRHEKLKKAVRLARVRDHYIFSVESTGVLPP 319
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + +L K +L
Sbjct: 320 DVLVSEAIKILMGKCRRFLDEL 341
>gi|395645094|ref|ZP_10432954.1| DNA-directed RNA polymerase subunit D [Methanofollis liminatans DSM
4140]
gi|395441834|gb|EJG06591.1| DNA-directed RNA polymerase subunit D [Methanofollis liminatans DSM
4140]
Length = 274
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 21/145 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTL 59
+AI+ +++ NS+VL DE +A R+GLIP+ +D + R + C+C C CSV FT+
Sbjct: 39 LAIEDLRIYDNSSVLFDEILAHRLGLIPIKTD--LTRFVKQDRCSCEGAGCPLCSVTFTM 96
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
V + V + DL S D PV DDI IVKL +GQ++ L A
Sbjct: 97 SV----EGPGIVYSGDLISDDPETRPVH--------------DDIPIVKLFEGQKVVLEA 138
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDP 144
A G EHAKW ++ P
Sbjct: 139 RAVLNTGTEHAKWQAVTACGYKTYP 163
>gi|307181041|gb|EFN68815.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Camponotus
floridanus]
Length = 344
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 116/274 (42%), Gaps = 62/274 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL-YSRDCTCVDFCSEC-SVEFT 58
MAID V + N+++L DE +A R+GLIPL +D R+ Y + SE ++++
Sbjct: 77 MAIDKVFIINNTSLLQDEVLAHRLGLIPLRAD---PRLFEYPPSGRKDEEVSEQDTLKYE 133
Query: 59 LDVKCV------------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET----- 101
L V C +D R+ + + S D + VP+ R DM +G
Sbjct: 134 LKVTCTTHPQAPKYSRLPEDMYRN---SKVYSKDIKWVPI---GRQGDMFPHGTEQFSVL 187
Query: 102 -DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----------DNSMR 149
+DILI K+R G E+ +A KG GK+HAK++P A + P D +
Sbjct: 188 ENDILICKMRPGHEIHAFMHAVKGIGKDHAKFSPVAPARYRLMPAIELTKPVRNEDADLL 247
Query: 150 HTLF-PKPDEWPKSEYSELDETQH----EAPYNWEAK-----------------PNKYFF 187
+ F P E + E S ++ + A Y+ A+ + F
Sbjct: 248 QSCFSPAVIEVVEKETSSGEKYREARVKNARYDSCARNVYRYEQLKDCVKMTRISDHVIF 307
Query: 188 NVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
N+ES G L P + V VLK K +L H
Sbjct: 308 NIESVGTLPPAVLFTEAVKVLKNKCRIFLAELEH 341
>gi|302414524|ref|XP_003005094.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
albo-atrum VaMs.102]
gi|261356163|gb|EEY18591.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
albo-atrum VaMs.102]
Length = 375
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 17/161 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILY-----SRDCTCVDFCSECSV 55
+AI+ V + N++V+ DE +A R+GL+P T+++ R + D T D +V
Sbjct: 91 LAIETVYIYNNTSVIQDEVLAHRLGLVPFTANKAGLRDFLRWRKKNPDGTPGDIFDYNTV 150
Query: 56 EFTLDVKCVD---------DQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGETD-D 103
+ L ++C D T+ A + ++D VP + D +N T+ D
Sbjct: 151 QLRLRIECTRNPDAAPGEIDSTKAFRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPTNPD 210
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
IL+ KLR GQ L + + KG G +HAK++P A + P
Sbjct: 211 ILLAKLRPGQVLEMDMHMHKGIGSDHAKFSPVATASYRLLP 251
>gi|242064360|ref|XP_002453469.1| hypothetical protein SORBIDRAFT_04g006420 [Sorghum bicolor]
gi|241933300|gb|EES06445.1| hypothetical protein SORBIDRAFT_04g006420 [Sorghum bicolor]
Length = 370
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 122/303 (40%), Gaps = 66/303 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ + + N++V++DE ++ R+GLIPL +D + + D +V + L
Sbjct: 108 MAIEKIFMVDNTSVIADEVLSHRLGLIPLRADPRLFDYISENDVPN----ERNTVVYKLH 163
Query: 61 VKCVDDQTR-HVTTADLK-----STDARVVPVTSRNRDADMNEYGETD------------ 102
V C R V +++L+ S + P S ++ + ++
Sbjct: 164 VSCPKGSQRITVKSSELEWLPEGSQLSMAAPAQSGDKQKTFTSFSQSQKEILEEPLGVKF 223
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK 161
DI I +L GQ + L A+A KG GK HAKW+P A + P+ + +
Sbjct: 224 KDITIARLGPGQAIELEAHAVKGVGKVHAKWSPVATAWYRMLPEVVILKDI--------- 274
Query: 162 SEYSELDETQHEAPYNWEAKPNKYFFNVESAG-------ALKPENIVIMGVTVLKQKLSN 214
E + +E + P N F++E G KP + V+ +
Sbjct: 275 -EGDDAEELVKKCPVN--------VFDIEDLGNGGKRAVVAKPRACTLCRECVMGPNGNQ 325
Query: 215 LQTQLAHDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT 274
++ + D + F +ES GAL PE + V +L++K + +
Sbjct: 326 VELRRVRDH------------------FIFTIESTGALPPEVLFTEAVKILEEKCERVIS 367
Query: 275 QLA 277
+L+
Sbjct: 368 ELS 370
>gi|365762578|gb|EHN04112.1| Rpc40p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 323
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 100/239 (41%), Gaps = 42/239 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
+A ++V N++V+ DE +A RIGL+PL D +L D D F E ++
Sbjct: 78 VAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDP---DMLTWVDSNLPDDEKFTDENTIVL 134
Query: 58 TLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIV 107
+L+VKC D A + + D + P ++ AD DIL+
Sbjct: 135 SLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLA 194
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPKP 156
KLR GQE+ L+A+ G G +HAK++P + + P ++ + FP
Sbjct: 195 KLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFPPG 254
Query: 157 ----DEWPKSEY---SELDETQHEAPYNWEAKP--------NKYFFNVESAGALKPENI 200
DE Y + D E E N + FNVESAGA+ PE I
Sbjct: 255 VIGIDEGSDEAYVKDARKDTVSREVLRYEEFADKVKLGRVRNHFIFNVESAGAMTPEEI 313
>gi|402867078|ref|XP_003897695.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases I and
III subunit RPAC1 [Papio anubis]
Length = 346
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 111/263 (42%), Gaps = 53/263 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ D +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEDGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG G +HAK +P A + PD ++ + + E +S
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGNDHAKISPVATASYRLLPDITLLEPVEGEAAEELSRCFS 258
Query: 166 ----ELDETQHEAPYNWEAKP-------------------------NKYFFNVESAGALK 196
E+ E Q + A P + Y F+VES G L
Sbjct: 259 PGVIEVQEVQGKKVARV-ANPRLDTFSREIFRHEKLKKVVRLARVRDHYIFSVESTGVLP 317
Query: 197 PENIVIMGVTVLKQKLSNLQTQL 219
P+ +V + VL K +L
Sbjct: 318 PDVLVSEAIKVLMGKCRRFLDEL 340
>gi|291000877|ref|XP_002683005.1| predicted protein [Naegleria gruberi]
gi|284096634|gb|EFC50261.1| predicted protein [Naegleria gruberi]
Length = 398
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 23/162 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTC---VDFCSECSVEF 57
MAI+ V N++++ DE +A RIGL+P+ D D ++RD + + F
Sbjct: 95 MAIEKVVYLTNTSIIQDEVLAHRIGLVPIRCDP--DFFFFARDINQNEDIILLDNEYILF 152
Query: 58 TLDVKCV--------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET------DD 103
L+V C + + + S D + VP+ N+ N GE DD
Sbjct: 153 ELNVTCEKTLVPNPHNQNKLEYKHSKVYSGDLKWVPIG--NQSTHFN--GENAIRPVYDD 208
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
IL+ KL GQ + ++ Y KG G+ HAKW P A + P+
Sbjct: 209 ILLAKLNPGQSIHVQCYCVKGIGRSHAKWQPVATATYRLMPE 250
>gi|154279942|ref|XP_001540784.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Ajellomyces capsulatus NAm1]
gi|150412727|gb|EDN08114.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Ajellomyces capsulatus NAm1]
Length = 380
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 120/282 (42%), Gaps = 62/282 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCT--CVDFCSEC---- 53
+AI+ V + N++V+ DE +A R+GL+PLT S E ++ + + R T D SE
Sbjct: 90 LAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSSEGINWLRWFRQPTEGRPDSGSELADYN 149
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRN---RDADMNEYGET 101
+V L+V+C DD + A + + D PV + ++ D
Sbjct: 150 TVVLHLNVECTNNPKASANEDDPQKRYNHAHVYAKDITFHPVGRQETYFQEPDGVIRSAN 209
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL--------- 152
DIL+ KLR GQ++ + + KG G +HAK++P A + PD + +
Sbjct: 210 PDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIKIIRPILGNDALKFA 269
Query: 153 --FPKP----DEWPKSEYS------ELDETQHEA----PYN------------WEAK--- 181
FPK D E S E E + +A P+ ++ K
Sbjct: 270 RCFPKGVIGIDSVSAEEASRAGSGYEGHEGEKKAVVVDPFKDTMSRECLRHDEFQGKVKL 329
Query: 182 ---PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+ + FNVES G + + + I V VLK K L+ LA
Sbjct: 330 GRIRDHFIFNVESTGQFRSDVLFIESVKVLKLKCRRLKRDLA 371
>gi|119226251|ref|NP_033111.2| DNA-directed RNA polymerases I and III subunit RPAC1 [Mus musculus]
gi|341942146|sp|P52432.3|RPAC1_MOUSE RecName: Full=DNA-directed RNA polymerases I and III subunit RPAC1;
Short=DNA-directed RNA polymerase I subunit C; Short=RNA
polymerases I and III subunit AC1; AltName: Full=AC40;
AltName: Full=DNA-directed RNA polymerases I and III 40
kDa polypeptide; Short=RPA40; AltName: Full=RPC40
gi|74205031|dbj|BAE20986.1| unnamed protein product [Mus musculus]
gi|74226711|dbj|BAE27005.1| unnamed protein product [Mus musculus]
gi|148691536|gb|EDL23483.1| RNA polymerase 1-1, isoform CRA_a [Mus musculus]
Length = 346
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 112/262 (42%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPILADP---RLFEYRNQGEEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 144 VRC----TRNPNAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + P ++ + + E +S
Sbjct: 199 IAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLEPVEGEAAEELSQCFS 258
Query: 166 ----ELDETQ---------------------HE---APYNWEAKPNKYFFNVESAGALKP 197
E++E Q HE + Y F+VES G L P
Sbjct: 259 PGVIEVEEVQGKKVARVANARLDTFSREIFRHEKLKKAVRLARVRDHYIFSVESTGVLPP 318
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + +L K +L
Sbjct: 319 DVLVSEAIKILMGKCRRFLDEL 340
>gi|148691537|gb|EDL23484.1| RNA polymerase 1-1, isoform CRA_b [Mus musculus]
Length = 323
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 112/262 (42%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 64 MAVEKVLVYNNTSIVQDEILAHRLGLIPILADP---RLFEYRNQGEEEGTEIDTLQFRLQ 120
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 121 VRC----TRNPNAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDIL 175
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + P ++ + + E +S
Sbjct: 176 IAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLEPVEGEAAEELSQCFS 235
Query: 166 ----ELDETQ---------------------HE---APYNWEAKPNKYFFNVESAGALKP 197
E++E Q HE + Y F+VES G L P
Sbjct: 236 PGVIEVEEVQGKKVARVANARLDTFSREIFRHEKLKKAVRLARVRDHYIFSVESTGVLPP 295
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + +L K +L
Sbjct: 296 DVLVSEAIKILMGKCRRFLDEL 317
>gi|575586|dbj|BAA06735.1| mouse RNA polymerase I 40kD subunit [Mus musculus]
Length = 355
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 112/262 (42%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 96 MAVEKVLVYNNTSIVQDEILAHRLGLIPILADP---RLFEYRNQGEEEGTEIDTLQFRLQ 152
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 153 VRC----TRNPNAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDIL 207
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + P ++ + + E +S
Sbjct: 208 IAQLRPGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPAITLLEPVEGEAAEELSQCFS 267
Query: 166 ----ELDETQ---------------------HE---APYNWEAKPNKYFFNVESAGALKP 197
E++E Q HE + Y F+VES G L P
Sbjct: 268 PGVIEVEEVQGKKVARVANARLDTFSREIFRHEKLKKAVRLARVRDHYIFSVESTGVLPP 327
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + +L K +L
Sbjct: 328 DVLVSEAIKILMGKCRRFLDEL 349
>gi|66812176|ref|XP_640267.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|74855077|sp|Q54SN4.1|RPAC1_DICDI RecName: Full=DNA-directed RNA polymerases I and III subunit rpac1;
Short=RNA polymerases I and III subunit AC1
gi|60468282|gb|EAL66291.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 345
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 102/241 (42%), Gaps = 35/241 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N+++L DE +A R+G+IP+ VD ++ ++ +E ++ F L
Sbjct: 97 MAIEKVYIINNTSILQDEVLAHRLGMIPIK----VDPRKFNFKLPNKEYTAEDTLIFQLK 152
Query: 61 VKCVDDQ-TRHVTTADLKSTDARVVPVTSRNRDADMNEYGE----TDDILIVKLRKGQEL 115
VKC D T + S VP T + NE DDI I+KLR GQ +
Sbjct: 153 VKCEKDSVTGKIINETALSKHLIWVP-TQDQEEMFPNEEDRPRPMEDDIPIMKLRPGQVI 211
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDP----DNSMR------------HTLFPKPDEW 159
++ Y +K G+EH KW+P + P D S++ +F D
Sbjct: 212 DIQCYCEKNIGREHIKWSPVCTASYRLQPVISVDKSIKGDKANQLLEKCPKKVFDIEDSG 271
Query: 160 PKSEYSELDET---------QHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQ 210
LD T + E E + + F++ES GALK I + + +
Sbjct: 272 QVVAARPLDCTMCRECIRDPEFEQNVKIERVRDHFIFSIESTGALKSREIFQEAIKIFIE 331
Query: 211 K 211
K
Sbjct: 332 K 332
>gi|320582291|gb|EFW96508.1| RNA polymerase III (C) subunit [Ogataea parapolymorpha DL-1]
Length = 335
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 105/252 (41%), Gaps = 37/252 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A ++V + N++V+ DE +A RIGL+PL D + + F E ++ +LD
Sbjct: 78 VAAEYVYIFNNTSVIQDEVLAHRIGLVPLKVDPDMLTWIDPNAEEEDKFTDENTIVLSLD 137
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-----------DILIVKL 109
V C + D ++ R V +R+ + N T DILI KL
Sbjct: 138 VACTKNPNAVPGNNDPENL-YRNSNVYARDLKFEPNGRQVTQFANCPVVPCDPDILIAKL 196
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP----------DNSMR-HTLFPK--- 155
R QE+ LR + G G +HAK++P + + P D++++ FP
Sbjct: 197 RPNQEISLRVHCVLGIGADHAKFSPVSTASYRLLPTIDILEPITGDDAVKFQKCFPSGVI 256
Query: 156 ----------PDEWPKSEYSE-LDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMG 204
D + E L + E K + + FNVES GA+ PE I
Sbjct: 257 GIDSNGAAYVADARKDTVSREVLRHKEFEGKVKLGRKRDHFIFNVESTGAMPPEEIFYKS 316
Query: 205 VTVLKQKLSNLQ 216
+ VLK K L+
Sbjct: 317 IRVLKTKAEYLR 328
>gi|385302721|gb|EIF46838.1| dna-directed rna polymerases i and iii 40 kda polypeptide [Dekkera
bruxellensis AWRI1499]
Length = 340
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 112/252 (44%), Gaps = 37/252 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI++V + N++V+ DE +A R+GL+PL D + + F E ++ +L+
Sbjct: 82 VAIEFVYMFNNTSVIQDEVLAHRLGLVPLKVDPDLLSWVDPNAEEKEKFTDENTIVLSLN 141
Query: 61 VKCV--------DDQTRHV-TTADLKSTDARVVPVTSRNRDADMNEYGETD-DILIVKLR 110
V C D++ ++ +++ + D + P + + D +IL+ KLR
Sbjct: 142 VSCTRNPNAVKGDNRPENLYKNSNVYAKDLKFEPQGRQVETFKDHPVVPCDPNILLAKLR 201
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPK-----PDEWPKSEYS 165
GQE+ LRA+ G +HAK++P A + P ++ + K D +P
Sbjct: 202 PGQEISLRAHCVLGIXADHAKFSPVATXSYRLLPLIDIKEPITGKDALEFQDCFPSGVIG 261
Query: 166 ELDETQ-----------------HEAPYNWEAKPNK----YFFNVESAGALKPENIVIMG 204
D+ + HE +N + K + + FNVES GA+ PE I
Sbjct: 262 INDKGEAYVKDARKDTVSREVLRHEK-FNGKVKLGRIRDHFIFNVESTGAMLPEEIFFKS 320
Query: 205 VTVLKQKLSNLQ 216
V VLK K L+
Sbjct: 321 VRVLKNKADYLR 332
>gi|3335138|gb|AAC39892.1| RNA polymerase I 40kD subunit [Homo sapiens]
gi|119624609|gb|EAX04204.1| polymerase (RNA) I polypeptide C, 30kDa, isoform CRA_a [Homo
sapiens]
Length = 342
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 23/163 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSM 148
I +LR GQE+ L + KG GK+HAK++P A + PD ++
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITL 241
>gi|332824146|ref|XP_003311364.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 2 [Pan troglodytes]
Length = 342
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 23/163 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G DDIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSM 148
I +LR GQE+ L + KG GK+HAK++P A + PD ++
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITL 241
>gi|312382270|gb|EFR27786.1| hypothetical protein AND_05113 [Anopheles darlingi]
Length = 259
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 19/145 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GLIPL +D R+ + ++ S+EF L
Sbjct: 79 MAIEKVHIYNNTSIIQDEVLAHRLGLIPLRADP---RMFEYKANETDPPTAQDSLEFELK 135
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC T + ST+ RN + I K+R G E ++ +
Sbjct: 136 VKC--------TRKNKDSTEVTNNDNMYRNHSIYSGQ--------INKMRPGHEFDIKLF 179
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPD 145
A KG GK+HAK++P A V + PD
Sbjct: 180 AVKGIGKDHAKFSPVATVSYRMLPD 204
>gi|345492750|ref|XP_003426918.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Nasonia vitripennis]
Length = 345
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 114/263 (43%), Gaps = 48/263 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTL- 59
MAI+ V + N++++ DE +A R+GL+PL +D R+ T D E S + TL
Sbjct: 83 MAIEKVYMINNTSLIQDEVLAHRLGLLPLKADP---RLFEYPSKTTADE-EEVSDQDTLR 138
Query: 60 -DVKCVDDQTRHV-----------TTADLKSTDARVVPVTSRNR---DADMNEYGETDDI 104
++K + H ++ S D + P+ +N D + DDI
Sbjct: 139 YEIKAICKWNPHAPKDSRRPDDIYCGNNVYSKDIKWNPIGRQNELYPDGEKQFGMIADDI 198
Query: 105 LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEY 164
LI K+R QE+ +A KG GK+HAK++P A + P+ + + + E KS +
Sbjct: 199 LICKMRPNQEIHAYMHAVKGIGKDHAKFSPVATATYRLLPEIQIIKPVRGEAAERFKSCF 258
Query: 165 S----ELDETQ-------HEAPYNWEAK-----------------PNKYFFNVESAGALK 196
S E+ ET A Y+ ++ P+ + F VES GAL
Sbjct: 259 SPGVIEIVETTKGKEARVKNARYDSCSRNVFRHDDLKDCVQLGRVPDHFIFTVESVGALP 318
Query: 197 PENIVIMGVTVLKQKLSNLQTQL 219
+ I V VLK+K +L
Sbjct: 319 SSVLFIEAVKVLKKKCKIFMEEL 341
>gi|448317558|ref|ZP_21507108.1| DNA-directed RNA polymerase subunit D [Natronococcus jeotgali DSM
18795]
gi|445602949|gb|ELY56919.1| DNA-directed RNA polymerase subunit D [Natronococcus jeotgali DSM
18795]
Length = 249
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ +F + +V ++D
Sbjct: 43 MAIDTVRFIENSSVMFDEQLALRLGLVPLTT------------PPEGEFVEDDTVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D+ V P AD N + I++L+ GQ L A
Sbjct: 91 VEG----PATAYSGDLVSSDSLVEP-------ADEN-------VPIIELKDGQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCFEY--------------DPDNSMRHTLFPKPDEW-PKSEYS 165
A+ GK+HAK V + + +P++ + + + E P SE+
Sbjct: 133 ARLERGKDHAKHQGGVAVGYRHLQRVEVVDDLPEFQEPESQIVRGVVEENGELVPTSEFD 192
Query: 166 ELDETQHEAP-YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
T+H E PN + F+VE+ G+ E +V V ++ + + L+
Sbjct: 193 HDLSTRHPGKEIRLEDVPNAFVFHVETDGSFSVEELVTRAVDSIEARATELE 244
>gi|325968486|ref|YP_004244678.1| RNA polymerase insert [Vulcanisaeta moutnovskia 768-28]
gi|323707689|gb|ADY01176.1| RNA polymerase insert [Vulcanisaeta moutnovskia 768-28]
Length = 317
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 102/235 (43%), Gaps = 42/235 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCT--CVDFCSECSVEFT 58
+AID V + N++VL DE +A R+ +IP+ +D + ++ +C VD S C V F
Sbjct: 57 LAIDEVIILDNTSVLYDEVLAHRLSMIPIKTD--LKKLPKIEECEQELVD-PSLCQVRFE 113
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
L+V+ + V DLKS D V PV +D+ IVKL GQ++ L
Sbjct: 114 LNVEAKEPVV--VYGRDLKSDDPEVRPVY--------------EDVPIVKLVPGQKIVLE 157
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDP--------DNSMRHTLFPKPDEWPKSEYSELDET 170
AYAK G + HAKW + Y D M T K + S +
Sbjct: 158 AYAKLGRARNHAKWQAGLAAYYYYPKVSVVDKANDKCMTCTEICNGALEIKDDGSIMIHD 217
Query: 171 QHEAPYN-WEA------------KPNKYFFNVESAGALKPENIVIMGVTVLKQKL 212
+ +N W+ NKY F VES G + E++V G +LK K
Sbjct: 218 VLKCTFNKWKTCEQVCSALKVDWDENKYVFWVESFGNMPVEDMVREGFRILKGKF 272
>gi|70943148|ref|XP_741656.1| DNA-directed RNA polymerase I [Plasmodium chabaudi chabaudi]
gi|56520171|emb|CAH77688.1| DNA-directed RNA polymerase I, putative [Plasmodium chabaudi
chabaudi]
Length = 297
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL--TSDEVVDRILYSRDCTCVDFCSECSVEFT 58
+AI+ V + N+ V++DE + R+GLIP +D + + Y + FC F
Sbjct: 86 IAIEKVNIFQNTGVIADEILCHRLGLIPFKFNADLINFKDTYEKYNNLNCFC------FK 139
Query: 59 LDVKCVDDQTRHVTTADLK---STDARVVPVTSRNRDADMNEYGET--DDILIVKLRKGQ 113
L VKC + + + S D + P+ + N + D+ILI KL GQ
Sbjct: 140 LHVKCNSINNNKIGNENYQCIYSKDLKWCPLNEEQKIKFENNPPKVVDDNILITKLGSGQ 199
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
E+ L + +KG GK HAKW+P ++ P
Sbjct: 200 EIELICFLEKGIGKTHAKWSPVCTAVYKMFP 230
>gi|346979352|gb|EGY22804.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Verticillium
dahliae VdLs.17]
Length = 375
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 17/161 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILY-----SRDCTCVDFCSECSV 55
AI+ V + N++V+ DE +A R+GL+P T+++ R + D T D ++
Sbjct: 91 FAIETVYIYNNTSVIQDEVLAHRLGLVPFTANKAGLRDFLRWRKKNPDGTPGDIFDYNTI 150
Query: 56 EFTLDVKCVD---------DQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGETD-D 103
+ L ++C D T+ A + ++D VP + D +N T+ D
Sbjct: 151 QLRLRIECTRNPDAAPGEIDATKAFRNAHVHASDIEYVPSGRQLEYFDGPLNTVRPTNPD 210
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
IL+ KLR GQ L + + KG G +HAK++P A + P
Sbjct: 211 ILLAKLRPGQVLEMDMHMHKGIGSDHAKFSPVATASYRLLP 251
>gi|218191485|gb|EEC73912.1| hypothetical protein OsI_08749 [Oryza sativa Indica Group]
Length = 332
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 101/239 (42%), Gaps = 33/239 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V++DE ++ R+GLIPL +D + D ++ + L
Sbjct: 108 MAIEKVLMVDNTSVIADEVLSHRLGLIPLDADPRHFEYMSENDVPN----ERNTIVYKLH 163
Query: 61 VKCVDDQTR-HVTTADLK-----STDARVVPVTSRNRDADMNEYGETD------------ 102
V C R V + DL+ S P SR + + ++
Sbjct: 164 VSCKKGSPRLTVKSGDLEWLPEGSRLPLASPAQSRYKQKTYTSFSQSQKDILEKPLGVKF 223
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK 161
DI I +L GQ + L + KG GK HAKW+P A + P+ R + K
Sbjct: 224 KDITIARLGPGQAIVLEVHGVKGMGKVHAKWSPVATAWYRMFPEVVFRKEI--------K 275
Query: 162 SEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+ +E + + P N + +ES G L PE + V +L++K + ++L+
Sbjct: 276 GDNAE--KLVKKCPVNVFDIEDLGNVTIESTGGLPPEALFTEAVRILEEKCERVISELS 332
>gi|193704512|ref|XP_001945905.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Acyrthosiphon pisum]
Length = 325
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 109/249 (43%), Gaps = 39/249 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++ + DE +A R+GLIPL +D R ++ + S+ + +
Sbjct: 70 MAIEKVHIYQNTSYILDEILAHRLGLIPLKADP---RQFKMKEDENSEPNEHDSLVYEMK 126
Query: 61 VKCVDDQT-----RHVTTADLKSTDARVVPVTSRNRDADMNEYG-ETDDILIVKLRKGQE 114
+KC + + + + + +P+ ++ + G +DDILI KLR GQE
Sbjct: 127 IKCTKKDLDALAHKQFISFPVYAKHIKWLPLGNQKDIFTEKDVGIISDDILIAKLRPGQE 186
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----------DNSMRHTLFPKPDEWPKS- 162
+ L+ +A KG K+HAK+ + P D + + FPK KS
Sbjct: 187 IELKMFAVKGIPKDHAKFQSVCTAWYRMMPNIKLLDEIKGNDAVLLQSCFPKGVIGLKSV 246
Query: 163 --------EYSELDETQHEAPYNWEAKPNK---------YFFNVESAGALKPENIVIMGV 205
E S D + + ++ NK + F +ES GA+ P I + +
Sbjct: 247 KGVLIAFVEDSRKDNSSRNV-FRYKQFDNKILLSKIQDHFIFTIESVGAMDPSLIFLEAL 305
Query: 206 TVLKQKLSN 214
+L +K+++
Sbjct: 306 NILTRKVNS 314
>gi|388858416|emb|CCF48010.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Ustilago hordei]
Length = 401
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 111/268 (41%), Gaps = 60/268 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++++ DE ++ R+GL+PL + D++L D + +V F+L
Sbjct: 134 VAIEHVYIWNNTSIIQDEVLSHRLGLVPLAINP--DKVLIRMPGDNADDSN--TVVFSLK 189
Query: 61 VKCVDDQTRHVTTADLKSTDARVV-------------PVTSRNRD-ADMNEYGETDDILI 106
KC R+ A +S ++ P ++ D AD ILI
Sbjct: 190 AKC----ERNPNAARGESDPDKLYIGHNVYSEQLVWDPKGDQDEDFADAPPKPVHAKILI 245
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE-------- 158
KLR GQEL L + +KG G++HAK++P A + P H KP E
Sbjct: 246 AKLRPGQELDLELHCEKGIGRDHAKFSPVATATYRLLP-----HIQLLKPVEGEQVDKLL 300
Query: 159 --WPKSEYSELDETQHEAPYNWEAKP-----------------------NKYFFNVESAG 193
+P E ++ Y +A+ + + F +ES G
Sbjct: 301 KCFPPGVIGAEGEGKNRKAYVKDARKDTISREVLRHAEFEDKVKLGRVRDHFLFELESTG 360
Query: 194 ALKPENIVIMGVTVLKQKLSNLQTQLAH 221
+ PE ++ + L+ K++ L+ L H
Sbjct: 361 IIPPEKLLPEAIKTLRGKIATLRKSLDH 388
>gi|242398333|ref|YP_002993757.1| DNA-directed RNA polymerase subunit D [Thermococcus sibiricus MM
739]
gi|242264726|gb|ACS89408.1| DNA-directed RNA polymerase subunit D [Thermococcus sibiricus MM
739]
Length = 271
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 106/242 (43%), Gaps = 50/242 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
AID V+ N + L DE IA R+ LIPLT+ DR + S ++T+
Sbjct: 52 FAIDEVEFYENDSALFDEIIAHRLSLIPLTTP--FDRF---------ELESMELEDYTVT 100
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V + DLKS D V PV +I IVKL +GQ L AY
Sbjct: 101 LSLEAEGPAIVYSGDLKSDDPDVKPVNP--------------NIPIVKLAEGQRLVFNAY 146
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE---LDETQHE---- 173
AK G GK+HAKW P ++Y + + + PK ++ K+ + ++ET++E
Sbjct: 147 AKMGKGKDHAKWQP-GFAHYKYLTEVHVSKEV-PKWEDIKKAAKKKKLPVEETENELIIT 204
Query: 174 ------APYNW----------EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT 217
P + E PN + F VES G L E ++ + + +L +K
Sbjct: 205 TIRSFYIPREFEQYIGEKIKEEVVPNTFVFTVESNGELPVEEMISVALKILMRKSDKFIN 264
Query: 218 QL 219
+L
Sbjct: 265 EL 266
>gi|328785531|ref|XP_625072.3| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Apis mellifera]
Length = 510
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 24/163 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
MAI+ V + N++++ DE +A R+GLIPL +D R+ T D + ++ +
Sbjct: 80 MAIEKVYIVNNTSLIQDEVLAHRLGLIPLRADP---RLFEYPSSTAKDQDEVSDQDTLRY 136
Query: 58 TLDVKCV------DDQTR---HVTTADLKSTDARVVPVTSRNRDADMNEYGET------D 102
L + C D R +++ S D + VP+ A++ G +
Sbjct: 137 ELKISCTWNSQAPKDSRRTNDMYRNSNVYSRDIKWVPI---GHQAELYPRGTEQLSVLEN 193
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DILI K+R GQE+ +A KG GK+HAK++P A + PD
Sbjct: 194 DILICKMRPGQEIHAFMHAVKGIGKDHAKFSPVATASYRLLPD 236
>gi|393219179|gb|EJD04666.1| hypothetical protein FOMMEDRAFT_80006 [Fomitiporia mediterranea
MF3/22]
Length = 387
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 108/265 (40%), Gaps = 61/265 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++V+ DE +A R+GL+PL +D L+ D ++ F L+
Sbjct: 92 IAIESVYVWNNTSVIHDEVLAHRLGLVPLN----LDPGLFEMREEGKDATDRSTLVFKLE 147
Query: 61 VKCV-------------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-DILI 106
V+C D H+ TA + R P + + G T+ +I++
Sbjct: 148 VECKRKAGAPAESANPDDLYENHLVTAGM----LRWEPQGEQADVPQLKPPGPTNPNIVL 203
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKP---------- 156
KLR GQ + + +A K GKEHAKW+P A + P T+ +P
Sbjct: 204 AKLRPGQVIDMECHAIKNVGKEHAKWSPVATASYRIHP----HITILKQPPSGSARKFAD 259
Query: 157 ----------DEWPKSEYSELDE---------------TQHEAPYNWEAKPNKYFFNVES 191
E SE E+DE ++ E + + FN+ES
Sbjct: 260 CFSPGVIKVIGEGTASEAVEVDEKRVREESMSREVFRHSEFEGCVKLGRVRDWFLFNIES 319
Query: 192 AGALKPENIVIMGVTVLKQKLSNLQ 216
G P ++ + VL+ ++S L+
Sbjct: 320 EGPYAPRDLFPAAIRVLRARVSTLK 344
>gi|351707955|gb|EHB10874.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Heterocephalus glaber]
Length = 346
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 112/262 (42%), Gaps = 51/262 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEFRNEGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR-----------NRDADMNEYGET----DDIL 105
V+C TR+ A S+D + V + AD+ G +DIL
Sbjct: 144 VRC----TRNPHAAK-DSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGMIRPVHNDIL 198
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
I +LR GQE+ L + KG GK+HAK++P A + PD ++ + + E +S
Sbjct: 199 IAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPDITLLEPVEGEVAEELSCCFS 258
Query: 166 ----ELDETQ---------------------HE---APYNWEAKPNKYFFNVESAGALKP 197
E+ E Q HE + Y F+VES G L P
Sbjct: 259 PGVIEVQEVQGKKVARVANPRLDTFSREIFRHEKLKKAVQLTRVRDHYIFSVESTGVLPP 318
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ +V + VL K +L
Sbjct: 319 DVLVSEAIKVLMGKCQRFLDEL 340
>gi|225461965|ref|XP_002270559.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Vitis vinifera]
gi|296089944|emb|CBI39763.3| unnamed protein product [Vitis vinifera]
Length = 372
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 116/274 (42%), Gaps = 58/274 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GLIP+ +D + L D + ++ F L
Sbjct: 103 MAIEKVLIANNTSIVQDEVLAHRLGLIPINADPRLFDDLSENDTPN----EKNTIVFNLH 158
Query: 61 VKCVDDQTR-HVTTADLK-STDARVVPVTSRNRDA-----------------DMNEYGET 101
V+C R V + +LK P+ + N + + E+ +
Sbjct: 159 VRCERGGPRLTVKSNELKWLPHGSEFPLATENTTSSSTSKPKTYTSFSCSQDSLPEFSDK 218
Query: 102 D------DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-P 154
DI+I KL GQE+ L A+A KG GK HAKW+P A + P+ + +
Sbjct: 219 SIGPKHPDIIIAKLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLQEIEDE 278
Query: 155 KPDEWPKS------EYSELDETQHEAPY----------------NWEAK------PNKYF 186
K +E K + ++ + + +A +W+ N +
Sbjct: 279 KAEELVKKCPVNVFDIEDIAKGKKKATVARPRACTLCRECIRGDDWDKHVAIRRVKNHFI 338
Query: 187 FNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
F +ES GAL PE + V VL+ K + T+L+
Sbjct: 339 FTIESTGALPPEVLFNEAVKVLEDKCERVITELS 372
>gi|392573616|gb|EIW66755.1| hypothetical protein TREMEDRAFT_34640 [Tremella mesenterica DSM
1558]
Length = 347
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 113/264 (42%), Gaps = 45/264 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++++ DE + R+GL+PL D R + R +V F L
Sbjct: 86 VAIEDVYVWNNTSIMQDEVLCHRLGLVPLRIDP---REMIFRANPNAGALDTDTVVFQLR 142
Query: 61 VKCVDDQ--TRHVTTADLKSTDARVV-------PVTSRNRDADMNEYGETD-DILIVKLR 110
VKC D Q T+ T K D+ V P ++ E D DIL+ KLR
Sbjct: 143 VKC-DRQPGTQGETDPKRKYWDSDVYTGMLEWEPAGAQKTKWKRKEPKPVDPDILLCKLR 201
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FP----- 154
GQ + L +A+KG G +HAK++P A + P +R + FP
Sbjct: 202 PGQLIDLTCFARKGTGADHAKFSPVATASYRLLPHIIIRSPIPVEHQQKFVQSFPPGVIG 261
Query: 155 -------KPDEWPKSEYSE------LDETQHEAPYNWEAKPNKYFFNVESAGALKPENIV 201
+P K+ + L + E + + FN+ES G KPE++V
Sbjct: 262 IEKDKRGQPQCVVKNSRRDTVSREVLRHAEFEDKVQLTRIRDHFIFNIESVGQYKPEDLV 321
Query: 202 IMGVTVLKQKLSNLQTQLAHDRVF 225
+ +L K+S ++ L D++F
Sbjct: 322 PEAIKILLNKISAVEAGL--DKLF 343
>gi|255563568|ref|XP_002522786.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
communis]
gi|223538024|gb|EEF39637.1| DNA-directed RNA polymerase I/III subunits, putative [Ricinus
communis]
Length = 374
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 120/294 (40%), Gaps = 49/294 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GLIP+ +D + L + D + ++ F L
Sbjct: 113 MAIEKVLIANNTSLIQDEVLAHRLGLIPINADPRLFEYLSANDTPN----EKNTIVFKLH 168
Query: 61 VKCVDDQTRH-VTTADLK-------------STDARVVPVTSRNRDADMNEYGET---DD 103
C + R V + +LK D++ TS D + D
Sbjct: 169 ASCKRGEPRRTVYSEELKWLPGGSQLLKESEKADSKPSTYTSFTDKQDFIPKPVSPSEDK 228
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSE 163
I++ KL GQE+ L A+A KG GK HAKW+P A + P+ + E
Sbjct: 229 IIVAKLGPGQEIELEAHAVKGLGKTHAKWSPVATAWYRMLPEVVLLED----------IE 278
Query: 164 YSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDR 223
+E + P N F++E G K TV + + L +
Sbjct: 279 DEIAEELTKKCPVN--------VFDIEDIGNGKKR------ATVARPRACTLCRECIRGG 324
Query: 224 VFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 277
+ + + + + F +ES GAL PE + V VL+ K + T+L+
Sbjct: 325 EW----DKRVSLRRVKDHFIFTIESTGALPPEVLFTEAVKVLEDKCERVITELS 374
>gi|435847148|ref|YP_007309398.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Natronococcus occultus SP4]
gi|433673416|gb|AGB37608.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Natronococcus occultus SP4]
Length = 249
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 103/232 (44%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ +F + +V ++D
Sbjct: 43 MAIDTVRFIENSSVMFDEQLALRLGLVPLTT------------PPEGEFVEDDTVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D+ V P AD N + I++L++GQ L A
Sbjct: 91 VEG----PATAYSGDLVSSDSLVEP-------ADEN-------VPIIELKEGQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCFEY--------------DPDNSMRHTLFPKPDEW-PKSEYS 165
A+ GK+HAK V + + +P++ + + + E P SE+
Sbjct: 133 ARLERGKDHAKHQGGVAVGYRHLQRVEVVDDLPEFQEPESRIVRGVVEENGELVPTSEFD 192
Query: 166 ELDETQHEAP-YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
T+H E PN + F+VE+ G+ E +V L+ + + L+
Sbjct: 193 HDLSTRHPGKEVRLEDVPNAFVFHVETDGSFSVEELVTRATDSLEARATELE 244
>gi|448491314|ref|ZP_21608255.1| DNA-directed RNA polymerase subunit D [Halorubrum californiensis
DSM 19288]
gi|445693085|gb|ELZ45247.1| DNA-directed RNA polymerase subunit D [Halorubrum californiensis
DSM 19288]
Length = 250
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 58/242 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID VQ NS+V+ DE I R+GL+PLT+ DF V LD
Sbjct: 44 FSIDTVQFVENSSVMFDEMIGLRLGLVPLTT-------------PLDDFELGDEVTLALD 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + D++S+D +V V D++ I++L++GQ L A
Sbjct: 91 VEG----PATAYSGDIESSDP-LVEVAD-------------DNVPIIELKEGQRLEFEAN 132
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPD--NSMRHTLFPKPDEWPKSEYS 165
A GKEHAK V + E+D D N +R + E P+ +
Sbjct: 133 AVLDTGKEHAKHQGGVSVGYRHLQRVSVEGDRGEFDDDEPNILRGVI-----EAPEGDIE 187
Query: 166 ELDETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
DE ++ + K P + F++E+ G+ E +++ + ++++ LQT+
Sbjct: 188 LTDEFDNDLSERFPGKEVAVEEVPGAFVFHIETDGSFDVEELLLRAIDSIEERADELQTK 247
Query: 219 LA 220
+A
Sbjct: 248 VA 249
>gi|323302589|gb|EGA56396.1| Rpc40p [Saccharomyces cerevisiae FostersB]
Length = 323
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 99/239 (41%), Gaps = 42/239 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
+A ++V N++V+ DE +A RIGL+PL D +L D D F E ++
Sbjct: 78 VAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDP---DMLTWVDSNLPDDEKFTDENTIVL 134
Query: 58 TLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIV 107
+L+VKC D A + + D + P ++ AD DIL+
Sbjct: 135 SLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLA 194
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FPKP 156
KLR GQE+ L+A+ G G +HAK++P + + P ++ + FP
Sbjct: 195 KLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFPPG 254
Query: 157 ----DEWPKSEY---SELDETQHEAPYNWEAKP--------NKYFFNVESAGALKPENI 200
DE Y + D E E N + FNVES GA+ PE I
Sbjct: 255 VIGIDEGSDEAYVKDARKDTVSREVLRYEEFADKVKLGRVRNHFIFNVESXGAMTPEEI 313
>gi|448534354|ref|ZP_21621682.1| DNA-directed RNA polymerase subunit D [Halorubrum hochstenium ATCC
700873]
gi|445704836|gb|ELZ56743.1| DNA-directed RNA polymerase subunit D [Halorubrum hochstenium ATCC
700873]
Length = 250
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 58/242 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V+ NS+V+ DE I R+GLIPLT+ DF V LD
Sbjct: 44 FSIDTVRFVENSSVMFDEMIGLRLGLIPLTT-------------PLDDFEVGDEVTLALD 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + D++S+D +V V N + I++L++GQ L A
Sbjct: 91 VEG----PATAYSGDIESSDP-LVEVADEN-------------VPIIELKEGQRLEFEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPD--NSMRHTLFPKPDEWPKSEYS 165
A GKEHAK V + E+D D N +R + E P E
Sbjct: 133 AVLDTGKEHAKHQGGVSVGYRHLQRVTVEGDRGEFDDDEPNILRGVI-----ETPDGEIE 187
Query: 166 ELDETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
DE ++ + K P + F++E+ G+ E +++ + ++++ LQT+
Sbjct: 188 LTDEFDNDLSERFPGKEVAVEDVPGAFVFHIETDGSFDVEELLLRAIDSIEERADELQTK 247
Query: 219 LA 220
+A
Sbjct: 248 VA 249
>gi|448499366|ref|ZP_21611293.1| DNA-directed RNA polymerase subunit D [Halorubrum coriense DSM
10284]
gi|445697321|gb|ELZ49386.1| DNA-directed RNA polymerase subunit D [Halorubrum coriense DSM
10284]
Length = 250
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 58/242 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID VQ NS+V+ DE I R+GL+PLT+ DF V LD
Sbjct: 44 FSIDTVQFVENSSVMFDEMIGLRLGLVPLTT-------------PLDDFEIGDEVTLALD 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + D++S+D +V V N + I++L++GQ L A
Sbjct: 91 VEG----PATAYSGDIESSDP-LVEVADEN-------------VPIIELKEGQRLEFEAT 132
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPD--NSMRHTLFPKPDEWPKSEYS 165
A GKEHAK V + E+D D N +R + E P +
Sbjct: 133 AVLDTGKEHAKHQGGVSVGYRHLQRVSVEGDRGEFDDDEPNILRGVI-----ETPDGDVE 187
Query: 166 ELDETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
DE ++ + K P + F++E+ G+ E +++ + ++++ LQT+
Sbjct: 188 LTDEFDNDLSERFPGKEVAVEDVPGAFVFHIETDGSFSVEELLLRAIGSIEERADELQTK 247
Query: 219 LA 220
+A
Sbjct: 248 VA 249
>gi|48478294|ref|YP_024000.1| DNA-directed RNA polymerase subunit D [Picrophilus torridus DSM
9790]
gi|55976419|sp|Q6KZP5.1|RPOD_PICTO RecName: Full=DNA-directed RNA polymerase subunit D
gi|48430942|gb|AAT43807.1| DNA-directed RNA polymerase subunit D [Picrophilus torridus DSM
9790]
Length = 271
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 43/233 (18%)
Query: 11 NSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTC-VDFCSECSVEFTLDVKCVDDQTR 69
+S L DE +A R+GLIPL +D ++ + C+C + C C+V+++++
Sbjct: 60 SSLPLFDEVVALRLGLIPLKTDL---KMNFRDQCSCNGEGCDLCTVKYSIN--------- 107
Query: 70 HVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEH 129
+ AD+ S+D ++P+ + D+ I IVKL+KGQ + + A G GK+H
Sbjct: 108 KLGPADVFSSD--LIPIN----NPDLKPVDPM--IPIVKLKKGQAMLVTCEAIMGRGKDH 159
Query: 130 AKWNPTAGVCFEYDPD-----NSMRHTLFPKPDEWPKSEYSE-------LDETQ------ 171
AKW T+GV ++Y + N + + F K D+ PKS SE D+ +
Sbjct: 160 AKWQVTSGVSYKYHREFKINKNELENWSFYK-DKCPKSVISENENEITFTDDVECRYLQQ 218
Query: 172 ---HEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
++ K+ F E+ G+L + + LK++ +NL L+
Sbjct: 219 LFDEKSGVTITEDDTKFIFQFETDGSLTAIETLDYALKRLKERFNNLMESLSE 271
>gi|384488271|gb|EIE80451.1| hypothetical protein RO3G_05156 [Rhizopus delemar RA 99-880]
Length = 247
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILY-SRDCTCVDFCSECSVEFTL 59
MAI+ V + N++++ DE +A R+GLIP+ +D + Y + D D ++ F L
Sbjct: 81 MAIEKVYVMNNTSIIQDEVVAHRLGLIPILADP--NEFDYMAEDGGPTDL---NTLVFRL 135
Query: 60 DVKC----------VDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVK 108
KC D +++ + + S D P ++ N DDI+I K
Sbjct: 136 KKKCEFNPEASPDETDPHKKYINSY-VYSKDLIWEPKGNQEEKFAANPPRPVHDDIVIAK 194
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
LR GQE+ + + +KG G+EHAKW+P A + P+
Sbjct: 195 LRPGQEMEMELHCQKGVGREHAKWSPVATASYRLLPE 231
>gi|384495741|gb|EIE86232.1| hypothetical protein RO3G_10943 [Rhizopus delemar RA 99-880]
Length = 247
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 16/156 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GLIP+ +D + + D D ++ F L
Sbjct: 81 MAIEKVYVMNNTSIIQDEVVAHRLGLIPILADP-KEFDYMTEDGGPTDL---NTLVFRLK 136
Query: 61 VKC----------VDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKL 109
KC D +++ + + S D P ++ N DDI+I KL
Sbjct: 137 KKCEFNPEASPDETDPHKKYINSY-VYSKDLIWEPKGNQEEKFANNPPRPVHDDIVIAKL 195
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
R GQE+ + + +KG G+EHAKW+P A + P+
Sbjct: 196 RPGQEMEMELHCQKGVGREHAKWSPVATASYRLLPE 231
>gi|343427703|emb|CBQ71230.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Sporisorium reilianum SRZ2]
Length = 402
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 114/266 (42%), Gaps = 56/266 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++++ DE ++ R+GL+PL + D++L D + +V F L
Sbjct: 136 VAIEHVYIWNNTSIIQDEVLSHRLGLVPLAINP--DKVLMRNAGDDADDSN--TVVFHLK 191
Query: 61 VKCVDDQTR-------------HVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILI 106
KC +++ H ++ DA+ ++ D AD D ILI
Sbjct: 192 AKCERNRSAARGETDPDKLYIGHNVYSEQLQWDAK----GGQDEDFADAPPRPVHDKILI 247
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKS---- 162
KLR GQEL L + +KG GK+HAK++P A + P + L P P E S
Sbjct: 248 AKLRPGQELDLELHCEKGIGKDHAKFSPVATATYRLLPHIQL---LQPIPAEHIDSFVKC 304
Query: 163 -------------------EYSELDETQHEA--PYNWEAK------PNKYFFNVESAGAL 195
+ + D E + +E K + + F++ES G +
Sbjct: 305 FPPGVIGVEGSGDQRKVFVKDARRDTISREVFRHHEFEDKVKLGRVRDHFLFDLESTGII 364
Query: 196 KPENIVIMGVTVLKQKLSNLQTQLAH 221
PE ++ + L+ K+S L+ L H
Sbjct: 365 PPEKLLPEAIKTLRSKISTLRKSLDH 390
>gi|330506856|ref|YP_004383284.1| DNA-directed RNA polymerase subunit D [Methanosaeta concilii GP6]
gi|328927664|gb|AEB67466.1| DNA-directed RNA polymerase subunit D [Methanosaeta concilii GP6]
Length = 264
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 49/247 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD-FCSECSVEFTL 59
+AID + L N++VL DE I RIG +PL +DE +D DC C C C V+F L
Sbjct: 39 LAIDEINLYDNTSVLFDEQIGLRIGEVPLVADE-LDLFSQPEDCQCGGTGCPGCRVDFML 97
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+ V + D++ TD V P D I +V L +G++L +
Sbjct: 98 S----KEGPGMVYSEDIQFTDPGVRPA--------------FDKIPLVILGEGEKLVMEG 139
Query: 120 YAKKGFGKEHAKWNP-------------------TAGVCFEYDPDNSMRHTLFPKPDEWP 160
YA K GKEH+KW G C E P R L +
Sbjct: 140 YATKRVGKEHSKWQAGTLCGYKNLPSITVSEACDGCGKCVEACP----RDILVIEEGRAK 195
Query: 161 KSEYSELDETQ------HEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSN 214
+ E + A + + + + ++E +G++ +++V V +K + +
Sbjct: 196 ATNILECSLCKLCVGACEAAAIDLKPIHDSFVVSIEGSGSVAAKDLVARAVDEIKMRALD 255
Query: 215 LQTQLAH 221
L ++LA
Sbjct: 256 LDSKLAE 262
>gi|336263008|ref|XP_003346286.1| hypothetical protein SMAC_05823 [Sordaria macrospora k-hell]
gi|380093615|emb|CCC08579.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 378
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 25/162 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL--YSRDCTCVDFCSECSVEF 57
+AI+ + + N++V+ DE + R+GLIP T E + L Y + T D+ + VE
Sbjct: 101 LAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEGLHNFLKWYKKGETPCDYNT---VEL 157
Query: 58 TLDVKCVDDQTRHVTTADLK---------STDARVVPVTSRNRDADMNEYGET------D 102
L VKC ++Q + D K + D + VP + R A GE
Sbjct: 158 ELKVKCENNQNAPTDSKDPKELYHNAHVYAKDIKFVP---KGRQAKYFS-GENVIRPTNP 213
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DIL+ K+R GQE+ L + KG G +HAK++P A + P
Sbjct: 214 DILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVATASYRLMP 255
>gi|159129762|gb|EDP54876.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus fumigatus A1163]
Length = 414
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 18/163 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSECS----- 54
+AI++V + N++V+ DE +ASR+GLIPL S E ++ + + + T D S +
Sbjct: 130 LAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSVEGLNWMRWFKKPTEDDPESGSTPADYN 189
Query: 55 -VEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGETD 102
+ LDV+C DD + A + + D PV + + D
Sbjct: 190 TIVLRLDVECTENPNAAPGEDDPRKLYKNAHVYAKDITFHPVGRQEQFFTGDGAIQPVNP 249
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DILI KLR GQ++ + + KG G +HAK++P A + PD
Sbjct: 250 DILIAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMPD 292
>gi|159041731|ref|YP_001540983.1| RNA polymerase insert [Caldivirga maquilingensis IC-167]
gi|157920566|gb|ABW01993.1| RNA polymerase insert [Caldivirga maquilingensis IC-167]
Length = 305
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 70/143 (48%), Gaps = 18/143 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRILYSRDCTCVDFCSECSVEFTL 59
+AID V + N+TV+ DE +A R+ +IPL ++ E + +I D VD S C V + L
Sbjct: 43 LAIDRVIVLDNTTVMYDEVLAHRLSMIPLKTNLEKLPKIEECED-ELVD-PSLCQVRYQL 100
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+K +DQ V DL D PV D LIVK+ KGQ L + A
Sbjct: 101 SIK-ANDQVVSVYAKDLIPDDPDFAPVYP--------------DTLIVKMSKGQVLSIEA 145
Query: 120 YAKKGFGKEHAKWNPTAGVCFEY 142
YAK G ++HAKW + Y
Sbjct: 146 YAKLGRARDHAKWQACLASYYYY 168
>gi|387592898|gb|EIJ87922.1| RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein
[Nematocida parisii ERTm3]
Length = 297
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 116/236 (49%), Gaps = 36/236 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRILYSRDC-TCVDFCSECSVEFT 58
+AI WV + N TV++DE ++ R+GLIP+ D + +R++ + + + + S++
Sbjct: 72 VAIHWVYIRENETVMADEILSHRLGLIPIIVDAKDFERVVKTPELDPFTELTDKNSIQME 131
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
L + + T + T ++S D +++ T +A + + +++I +L G+++ R
Sbjct: 132 L---VITNNTDKILT--VRSNDIKILSKT----NAAIKQ-----NVIITRLVPGKKIECR 177
Query: 119 AYAKKGFGKEHAKWNPTAGVCF--------EYDPDNSMRHTLFPKPDEWPKSEYSELDET 170
+A G G+EH+KW PT+ VC+ DP + + + ++ + +DE
Sbjct: 178 LFAIIGTGREHSKWMPTS-VCYYRTIKKLEMKDPSKAAEIQKYFRDGFSVRNGQAIVDED 236
Query: 171 QHEAPYNWEAK-PNK---------YFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+ + E K PN+ + F +E A PE I+ G+ ++K KL L+
Sbjct: 237 KLLVNMDIEKKYPNEIKIHTESDSFLFEIEGITA-SPETILKKGIRIIKDKLKELK 291
>gi|213403846|ref|XP_002172695.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Schizosaccharomyces japonicus yFS275]
gi|212000742|gb|EEB06402.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Schizosaccharomyces japonicus yFS275]
Length = 349
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 112/254 (44%), Gaps = 46/254 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILY----SRDCTCVDFCSECSVE 56
+AI++V + N+++L DE ++ R+GLIPL +D + + + T D+ + V
Sbjct: 84 LAIEFVYIINNTSILQDEVLSHRLGLIPLKADPDMFKWFVRPGPGMEATHTDYDT---VV 140
Query: 57 FTLDVKC----------VDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILI 106
F+L+VKC D + ++ + L R AD +I++
Sbjct: 141 FSLNVKCDFNKEAAPGETDPKKLYLNSEVLSGELVWKPQGRQAERFADNPLTVVNPNIVV 200
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----------DNSMRHTLFPK 155
KLR GQE+ L A+A G G++HAK++P + + P D FP
Sbjct: 201 AKLRPGQEIDLEAHAILGIGQDHAKFSPVSTASYRLLPAIHILEPIEGEDAIKFQKCFPA 260
Query: 156 --------PDEWPKSEYSEL--DETQHEAPYNWE-------AKPNKYF-FNVESAGALKP 197
P+ P++ +++ D E + E + YF +++ES G +KP
Sbjct: 261 GVIELEDGPNGKPRARVADVRKDTVSRECLRHPEFADKVQLGRVRDYFLYSIESTGIIKP 320
Query: 198 ENIVIMGVTVLKQK 211
+ + + + VLK K
Sbjct: 321 DQLFLKSIAVLKSK 334
>gi|365982085|ref|XP_003667876.1| hypothetical protein NDAI_0A04770 [Naumovozyma dairenensis CBS 421]
gi|343766642|emb|CCD22633.1| hypothetical protein NDAI_0A04770 [Naumovozyma dairenensis CBS 421]
Length = 335
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 112/257 (43%), Gaps = 46/257 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A ++V N++V+ DE +A RIG+IPL D + + + F + +V +L+
Sbjct: 78 VAAEYVYFLTNTSVIQDEVLAHRIGMIPLKVDPDMLSWIDTSLSEEEKFTDDNTVVMSLN 137
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGET-------------DDIL 105
+KC TR++ A TD +++ S +D G+ DIL
Sbjct: 138 IKC----TRNLN-APKDCTDPKILYHNSSVYAKDLKFEPQGKQVETFAKCPVVPSDPDIL 192
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD-NSMRHTLFPKPDEWPK--- 161
+ KLR QE+ LR + G G +HAK++P + + P N ++ + ++ K
Sbjct: 193 LAKLRPDQEISLRVHCILGVGGDHAKFSPVSTASYRLLPHINILKPITGEQAIKFQKCFL 252
Query: 162 SEYSELDETQHEA------------------PYNWEAKPNK----YFFNVESAGALKPEN 199
++E EA +N + K + + FNVES GA+ PE
Sbjct: 253 PGVIGINEETGEAYVKDARKDTVSREVLRHEEFNDKVKLGRIRDHFIFNVESTGAMTPEE 312
Query: 200 IVIMGVTVLKQKLSNLQ 216
I V +LK K S L+
Sbjct: 313 IFFKSVRILKNKASYLK 329
>gi|350297001|gb|EGZ77978.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora tetrasperma FGSC 2509]
Length = 378
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 23/161 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL--YSRDCTCVDFCSECSVEF 57
+AI+ + + N++V+ DE + R+GLIP T E + L Y + T D+ + VE
Sbjct: 101 LAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEGLHNFLKWYKKGETPCDYNT---VEL 157
Query: 58 TLDVKCVDDQTRHVTTADLK---------STDARVVPVTSRNRDADM----NEYGETD-D 103
L VKC ++++ + D K + D + VP + R A N T+ D
Sbjct: 158 ELKVKCENNESAPADSKDPKELYHNAHVYAKDIKFVP---KGRQAKYFSGENAIRPTNPD 214
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
IL+ K+R GQE+ L + KG G +HAK++P A + P
Sbjct: 215 ILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVATASYRLMP 255
>gi|73667627|ref|YP_303642.1| DNA-directed RNA polymerase subunit D [Methanosarcina barkeri str.
Fusaro]
gi|72394789|gb|AAZ69062.1| DNA-directed RNA polymerase, subunit D [Methanosarcina barkeri str.
Fusaro]
Length = 266
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 118/279 (42%), Gaps = 59/279 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV--DFCSECSVEFT 58
+AI++V L N++VL DE +A R+ LIPL +D V+ + +C + C C V T
Sbjct: 41 LAIEYVNLYENTSVLYDEQLALRLSLIPLVTD--VETYVPQAECDVCGGEGCPACEVSLT 98
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
L + V + DL S+D ++ P AD N I IV+L+KGQ+L L
Sbjct: 99 LSA----EGPCTVYSRDLISSDPKIQP-------ADPN-------IPIVELKKGQKLVLE 140
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNW 178
A A G+G++ KW AGV Y P D H A
Sbjct: 141 ALAHMGYGRDSVKWQ--AGVACGY--------------KNVPVITIENCDACGHCA---- 180
Query: 179 EAKPNKYFFNVESAGA-LKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNWEA 237
A+ K E +GA + E+ VLK L L Q+ I+ ++
Sbjct: 181 -AECPKGIIRFEESGAKVSSED-------VLKCSLCKLCEQVCD------IHAIKIGFD- 225
Query: 238 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
N + F +ES G+ +++ + V+K K L + L
Sbjct: 226 -ENAFVFTMESDGSYTAKDLALNASNVIKGKAEELLSIL 263
>gi|85119573|ref|XP_965664.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora crassa OR74A]
gi|28927476|gb|EAA36428.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora crassa OR74A]
Length = 378
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 80/161 (49%), Gaps = 23/161 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL--YSRDCTCVDFCSECSVEF 57
+AI+ + + N++V+ DE + R+GLIP T E + L Y + T D+ + VE
Sbjct: 101 LAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEGLHNFLKWYKKGETPCDYNT---VEL 157
Query: 58 TLDVKCVDDQTRHVTTADLK---------STDARVVPVTSRNRDADM----NEYGETD-D 103
L VKC ++++ + D K + D + VP + R A N T+ D
Sbjct: 158 ELKVKCENNESAPADSKDPKELYHNAHVYAKDIKFVP---KGRQAKYFSGENAIRPTNPD 214
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
IL+ K+R GQE+ L + KG G +HAK++P A + P
Sbjct: 215 ILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVATASYRLMP 255
>gi|340501661|gb|EGR28416.1| polymerase i polypeptide 30kda, putative [Ichthyophthirius
multifiliis]
Length = 330
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 20/160 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI V + N++++ DE +A R+GL+P+ +D L+ ++ S++F++
Sbjct: 72 MAIHKVYIYQNTSIIPDEVLAHRLGLLPIQADPR----LFEEKEDDAEYNENNSIKFSIK 127
Query: 61 VKCVDDQT---------------RHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDI 104
VKC QT +++ A + S + P+ ++ N D+I
Sbjct: 128 VKCQKKQTYNNHSQKDLENLDPEKYLENAIVYSGQFKWEPIGNQKERFKENIIKIVHDNI 187
Query: 105 LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
++ KLR+ QE+ +KG GK HAKW+P + P
Sbjct: 188 IVAKLRENQEIIAEVICQKGMGKNHAKWSPVCTAYYRLMP 227
>gi|289580107|ref|YP_003478573.1| RNA polymerase insert [Natrialba magadii ATCC 43099]
gi|448281346|ref|ZP_21472652.1| DNA-directed RNA polymerase subunit D [Natrialba magadii ATCC
43099]
gi|289529660|gb|ADD04011.1| RNA polymerase insert [Natrialba magadii ATCC 43099]
gi|445578768|gb|ELY33168.1| DNA-directed RNA polymerase subunit D [Natrialba magadii ATCC
43099]
Length = 249
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ V +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLTTPPV------------GEFVEDDTVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V P AD N + I+ L+ GQ L A
Sbjct: 91 VEG----PATAYSGDLVSSDDLVQP-------ADEN-------VPIIDLKDGQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCFEY--------------DPDNSMRHTLFPKPDEW-PKSEYS 165
A GK+HAK V + + DPD + + + E P SE+
Sbjct: 133 AVLDRGKDHAKHQGGVAVGYRHLQRVAAVEDLPEFEDPDRRIVRGVIEEDGELVPTSEFD 192
Query: 166 -ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+L E PN + F+VE+ G+ E +V ++ + + L+
Sbjct: 193 HDLSNRYPGKEVTLEDVPNSFVFHVETDGSFSVEELVTRAADTIESRATELE 244
>gi|448425439|ref|ZP_21582769.1| DNA-directed RNA polymerase subunit D [Halorubrum terrestre JCM
10247]
gi|448453316|ref|ZP_21593759.1| DNA-directed RNA polymerase subunit D [Halorubrum litoreum JCM
13561]
gi|448485426|ref|ZP_21606651.1| DNA-directed RNA polymerase subunit D [Halorubrum arcis JCM 13916]
gi|448504669|ref|ZP_21614010.1| DNA-directed RNA polymerase subunit D [Halorubrum distributum JCM
9100]
gi|448519096|ref|ZP_21617872.1| DNA-directed RNA polymerase subunit D [Halorubrum distributum JCM
10118]
gi|445680510|gb|ELZ32953.1| DNA-directed RNA polymerase subunit D [Halorubrum terrestre JCM
10247]
gi|445701879|gb|ELZ53851.1| DNA-directed RNA polymerase subunit D [Halorubrum distributum JCM
9100]
gi|445704112|gb|ELZ56030.1| DNA-directed RNA polymerase subunit D [Halorubrum distributum JCM
10118]
gi|445807636|gb|EMA57719.1| DNA-directed RNA polymerase subunit D [Halorubrum litoreum JCM
13561]
gi|445818080|gb|EMA67947.1| DNA-directed RNA polymerase subunit D [Halorubrum arcis JCM 13916]
Length = 250
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 58/242 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V+ NS+V+ DE I R+GL+PLT+ DF V LD
Sbjct: 44 FSIDTVRFVENSSVMFDEMIGLRLGLVPLTT-------------PLDDFELGDEVTLALD 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + D++S+D +V V N + I++L++GQ L A
Sbjct: 91 VEG----PATAYSGDIESSDP-LVEVADEN-------------VPIIELKEGQRLEFEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPD--NSMRHTLFPKPDEWPKSEYS 165
A GKEHAK V + E+D D N +R + E P E
Sbjct: 133 AVLDTGKEHAKHQGGVSVGYRHLQRVSVEGDRGEFDDDEPNILRGVI-----ETPDGEIE 187
Query: 166 ELDETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
DE ++ + K P + F++E+ G+ E +++ + ++++ LQT+
Sbjct: 188 LTDEFDNDLSERFPGKEVAVEDVPGAFVFHIETDGSFDVEELLLRAIDSIEERADELQTK 247
Query: 219 LA 220
+A
Sbjct: 248 VA 249
>gi|443897408|dbj|GAC74749.1| RNA polymerase I and III, subunit RPA40/RPC40 [Pseudozyma
antarctica T-34]
Length = 404
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/262 (25%), Positives = 108/262 (41%), Gaps = 48/262 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++++ DE ++ R+GL+PL D++L + D + +V F L
Sbjct: 137 VAIEHVYIWNNTSIIQDEVLSHRLGLVPLAIHP--DKVLMRQPGDDADDSN--TVVFHLK 192
Query: 61 VKCVDDQ--TRHVTTADLKSTDARVV-------PVTSRNRD-ADMNEYGETDDILIVKLR 110
KC ++ R T D V P + D AD D ILI KLR
Sbjct: 193 AKCERNRNAARGETDPDKLYIGHNVYSGALEWDPKGGQEDDFADAPPRPVHDRILIAKLR 252
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE--------WPKS 162
GQEL L + +KG GK+HAK++P A + P + L P P +P
Sbjct: 253 PGQELDLELHCEKGIGKDHAKFSPVATATYRLLPHIQL---LQPVPAALVDKFVACFPPG 309
Query: 163 EYSELDETQHEAPYNWEAKP-----------------------NKYFFNVESAGALKPEN 199
E + +A+ + + F++ES G + PE
Sbjct: 310 VIGVSGEGDERKVFVQDARKDTISREVFRHDEFENTVKLGRVRDHFLFDLESTGVIPPER 369
Query: 200 IVIMGVTVLKQKLSNLQTQLAH 221
++ + L+ K++ L+ L H
Sbjct: 370 LLPEAIRTLRAKIATLRKGLDH 391
>gi|352682847|ref|YP_004893371.1| DNA-directed RNA polymerase subunit D [Thermoproteus tenax Kra 1]
gi|350275646|emb|CCC82293.1| DNA-directed RNA polymerase subunit D [Thermoproteus tenax Kra 1]
Length = 281
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 70/142 (49%), Gaps = 19/142 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
A+D V + N++ + DE +A RIGLIPLT+ + + VD +EC+V TL
Sbjct: 40 FAVDQVIIINNTSSMYDEMLAHRIGLIPLTTPLGEFPKIEECESGLVD-PAECTVRLTLQ 98
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V ++ R V DL S V PV ++ IVKL KGQ + + AY
Sbjct: 99 VTA--EEARTVYAGDLISEHPGVKPVYP--------------EMPIVKLAKGQSISIEAY 142
Query: 121 AKKGFGKEHAKWNPTAGVCFEY 142
A+ G +EHAKW AG+ Y
Sbjct: 143 ARLGRAREHAKWQ--AGLATYY 162
>gi|328851366|gb|EGG00521.1| hypothetical protein MELLADRAFT_111755 [Melampsora larici-populina
98AG31]
Length = 359
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 108/266 (40%), Gaps = 60/266 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++++ DE +A R+GLIPL D + T ++ ++ F L
Sbjct: 99 IAIEDVFVWNNTSLVHDEVLAQRLGLIPLKVDPRKLDMRGPEGATDMN-----TLVFKLV 153
Query: 61 VKCVDDQTRHVTTAD--LKSTDARVVPVTSRNRD-----------ADMNEYGETDDILIV 107
+C + T D + TD+ V TS D DDIL+V
Sbjct: 154 ARCSRNPNVSKTEKDPSILYTDSDV---TSGYLDWQPKGDQPALFGSQPPKAVQDDILLV 210
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSE---- 163
K+R GQE+ + + KG GK+HAK++P A + P H + +P P E
Sbjct: 211 KMRPGQEISIEMHCVKGIGKDHAKFSPVATASYRLLP-----HIIIHEPILEPHCEKFTS 265
Query: 164 -----YSELDETQHEAPYNWEAKPNK-------------------------YFFNVESAG 193
E+ + QH P K + FNVES+G
Sbjct: 266 CFAQGVIEIVKNQHGQKECKVLNPRKDTVSREVLRHPEFEGKVSLGRVRDHFIFNVESSG 325
Query: 194 ALKPENIVIMGVTVLKQKLSNLQTQL 219
+PE + I VL QK+ +++ L
Sbjct: 326 VYRPEELPIEACLVLLQKIRSVRVAL 351
>gi|409077914|gb|EKM78278.1| hypothetical protein AGABI1DRAFT_121405 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 357
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 111/252 (44%), Gaps = 43/252 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ I+ V + N++V++DE ++ R+GL+PL D + + + D ++ F LD
Sbjct: 84 ICIELVYIWNNTSVIADEVLSHRLGLVPLNVDPALMQFKANLDSAT----DHNTIVFELD 139
Query: 61 VKCVDD--QTRHVTTADLKSTDARVVPVTSRNRDAD--------MNEYGETD-DILIVKL 109
+ C + + D + V+ R + A + G T+ +I++ KL
Sbjct: 140 ITCTRNPGAPKASENPDELYINHEVLSGHLRWKPAGDQLTVFEGLPAPGPTNPNIVLAKL 199
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS---- 165
R GQ +R+ +A KG GK+HAK++P A + P ++ ++ P E + +S
Sbjct: 200 RPGQSVRMELHAIKGVGKDHAKFSPVATASYRLLPHIKIKKSIPPSLSEKFQKCFSPGVV 259
Query: 166 ----------------ELDETQHEAPYNWE-------AKPNKYF-FNVESAGALKPENIV 201
D E + E ++ YF FNVES GA PE ++
Sbjct: 260 KIDSRTGSASVDENNVRKDSVSREVLRHPEFVDSVELSRVRDYFLFNVESEGAYTPERLL 319
Query: 202 IMGVTVLKQKLS 213
+ V+++K+S
Sbjct: 320 PEALKVMREKIS 331
>gi|20094910|ref|NP_614757.1| DNA-directed RNA polymerase alpha subunit [Methanopyrus kandleri
AV19]
gi|23822100|sp|Q8TVB8.1|RPOD_METKA RecName: Full=DNA-directed RNA polymerase subunit D
gi|19888146|gb|AAM02687.1| DNA-directed RNA polymerase alpha subunit [Methanopyrus kandleri
AV19]
Length = 275
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 99/243 (40%), Gaps = 43/243 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD-FCSECSVEFTL 59
+ I+ V + N T + DE +A R+GLIPL D++ D+ C C C +C V L
Sbjct: 45 LRIEEVIIYENDTPMYDEMLAHRLGLIPLRVDDI-DQFELPDLCDCGGKGCEKCQVRAEL 103
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+V + V DLK V P D LI ++ + Q +RL
Sbjct: 104 EV----EGPTKVYARDLKFDHPDVEPAFP--------------DTLITEVGEDQRIRLEV 145
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSM-------RHTLFPKP---------------- 156
A G G EHAKW P + V ++ P+ + + + P
Sbjct: 146 IAVPGLGLEHAKWKPVSAVGYKGLPELEIDEDKLKEKKITYECPQGIIRIENGEVVHIDE 205
Query: 157 DEWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
D P+ + E + + + + + FNVE+ G++ + ++ + ++ KL +L+
Sbjct: 206 DRLPECRMYKEYERETDGAVRVRLRDDAFVFNVETDGSMSLDTAILKALDAIEHKLESLK 265
Query: 217 TQL 219
L
Sbjct: 266 KNL 268
>gi|307103493|gb|EFN51752.1| hypothetical protein CHLNCDRAFT_27642 [Chlorella variabilis]
Length = 381
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE ++ R+GLIPL D + + D + ++ L
Sbjct: 117 MAIEHVYIVNNTSVIQDEVLSHRLGLIPLKVDPRLFQYKAKEDAPS----EQNTIVLKLK 172
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-------------DDILIV 107
V+C + + S D + +P S D + + DDILI
Sbjct: 173 VECRRLPNSGMENDKVYSRDLQWLPEGSEMPDETSCRFASSQAALVPEDVRPVHDDILIA 232
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
KLR GQ + L + KG G +HAKW+P A + P+
Sbjct: 233 KLRPGQAIELECHCIKGVGDDHAKWSPVATTWYRLMPE 270
>gi|345566662|gb|EGX49604.1| hypothetical protein AOL_s00078g93 [Arthrobotrys oligospora ATCC
24927]
Length = 353
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 113/264 (42%), Gaps = 45/264 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECS----VE 56
+AI+ V + N++++ DE +A R+GL+PL D+ + L R + + +E + V
Sbjct: 87 LAIETVFVHNNTSIVQDEVLAQRLGLVPLRGDKKGFQQLRWRKKSPDEPAAEATDFNTVV 146
Query: 57 FTLDVKCVDDQTRHVTTADLK------STDARVVPVTSRNRDAD-MNEYGE----TDDIL 105
TL V C + T D S AR + + R + + GE DIL
Sbjct: 147 MTLKVACTRNHATPNTETDPSKLYFNSSVYARDIKFAPQGRQSSWFSGAGEIRPVNPDIL 206
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-----------FP 154
+ KLR GQE+ L + G G++HAK++P A + P ++ + FP
Sbjct: 207 LAKLRPGQEIDLEIHCVLGIGQDHAKFSPVATASYRLLPSIKIKKPITGEDAEKFVNCFP 266
Query: 155 KP-DEWPKSEYS----------ELDETQHEAPYNWEAKP--------NKYFFNVESAGAL 195
K E K + + D E + E K + + F++ES G
Sbjct: 267 KGVAEVQKDKKTGENTAVVVNPRKDTVSREVLRHDEFKGKVELGRIRDHFIFSIESTGMY 326
Query: 196 KPENIVIMGVTVLKQKLSNLQTQL 219
+ + + V +LK+K ++ Q +L
Sbjct: 327 NSDELFLQAVQILKKKCTDFQEKL 350
>gi|146322984|ref|XP_755705.2| DNA-directed RNA polymerase I and III subunit Rpc40 [Aspergillus
fumigatus Af293]
gi|129558558|gb|EAL93667.2| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus fumigatus Af293]
Length = 374
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 18/163 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSECS----- 54
+AI++V + N++V+ DE +ASR+GLIPL S E ++ + + + T D S +
Sbjct: 90 LAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSVEGLNWMRWFKKPTEDDPESGSTPADYN 149
Query: 55 -VEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGETD 102
+ LDV+C DD + A + + D PV + + D
Sbjct: 150 TIVLRLDVECTENPNAAPGEDDPRKLYKNAHVYAKDITFHPVGRQEQFFTGDGAIQPVNP 209
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DILI KLR GQ++ + + KG G +HAK++P A + PD
Sbjct: 210 DILIAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMPD 252
>gi|410670316|ref|YP_006922687.1| DNA-directed RNA polymerase subunit D [Methanolobus psychrophilus
R15]
gi|409169444|gb|AFV23319.1| DNA-directed RNA polymerase subunit D [Methanolobus psychrophilus
R15]
Length = 265
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 23/143 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTL 59
+AI +V + N++VL DE + R+ LIPL ++ ++ + +C C C C V TL
Sbjct: 41 LAITYVNIYNNTSVLFDEQLGLRLALIPLAAN--IEEFVPVEECICGGSECPACRVSLTL 98
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+ R V + D S+D V P + +I I++L++GQ++ L A
Sbjct: 99 SA----EGPRMVYSGDFVSSDETVQPAEA--------------NIPIIELKEGQKVVLEA 140
Query: 120 YAKKGFGKEHAKWNPTAGVCFEY 142
A G+G +HA+W AGV Y
Sbjct: 141 IAHMGYGNQHARWQ--AGVACGY 161
>gi|119481605|ref|XP_001260831.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Neosartorya fischeri NRRL 181]
gi|119408985|gb|EAW18934.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Neosartorya fischeri NRRL 181]
Length = 374
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 18/163 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSECS----- 54
+AI++V + N++V+ DE +ASR+GLIPL S E ++ + + + T D S +
Sbjct: 90 LAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSVEGLNWMRWFKKPTEDDPESGSTPADYN 149
Query: 55 -VEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGETD 102
+ LDV+C DD + A + + D PV + + D
Sbjct: 150 TIVLRLDVECTENPNAAPGEDDPRKLYKNAHVYAKDITFHPVGRQEQFFTGDGAIQPVNP 209
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DILI KLR GQ++ + + KG G +HAK++P A + PD
Sbjct: 210 DILIAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMPD 252
>gi|121716353|ref|XP_001275782.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus clavatus NRRL 1]
gi|119403939|gb|EAW14356.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus clavatus NRRL 1]
Length = 374
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 18/163 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSEC------ 53
+AI++V + N++V+ DE +ASR+GLIPL S E ++ + + + T D S
Sbjct: 90 LAIEYVFVHNNTSVIQDEVLASRLGLIPLKGSVEGLNWMRWFKKPTEEDPDSGSNPADYN 149
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGETD 102
++ LDV+C DD + A + + D PV + + D
Sbjct: 150 TIVLRLDVECAENPNAAPGEDDPRKLYKNAHVYAKDITYHPVGRQEQFFTGDGAIQPVNP 209
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DIL+ KLR GQ++ + + KG G +HAK++P A + PD
Sbjct: 210 DILVAKLRPGQKIDMELHCIKGIGADHAKFSPVATASYRLMPD 252
>gi|336464897|gb|EGO53137.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Neurospora tetrasperma FGSC 2508]
Length = 378
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 23/161 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL--YSRDCTCVDFCSECSVEF 57
+AI+ + + N++V+ DE + R+GLIP T E + L Y + T D+ + VE
Sbjct: 101 LAIEDIFMWNNTSVIQDEVLGHRLGLIPFTGGKEGLHNFLKWYKKGETPCDYNT---VEL 157
Query: 58 TLDVKCVDDQTRHVTTADLK---------STDARVVPVTSRNRDADM----NEYGETD-D 103
L VKC +++ + D K + D + VP + R A N T+ D
Sbjct: 158 ELKVKCENNENAPADSKDPKELYHNAHVYAKDIKFVP---KGRQAKYFSGENAIRPTNPD 214
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
IL+ K+R GQE+ L + KG G +HAK++P A + P
Sbjct: 215 ILVAKMRPGQEIDLTMHMHKGVGSDHAKFSPVATASYRLMP 255
>gi|448322475|ref|ZP_21511945.1| DNA-directed RNA polymerase subunit D [Natronococcus amylolyticus
DSM 10524]
gi|445601233|gb|ELY55222.1| DNA-directed RNA polymerase subunit D [Natronococcus amylolyticus
DSM 10524]
Length = 249
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLTT------------PPEGEFVEDDTVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D+ V AD N + I++L++GQ L A
Sbjct: 91 VEG----PATAYSGDLVSSDSLV-------EAADEN-------VPIIELKEGQRLEAEAE 132
Query: 121 AKKGFGKEHAKWNPTAGVCFEY--------------DPDNSMRHTLFPKPDEW-PKSEYS 165
A+ GK HAK V + + +P++ + + + E P SE+
Sbjct: 133 ARLERGKNHAKHQGGVAVGYRHLQRVEVVDDLPEFQEPESQIVRGVVEENGELVPTSEFD 192
Query: 166 ELDETQHEAP-YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
T+H + E PN + F+VE+ G+ E +V V ++ + + L+
Sbjct: 193 HDLSTRHPGKEVHLEDVPNAFVFHVETDGSFSVEELVTRAVDSIEARATELE 244
>gi|219121193|ref|XP_002185825.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582674|gb|ACI65295.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 319
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 112/291 (38%), Gaps = 50/291 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A++ + + NS+++ DE ++ R+GLIPL D R+L +D +V F L
Sbjct: 38 VALENIYMWENSSLIHDEVLSHRLGLIPLKIDA---RLLDEQDDDDPSPTDRNTVVFRLG 94
Query: 61 VKCVDDQTR---------HVTTADLKSTDARVVPVTSRNRDADM-------------NEY 98
V C D + H D D P T D+ +
Sbjct: 95 VSCGSDPNKGKAKHKADSHENANDAAEADQDERPYTKHVYSKDLVWVPQGDQEERLQDIC 154
Query: 99 GETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE 158
DDILI KLR GQ + L + + G GK+HAK++P A + P + ++
Sbjct: 155 AMHDDILIAKLRPGQSIELEVHGRVGVGKDHAKFSPVATASYRLMPHIELLRDVY----- 209
Query: 159 WPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSN-LQT 217
DE E + +E F + A P T K ++ N
Sbjct: 210 ---------DEVADELVHVYEPG----VFEIVPTDATDPAG------TSRKARVCNPYAC 250
Query: 218 QLAHDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 268
++ + + + P+ + F+VES G P +V + +L++K
Sbjct: 251 TMSRNYMRHTELAQAVRMSRIPDHFIFSVESVGMYAPGVLVAEALRILQRK 301
>gi|171696332|ref|XP_001913090.1| hypothetical protein [Podospora anserina S mat+]
gi|170948408|emb|CAP60572.1| unnamed protein product [Podospora anserina S mat+]
Length = 372
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 129/304 (42%), Gaps = 54/304 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS--DEVVDRILYSRDCTCVDFCSEC----S 54
+AI+ V + N++V+ DE +A R+GLIP T + + D + + R D +EC +
Sbjct: 90 LAIENVFVWNNTSVIQDEVLAHRLGLIPFTGGREGLTDFLKWYRKPANGD-PAECKDFNT 148
Query: 55 VEFTLDVKCVDDQTRHVTTADLKSTD-----------ARVVPVTSRNRDADMNEYGE--- 100
V L+VKC H AD TD A+ + R D GE
Sbjct: 149 VALELNVKC-----EHNENADPNETDPTKLYHHAHVYAKDIVFKPIGRQVDYFS-GEDII 202
Query: 101 ---TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD 157
DILI KLR GQE+ ++ + KG G +HAK++P A + P ++ + +
Sbjct: 203 RPVNPDILIAKLRPGQEINVQMHMHKGVGSDHAKFSPVATASYRIMPTITITQPILGRDA 262
Query: 158 E-----WPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKL 212
E +PK T EA A+ + E G LK + TV ++ L
Sbjct: 263 EKFQRCFPKGVIGLEKVTAEEA-----AQKGSGYEGHE--GELKAVVVDPKSDTVSREAL 315
Query: 213 SNLQTQLAHDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 272
+ + + D+V + + + + VES G K + I + V+ LK K L
Sbjct: 316 RHEEFK---DKV---------KLGRRRDHFIYLVESTGQWKSDAIFLESVSHLKAKAKAL 363
Query: 273 QTQL 276
+ QL
Sbjct: 364 EKQL 367
>gi|212276110|ref|NP_001130839.1| uncharacterized protein LOC100191943 [Zea mays]
gi|194690246|gb|ACF79207.1| unknown [Zea mays]
gi|413926820|gb|AFW66752.1| hypothetical protein ZEAMMB73_992882 [Zea mays]
Length = 372
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 115/272 (42%), Gaps = 61/272 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V++DE ++ R+GLIPL +D + + D ++ + L
Sbjct: 110 MAIEKVFMADNNSVIADEVLSHRLGLIPLDADPRLFEYISENDVPN----ERNTIVYKLH 165
Query: 61 VKCVDDQTR-HVTTADLK-----STDARVVPVTSRNRDADMNEYGETD------------ 102
V C + R V +++L+ S + P S ++ + ++
Sbjct: 166 VSCPKNSQRITVKSSELEWLPEGSQLSMSAPAQSGDKQKTFTSFSQSQKEILEKPLGVKY 225
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK 161
DI I +L GQ + L A+A KG G HAKW+P A + P+ + K E P+
Sbjct: 226 KDITIARLGPGQAIELEAHAVKGTGNVHAKWSPVATAWYRMLPE-----VVILKEVEGPQ 280
Query: 162 SE---------YSELDETQHEAPYNWEAKP------------------------NKYFFN 188
+E ++++ + A+P + + F
Sbjct: 281 AEELVNKCRVNVFDIEDLANGGKRAVVARPRACTLCRECVMGPNEKQVELRRVRDHFIFT 340
Query: 189 VESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+ES G++ PE + V +L++K + + ++L+
Sbjct: 341 IESTGSMPPEVLFTEAVKILEEKCARVISELS 372
>gi|303277947|ref|XP_003058267.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460924|gb|EEH58218.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 410
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 82/187 (43%), Gaps = 47/187 (25%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE A R+GLIP+ +D + + D + ++ F +
Sbjct: 117 MAIEKVFMVNNTSVIQDEVFAHRLGLIPIRADPRLFDLRGEGDTPT----EKNTIVFKMC 172
Query: 61 VKCVDDQTRHVTTADLKS----TDARV-VPVTS---------------------RNRDAD 94
VKC ++T T L + TD+ V +P S + R+ +
Sbjct: 173 VKCTREKTTDGTKGALINDKVYTDSLVWLPNGSELPPDEETKFTQFSCDQGEYLKKRNKE 232
Query: 95 MNEYGET-----------------DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 137
E GE DDIL+VK+ GQE+ L A+ KG GKEHAKW+P
Sbjct: 233 SKELGEKEYFNRNGKDPNVISTVHDDILLVKMVAGQEIELEAHCTKGDGKEHAKWSPVGT 292
Query: 138 VCFEYDP 144
+ P
Sbjct: 293 TWYRMVP 299
>gi|432957842|ref|XP_004085906.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like, partial [Oryzias latipes]
Length = 264
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 19/163 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF----CSEC-SV 55
MAI+ V + N++++ DE +A R+GL+P+ +D L+ +F SE ++
Sbjct: 40 MAIEKVFIYNNTSIVQDEVLAHRLGLVPIKADPR----LFEYKNIAEEFGEQEASEIDTI 95
Query: 56 EFTLDVKCVDDQTRHVTTADLK---------STDARVVPVTSR-NRDADMNEYGETDDIL 105
+ L +KC + ++D + S D VP+ ++ + AD DDI+
Sbjct: 96 QLQLKIKCSRNPRASKESSDPRELYLNHIVYSKDINWVPLGNQADVFADSRIGAVHDDIV 155
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSM 148
I +LR GQEL + + KG GK+HAK++P A + PD ++
Sbjct: 156 IAQLRPGQELDVVMHCVKGIGKDHAKFSPVATASYRLLPDITL 198
>gi|401825113|ref|XP_003886652.1| DNA-directed RNA polymerase I [Encephalitozoon hellem ATCC 50504]
gi|395459797|gb|AFM97671.1| DNA-directed RNA polymerase I [Encephalitozoon hellem ATCC 50504]
Length = 305
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 21/148 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD----EVVDRILYSRDCTCVDFCSECSVE 56
MA+ V L+ N +V DEFIA R+GLIPL +D E ++ L R+ S+
Sbjct: 68 MAVRDVLLKENESVFPDEFIAHRLGLIPLEADPEMFEFAEKELNERN----------SLR 117
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
F LDVK ++++ V ++ S D + +P S+ + + + +L+ KL +GQ +
Sbjct: 118 FVLDVK---NESKDVL--NVYSDDIKWIPFGSQR--GTLKDVKFSSKVLMFKLARGQRIS 170
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
K GK HAKW+P + P
Sbjct: 171 AELVCTKNIGKVHAKWSPVCPATYRLMP 198
>gi|395324899|gb|EJF57331.1| insert subdomain of RNA polymerase alpha subunit [Dichomitus
squalens LYAD-421 SS1]
Length = 370
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 20/154 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++V+ DE +A RIGLIPL D R+ R + V F L+
Sbjct: 93 IAIEDVFVFNNTSVIHDEILAQRIGLIPLNVD---PRLFDFRPPGGIPMDRNTLV-FKLN 148
Query: 61 VKCVDDQ--------TRHVTTADL--KSTDARVVPVTSRNRDADMNEYGETDDILIVKLR 110
V C + +V + DL + + SR A DI++ KLR
Sbjct: 149 VTCERAKKGSSSPYINEYVKSGDLVWEPQGEQATVFASRPPAAT------NPDIVLAKLR 202
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
GQ + + +A KG GKEHAKW+P A + P
Sbjct: 203 PGQVIEMELHAIKGVGKEHAKWSPVATATYRLHP 236
>gi|448352729|ref|ZP_21541510.1| DNA-directed RNA polymerase subunit D [Natrialba hulunbeirensis JCM
10989]
gi|448358769|ref|ZP_21547445.1| DNA-directed RNA polymerase subunit D [Natrialba chahannaoensis JCM
10990]
gi|445642008|gb|ELY95079.1| DNA-directed RNA polymerase subunit D [Natrialba hulunbeirensis JCM
10989]
gi|445644783|gb|ELY97792.1| DNA-directed RNA polymerase subunit D [Natrialba chahannaoensis JCM
10990]
Length = 249
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ V +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLTTPPV------------GEFVEDDTVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V P AD N + I+ L+ GQ L A
Sbjct: 91 VEG----PATAYSGDLVSSDDLVQP-------ADEN-------VPIIDLKDGQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCFEY--------------DPDNSMRHTLFPKPDEW-PKSEYS 165
A GK+HAK V + + +PD + + + E P SE+
Sbjct: 133 AVLDRGKDHAKHQGGVAVGYRHLQRVAAVEDLPEFEEPDRRIVRGVIEEDGELVPTSEFD 192
Query: 166 -ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+L E PN + F+VE+ G+ E +V ++ + + L+
Sbjct: 193 HDLSNRYPGQEVTLEDVPNSFVFHVETDGSFSVEELVTRAADTIESRATELE 244
>gi|449662625|ref|XP_002166070.2| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Hydra magnipapillata]
Length = 354
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 22/160 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD---------EVVDRI-LYSRDCTCVDFC 50
MAI+ V + N+T++ DE +A R+GLIP+ +D ++ D L + VD
Sbjct: 85 MAIEKVFIFNNTTIVQDEILAHRLGLIPILADPREFNFPPAKLEDESKLTDEERLAVD-- 142
Query: 51 SECSVEFTLDVKCVDD--QTRHVTTADLKSTDARV-------VPVTSRNRDADMNEYGET 101
+ F L +KC + + T D+ + +V +P+ + N
Sbjct: 143 EHHHLVFELKIKCSKNPKASSDATDPDVLYLNNKVMTKHMKWIPIGRQAEKFSTNIVRPV 202
Query: 102 -DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCF 140
DDILI KLR GQEL +R + KG GK+HAK++P A +
Sbjct: 203 FDDILIAKLRPGQELDIRMHCVKGIGKDHAKFSPVATASY 242
>gi|448431138|ref|ZP_21584966.1| DNA-directed RNA polymerase subunit D [Halorubrum tebenquichense
DSM 14210]
gi|445688285|gb|ELZ40550.1| DNA-directed RNA polymerase subunit D [Halorubrum tebenquichense
DSM 14210]
Length = 250
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 102/246 (41%), Gaps = 66/246 (26%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD----EVVDRILYSRDCTCVDFCSECSVE 56
+ID V+ NS+V+ DE I R+GLIPLT+ EV D + + D +
Sbjct: 44 FSIDTVRFVENSSVMFDEMIGLRLGLIPLTTPLDDFEVGDEVTLALDVEG------PATA 97
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
++ D++C D V AD D++ I++L++GQ L
Sbjct: 98 YSGDIECSD---PLVEVAD--------------------------DNVPIIELKEGQRLE 128
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCF-------------EYDPD--NSMRHTLFPKPDEWPK 161
A A GKEHAK V + E+D D N +R + E P
Sbjct: 129 FEADAVLDTGKEHAKHQGGVSVGYRHLQRVTVEGDRGEFDDDEPNILRGVI-----ETPD 183
Query: 162 SEYSELDETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSN 214
E D+ ++ + K P + F++E+ G+ E +++ + ++++
Sbjct: 184 GEIELTDDFDNDLSERFPGKEVAVEDVPGAFVFHIETDGSFDVEELLLRAIDTIEERADE 243
Query: 215 LQTQLA 220
LQT++A
Sbjct: 244 LQTKVA 249
>gi|147901420|ref|NP_001085237.1| polymerase (RNA) I polypeptide C, 30kDa [Xenopus laevis]
gi|47937458|gb|AAH72033.1| MGC78824 protein [Xenopus laevis]
Length = 347
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 115/263 (43%), Gaps = 52/263 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A++ V + N++++ DE +A R+GLIP+ +D R+ R + +++F L+
Sbjct: 87 VAVEKVYVYNNTSIIQDEILAHRLGLIPIRADP---RLFEYRSADDAEGTEIDTLQFELN 143
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNRDADMNEYGETD-------DI 104
VKC + +D + + + +P ++ ++ + ETD DI
Sbjct: 144 VKCTRNPRASKDCSDPNELYLNHKVYTGHMKWLPQGNQ-----VDLFPETDPPRPVHKDI 198
Query: 105 LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL------------ 152
LI +LR GQE+ + + KG GK+HAK++P A + P+ ++ ++
Sbjct: 199 LIAQLRPGQEINVIMHCVKGIGKDHAKFSPVATASYRLLPEVTLLSSIEGELADKLQGCF 258
Query: 153 ---FPKPDE-----WPKSEYSELDETQHEAPYNWEAK--------PNKYFFNVESAGALK 196
DE + E + +D E + + K + Y F+VES G L
Sbjct: 259 SPGVISVDEVNGKRVARVENARMDTCSREIFRHDDLKNLVRMARVRDHYIFSVESTGILP 318
Query: 197 PENIVIMGVTVLKQKLSNLQTQL 219
P+ +V + VL K +L
Sbjct: 319 PDILVSEAIKVLMGKCRRFLDEL 341
>gi|426193914|gb|EKV43846.1| hypothetical protein AGABI2DRAFT_209410 [Agaricus bisporus var.
bisporus H97]
Length = 357
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 110/263 (41%), Gaps = 59/263 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVV-------------DRILYSRDCTCV 47
+ I+ V + N++V++DE ++ R+GL+PL D + + I++ D TC
Sbjct: 84 ICIELVYIWNNTSVIADEVLSHRLGLVPLNVDPALMQFKANLDSATDHNTIVFELDITCT 143
Query: 48 -----DFCSECSVEFTLDVKCVDDQTRHVTTAD-LKSTDARVVPVTSRNRDADMNEYGET 101
SE E ++ + + R D L + P MN
Sbjct: 144 RNPGAPKVSENPDELYINHEVLSGHLRWKPAGDQLTVFEGLPAP-------GPMNP---- 192
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK 161
+I++ KLR GQ +R+ +A KG GK+HAK++P A + P ++ + P E +
Sbjct: 193 -NIVLAKLRPGQSVRMELHAIKGVGKDHAKFSPVATASYRLLPHIKIKKPIPPSLSEKFQ 251
Query: 162 SEYS--------------------ELDETQHEAPYNWE-------AKPNKYF-FNVESAG 193
+S D E + E ++ YF FNVES G
Sbjct: 252 KCFSPGVVKIDSRTGSASVDENNVRKDSVSREVLRHPEFVDSVELSRVRDYFLFNVESEG 311
Query: 194 ALKPENIVIMGVTVLKQKLSNLQ 216
A PE ++ + V+++K+S ++
Sbjct: 312 AYTPERLLPEALKVMREKISIIK 334
>gi|161899303|ref|XP_001712878.1| DNA-directed RNA polymerase II third largest subunit [Bigelowiella
natans]
gi|75756372|gb|ABA27266.1| DNA-directed RNA polymerase II third largest subunit [Bigelowiella
natans]
Length = 291
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 114/276 (41%), Gaps = 42/276 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A D + + N++ +DEFIA RIGLIPL S+ + + + ++ V F ++
Sbjct: 43 LAADTIMIFENTSNFNDEFIAHRIGLIPLISNTLYEACNWEKNPKIV---------FDIN 93
Query: 61 VKCVDDQTRHVTTADLKSTDA--RVVPVTSRNRDA--DMNEYGETD--DILIVKLRKGQE 114
C ++ + V+T D + RV P+ D N++ + ILI+KL++ Q
Sbjct: 94 KFCKNNSSCFVSTKDYRCNTFRNRVTPIGYSYYDKINQENKFNLVNYSHILILKLKQSQV 153
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD-EWPKSEYSELDETQHE 173
L ++ KKG G +H KW G + LFP P W +D+
Sbjct: 154 LSMKITLKKGKGSDHTKWCSNYG------------NILFPIPTIRWNLIMLLMMDKMN-- 199
Query: 174 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPY 233
Y + ++ + + I+ + NLQ H +F +
Sbjct: 200 TSYLCDT-----LLDIVNITNIHHNQILN------SHMIENLQNSSIHS-LFEFLKSTKI 247
Query: 234 NWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKL 269
K FF ES G+L P+ I+I + L ++L
Sbjct: 248 VKFGGLQKTFFKFESNGSLLPKYILIFSMEALVKRL 283
>gi|342319511|gb|EGU11459.1| Hypothetical Protein RTG_02619 [Rhodotorula glutinis ATCC 204091]
Length = 785
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 108/258 (41%), Gaps = 47/258 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A++ V + N++++ DE +A R+GLIPL D + + D D + V F+L
Sbjct: 112 VAVENVYVWNNTSIIQDEVLAQRLGLIPLAIDPRKLDMKKTPDEPPTDLNT---VVFSLI 168
Query: 61 VKCVDDQTRHVTTADLKSTDAR----VVPVTSRN-----RDADMNEYGE------TDDIL 105
+C ++ + V + TD V V S N R +G+ DDIL
Sbjct: 169 ARC--ERRKDVKKGE---TDPHKIWSGVEVLSSNLSFSSRGGQDELFGDRPPKPAIDDIL 223
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE-----WP 160
+ K+R GQE+ + KG GK+HAKW+P A + P + + P+ +P
Sbjct: 224 VAKMRGGQEIVAELHCVKGIGKDHAKWSPVATASYRLLPTIDILADIPPELHSKFEACFP 283
Query: 161 KSEYSE-------------------LDETQHEAPYNWEAKPNKYFFNVESAGALKPENIV 201
+ L + E + + F+VESAG +PE +V
Sbjct: 284 PGVIEQRSGRLVVANARRDTVSREVLRHPEFEDKVKLGRVRDHFIFSVESAGQYRPEELV 343
Query: 202 IMGVTVLKQKLSNLQTQL 219
+ VL K+ T+L
Sbjct: 344 PEAIEVLLAKIRACATRL 361
>gi|307206448|gb|EFN84486.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Harpegnathos
saltator]
Length = 390
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 18/160 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE +A R+GLIPL +D + S + + ++ + L
Sbjct: 92 MAIEKVYVINNTSVVQDEVLAHRLGLIPLRADPRLFEYPPSNGRKDDEVSDQDTLRYELK 151
Query: 61 VKCVDDQTRH---------VTTADLKSTDARVVPVTSRNRDADMNEYGET------DDIL 105
V C + + + + S D + VP+ R A+M G +DIL
Sbjct: 152 VACTKNPQKSQDSQLPEEIYKNSSVYSKDIKWVPI---GRQAEMFPNGAEQLGVLENDIL 208
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
I K+R G E+ + +A KG K+HAK++P + + P+
Sbjct: 209 ISKMRPGHEIHVYMHAFKGISKDHAKYSPLSIATYRLLPN 248
>gi|169774489|ref|XP_001821712.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Aspergillus
oryzae RIB40]
gi|238496959|ref|XP_002379715.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus flavus NRRL3357]
gi|83769575|dbj|BAE59710.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694595|gb|EED50939.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Aspergillus flavus NRRL3357]
Length = 373
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 31/169 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSR--------DCTCVDFCSE 52
+AI++V + N++V+ DE +A R+GLIPL VD I + R D D
Sbjct: 90 VAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGS--VDGINWMRWFKKATEDDPEGSDPSDY 147
Query: 53 CSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGETD-------- 102
++ LD++C + AD D R + + RD + G +
Sbjct: 148 NTIVLRLDIECTKN-----PNADATENDPRKLYKNAHVYARDITFHPVGRQEQFFTGEDA 202
Query: 103 ------DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DILI KLR GQ++ L + KG G +HAK++P A + PD
Sbjct: 203 IQPVNPDILIAKLRPGQKIDLEMHCIKGIGADHAKFSPVATASYRLLPD 251
>gi|296422447|ref|XP_002840772.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636995|emb|CAZ84963.1| unnamed protein product [Tuber melanosporum]
Length = 377
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 106/262 (40%), Gaps = 43/262 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDR----ILYSRDCTCVDFCSECSVE 56
+AI+ V + N++++ DE +A R+GLIPL D+ + L D + E +V
Sbjct: 84 LAIESVYVSNNTSIIQDEVLAHRLGLIPLCGDKDALKGLSWYLRGEDSAPREPTDEDTVV 143
Query: 57 FTLDVKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNRDADMNEYGETD-DILI 106
L C + T D + ++D P + + + + DILI
Sbjct: 144 LYLKKACERNPDAKKTDTDPDKLYINHNVYASDILFEPAGRQIKSFAHDPVRAANPDILI 203
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE-----WPK 161
KLR GQE+ L + KG G++HAK++P A + PD ++ + K E +PK
Sbjct: 204 AKLRPGQEIDLTMHCIKGIGQDHAKFSPVATASYRLLPDIKIKKPIRGKAAERFAACFPK 263
Query: 162 SEYS----------------ELDETQHEAPYNWEAKP--------NKYFFNVESAGALKP 197
+ D E + E K + + F+VES G
Sbjct: 264 GVIAIRERKDGEKEAVVDNVRNDTVSREVLRHDEFKGIVELGRVRDHFIFSVESTGQFDA 323
Query: 198 ENIVIMGVTVLKQKLSNLQTQL 219
+ I + V LK K NL+ +
Sbjct: 324 DEIFLSAVGTLKAKTINLKRDI 345
>gi|118088012|ref|XP_001234462.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
isoform 1 [Gallus gallus]
Length = 300
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 101/250 (40%), Gaps = 67/250 (26%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+
Sbjct: 81 MAVEKVFVYNNTSIVQDEILAHRLGLIPIRADP---RLFEYRNQV--------------- 122
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
++H+T L + T DAD DDILI LR GQE+ + +
Sbjct: 123 ------YSKHMTWVPLGNQ-------TDLFPDADFRPV--HDDILIALLRPGQEIDVLMH 167
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKS------------------ 162
KG GK+HAK++P A + PD ++ L P DE ++
Sbjct: 168 CVKGIGKDHAKFSPVATASYRLLPDITL---LQPVEDEAAETLQKCFSPGVIEIQNIKGK 224
Query: 163 -----EYSELDE-----TQHEAPYN---WEAKPNKYFFNVESAGALKPENIVIMGVTVLK 209
+ LD +HE N N Y F+VES G L P+ +V + +L
Sbjct: 225 KVARVANARLDTFSREVFRHEGLKNLVRLARVRNHYIFSVESTGILPPDVLVTEAIKILM 284
Query: 210 QKLSNLQTQL 219
K +L
Sbjct: 285 GKCQRFLNEL 294
>gi|448414206|ref|ZP_21577345.1| DNA-directed RNA polymerase subunit D [Halosarcina pallida JCM
14848]
gi|445682499|gb|ELZ34916.1| DNA-directed RNA polymerase subunit D [Halosarcina pallida JCM
14848]
Length = 260
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 103/248 (41%), Gaps = 59/248 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
++D V+ NS+V+ DE I R+GL+PLT+D DF V LD
Sbjct: 43 FSVDTVRFVENSSVMFDEMIGLRLGLVPLTTD-------------LGDFEEGDVVTLALD 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + D++++D V P AD N + I++L++GQ L L A
Sbjct: 90 VEG----PATAYSGDIETSDGLVQP-------ADQN-------VPIIELKEGQRLELEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPD--NSMRHTLFPKPDEWPKSEYS 165
A G GKEHAK V + E+D N +R + + E E +
Sbjct: 132 AVLGRGKEHAKHQGGVAVGYRHLHRVEVVGDANEFDEQEPNILRGVIEEQAAEHAADEGA 191
Query: 166 E-LDETQHEAPYNWEAK------------PNKYFFNVESAGALKPENIVIMGVTVLKQKL 212
+ D EA N AK P + F+VE+ G+ E +V V + +
Sbjct: 192 QNGDLVPTEAFDNDLAKRYPGKEVEVHDVPGAFVFHVETDGSFTVEELVRRAVESISDRA 251
Query: 213 SNLQTQLA 220
+ L+ ++A
Sbjct: 252 AELEEKIA 259
>gi|225677934|gb|EEH16218.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides brasiliensis Pb03]
Length = 345
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 111/282 (39%), Gaps = 62/282 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSEC------ 53
+AI+ V + N++V+ DE +A R+GL+PLT S E ++ + + R D S
Sbjct: 55 LAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGINWLRWFRQPNEGDPSSGSELADYN 114
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNR---DADMNEYGET 101
++ L+VKC D + + A + + D PV + + D
Sbjct: 115 TIVLHLNVKCKKNPKASPDEQDPLKLYSHAHVYAKDITFQPVGRQEAYFPEPDGGIRPTN 174
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPK------ 155
DIL+ KLR GQ++ + + KG G +HAK++P A + PD + + K
Sbjct: 175 PDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPDIRILRPILGKDAVKFA 234
Query: 156 ---PDEWPKSEYSELDE-TQHEAPYNWEAKPNK--------------------------- 184
P+ E +E +Q + Y K
Sbjct: 235 GCFPEGVIGIETVTAEEASQRGSGYEGHEGAKKAVVLDPFKDTVSRECLRHEEFQGKVKL 294
Query: 185 ------YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+ FNVES G + + + + V VLK K L+ LA
Sbjct: 295 GRIRDHFIFNVESTGQFRSDVLFLESVKVLKLKCRKLKRDLA 336
>gi|322783207|gb|EFZ10793.1| hypothetical protein SINV_03179 [Solenopsis invicta]
Length = 344
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 16/158 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N+++L DE +A R+GLIPL +D + S + + ++ + L
Sbjct: 76 MAIEKVYIVNNTSLLQDEILAHRLGLIPLRADPRLFEYPPSNARADDEISDQDTLRYELK 135
Query: 61 VKC-VDDQTRHVT--------TADLKSTDARVVPVTSRN----RDADMNEYGETD-DILI 106
V C V+ Q + + + S D + VP+ + R A+ E+G + DIL+
Sbjct: 136 VTCTVNPQAPKNSHNPEDMYKNSKVYSKDIKWVPIGQQGEMFPRGAE--EFGVLENDILL 193
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
K+R G E+ L +A K GK+HAK++P A + P
Sbjct: 194 CKMRPGHEIHLFMHAIKSIGKDHAKFSPVATASYRLLP 231
>gi|422293779|gb|EKU21079.1| DNA-directed RNA polymerase II subunit RPB3, partial
[Nannochloropsis gaditana CCMP526]
Length = 121
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS-----DEVVDRILYSRDCTCVDFCSECSV 55
+AID V E NS+VL+DE++A R+GLIPL S +V D + RDC C CS CSV
Sbjct: 45 LAIDLVSFEVNSSVLNDEYLAHRLGLIPLRSVNPRYKKVADLKDF-RDCDCDSHCSRCSV 103
Query: 56 EFTLDVK 62
E +LDV+
Sbjct: 104 ELSLDVR 110
>gi|108707637|gb|ABF95432.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein,
expressed [Oryza sativa Japonica Group]
Length = 352
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 23/171 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V++DE ++ R+GLIPL +D + + D ++ + L
Sbjct: 110 MAIEKVLMADNTSVIADEVLSHRLGLIPLDADPRLFEYISENDVPT----ERNTIVYKLH 165
Query: 61 VKCVDDQTR-HVTTADLK-----STDARVVPVTSRNRDADMNEYGETD------------ 102
V C R V + DL+ S P S ++ + ++
Sbjct: 166 VSCKKGSPRLTVKSGDLEWLPEGSQLPLASPAQSGDKQKTYTSFSQSQKDILEKPLGVKF 225
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL 152
DI I +L GQ + L +A KG GK HAKW+P A + P+ +R +
Sbjct: 226 KDITIARLGPGQAIELEVHAVKGIGKVHAKWSPVATAWYRMLPEVVLREEI 276
>gi|392593120|gb|EIW82446.1| hypothetical protein CONPUDRAFT_136940 [Coniophora puteana
RWD-64-598 SS2]
Length = 358
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 122/283 (43%), Gaps = 40/283 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++V+ DE +A R+GL+PL D L ++ + ++ F L+
Sbjct: 85 IAIEQVYVWNNTSVIVDEVLAHRLGLVPLNVDP---SFLEFKESPSIQATDRNTLVFKLE 141
Query: 61 VKC---------VDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-DILIVKLR 110
V C V D +++ S+D R VP + N ++ +I++ KLR
Sbjct: 142 VTCTRNRNTPKDVTDPKMLYNNSEVLSSDLRWVPQGEQEEIFAANIPTPSNPNIVLAKLR 201
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDET 170
GQE+ + +A KG GK+HAK+ A + P L P+ P S +
Sbjct: 202 PGQEVNMELHAVKGVGKDHAKFCAVATASYRLLP----LVVLNPEKPIPPSSAHK----- 252
Query: 171 QHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINE 230
F S G ++ + V V+V ++ L N ++ + +V E
Sbjct: 253 ---------------FQKCFSPGVIRVDP-VTKEVSVDEKNLRN--ESMSREVYRHVEFE 294
Query: 231 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 273
+ + FNVES G PE ++ + V++ K++ ++
Sbjct: 295 DCCQLARVRDHFIFNVESEGFYPPERLLPESIKVMRSKIATIK 337
>gi|448474335|ref|ZP_21602194.1| DNA-directed RNA polymerase subunit D [Halorubrum aidingense JCM
13560]
gi|445817642|gb|EMA67511.1| DNA-directed RNA polymerase subunit D [Halorubrum aidingense JCM
13560]
Length = 250
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 100/242 (41%), Gaps = 58/242 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V NS+V+ DE I R+GLIPLT+ DF V LD
Sbjct: 44 FSIDTVNFVENSSVMFDEMIGLRLGLIPLTT-------------PLDDFEIGDEVTLALD 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + D++S D V AD D++ I++L++GQ L A
Sbjct: 91 VEG----PATAYSGDIESADPLV-------EVAD-------DNVPIIELKEGQRLEFEAT 132
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPDNS--MRHTLFPKPDEWPKSEYS 165
A GKEHAK V + E+D D +R + E P+ E
Sbjct: 133 AVLDSGKEHAKHQGGVSVGYRHLQRVTVEGDLGEFDEDEPRILRGVI-----ETPEGEIV 187
Query: 166 ELDETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
DE ++ + K P + F++E+ G+ E +++ + ++++ LQT+
Sbjct: 188 LTDEFDNDLSEKFPGKEVSVEDVPGAFVFHIETDGSFSVEELLLRAIDSIEERADELQTK 247
Query: 219 LA 220
+A
Sbjct: 248 VA 249
>gi|391867820|gb|EIT77060.1| RNA polymerase I and III, subunit RPA40/RPC40 [Aspergillus oryzae
3.042]
Length = 290
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 31/169 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSR--------DCTCVDFCSE 52
+AI++V + N++V+ DE +A R+GLIPL VD I + R D D
Sbjct: 7 VAIEFVFVHNNTSVIQDEVLAQRLGLIPLKGS--VDGINWMRWFKKATEDDPEGSDPSDY 64
Query: 53 CSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGETD-------- 102
++ LD++C + AD D R + + RD + G +
Sbjct: 65 NTIVLRLDIECTKN-----PNADATENDPRKLYKNAHVYARDITFHPVGRQEQFFTGEDA 119
Query: 103 ------DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DILI KLR GQ++ L + KG G +HAK++P A + PD
Sbjct: 120 IQPVNPDILIAKLRPGQKIDLEMHCIKGIGADHAKFSPVATASYRLLPD 168
>gi|322369534|ref|ZP_08044099.1| DNA-directed RNA polymerase subunit D [Haladaptatus paucihalophilus
DX253]
gi|320551266|gb|EFW92915.1| DNA-directed RNA polymerase subunit D [Haladaptatus paucihalophilus
DX253]
Length = 248
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 98/236 (41%), Gaps = 55/236 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
++ID +++ NS+V+ DE I R+GL+PLT+ +F +V +LD
Sbjct: 43 LSIDTLRVIENSSVMFDEQIGLRLGLVPLTT-------------PPGEFEEGDTVTLSLD 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V + DL S+D V P AD D+I I+ L++GQ L L A
Sbjct: 90 VSG----PGTAFSGDLISSDEMVQP-------AD-------DNIPIIDLKEGQRLELEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDET---------- 170
A G GK+HAK V + + R + DE+ + E L T
Sbjct: 132 AVLGSGKDHAKHQGGVAVGYRH----LQRVEVVGDRDEFGEEEPRILRGTIEDDGELVPT 187
Query: 171 ---QHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
H+ + K PN + F+VES G+ E +V V L ++ L+
Sbjct: 188 ETFDHDLSQRFPGKEVEVHDVPNAFVFDVESDGSFTVEELVTQAVDSLTERADELE 243
>gi|261196646|ref|XP_002624726.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239595971|gb|EEQ78552.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239609550|gb|EEQ86537.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ER-3]
gi|327350214|gb|EGE79071.1| DNA-directed RNA polymerase I and III polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 380
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 116/283 (40%), Gaps = 64/283 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCT--CVDFCSECS--- 54
+AI+ V + N++V+ DE +A R+GL+PLT + E ++ + + R T D SE S
Sbjct: 90 LAIETVYIHNNTSVIQDEVLAHRLGLVPLTGAAEGINWLRWFRQPTEGKPDSGSELSDSN 149
Query: 55 -VEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE---- 100
+ L V+C +D + A + + D PV R YG
Sbjct: 150 TIVLHLSVECTKNPKASANEEDPQKLYNHAHVYAKDITFHPV-GRQEAYFPEPYGAIRSA 208
Query: 101 TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD-NSMRHTL------- 152
DIL+ KLR GQ++ + + KG G +HAK++P A + PD +R L
Sbjct: 209 NPDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPDIRILRPILGQDALKF 268
Query: 153 ---FPKP----DEWPKSEYSE----------------LD--------ETQHEAPYNWEAK 181
FPK D E S+ LD E + + K
Sbjct: 269 ARCFPKGVIGIDSVSAEEASQAGSGYEGHEGEKKAVVLDPFKDTVSRECLRHEEFRGKVK 328
Query: 182 PNK----YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+ + FNVES G + + + + V VLK K L+ LA
Sbjct: 329 LGRIRDHFIFNVESTGQFRSDVLFLESVKVLKLKCRRLKRDLA 371
>gi|67523919|ref|XP_660019.1| hypothetical protein AN2415.2 [Aspergillus nidulans FGSC A4]
gi|40745370|gb|EAA64526.1| hypothetical protein AN2415.2 [Aspergillus nidulans FGSC A4]
gi|259487823|tpe|CBF86802.1| TPA: DNA-directed RNA polymerase I and III subunit Rpc40, putative
(AFU_orthologue; AFUA_2G13720) [Aspergillus nidulans
FGSC A4]
Length = 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 112/280 (40%), Gaps = 62/280 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILY----SRD--CTCVDFCSEC 53
+AI+WV + N++V+ DE +A R+GLIPL S E ++ + + S D + D
Sbjct: 90 LAIEWVYIHNNTSVIQDEVLAQRLGLIPLQGSVEGLNWMQWYNKGSEDEPGSGSDLADYN 149
Query: 54 SVEFTLDVKCVD---------DQTRHVTTADLKSTDARVVPVTSRNRDADMNE---YGET 101
+V LDV+C D + A + + D PV R + E
Sbjct: 150 TVVLRLDVECTKNPNASRDETDPRKLYKNAHVYAKDIVFHPV-GRQEEFFTGEGAIRAVN 208
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP-----------DNSMRH 150
DIL+ KLR GQ++ L + KG G +HAK++P A + P D
Sbjct: 209 PDILVAKLRPGQKIELEMHCIKGIGADHAKFSPVATATYRLMPVIQILRPIIGEDAKKFA 268
Query: 151 TLFPKP----------DEWPKSEY----SELDETQHEA-------------PYNWEAKPN 183
FPK DE +EY EL +A + + K
Sbjct: 269 KCFPKGVIGLEPITAEDERQNAEYRGRGGELKAVVRDAFNDTVSRECLRHDEFKGKVKLG 328
Query: 184 K----YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+ + FN+ES G + + + V VLK K + + L
Sbjct: 329 RIRDHFIFNIESTGQFDSDVLFLESVKVLKLKCARWKRGL 368
>gi|443923219|gb|ELU42493.1| ribonuclease H [Rhizoctonia solani AG-1 IA]
Length = 1023
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 108/255 (42%), Gaps = 43/255 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++V+ DE +A R+GL+P+ +D L + V ++ F L
Sbjct: 761 VAIENVYIWNNTSVIQDEVLAHRLGLVPIRADPA----LLDFPDSAVGPTDRNTLVFKLS 816
Query: 61 VKCVDDQT--RHVTTADLKSTDARVVP--VTSRNRDADMNEYG------ETDDILIVKLR 110
V C + + T + +A V+ + +N++G IL+ KLR
Sbjct: 817 VTCSRNPGVPKDETDPAVLYKNANVLSGHMEWNGVGEQVNDFGNNPPRPHNPKILLAKLR 876
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE-----WPKSEYS 165
GQEL + + KG G++HAK++P A + P R + P + +P ++
Sbjct: 877 PGQELEMELHCVKGVGQDHAKFSPVATASYRLMPHVIFRQPIPPHLCDKFVSCFPSGVFA 936
Query: 166 ------------------------ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIV 201
L + E + + F +ES+G++ N++
Sbjct: 937 VEQGANGQKKVVAKDMRKDTVSREVLRHKEFEGMIELTRIRDFFMFRIESSGSIPAPNLM 996
Query: 202 IMGVTVLKQKLSNLQ 216
M V V++QK+S L+
Sbjct: 997 PMAVDVMRQKISKLK 1011
>gi|357121301|ref|XP_003562359.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
rpac1-like [Brachypodium distachyon]
Length = 360
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 107/282 (37%), Gaps = 83/282 (29%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-----EVVDRILYSRDCTCVDFCSECSV 55
MAI+ V + N++V++DE ++ R+GLIPL +D + D + R+ ++
Sbjct: 100 MAIEKVFMVDNTSVIADEVLSHRLGLIPLDADPRLFDHISDDVPNERN----------TI 149
Query: 56 EFTLDVKCVDDQTR-HVTTADLK----STDARVVPVTSRNRDADMNEYGETD-------- 102
+ L V C R V + L+ + + + +G++
Sbjct: 150 VYKLHVSCEKGSQRLTVKSGQLEWLPEGSQLLMASAAQGEKQKTYTSFGQSQKNISGRSI 209
Query: 103 -----DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD------------ 145
DI I +L GQ + L A+A KG GK HAKW+P A + P+
Sbjct: 210 GVKYKDITIARLGPGQAIELEAHAVKGVGKVHAKWSPVATAWYRMLPEVVLLKEIKDGEA 269
Query: 146 ------------------NSMRHTLFPKPDE---------WPKSEYSELDETQHEAPYNW 178
N + + +P P E EL +
Sbjct: 270 EELVKKCPVNVFDIEDLGNGAKRAVVARPRACTLCRECVMGPTGEQVELRRVR------- 322
Query: 179 EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+ + F +ES GAL PE + V +L++K + ++L+
Sbjct: 323 ----DHFIFTIESTGALPPEVLFTEAVKILEEKCERVISELS 360
>gi|358365562|dbj|GAA82184.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus kawachii IFO 4308]
Length = 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSR--------DCTCVDFCSE 52
+AI++V + N++V+ DE +A R+GLIPL V+ I + R D +
Sbjct: 90 IAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGS--VEGINWMRWFKKPTDDDPNGSNPADY 147
Query: 53 CSVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGET 101
++ LDV+C DD + A + + D PV + + D
Sbjct: 148 NTIVLRLDVECTKNPNADPEEDDPRKLYKNAHVYAKDITFHPVGRQEQFFAGDDAIQPVN 207
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DIL+ KLR GQ + + + KG G +HAK++P A + PD
Sbjct: 208 PDILVAKLRPGQSIEMELHCIKGIGADHAKFSPVATATYRLLPD 251
>gi|126460700|ref|YP_001056978.1| DNA-directed RNA polymerase subunit D [Pyrobaculum calidifontis JCM
11548]
gi|166229320|sp|A3MXZ5.1|RPOD_PYRCJ RecName: Full=DNA-directed RNA polymerase subunit D
gi|126250421|gb|ABO09512.1| DNA-directed RNA polymerase, subunit D [Pyrobaculum calidifontis
JCM 11548]
Length = 258
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 100/239 (41%), Gaps = 44/239 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFC-------SEC 53
+AID V + N++V+ DE +A R+GLIPLT+ +D ++ C SEC
Sbjct: 40 LAIDSVVVVNNTSVMYDEMLAHRLGLIPLTTP--------LKDLPPIEDCESGLVDPSEC 91
Query: 54 SVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQ 113
+V TL V D V DL + V PV DI IVKL +GQ
Sbjct: 92 TVRLTLQVNATGDVV--VYAGDLVADRPDVAPVYK--------------DIPIVKLVEGQ 135
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHE 173
+ + AYAK G ++HAKW + Y R E ++ + L+ T ++
Sbjct: 136 SVVVEAYAKLGRARDHAKWQAALASYYYYPKVVVKREECREMCKEVCRNLENPLECTFNK 195
Query: 174 AP-----------YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
A WE +KY F +ES G E + +LK+K + L+
Sbjct: 196 ATTCKEMCGGGIVVEWEK--DKYVFWIESFGNYDAETALREAFRILKKKFEDFLDALSR 252
>gi|407847030|gb|EKG02938.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A D + +E N +V+ DE +A RIGL+P+ V ++ + + V F + L
Sbjct: 129 LAFDRMLIEENDSVVPDELLAHRIGLVPIAGP--VLKMQFVTESNQVGF-DALDPQRVLV 185
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRN---RDADMNE-YGETDDILIVKLRKGQELR 116
+ + R + + S D + P+ + AD + + DI++ KL GQ L+
Sbjct: 186 FELAAEGRRDAKSTSVYSGDLKWKPLPGQEAWATGADEDRVFLVHPDIILTKLGPGQRLK 245
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCF 140
LRA A KG G HAKW P + VCF
Sbjct: 246 LRAIALKGIGGVHAKWTPVS-VCF 268
>gi|71656797|ref|XP_816940.1| DNA-directed RNA polymerase, alpha subunit [Trypanosoma cruzi
strain CL Brener]
gi|70882101|gb|EAN95089.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A D + +E N +V+ DE +A RIGL+P+ V ++ + + V F + L
Sbjct: 129 LAFDRMLIEENDSVVPDELLAHRIGLVPIAGP--VLKMQFVTESNQVGF-DALDPQRVLV 185
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRN---RDADMNE-YGETDDILIVKLRKGQELR 116
+ + R + + S D + P+ + AD + + DI++ KL GQ L+
Sbjct: 186 FELAAEGRRDAKSTSVYSGDLKWKPLPGQEAWATGADEDRVFLVHPDIILTKLGPGQRLK 245
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCF 140
LRA A KG G HAKW P + VCF
Sbjct: 246 LRAIALKGIGGVHAKWTPVS-VCF 268
>gi|301626012|ref|XP_002942192.1| PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1
[Xenopus (Silurana) tropicalis]
Length = 347
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 24/164 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ D R+ R + +++F L+
Sbjct: 87 MAVEKVYVYNNTSIIQDEILAHRLGLIPIRVDP---RLFEYRSAEEGEGTEIDTLQFELN 143
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNRDADMNEYGETD-------DI 104
VKC + +D + ++ + +P + +D+ + ETD DI
Sbjct: 144 VKCTRNPRASKDCSDPNELYLNHKVYTSHMKWLP---QGNQSDL--FPETDPPRPVHGDI 198
Query: 105 LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSM 148
LI +LR GQE+ + + KG GK+HAK++P A + P+ ++
Sbjct: 199 LIAQLRPGQEISVIMHCVKGIGKDHAKFSPVATASYRLLPEITL 242
>gi|71423439|ref|XP_812461.1| DNA-directed RNA polymerase, alpha subunit [Trypanosoma cruzi
strain CL Brener]
gi|70877243|gb|EAN90610.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi]
Length = 393
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A D + +E N +V+ DE +A RIGL+P+ V ++ + + V F + L
Sbjct: 129 LAFDRMLIEENDSVVPDELLAHRIGLVPIAGP--VLKMQFVTESNQVGF-DALDPQRVLV 185
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRN---RDADMNE-YGETDDILIVKLRKGQELR 116
+ + R + + S D + P+ + AD + + DI++ KL GQ L+
Sbjct: 186 FELAAEGRRDAKSTSVYSGDLKWKPLPGQEAWATGADEDRVFLVHPDIILTKLGPGQRLK 245
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCF 140
LRA A KG G HAKW P + VCF
Sbjct: 246 LRAIALKGIGGVHAKWTPVS-VCF 268
>gi|71013592|ref|XP_758635.1| hypothetical protein UM02488.1 [Ustilago maydis 521]
gi|46098293|gb|EAK83526.1| hypothetical protein UM02488.1 [Ustilago maydis 521]
Length = 320
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++++ DE ++ R+GL+PL + D++ D + +V F L
Sbjct: 131 VAIEHVYIWNNTSIIQDEVLSHRLGLVPLAINP--DKVAMRMPGDEADDSN--TVVFHLK 186
Query: 61 VKCVDDQT--RHVTTAD-------LKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLR 110
KC +++ R T D + S R + +D AD D ILI KLR
Sbjct: 187 AKCERNRSAARGETDPDKLYIGHNVYSEQLRWDAKGGQEKDFADSPPRPVQDKILIAKLR 246
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE 158
GQEL L + +KG GK+HAK++P A + P + L P PDE
Sbjct: 247 PGQELDLELHCEKGIGKDHAKFSPVATATYRLLPHIQL---LQPIPDE 291
>gi|222480231|ref|YP_002566468.1| RNA polymerase insert [Halorubrum lacusprofundi ATCC 49239]
gi|222453133|gb|ACM57398.1| RNA polymerase insert [Halorubrum lacusprofundi ATCC 49239]
Length = 250
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 99/242 (40%), Gaps = 58/242 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V+ NS+V+ DE I R+GLIPL + DF V LD
Sbjct: 44 FSIDTVRFVENSSVMFDEMIGLRLGLIPLKT-------------PLDDFEVGDEVTLALD 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + D++S D +V V D+I I++L++GQ L A
Sbjct: 91 VEG----PATAYSGDIESADP-LVEVAD-------------DNIPIIELKEGQRLEFEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPDNS--MRHTLFPKPDEWPKSEYS 165
A GKEHAK V + E+D D +R + E P E
Sbjct: 133 AVLDTGKEHAKHQGGVSVGYRHLQRVSVEGDLGEFDDDEPRILRGVI-----ETPDGEIE 187
Query: 166 ELDETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
DE ++ + K P + F++E+ G+ E +++ + ++++ LQT+
Sbjct: 188 LTDEFDNDLSERFPGKEVSVEDVPGAFVFHIETDGSFSVEELLLRAIDSIEERADELQTK 247
Query: 219 LA 220
+A
Sbjct: 248 VA 249
>gi|448465603|ref|ZP_21598869.1| DNA-directed RNA polymerase subunit D [Halorubrum kocurii JCM
14978]
gi|445814935|gb|EMA64883.1| DNA-directed RNA polymerase subunit D [Halorubrum kocurii JCM
14978]
Length = 250
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 58/242 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V+ NS+V+ DE I R+GLIPL + DF V LD
Sbjct: 44 FSIDTVRFVENSSVMFDEMIGLRLGLIPLKT-------------PLDDFEVGDEVTLALD 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + D++S+D +V V D++ I++L++GQ L A
Sbjct: 91 VEG----PATAYSGDIESSDP-LVEVAD-------------DNVPIIELKEGQRLEFEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPDNS--MRHTLFPKPDEWPKSEYS 165
A GKEHAK V + E+D D +R + E P E
Sbjct: 133 AVLDTGKEHAKHQGGVSVGYRHLQRVSVEGDLGEFDDDEPRILRGVI-----ETPDGEIE 187
Query: 166 ELDETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
DE ++ + K P + F++E+ G+ E +++ + ++++ LQT+
Sbjct: 188 LTDEFDNDLSKRFPGKEVSIEDVPGAFVFHIETDGSFSVEELLLRAIDSIEERADELQTK 247
Query: 219 LA 220
+A
Sbjct: 248 VA 249
>gi|407407741|gb|EKF31429.1| DNA-directed RNA polymerase, alpha subunit, putative [Trypanosoma
cruzi marinkellei]
Length = 393
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A D + +E N +V+ DE +A RIGL+P+ V ++ + + V F + L
Sbjct: 129 LAFDRMLIEENDSVVPDEILAHRIGLVPIAGP--VLKMQFVTESNQVGF-DALDPQRVLV 185
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRN---RDADMNE-YGETDDILIVKLRKGQELR 116
+ + R + + S D + P+ + AD + + DI++ KL GQ L+
Sbjct: 186 FELAAEGRRDAKSTSVYSGDLKWKPLPGQEAWATGADEDRVFLVHPDIILTKLGPGQRLK 245
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCF 140
LRA A KG G HAKW P + VCF
Sbjct: 246 LRAIALKGIGGVHAKWTPVS-VCF 268
>gi|429962182|gb|ELA41726.1| hypothetical protein VICG_01230 [Vittaforma corneae ATCC 50505]
Length = 298
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 16/144 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI +V + N+TV DE+IA R+GLIPL ++ + Y +D E + E L+
Sbjct: 65 MAIHYVSVYENNTVFPDEYIAHRLGLIPLEANP--EYFSYFKD--------EETFENVLN 114
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ D+T +L S D VP + D + ++L+ K+ G ++ +
Sbjct: 115 FRI--DKTADKEPVNLMSDDIEFVPAEGQ----DHFSFRFKPNVLVCKMVPGNQVEMTFK 168
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDP 144
A KG G++HAKW+P + + P
Sbjct: 169 AIKGRGEQHAKWSPVSLCSYRIMP 192
>gi|357460223|ref|XP_003600393.1| DNA-directed RNA polymerase subunit D [Medicago truncatula]
gi|355489441|gb|AES70644.1| DNA-directed RNA polymerase subunit D [Medicago truncatula]
Length = 399
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 121/306 (39%), Gaps = 59/306 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE ++ R+GLIP+ +D ++ D + + ++ F
Sbjct: 124 MAIERVYIANNTSLVQDEVLSHRLGLIPIDADP---KLFEYPDDAGGENNEKNTIVFKQH 180
Query: 61 VKCVDDQTRHVTTAD----LKSTDARVVPVTSRNRDADMNEYGETD-------------- 102
V+C Q R +D L + + T D + +
Sbjct: 181 VRCEKGQPRLTVKSDTLKWLPNGSELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPY 240
Query: 103 --DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWP 160
D+++ KL GQE+ L A+A KG GK HAKW+P A + P+ + +
Sbjct: 241 NLDVIVAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLTKDV-------- 292
Query: 161 KSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIV--IMGVTVLKQKLSNLQTQ 218
DE E AK F++E G + + +V T+ ++ +
Sbjct: 293 ------KDELAEELVSKCPAK----VFDIEDIGRGRKKAVVKNARACTLCRECIREADEG 342
Query: 219 LAH-------DRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSN 271
DRV + + + F +ES GA+ P+ + V +L+ K
Sbjct: 343 EEGGEGEKWTDRV---------SLRRVKDHFIFTIESTGAIPPDVLFTEAVKILEDKCER 393
Query: 272 LQTQLA 277
+ T+L+
Sbjct: 394 VITELS 399
>gi|76802059|ref|YP_327067.1| DNA-directed RNA polymerase subunit D [Natronomonas pharaonis DSM
2160]
gi|121723150|sp|Q3IQT6.1|RPOD_NATPD RecName: Full=DNA-directed RNA polymerase subunit D
gi|76557924|emb|CAI49508.1| DNA-directed RNA polymerase subunit D [Natronomonas pharaonis DSM
2160]
Length = 247
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 100/236 (42%), Gaps = 48/236 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
++ID +++ NS+V+ DE +A R+GL+PLT T D+ +V +D
Sbjct: 43 LSIDTLRVVENSSVMFDEQLALRLGLVPLT--------------TPDDYEPGETVTLAID 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D +V P AD N I I++L+ Q+L L A
Sbjct: 89 VEG----PATAYSGDLVSSDDKVQP-------ADEN-------IPIIELKDDQQLELEAD 130
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWPKSEY- 164
A G GK+HAK V FE D +R + D E+
Sbjct: 131 ATLGRGKDHAKHQGGVAVGYRHLQRVEVVGEKGEFEDDEPEILRGVIEEDGDLIETGEFD 190
Query: 165 SELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
++L + E PN + F+VE+ G++ E +V+ + + L+ +A
Sbjct: 191 NDLSQRYPGKEVEVEEVPNAFVFDVETDGSMPVEELVLKAAESIAARADELEEAVA 246
>gi|115384348|ref|XP_001208721.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus terreus NIH2624]
gi|114196413|gb|EAU38113.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Aspergillus terreus NIH2624]
Length = 374
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 127/302 (42%), Gaps = 46/302 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSECS----- 54
+AI++V + N++V+ DE +A R+GLIPL S E ++ + + + T D S +
Sbjct: 90 LAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGSVEGINWMRWFKKPTDDDPESGSTPSDYN 149
Query: 55 -VEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGETD 102
+ LDV+C DD + A + + D PV + + D
Sbjct: 150 TIVLRLDVECTKNPNAAKDEDDPRKLYRNAHVYAKDITFHPVGRQEQFFTGDDAIQPVNP 209
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE---- 158
DILI KLR GQ++ + + KG G +HAK++P + PD + + +
Sbjct: 210 DILIAKLRPGQKISMELHCIKGIGADHAKFSPVCTASYRLLPDIKIERPIIGDDAKKFAK 269
Query: 159 -WPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSN--L 215
+P+ T+ EA AK + E G +K TV ++ L +
Sbjct: 270 CFPRGVIGLEPVTREEA-----AKKGSGYEGHE--GEMKAVVRDAFNDTVSRECLRHEEF 322
Query: 216 QTQLAHDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 275
Q ++ RV + + FNVES+G + + + V VLK K + +
Sbjct: 323 QGKVKLGRV--------------RDHFIFNVESSGQFNSDVLFLESVKVLKLKCARWKRG 368
Query: 276 LA 277
LA
Sbjct: 369 LA 370
>gi|295663793|ref|XP_002792449.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226279119|gb|EEH34685.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 380
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 19/164 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSEC------ 53
+AI+ V + N++V+ DE +A R+GL+PLT S E ++ + + R D S
Sbjct: 90 LAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGINWLRWFRQPNEGDPSSGSELADYN 149
Query: 54 SVEFTLDVKCVD---------DQTRHVTTADLKSTDARVVPVTSRNR---DADMNEYGET 101
++ L+V+C D + + A + + D PV + + D
Sbjct: 150 TIVLHLNVECKKNPKASPNELDPLKLYSHAHVYAKDITFQPVGRQEAYFPEPDGGIRPTN 209
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DIL+ KLR GQ++ + + KG G +HAK++P A + PD
Sbjct: 210 PDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPD 253
>gi|161899301|ref|XP_001712877.1| DNA-directed RNA polymerase I 40KDa subunit [Bigelowiella natans]
gi|75756371|gb|ABA27265.1| DNA-directed RNA polymerase I 40KDa subunit [Bigelowiella natans]
Length = 293
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 22/156 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL--------------TSDEVVDRILYSRDCTC 46
+AI+ + + N+++L+D +A RIGLIPL D+ +L ++
Sbjct: 66 IAIEDIYVFENTSILNDNILAHRIGLIPLRINPKQIQFQKMYCLKDQTNSVVLILKNS-- 123
Query: 47 VDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILI 106
+FC+ S T D+ C D R L +RV + + N + +DILI
Sbjct: 124 -NFCN--SFRLTKDIFCKDFSYRRY--GSLIPHQSRVY-FSIKQDIVKKNSFLTFEDILI 177
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEY 142
KL+ Q L L A+ KKG+ +H+K++P A + Y
Sbjct: 178 TKLKPKQLLFLEAHCKKGYSTQHSKYSPVAAAWYLY 213
>gi|255933139|ref|XP_002558040.1| Pc12g12250 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582659|emb|CAP80852.1| Pc12g12250 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 374
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 18/163 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL-TSDEVVDRILYSRDCTCVDF------CSEC 53
+AI+ + N++V+ DE +ASR+GLIPL S E ++ + + + + C
Sbjct: 90 IAIEDCFIHNNTSVIQDEVLASRLGLIPLKGSIEGINWMHWFKKASEDGSEEEDGPCDFN 149
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRD--ADMNEYGETD 102
++ LDV+C D + T A + + D +PV + + D
Sbjct: 150 TIVLHLDVECYKNEYADKDEQDPRKLYTNAHVYAKDLMYMPVGRQEQYFVGDGAIAPVNP 209
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DILI KLR GQ++ + + +KG G +HAK++P A + PD
Sbjct: 210 DILIAKLRPGQKIEMELHCQKGIGADHAKFSPVATASYRLLPD 252
>gi|226287322|gb|EEH42835.1| DNA-directed RNA polymerases I and III subunit RPAC1
[Paracoccidioides brasiliensis Pb18]
Length = 380
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 19/164 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSEC------ 53
+AI+ V + N++V+ DE +A R+GL+PLT S E ++ + + R D S
Sbjct: 90 LAIETVYIHNNTSVIQDEVLAHRLGLVPLTGSPEGINWLRWFRQPNEGDPSSGSELADYN 149
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNR---DADMNEYGET 101
++ L+V+C D + + A + + D PV + + D
Sbjct: 150 TIVLHLNVECKKNPKASPDEQDPLKLYSHAHVYAKDITFQPVGRQEAYFPEPDGGIRPTN 209
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DIL+ KLR GQ++ + + KG G +HAK++P A + PD
Sbjct: 210 PDILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPD 253
>gi|452821148|gb|EME28182.1| DNA-directed RNA polymerase III subunit C5 [Galdieria sulphuraria]
Length = 300
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 23/158 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI++V + N++V+ DE +A R+GLIP+ +D D R + ++ L
Sbjct: 84 MAIEYVLISDNTSVIHDEILAHRLGLIPIQADP--DGFQDYRKGE--EPRENNTIVLKLQ 139
Query: 61 VKCVDD-QTRH-------VTTADLKSTDARVVPVTSRNRDADMNEYGE------TDDILI 106
V+C + Q R +++ S D P+ ++ + ++G+ ++DILI
Sbjct: 140 VECKQNPQARPGAEPEELYINSNVYSRDLVWEPLGNQ-----LEKFGKNGIRPVSEDILI 194
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
KLR Q + L A KG GKEHAKW+P A + P
Sbjct: 195 AKLRPKQRIELEARCIKGIGKEHAKWSPVATAYYAMLP 232
>gi|448460443|ref|ZP_21597268.1| DNA-directed RNA polymerase subunit D [Halorubrum lipolyticum DSM
21995]
gi|445807184|gb|EMA57270.1| DNA-directed RNA polymerase subunit D [Halorubrum lipolyticum DSM
21995]
Length = 250
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 98/243 (40%), Gaps = 60/243 (24%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V+ NS+V+ DE I R+GL+PLT+ DF V LD
Sbjct: 44 FSIDTVRFVENSSVMFDEMIGLRLGLVPLTT-------------PLDDFEVGDEVTLALD 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDD-ILIVKLRKGQELRLRA 119
V+ + D++S D V G DD + I++L++GQ L A
Sbjct: 91 VEG----PATAYSGDIESADPLV---------------GVADDNVPIIELKEGQRLEFEA 131
Query: 120 YAKKGFGKEHAKWNPTAGVCF-------------EYDPDNS--MRHTLFPKPDEWPKSEY 164
A GKEHAK V + E+D D +R + E P
Sbjct: 132 TAVLDSGKEHAKHQGGVSVGYRHLQRVSVEGDLGEFDDDEPRILRGVI-----ETPDGSI 186
Query: 165 SELDETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT 217
DE ++ + K P + F++E+ G+ E +++ + ++++ LQT
Sbjct: 187 ELTDEFDNDLSERFPGKEVSVEDVPGAFVFHIETDGSFSVEELLLRAIDSIEERADELQT 246
Query: 218 QLA 220
++A
Sbjct: 247 KVA 249
>gi|448440158|ref|ZP_21588406.1| DNA-directed RNA polymerase subunit D [Halorubrum saccharovorum DSM
1137]
gi|445690675|gb|ELZ42885.1| DNA-directed RNA polymerase subunit D [Halorubrum saccharovorum DSM
1137]
Length = 250
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 101/246 (41%), Gaps = 66/246 (26%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD----EVVDRILYSRDCTCVDFCSECSVE 56
+ID V+ NS+V+ DE I R+GL+PLT+ E+ D + + D +
Sbjct: 44 FSIDTVRFVENSSVMFDEMIGLRLGLVPLTTPLDDFEIGDEVTLALDVEG------PATA 97
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
++ D++C D V AD D+I I++L++GQ L
Sbjct: 98 YSGDIECAD---PLVEVAD--------------------------DNIPIIELKEGQRLE 128
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCF-------------EYDPDNS--MRHTLFPKPDEWPK 161
A A GKEHAK V + E+D D +R + E P
Sbjct: 129 FEADAVLDTGKEHAKHQGGVSVGYRHLQRVTVEGDLGEFDDDEPRILRGVI-----ETPD 183
Query: 162 SEYSELDETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSN 214
+ DE ++ + K P + F++E+ G+ E +++ + ++++
Sbjct: 184 GDIELTDEFDNDLSERFPGKEVSVEDVPGAFVFHIETDGSFDVEELLLRAIDSIEERADE 243
Query: 215 LQTQLA 220
LQT++A
Sbjct: 244 LQTKVA 249
>gi|134056600|emb|CAK47675.1| unnamed protein product [Aspergillus niger]
Length = 359
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 17/162 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSECSVEFTL 59
+AI++V + N++V+ DE +A R+GLIPL S E ++ + + + T D ++
Sbjct: 90 IAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGSVEGINWMRWFKKPTDDDPNGSSPADYNT 149
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGETD--------------D 103
V +D + AD + TD R + + +D + G + D
Sbjct: 150 IVLRLDVECTKNPNADPEETDPRKLYKNAHVYAKDITFHPVGRQEQFFAGDDAIQPVNPD 209
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
IL+ KLR GQ + + + KG G +HAK++P A + PD
Sbjct: 210 ILVAKLRPGQAIEMELHCIKGIGADHAKFSPVATATYRLLPD 251
>gi|303388073|ref|XP_003072271.1| RNA polymerase I and III subunit AC40 [Encephalitozoon intestinalis
ATCC 50506]
gi|303301410|gb|ADM10911.1| RNA polymerase I and III subunit AC40 [Encephalitozoon intestinalis
ATCC 50506]
Length = 305
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 72/148 (48%), Gaps = 21/148 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD----EVVDRILYSRDCTCVDFCSECSVE 56
MAI V L+ N +V DEFIA R+GLIPL D E V+ + R+ S++
Sbjct: 68 MAIKDVFLKENESVFPDEFIAHRLGLIPLEVDPEMFEFVEGEMNERN----------SLK 117
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
F+LDVK + +V + D+K +P+ ++ ++ + +L+ KL GQ++
Sbjct: 118 FSLDVKNENKDVLNVYSDDIKW-----IPLGNQREMIKNAKF--SSRVLMFKLAHGQKIS 170
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
K GK HAKW+P + P
Sbjct: 171 AEVVCTKNTGKTHAKWSPVCPATYRLLP 198
>gi|317026864|ref|XP_001399683.2| DNA-directed RNA polymerases I and III subunit RPAC1 [Aspergillus
niger CBS 513.88]
gi|350634564|gb|EHA22926.1| hypothetical protein ASPNIDRAFT_206792 [Aspergillus niger ATCC
1015]
Length = 373
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 17/162 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSECSVEFTL 59
+AI++V + N++V+ DE +A R+GLIPL S E ++ + + + T D ++
Sbjct: 90 IAIEYVFVHNNTSVIQDEVLAQRLGLIPLKGSVEGINWMRWFKKPTDDDPNGSSPADYNT 149
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGETD--------------D 103
V +D + AD + TD R + + +D + G + D
Sbjct: 150 IVLRLDVECTKNPNADPEETDPRKLYKNAHVYAKDITFHPVGRQEQFFAGDDAIQPVNPD 209
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
IL+ KLR GQ + + + KG G +HAK++P A + PD
Sbjct: 210 ILVAKLRPGQAIEMELHCIKGIGADHAKFSPVATATYRLLPD 251
>gi|340924182|gb|EGS19085.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide-like
protein [Chaetomium thermophilum var. thermophilum DSM
1495]
Length = 374
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 24/165 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL---------YSRDCTCVDFC 50
+AI+ V + N++V+ DE +A R+GLIP E + + L + + DF
Sbjct: 90 LAIETVFINNNTSVIQDEVLAHRLGLIPFKGGKEGLHKFLKWWKKPADESQINNSYYDFN 149
Query: 51 SECSVEFTLDVKCVD---------DQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYG 99
+ V L+VKC + D T+ A + + D PV +++ +
Sbjct: 150 T---VSLRLEVKCEENPDAAPGETDPTKLYKHAHVYARDIEFCPVGRQHKYFSGENAIRP 206
Query: 100 ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI KLR GQE+ L + KG G +HAK++P A + P
Sbjct: 207 VNPDILIAKLRPGQEISLSMHMHKGVGSDHAKFSPVATASYRLLP 251
>gi|425767889|gb|EKV06440.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Penicillium digitatum Pd1]
gi|425769702|gb|EKV08188.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Penicillium digitatum PHI26]
Length = 374
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 18/163 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL-TSDEVVDRILY----SRDCTCVD--FCSEC 53
+AI+ + N++V+ DE +A R+GLIPL S E ++ + + S D T + C
Sbjct: 90 IAIEDCFIHNNTSVIQDEVLAQRLGLIPLKGSIEGINWMHWYKKASEDGTEEEDGPCDFN 149
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRD--ADMNEYGETD 102
++ LDV+C D + T A + + D +PV + + D
Sbjct: 150 TIVLHLDVECYKNEYADKDEQDPRKLYTNAHVYAKDLMYMPVGRQEQYFVGDGAIAPVNP 209
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DILI KLR GQ++ + + +KG G +HAK++P A + PD
Sbjct: 210 DILIAKLRPGQKIEMELHCQKGIGADHAKFSPVATASYRLLPD 252
>gi|294894048|ref|XP_002774720.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
gi|239880227|gb|EER06536.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
Length = 310
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 10/159 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECS-----V 55
+AI+ + N+ V+ DE +A R+GL+P+ D +D + + + + + +
Sbjct: 37 IAIEKCYVYQNTGVIHDEILAHRLGLVPIYCD--IDSLKMRDEDAPPEQRDDVTDPDTWI 94
Query: 56 EFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRN--RDADMNEYGETDDILIVKLRKGQ 113
F+L+ C + + S D + VP+ + R D DD+LI KLR GQ
Sbjct: 95 CFSLEKVCPQSHPPR-ESMPVYSGDLKWVPLNAEQEERYKDDPPRPVYDDVLITKLRCGQ 153
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL 152
EL ++ + KG GK HAKW+P + PD ++ +
Sbjct: 154 ELEIKCFCCKGIGKIHAKWSPVCTATYRLMPDIILKEPI 192
>gi|255071753|ref|XP_002499551.1| predicted protein [Micromonas sp. RCC299]
gi|226514813|gb|ACO60809.1| predicted protein [Micromonas sp. RCC299]
Length = 394
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 124/329 (37%), Gaps = 77/329 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE A R+GLIP+ +D L+ + ++ F ++
Sbjct: 90 MAIEKVYMVNNTSVIQDEVFAHRLGLIPIRADPR----LFEYKAEGETYNERNTIVFKMN 145
Query: 61 VKCVDDQTRHVTTADLKS----------------------------TDARVVPVTSRN-- 90
V+C ++T + L + T ++ + RN
Sbjct: 146 VRCYREKTDDGSKGPLMNSFVYTNELVWLPKGSELPPDEESKFTAFTQSQAEYLKERNDE 205
Query: 91 ----------------RDADMNEYGET-DDILIVKLRKGQELRLRAYAKKGFGKEHAKWN 133
D D NE DDIL+ K+ GQE+ L A+ KG GKEHAKW+
Sbjct: 206 AAAAAAAAGEEVTPLYGDNDPNEIATVHDDILLCKMVAGQEIELEAHCVKGQGKEHAKWS 265
Query: 134 PTAGVCFEYDPDNSM--RHTLFPKPDEWPKSEYSELDETQHEAPYNWEAKPNKYFFNVES 191
P + P + L + + E ++ D + + Y W E
Sbjct: 266 PVGTTWYRMVPKVEFIDKDYLDGEDADVFMKECNDFDPSHN--CYGW----------FEK 313
Query: 192 AGALKPENIVIM----GVTVLKQKLSNLQTQLAHDRVFYVINEAPYNWEAKPNKYFFNVE 247
G K E V + G +++ L + D V+ + + F VE
Sbjct: 314 DGGKKGEKCVKVVNERGCDYCLERVRTLCGEPGWDEKVRVLKSKSH--------FIFTVE 365
Query: 248 SAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+AG L P+ + V VL K ++ + L
Sbjct: 366 TAGQLPPDVLFKEAVKVLASKCQSVLSTL 394
>gi|340344295|ref|ZP_08667427.1| RNA polymerase insert [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339519436|gb|EGP93159.1| RNA polymerase insert [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 118
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 61/151 (40%), Gaps = 50/151 (33%)
Query: 66 DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGF 125
D TR + ++DL S D V +D I IV+L GQ +++ YA+ G
Sbjct: 10 DATRTILSSDLTSEDESV--------------KATSDKIPIVQLAAGQRIKVECYARLGR 55
Query: 126 GKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAKPNKY 185
G EHAKWN + S L ET E N+
Sbjct: 56 GTEHAKWNS---------------------------ANISVLTETDKE---------NER 79
Query: 186 FFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
VES GALKPE I++ GV L +LS +
Sbjct: 80 ILTVESTGALKPEQIILAGVDELSNRLSEFK 110
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 238 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 273
K N+ VES GALKPE I++ GV L +LS +
Sbjct: 75 KENERILTVESTGALKPEQIILAGVDELSNRLSEFK 110
>gi|294891094|ref|XP_002773417.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239878570|gb|EER05233.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 365
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 10/159 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECS-----V 55
+AI+ + N+ V+ DE +A R+GL+P+ D +D + + + + + +
Sbjct: 92 IAIEKCYVYQNTGVIHDEILAHRLGLVPIYCD--IDSLKMRDEDAPPEQRDDVTDPDTWI 149
Query: 56 EFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRN--RDADMNEYGETDDILIVKLRKGQ 113
F+L+ C + + S D + VP+ + R D DD+LI KLR GQ
Sbjct: 150 CFSLEKVCPQSHPPR-ESMPVYSGDLKWVPLNAEQEERYKDDPPRPVYDDVLITKLRCGQ 208
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL 152
EL ++ + KG GK HAKW+P + PD ++ +
Sbjct: 209 ELEIKCFCCKGIGKIHAKWSPVCTATYRLMPDIILKEPI 247
>gi|403419367|emb|CCM06067.1| predicted protein [Fibroporia radiculosa]
Length = 377
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 15/153 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++V+ DE +A R+GL+PL D + Y D ++ F L+
Sbjct: 98 LAIENVYVWNNTSVIHDEVLAHRLGLVPLNVDPSL--FDYREDVPT----DRNTLVFRLN 151
Query: 61 VKCVDDQT--------RHVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRK 111
V C D++ R +KS D +P + A +I++ KLR
Sbjct: 152 VACEVDKSASKEKGASRKFLHELVKSGDLEWIPQGEQAAVFAGCTPAPTNKEIVLAKLRP 211
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
GQE+ + +A K GK HAKW+P A + P
Sbjct: 212 GQEIEMELHAIKNVGKVHAKWSPVATASYRLHP 244
>gi|332030550|gb|EGI70238.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Acromyrmex
echinatior]
Length = 371
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 16/148 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL-YS-RDCTCVDFCSEC-SVEF 57
MAI+ V + N++++ DE +A R+GLIPL +D R+ YS D D S+ ++ +
Sbjct: 27 MAIEKVYIINNTSLIQDEVLAHRLGLIPLRADP---RLFEYSPNDKKTDDTVSDNDTLRY 83
Query: 58 TLDVKC-VDDQTRHVT--------TADLKSTDARVVPVTSRNRDADMNEYGETD-DILIV 107
L V C ++ Q + + + S D + VP+ + + G + DILI
Sbjct: 84 ELKVTCNINPQAPKNSRLPEDMYKNSKVYSKDIKWVPIGRQAEKFKAEQIGILENDILIC 143
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPT 135
K+R G E+ L +A KG GK+HAK++P
Sbjct: 144 KMRPGHEIHLFMHAVKGIGKDHAKFSPV 171
>gi|170087654|ref|XP_001875050.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650250|gb|EDR14491.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 353
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 11 NSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDD--QT 68
N++V+ DE ++ R+GLIPL D ++ ++ + ++ F + + C +
Sbjct: 92 NTSVVVDEVLSQRLGLIPLNIDP---DLIVMKETSADQATDRNTIVFEIKLTCERNPKAK 148
Query: 69 RHVTTADLKSTDARVV-------PVTSRNRDADMNEYGETD-DILIVKLRKGQELRLRAY 120
+ T D + V+ P + N T+ +I++ KLR GQ++ + +
Sbjct: 149 KDSTDPDESYINHEVLSSHLVWKPAGEQEEVFAGNPPAPTNPNIVLAKLRPGQDVHVELH 208
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW-------------PKSEYSEL 167
A KG GK+HAK+ P A + P ++ + P E P+++ +
Sbjct: 209 AMKGVGKDHAKYCPVATASYRLLPHIKIKKPIPPHLGEKFQKCFSPGVIKIDPRTKEVSV 268
Query: 168 DE-------TQHEAPYNWEAKPNK--------YFFNVESAGALKPENIVIMGVTVLKQKL 212
DE E + E K + + FNVES GA PE ++ + V+++KL
Sbjct: 269 DEHNVRKDTVSREVLRHPEFKDSVELSRVRDFFLFNVESEGAYSPERMLTEAIKVMREKL 328
Query: 213 SNLQ 216
++
Sbjct: 329 KKIR 332
>gi|331225845|ref|XP_003325593.1| DNA-directed RNA Polymerase III subunit C5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304583|gb|EFP81174.1| DNA-directed RNA Polymerase III subunit C5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 359
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 50/261 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V + N++++ DE +A R+GL+PL D + + T ++ ++ F L
Sbjct: 99 VAIEDVFVWNNTSLVHDEVLAQRLGLVPLKIDPRLIDMRTDEGATDLN-----TIVFKLV 153
Query: 61 VKCVDDQTRHVTTAD-LKSTDARVVPVTS-----RNRDADMNEYGE------TDDILIVK 108
V C + T D LK +V + + DM +G +DI++VK
Sbjct: 154 VNCRRNPHVPKTEKDPLKLYQNSLVTTEALEWEPKGDQVDM--FGSEPPRPVQNDIVLVK 211
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD----------- 157
+R GQE+R + KG K+HAK++P A + P + + H P+PD
Sbjct: 212 MRPGQEIRAEMHCVKGIAKDHAKFSPVATASYRLLP-HIVIHEPIPEPDCLKFQSCFSPG 270
Query: 158 ----------------EWPKSEYSELDETQH---EAPYNWEAKPNKYFFNVESAGALKPE 198
+ P+++ + +H E + + FNVES G P+
Sbjct: 271 VIEIVNGPKGGKTCKVKNPRNDSVSREVLRHPEFEGKVTLGRVRDHFIFNVESTGVYSPQ 330
Query: 199 NIVIMGVTVLKQKLSNLQTQL 219
I + VL K+ ++ L
Sbjct: 331 EIPLEACEVLLLKIRTVRASL 351
>gi|365757905|gb|EHM99776.1| Rpc40p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 224
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 28/141 (19%)
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKS 162
DIL+ KLR GQE+ L+A+ G G +HAK++P + + P ++ ++ + + +
Sbjct: 79 DILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQSIKGESAKRFQK 138
Query: 163 EYSE----LDETQHEAPYNWEAKP-----------------------NKYFFNVESAGAL 195
+ +DET EA Y +A+ N + FNVESAGA+
Sbjct: 139 CFPPGVIGIDETSREA-YVKDARKDTVSREVLRYEEFADKVKLGRVRNHFIFNVESAGAM 197
Query: 196 KPENIVIMGVTVLKQKLSNLQ 216
PE I V +LK K L+
Sbjct: 198 TPEEIFFKSVRILKNKAEYLK 218
>gi|390597050|gb|EIN06450.1| RBP11-like subunits of RNA polymerase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 379
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 112/279 (40%), Gaps = 75/279 (26%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSE-CSVEFTL 59
+AI+ V + N++V+ DE ++ R+GL+PL D +L RD D ++ ++ F L
Sbjct: 92 IAIEHVYVWNNTSVIVDEVLSHRLGLVPLNVDPA---LLDERDPPPDDQATDRNTIVFRL 148
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRD------------------ADMNEY--- 98
V C R + K PV ++ D D Y
Sbjct: 149 HVAC----ERKKKDSKAKGKGKEPQPVEEQHPDELYVNHEVLSGQLEWVPQGDQASYEPF 204
Query: 99 ------GETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL 152
DI++ KLR GQE+ + +A K GK+HAK+ P A + P H +
Sbjct: 205 IKKRPAPTNPDIVLAKLRPGQEIEMELHAVKSVGKDHAKFCPVATASYRLLP-----HII 259
Query: 153 F----PKPDEW----------------PKSEYSELDE---------------TQHEAPYN 177
P P E+ PK++ +D+ + E +
Sbjct: 260 LNPDKPVPPEYAEKFQKCFAPGVIKVDPKTKAVSVDQKNVRKETMSREVFRHPEFEGCVD 319
Query: 178 WEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+ + FN+ES GA +P+ ++ V+V++ K++ ++
Sbjct: 320 LRRVRDYFLFNIESEGAYEPQRLMHEAVSVMRSKIATIR 358
>gi|13541396|ref|NP_111084.1| DNA-directed RNA polymerase subunit D [Thermoplasma volcanium GSS1]
gi|20978715|sp|Q97B93.1|RPOD_THEVO RecName: Full=DNA-directed RNA polymerase subunit D
gi|14324779|dbj|BAB59706.1| DNA-directed RNA polymerase D [Thermoplasma volcanium GSS1]
Length = 271
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 33/169 (19%)
Query: 11 NSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD-FCSECSVEFTLDVKCVDDQTR 69
+S L DE +A R+GLIPL +D ++ + C+C CS C+V ++++
Sbjct: 61 SSLPLFDEMVAHRLGLIPLKTDLSLN---FRDQCSCGGKGCSLCTVTYSIN----KIGPA 113
Query: 70 HVTTADLKS-TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKE 128
V + D+++ + +VPV DI IVKL Q + + A A G KE
Sbjct: 114 SVMSGDIQAISHPDLVPVDP--------------DIPIVKLGAKQAILITAEAILGTAKE 159
Query: 129 HAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW-------PKSEYSELDET 170
HAKW T+GV ++Y + + LF ++W PKS SE + T
Sbjct: 160 HAKWQVTSGVAYKYHREFEVNKKLF---EDWAKIKERCPKSVLSEDENT 205
>gi|119189173|ref|XP_001245193.1| hypothetical protein CIMG_04634 [Coccidioides immitis RS]
gi|392868091|gb|EAS33833.2| DNA-directed RNA polymerase I and III polypeptide [Coccidioides
immitis RS]
Length = 382
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 116/283 (40%), Gaps = 64/283 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL-TSDEVVDRILYSR------DCTCVDFCSEC 53
+AI++V + N++VL DE ++ R+GL+PL S E ++ + + R +
Sbjct: 90 LAIEFVFIHNNTSVLHDEVLSHRLGLVPLKGSLEGINWMSWFRMPKEGEPDSGSPASDSN 149
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-- 102
++ L+V+C DD T+ A + + D PV R +G
Sbjct: 150 TIVLKLNVECTKNQNARPDEDDPTKLYNNAHVYAKDIVFEPV-GRQAAFFSGPHGVIQPA 208
Query: 103 --DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL-------- 152
DIL+ KLR GQ++ + + KG G++HAK++P A + PD + +
Sbjct: 209 YPDILLAKLRPGQKIDIEMHCIKGIGQDHAKFSPVATASYRLLPDIQITRPILGNDAVKF 268
Query: 153 ---FPKP----------DEWPKSEYSELDETQHEA----PYN------------WEAK-- 181
FPK D E E Q +A P+ ++ K
Sbjct: 269 ANCFPKGVIGIEQVTAEDAAQAGSGYEGQEGQKKAVVVDPFKDTVSRECLRHEEFKGKVK 328
Query: 182 ----PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
+ + FN+ES G + + + V VLK K + L+ +A
Sbjct: 329 LGRVRDHFIFNIESVGQFNSDLLFLESVKVLKLKCARLKRNVA 371
>gi|303323289|ref|XP_003071636.1| DNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111338|gb|EER29491.1| DNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|320035278|gb|EFW17220.1| RNA polymerase [Coccidioides posadasii str. Silveira]
Length = 382
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 21/165 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL-TSDEVVDRILYSR------DCTCVDFCSEC 53
+AI++V + N++VL DE ++ R+GL+PL S E ++ + + R +
Sbjct: 90 LAIEFVFIHNNTSVLHDEVLSHRLGLVPLKGSLEGINWMSWFRMPKEGEPDSGSPASDSN 149
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-- 102
++ L+V+C DD T+ A + + D PV R +G
Sbjct: 150 TIVLKLNVECTKNQNARPDEDDPTKLYNNAHVYAKDIVFEPV-GRQAAIFSGPHGVIQPA 208
Query: 103 --DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DIL+ KLR GQ++ + + KG G++HAK++P A + PD
Sbjct: 209 YPDILLAKLRPGQKIDIEMHCIKGIGQDHAKFSPVATASYRLLPD 253
>gi|440293650|gb|ELP86743.1| DNA-directed RNA polymerase I and III subunit RPAC1, putative
[Entamoeba invadens IP1]
Length = 289
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 78/148 (52%), Gaps = 10/148 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V +E N++ + DE +A R+GLIP+ +D + ++ + ++ E ++ F +D
Sbjct: 43 MAIEMVVMEVNTSCIPDEMLAHRLGLIPIYADP--RKFQFAPNRAFLEPTEENTLVFHMD 100
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPV----TSRNRDADMNEYGETDDILIVKLRKGQELR 116
V + + + ++ S+D P T+ +D G DILI +L +GQ+++
Sbjct: 101 V-INNTKDKTAVHKNVYSSDIIWEPQGDQETTFQKDPIRVVLG---DILIAELAQGQQIK 156
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
+ Y KG G++HAK++P + P
Sbjct: 157 CKLYCCKGLGQDHAKFSPVCTAAYRMMP 184
>gi|116754910|ref|YP_844028.1| RNA polymerase, insert [Methanosaeta thermophila PT]
gi|116666361|gb|ABK15388.1| DNA-directed RNA polymerase, subunit D [Methanosaeta thermophila
PT]
Length = 264
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 103/247 (41%), Gaps = 51/247 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSR--DCTCVDF-CSECSVEF 57
+AID + + N++VL DE IA R+GL+P+ +D D +YS +C C C C ++F
Sbjct: 39 LAIDEISIYENTSVLFDEQIALRLGLVPIRAD---DLSVYSTPDECQCGGIGCPGCRIDF 95
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
L + V + D+K +D V D+I +V L +G++L +
Sbjct: 96 MLTA----EGPATVHSRDIKFSDPSV--------------RAAFDNIPLVVLGEGEKLVI 137
Query: 118 RAYAKKGFGKEHAKWNP------------------TAGVCFEYDPDNSMRHTLFPKPDEW 159
+A GKEHAKW G C + P + + + D
Sbjct: 138 EGFATLRTGKEHAKWQAGTLCGYKNLPSIEISGCNNCGRCVKVCPRGVL---VLDENDSI 194
Query: 160 PKSEYSELD------ETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
+ +E E + + + + ++ES G++ +++V M LK+K
Sbjct: 195 KVRDITECSLCRLCVEECDQRAISVVPLEDAFIMSIESDGSINAKDLVRMAAEELKKKAL 254
Query: 214 NLQTQLA 220
LQ LA
Sbjct: 255 ALQDTLA 261
>gi|212530122|ref|XP_002145218.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces marneffei ATCC 18224]
gi|210074616|gb|EEA28703.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces marneffei ATCC 18224]
Length = 373
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 21/164 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSECSVEFT- 58
+AI++V + N++V+ DE +ASR+GLIPL S E ++ + + + T D S +F
Sbjct: 90 LAIEFVYILNNTSVIQDEVLASRLGLIPLKGSIEGLNWMQWFKKATEEDPSSSEPSDFNT 149
Query: 59 ----LDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD--- 102
L+++C +D A + ++D P ++ + GE
Sbjct: 150 VVLNLNIECTVNEKAPPGEEDPRIRYHNAHVYASDITFDP--KGRQEHYFSGEGEIKPVN 207
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DILI KLR GQ + L + KG G +HAK++P A + P+
Sbjct: 208 PDILIAKLRPGQVIELEMHCIKGIGADHAKFSPVATATYRLLPE 251
>gi|433590977|ref|YP_007280473.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Natrinema
pellirubrum DSM 15624]
gi|448334510|ref|ZP_21523685.1| DNA-directed RNA polymerase subunit D [Natrinema pellirubrum DSM
15624]
gi|448385452|ref|ZP_21563958.1| DNA-directed RNA polymerase subunit D [Haloterrigena thermotolerans
DSM 11522]
gi|433305757|gb|AGB31569.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Natrinema
pellirubrum DSM 15624]
gi|445619842|gb|ELY73359.1| DNA-directed RNA polymerase subunit D [Natrinema pellirubrum DSM
15624]
gi|445656947|gb|ELZ09779.1| DNA-directed RNA polymerase subunit D [Haloterrigena thermotolerans
DSM 11522]
Length = 249
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 95/232 (40%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ V +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRMGLVPLTTPPV------------GEFAEDDTVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ D + DL S D V P AD N + I+ L+ GQ L A
Sbjct: 91 VEGPD----TAYSGDLVSEDDLVQP-------ADEN-------VPIIDLKDGQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWPKSEYS 165
A GK+HAK V FE + +R + + P SE+
Sbjct: 133 AVIDRGKDHAKHQGGVAVGYRHLQRVEVEGDLPEFEDEERRIIRGVIEDDGELVPTSEFD 192
Query: 166 -ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+L E P + F+VE+ G+ E +V L+ + + L+
Sbjct: 193 HDLSNRYPGKEVRVEDVPEAFVFHVETDGSFSIEELVTRAADTLEARATELE 244
>gi|397772870|ref|YP_006540416.1| DNA-directed RNA polymerase [Natrinema sp. J7-2]
gi|448340555|ref|ZP_21529526.1| DNA-directed RNA polymerase subunit D [Natrinema gari JCM 14663]
gi|397681963|gb|AFO56340.1| DNA-directed RNA polymerase [Natrinema sp. J7-2]
gi|445629988|gb|ELY83258.1| DNA-directed RNA polymerase subunit D [Natrinema gari JCM 14663]
Length = 249
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 96/232 (41%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ V +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLTTPPV------------GEFGEDETVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V P AD N + I++L+ GQ L A
Sbjct: 91 VEG----PATAYSGDLVSSDELVKP-------ADEN-------VPIIELKDGQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK---------SEYSELDETQ 171
A GK+HAK V + + + L DE + E E
Sbjct: 133 AVIDRGKDHAKHQGGVAVGYRHLQRVEVEGDLPEFEDEESRIIRGVIEDDGELVSTSEFD 192
Query: 172 HEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
H+ + K PN + F+VE+ G+ E +V + ++ + L+
Sbjct: 193 HDLSNRYPGKEVRIEDVPNAFVFHVETDGSFPIEELVTRAADTIAERATELE 244
>gi|367019632|ref|XP_003659101.1| hypothetical protein MYCTH_62866 [Myceliophthora thermophila ATCC
42464]
gi|347006368|gb|AEO53856.1| hypothetical protein MYCTH_62866 [Myceliophthora thermophila ATCC
42464]
Length = 374
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 18/162 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL--YSR--DCTCVD--FCSEC 53
+AI+ V + N++V+ DE +A R+GLIP + + + L + R D + V+ +
Sbjct: 90 LAIETVFVNNNTSVIQDEVLAHRLGLIPFKGGHKGLHKFLKFWRRPDDESQVNNSYYDYN 149
Query: 54 SVEFTLDVKCVD---------DQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGETD 102
+V L+VKC D T+ A + + D PV + + D
Sbjct: 150 TVSLRLEVKCEHNENAAPGETDPTKLYKHAHVYARDIEFCPVGRQTKYFSGDDAIAPVNP 209
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI KLR GQE+ L + KG G +HAK++P A + P
Sbjct: 210 DILIAKLRPGQEISLTMHMHKGVGSDHAKFSPVATASYRLMP 251
>gi|367044228|ref|XP_003652494.1| hypothetical protein THITE_2114056 [Thielavia terrestris NRRL 8126]
gi|346999756|gb|AEO66158.1| hypothetical protein THITE_2114056 [Thielavia terrestris NRRL 8126]
Length = 374
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 125/300 (41%), Gaps = 44/300 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL----YSRDCTCVD--FCSEC 53
+AI+ V + N++V+ DE ++ R+GLIP E + + L D + ++ +
Sbjct: 90 LAIETVFINNNTSVIQDEVLSHRLGLIPFRGGKEGLHKFLKWWRKPADESQINNSYYDFN 149
Query: 54 SVEFTLDVKC---------VDDQTRHVTTADLKSTDARVVPVTSRNR---DADMNEYGET 101
+V L+VKC D T+ A + + D PV + + AD
Sbjct: 150 TVSLRLEVKCEYNEAAAPGETDPTKLYKHAHVYARDIEFCPVGRQEKYFSGADAIA-PVN 208
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE--- 158
DILI KLR GQE+ L + KG G +HAK++P A + P + + + E
Sbjct: 209 PDILIAKLRPGQEISLSMHMHKGVGSDHAKFSPVATASYRLLPIIKIERPILGRDAEKFA 268
Query: 159 --WPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+P T+ EA A+ + E G LK + M TV ++ L + +
Sbjct: 269 RCFPPGVIGLEKVTKKEA-----AQKGSGYEGHE--GELKAVVVDPMRDTVSRECLRHPE 321
Query: 217 TQLAHDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
Q K + + F VES G + + I + V LK+K +L+ Q+
Sbjct: 322 FQ------------GKVKLGRKKDHFIFLVESTGQWESDAIFMEAVAHLKKKARDLEKQV 369
>gi|330921707|ref|XP_003299536.1| hypothetical protein PTT_10544 [Pyrenophora teres f. teres 0-1]
gi|311326761|gb|EFQ92375.1| hypothetical protein PTT_10544 [Pyrenophora teres f. teres 0-1]
Length = 376
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL--YSR----DCTCVDFCSECS 54
+AI+ V + N++++ DE +A R+GLIPL D R + Y++ D + S +
Sbjct: 88 LAIEDVYIYQNTSIIQDEVLAHRLGLIPLCGDRASLRAMKWYAKPTDEDEGSGNPTSCNT 147
Query: 55 VEFTLDVKCV-------------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNE---- 97
V L C D + ++ + D R P + ++ E
Sbjct: 148 VALELKAMCTWQPGGLARAVAGETDPDKLYVGHNVYAKDIRFEPNGDQAQNFSQAEGKHI 207
Query: 98 YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI K+R GQE+ LR +A KG ++HAK++P A + P
Sbjct: 208 RSTNPDILICKMRPGQEINLRMHAIKGISQDHAKFSPVATASYRLMP 254
>gi|389624551|ref|XP_003709929.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Magnaporthe
oryzae 70-15]
gi|351649458|gb|EHA57317.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Magnaporthe
oryzae 70-15]
gi|440471601|gb|ELQ40590.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Magnaporthe
oryzae Y34]
gi|440481959|gb|ELQ62489.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Magnaporthe
oryzae P131]
Length = 373
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 22/163 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL-TSDEVVDRIL--YSRDCT-----CVDFCSE 52
+AI+ V + N++V+ DE +A R+GL+PL S E + + + + R T DF +
Sbjct: 91 LAIERVFITNNTSVIQDEVLAQRLGLVPLKGSKEGLRKFMKPFKRTETGGFDNSFDFNT- 149
Query: 53 CSVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGET 101
V L+VKC +D + ++ ++D VP + D
Sbjct: 150 --VNLRLNVKCTRNPDAKPGENDPNKAYIKPNVYASDIEFVPAGQQTDYFSGDGAIVPVN 207
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI KLR GQ + L +A G+G +HAK++P + P
Sbjct: 208 PDILIAKLRPGQGIDLEMHAHIGYGWDHAKFSPVCTASYRLMP 250
>gi|15790216|ref|NP_280040.1| DNA-directed RNA polymerase II [Halobacterium sp. NRC-1]
gi|169235945|ref|YP_001689145.1| DNA-directed RNA polymerase subunit D [Halobacterium salinarum R1]
gi|13124517|sp|Q9HQJ4.1|RPOD_HALSA RecName: Full=DNA-directed RNA polymerase subunit D
gi|229564264|sp|B0R4Y2.1|RPOD_HALS3 RecName: Full=DNA-directed RNA polymerase subunit D
gi|10580674|gb|AAG19520.1| DNA-directed RNA polymerase II [Halobacterium sp. NRC-1]
gi|167727011|emb|CAP13797.1| DNA-directed RNA polymerase subunit D [Halobacterium salinarum R1]
Length = 248
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 95/232 (40%), Gaps = 48/232 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
++ID V+ NS+V+ DE + R+GL+PLT+ E D+ + +V LD
Sbjct: 44 LSIDTVRFVENSSVMFDEQLGLRLGLVPLTTPE--------------DYAAGEAVTLALD 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S D V AD N I I++L+ Q L L A
Sbjct: 90 VEG----PGTAYSGDLVSNDPEV-------EAADEN-------IPIIELKDDQRLELEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVCFEY--------------DPDNSMRHTLFPKPDEW-PKSEYS 165
A G G++HAK V + + D D M + + DE P ++
Sbjct: 132 AVMGHGRDHAKHQGGVAVGYRHLQRVHVVGDSPEYADDDPQMLRGVIEEDDELVPTDDFD 191
Query: 166 ELDETQHEAP-YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
T++ E + F+VES G++ E +V+ V L + L+
Sbjct: 192 NDLTTRYPGKEVEIEDVDGAFVFHVESDGSMPVEELVLRAVDTLVDRADELE 243
>gi|448346280|ref|ZP_21535166.1| DNA-directed RNA polymerase subunit D [Natrinema altunense JCM
12890]
gi|445632869|gb|ELY86075.1| DNA-directed RNA polymerase subunit D [Natrinema altunense JCM
12890]
Length = 249
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 96/232 (41%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ V +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLTTPPV------------GEFGEDETVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V P AD N + I++L+ GQ L A
Sbjct: 91 VEG----PATAYSGDLVSSDDLVEP-------ADEN-------VPIIELKDGQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK---------SEYSELDETQ 171
A GK+HAK V + + + L DE + E E
Sbjct: 133 AVIDRGKDHAKHQGGVAVGYRHLQRVEVEGDLPEFEDEESRIIRGVIEDDGELVSTSEFD 192
Query: 172 HEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
H+ + K PN + F+VE+ G+ E +V + ++ + L+
Sbjct: 193 HDLSNRYPGKEVRIEDVPNAFVFHVETDGSFPIEELVTRAADTIAERATELE 244
>gi|336252152|ref|YP_004595259.1| DNA-directed RNA polymerase subunit D [Halopiger xanaduensis SH-6]
gi|335336141|gb|AEH35380.1| DNA-directed RNA polymerase subunit D [Halopiger xanaduensis SH-6]
Length = 249
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 98/235 (41%), Gaps = 52/235 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS---DEVVDRILYSRDCTCVDFCSECSVEF 57
MAID V+ NS+V+ DE +A R+GL+PLT+ DE F + +V
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLTTPPEDE---------------FGEDATVTL 87
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
++DV+ + DL+S+D V P AD N + I++L+ Q L
Sbjct: 88 SIDVEG----PATAYSGDLESSDELVQP-------ADEN-------VPIIELKDDQRLEA 129
Query: 118 RAYAKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWPKS 162
A A GK+HAK V FE +R + + P S
Sbjct: 130 EADAVLDRGKDHAKHQGAVAVGYRHLQRVVVEDDLPEFEESEAQIVRGVVEDDGELVPTS 189
Query: 163 EYS-ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
E+ +L + + E PN + F+VE+ G+ E +V ++ + + L+
Sbjct: 190 EFDHDLSNRYPDKQVSVEDVPNAFVFHVETDGSFTVEELVTRAAETIESRATELE 244
>gi|448400361|ref|ZP_21571353.1| DNA-directed RNA polymerase subunit D [Haloterrigena limicola JCM
13563]
gi|445667384|gb|ELZ20027.1| DNA-directed RNA polymerase subunit D [Haloterrigena limicola JCM
13563]
Length = 249
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 95/232 (40%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ V +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLTTPPV------------GEFTEDDTVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V P AD N I I++L+ Q L A
Sbjct: 91 VEG----PATAYSGDLVSSDELVQP-------ADEN-------IPIIELKDDQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWPKSEYS 165
A GK+HAK V FE +R + + P SE+
Sbjct: 133 AVLDRGKDHAKHQGGVAVGYRHLQRVEVDGDLPEFEEQESRIIRGVIEDDGELVPTSEFD 192
Query: 166 -ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+L + E PN + F+VE+ G+ E +V + + + L+
Sbjct: 193 HDLSNRYPDKQVRVEDVPNAFVFHVETDGSFTVEELVTRAAETIAMRATELE 244
>gi|145349074|ref|XP_001418965.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579195|gb|ABO97258.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 360
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 120/302 (39%), Gaps = 54/302 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V++DE A R+GL+P+ +D + D ++ +
Sbjct: 87 MAIEKVFVVNNTSVVADEVFAHRLGLVPIKADPAMFEYRGEGDAAN----ETNTIVLKMH 142
Query: 61 VKC-----VDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE--------------- 100
V+C D V + S P S+ + + +Y +
Sbjct: 143 VRCHKERNPDGTLGEVVNRSVYSNALTWCPEGSQLPEENGAKYSDFKRSQKEVVGDQELG 202
Query: 101 --TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF-PKPD 157
DDIL+VKL GQE+ L + KG G+EHAKW+P ++ P+ ++ + D
Sbjct: 203 CVHDDILLVKLAPGQEVELECHCVKGIGQEHAKWSPVGTCWYKMVPEITILEPITGADAD 262
Query: 158 EWPK--SEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
E+ K + +SE + Y E K +K V + G +++ L
Sbjct: 263 EFMKKCANFSETHKC-----YACEGKGDKKTVKV----------VESRGCDFCVERVREL 307
Query: 216 QTQLA-HDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT 274
+ D++ + + + F +E+ G + P I V +L K N+ +
Sbjct: 308 TGEPGWADKIAV---------RKRKDHFIFTIETIGQMAPGTIFKEAVKILASKAQNVLS 358
Query: 275 QL 276
L
Sbjct: 359 TL 360
>gi|315425723|dbj|BAJ47379.1| DNA-directed RNA polymerase subunit D [Candidatus Caldiarchaeum
subterraneum]
gi|343484524|dbj|BAJ50178.1| DNA-directed RNA polymerase subunit D [Candidatus Caldiarchaeum
subterraneum]
Length = 215
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 60/223 (26%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFT 58
MA++ + + NS+ +++E +A RI LIP +D +D + +C+C C +C V F
Sbjct: 37 MAVEEILVIENSSPMTNEVLAHRISLIPFITD--LDNFNVAEECSCQSRLGCEKCVVRFV 94
Query: 59 LDVKCVDDQTRHVTTADLKST--DARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
L + D Q V + D+K D +V P +I IV L Q++
Sbjct: 95 LRAEAAD-QPVTVYSRDIKPERHDTKVAPFDG--------------NIPIVVLAPRQKIE 139
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPY 176
L Y + G G++HAKW +G+ Y +NS
Sbjct: 140 LELYVRLGRGRKHAKWQ--SGIATLYQ-ENS----------------------------- 167
Query: 177 NWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++ VES G L P +V+ ++K ++ + L
Sbjct: 168 -------RWLLYVESYGFLPPRRMVLEAARIVKTRIEEIGAGL 203
>gi|448337141|ref|ZP_21526223.1| DNA-directed RNA polymerase subunit D [Natrinema pallidum DSM 3751]
gi|445626487|gb|ELY79830.1| DNA-directed RNA polymerase subunit D [Natrinema pallidum DSM 3751]
Length = 249
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 96/232 (41%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ V +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLTTPPV------------GEFGEDETVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V P AD N + I++L+ GQ L A
Sbjct: 91 VEG----PATAYSGDLVSSDDLVQP-------ADEN-------VPIIELKDGQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK---------SEYSELDETQ 171
A GK+HAK V + + + L DE + E E
Sbjct: 133 AVIDRGKDHAKHQGGVAVGYRHLQRVEVEGDLPEFEDEERRIIRGVIEDDGELVSTSEFD 192
Query: 172 HEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
H+ + K PN + F+VE+ G+ E +V + ++ + L+
Sbjct: 193 HDLSNRYPGKEVRIEDVPNAFVFHVETDGSFPIEELVTRAADTIAERATELE 244
>gi|448298705|ref|ZP_21488732.1| DNA-directed RNA polymerase subunit D [Natronorubrum tibetense
GA33]
gi|445591007|gb|ELY45218.1| DNA-directed RNA polymerase subunit D [Natronorubrum tibetense
GA33]
Length = 249
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 95/232 (40%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLTT------------PPEGEFVEDDTVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V P AD D++ I++L+ GQ L A
Sbjct: 91 VEG----PATAYSGDLVSSDDLVQP-------AD-------DNVPIIELKDGQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWPKSEYS 165
A GK HAK V FE +R + + P SE+
Sbjct: 133 AVLERGKNHAKHQGGVAVGYRHLQRVSVVDDLPEFEEQESQIVRGVIEDDGELVPTSEFD 192
Query: 166 -ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+L E PN + F VE+ G+ E +V V ++ + + L+
Sbjct: 193 HDLSNRYPGKQVEVEDVPNAFVFRVETDGSFTVEELVTRAVDSIEARATELE 244
>gi|150401521|ref|YP_001325287.1| RNA polymerase insert [Methanococcus aeolicus Nankai-3]
gi|150014224|gb|ABR56675.1| RNA polymerase insert [Methanococcus aeolicus Nankai-3]
Length = 197
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 89/236 (37%), Gaps = 88/236 (37%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLT-----SDEVVD-RILYSRDCTCVDFCSECSV 55
AI+ V NS+ + DE +A R+ LIP+T SDEVV I+ CT
Sbjct: 43 AIENVYFYENSSSMYDEILAHRLALIPITGKPVISDEVVRFSIMKEGPCT---------- 92
Query: 56 EFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQEL 115
V +ADL+S +V D+I IVKL++GQ+L
Sbjct: 93 ---------------VYSADLESESDSMVAF---------------DNIPIVKLKEGQKL 122
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAP 175
L A G GK HAKW P A
Sbjct: 123 ELECEALVGVGKNHAKWQPC-------------------------------------NAS 145
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEA 231
Y K N+ F+VES G + E+I+I + VLK K +L Y IN+A
Sbjct: 146 YKL-IKDNEVEFSVESHGQMDSEDILISAIEVLKNKAEKFLYELES----YEINKA 196
>gi|396080763|gb|AFN82384.1| RNA polymerase I and III subunit AC40 [Encephalitozoon romaleae
SJ-2008]
Length = 305
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 21/148 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD----EVVDRILYSRDCTCVDFCSECSVE 56
MA+ V L+ N +V DEFIA R+GLIPL +D E V++ L R+ S+
Sbjct: 68 MAVKDVFLKENESVFPDEFIAHRLGLIPLEADPEMFEFVEKELNERN----------SLR 117
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
F L+V ++++ V ++ S D + +P + R+A N +L+ KL +GQ++
Sbjct: 118 FVLNVT---NESKDVM--NVYSDDIKWIPFGGQ-REALRNAKF-CSGVLMFKLARGQKIN 170
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
K G+ HAKW+P + P
Sbjct: 171 AELVCTKNIGRVHAKWSPVCPATYRLMP 198
>gi|449461051|ref|XP_004148257.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cucumis sativus]
gi|449522768|ref|XP_004168398.1| PREDICTED: DNA-directed RNA polymerases I and III subunit
RPAC1-like [Cucumis sativus]
Length = 391
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVV----DRILYSRDCTCV----DFCSE 52
MAI+ V N++++ DE +A R+GL+P+ D + D+ + + T V C
Sbjct: 125 MAIEKVLFANNTSIVQDEVLAHRLGLVPIRVDPRLFKYSDKDAPNENNTIVFRLHACCER 184
Query: 53 CSVEFTLDVKC------------VDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE 100
T+ K V D++ V+ + K+ + + +++ N G
Sbjct: 185 GKPRLTVTSKALTWLPNGSEFPLVSDKS--VSNSKPKTYTSFSCSQNTLSKEFSNNPIGP 242
Query: 101 TD-DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
D DI++ +L GQE+ L A+A KG GK HAKW+P A + P+
Sbjct: 243 KDSDIILARLGPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPE 288
>gi|399218932|emb|CCF75819.1| unnamed protein product [Babesia microti strain RI]
Length = 318
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 104/255 (40%), Gaps = 48/255 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC-SVEFTL 59
+AI+ V + N+ ++ D+ +A R+ L+P D + I Y + S C ++
Sbjct: 74 LAIETVMVWQNTGLIHDDVLAHRLALVPFNVDP--EEINYRGHENLNESNSVCFELKVAH 131
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET------DDILIVKLRKGQ 113
D C++ + + V T+ LK +P+ D G+ +DIL+ KL GQ
Sbjct: 132 DANCIE-KYQSVYTSQLKW-----IPLG----DEQHKRLGKNQPRPLFEDILLTKLAPGQ 181
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHE 173
++ L+AY +KG G+ HAKW+ + + + P T + + E EL T
Sbjct: 182 QIELKAYLEKGIGRTHAKWSIVSSATYRFYPHIGSHSTYSDISSQLTRDESKELVATCPM 241
Query: 174 APYNWEAK-----------------------------PNKYFFNVESAGALKPENIVIMG 204
+ + K N + F++E+ G + + +
Sbjct: 242 NVFALDHKGNVIVEDPLKCTSCRACIERFKQVTITKVTNHFIFSIETCGPISSWDAFVKS 301
Query: 205 VTVLKQKLSNLQTQL 219
V +LK K L+ +L
Sbjct: 302 VNILKNKGDKLKCKL 316
>gi|402469296|gb|EJW04273.1| hypothetical protein EDEG_01455 [Edhazardia aedis USNM 41457]
Length = 313
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 10/144 (6%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI++V + V+ +E +A R+GL+P+ D V S D + +++F L
Sbjct: 65 MAIEYVNFYKYNGVIPEEILAHRLGLLPILIDPKVFEYKNSTDTEN----EKNALKFVLK 120
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + VT+ D+K VP+ ++ +D + I I K+ GQE+ + Y
Sbjct: 121 KQNNMNDIVVVTSDDIKW-----VPLGNQ-KDTLVPRPRIKSGIPITKICNGQEIEIEMY 174
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDP 144
A KG GK+HAKW+P V + P
Sbjct: 175 AIKGIGKDHAKWSPVCPVSYRLHP 198
>gi|406694412|gb|EKC97739.1| hypothetical protein A1Q2_07938 [Trichosporon asahii var. asahii
CBS 8904]
Length = 278
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 31/153 (20%)
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK 161
DDIL+VKLR GQ + L +A+KG G +HAK++P A + P +R + + E K
Sbjct: 124 DDILLVKLRPGQMVDLHCFARKGVGADHAKYSPVATASYRLLPHIILREPIPLEDQEKFK 183
Query: 162 SEYSE-LDETQHEAPYNWEA---KPNK-------------------------YFFNVESA 192
S ++ + E + +A N + P K + FNVESA
Sbjct: 184 SCFAPGVIELEKDADGNQQVVVKNPRKDTASREVLRHKEFQDKVELARIRDHFIFNVESA 243
Query: 193 GALKPENIVIMGVTVLKQKLSNLQTQLAHDRVF 225
G PE +V + ++ K+S ++ L D++F
Sbjct: 244 GQYPPEELVPEAIKIMLSKISAVEAGL--DKLF 274
>gi|302693813|ref|XP_003036585.1| hypothetical protein SCHCODRAFT_45907 [Schizophyllum commune H4-8]
gi|300110282|gb|EFJ01683.1| hypothetical protein SCHCODRAFT_45907 [Schizophyllum commune H4-8]
Length = 354
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 121/280 (43%), Gaps = 35/280 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT--SDEVVDR--ILYSRDCTCVDFCSECSVE 56
+AI+ V + N++V+ DE +A R+GL+PL D++ R I RD D C+ +
Sbjct: 82 IAIENVYVWDNTSVIVDEVLAHRLGLVPLNVDPDQMQPRKDIPTDRDTIIFDLAVACTRK 141
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIVKLRKGQEL 115
+ + + ++ S+ + PV + A+ +I++ KLR GQ +
Sbjct: 142 SHSSANATEPEDLY-DNHEVLSSHLKWRPVGEQEEVFANKPPAPTNPNIVLAKLRPGQAV 200
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAP 175
+ +A KG GK+HAK++P A + P ++ + P+ + + +S P
Sbjct: 201 HMELHAVKGVGKDHAKFSPVATASYRLLPHIKIKKPIPPELADKFQKCFS---------P 251
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNW 235
PN +V+ P+N+ V+ + Q + RV
Sbjct: 252 GVIRVDPNTKAVSVD------PKNVRRDTVSREVLRHPEFQDSVELSRVR---------- 295
Query: 236 EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 275
+ + F+VES A PE ++ + +L++K+ ++ +
Sbjct: 296 ----DHFLFSVESESAYAPEWLLAESIKILREKVKEVKAE 331
>gi|406866169|gb|EKD19209.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 379
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 20/185 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS--DEVVDRILY------SRDCTCVDFCSE 52
+AI+ V + N++++ DE +A R+GLIPL + ++D + + S + V++
Sbjct: 94 LAIENVYIYNNTSIIQDEVLAHRLGLIPLKGGNEGLLDYLKWLKKPEESSQESPVNY-DY 152
Query: 53 CSVEFTLDVKCVD---------DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD- 102
++ L+V+C D A + + D + P ++++ + ET
Sbjct: 153 NTILLELNVECTKNHDAPKGEKDPLVLYHNAHIYAKDIKFKPFGNQHKYFSGEDAIETTN 212
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK 161
DILI KLR GQ + L +A KG G +HAK++P A + P S+ + K E K
Sbjct: 213 PDILIAKLRPGQCIELEMHAIKGVGSDHAKFSPVATASYRLLPTISILKPILGKDAEKFK 272
Query: 162 SEYSE 166
S + E
Sbjct: 273 SCFPE 277
>gi|55376999|ref|YP_134849.1| DNA-directed RNA polymerase subunit D [Haloarcula marismortui ATCC
43049]
gi|344211110|ref|YP_004795430.1| DNA-directed RNA polymerase subunit D [Haloarcula hispanica ATCC
33960]
gi|448640850|ref|ZP_21677637.1| DNA-directed RNA polymerase subunit D [Haloarcula sinaiiensis ATCC
33800]
gi|448651240|ref|ZP_21680309.1| DNA-directed RNA polymerase subunit D [Haloarcula californiae ATCC
33799]
gi|448667520|ref|ZP_21686020.1| DNA-directed RNA polymerase subunit D [Haloarcula amylolytica JCM
13557]
gi|448678705|ref|ZP_21689712.1| DNA-directed RNA polymerase subunit D [Haloarcula argentinensis DSM
12282]
gi|1350858|sp|Q00813.1|RPOD_HALMA RecName: Full=DNA-directed RNA polymerase subunit D
gi|148773|gb|AAA73212.1| ribosomal protein HmaRp-alpha subunit [Haloarcula marismortui]
gi|55229724|gb|AAV45143.1| DNA-directed RNA polymerase subunit D [Haloarcula marismortui ATCC
43049]
gi|343782465|gb|AEM56442.1| DNA-directed RNA polymerase subunit D [Haloarcula hispanica ATCC
33960]
gi|445761375|gb|EMA12623.1| DNA-directed RNA polymerase subunit D [Haloarcula sinaiiensis ATCC
33800]
gi|445770088|gb|EMA21156.1| DNA-directed RNA polymerase subunit D [Haloarcula amylolytica JCM
13557]
gi|445770767|gb|EMA21825.1| DNA-directed RNA polymerase subunit D [Haloarcula californiae ATCC
33799]
gi|445772692|gb|EMA23737.1| DNA-directed RNA polymerase subunit D [Haloarcula argentinensis DSM
12282]
Length = 259
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 100/243 (41%), Gaps = 58/243 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V++ N++V+ +E I R+GL+PLT+D DF E E TL
Sbjct: 43 FSIDTVRVIENTSVMFNEQIGLRLGLVPLTTD-------------LDDF--EIGDEVTLS 87
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ D ++DL S+D V AD D+I I+ L++GQ L + A
Sbjct: 88 LSV--DGPSTAYSSDLVSSDPMV-------EAAD-------DNIPIIDLKEGQRLEVEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWP----- 160
A G+EHAK V FE D N +R + + E
Sbjct: 132 AVLDTGREHAKHQGGVAVGYRHLQQVEVVGDLGEFEDDDPNILRGVIEEQAAEHAAGDAT 191
Query: 161 KSEYSELDETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
E DE ++ + K PN + F+VE+ G+ E +V+ V L+ + +
Sbjct: 192 NGELVATDEFDNDLRNRYPGKDVEVSDVPNAFVFHVETDGSFTTEELVLRAVETLRDRAT 251
Query: 214 NLQ 216
L+
Sbjct: 252 ELK 254
>gi|336372326|gb|EGO00665.1| hypothetical protein SERLA73DRAFT_178536 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385070|gb|EGO26217.1| hypothetical protein SERLADRAFT_447454 [Serpula lacrymans var.
lacrymans S7.9]
Length = 363
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 113/261 (43%), Gaps = 53/261 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
++++ V + N++V+ DE +A RIGL+PL D + +++ T ++ F L
Sbjct: 90 ISVERVYVWDNTSVVVDEILAQRIGLVPLNVDPA---WMDTKETTNDQATDRNTLVFRLK 146
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMN--EYGE-------------TDDIL 105
V C ++ A STD R + + S + + GE +I+
Sbjct: 147 VACERNKN-----APKGSTDPREMYINSDVLSSHLEWEPQGEQATVFASSPPAPTNPNIV 201
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFE------YDPDNSMRHTLFPKPDEW 159
+ KLR GQE+ + +A KG GK+HAK+ P A + +P+ + L K +
Sbjct: 202 LGKLRPGQEIDIEMHAVKGVGKDHAKFCPVATASYRLLPLVILNPEKPVPPHLAEKFQKC 261
Query: 160 ---------PKSEYSELDE---------------TQHEAPYNWEAKPNKYFFNVESAGAL 195
P+++ LDE + E + + F++ES G
Sbjct: 262 FSPGVIRVDPQTKAISLDEQNMRKESMSREVYRHPEFEGCTQLARVRDHFLFSIESEGFY 321
Query: 196 KPENIVIMGVTVLKQKLSNLQ 216
PE ++ ++V++ K++N++
Sbjct: 322 PPERLLPESISVMRGKIANIR 342
>gi|448314284|ref|ZP_21503984.1| DNA-directed RNA polymerase subunit D [Natronolimnobius
innermongolicus JCM 12255]
gi|445595544|gb|ELY49650.1| DNA-directed RNA polymerase subunit D [Natronolimnobius
innermongolicus JCM 12255]
Length = 249
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 94/232 (40%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLTT------------PPEGEFGEDETVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V P AD N + I++L+ GQ L A
Sbjct: 91 VEG----PATAYSGDLVSSDELVQP-------ADEN-------VPIIELKDGQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWPKSEYS 165
A GK+HAK V FE +R + D P SE+
Sbjct: 133 AVVDRGKDHAKHQGGVAVGYRHLQRVEVVDDLPEFEESEPQIVRGVIEDDGDLVPTSEFD 192
Query: 166 -ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+L E PN + F+VE+ G+ E +V ++ + L+
Sbjct: 193 HDLTNRYPGKQVELEDVPNAFVFHVETDGSFSVEELVARAADSIESRAIELE 244
>gi|448689118|ref|ZP_21694855.1| DNA-directed RNA polymerase subunit D [Haloarcula japonica DSM
6131]
gi|445778988|gb|EMA29930.1| DNA-directed RNA polymerase subunit D [Haloarcula japonica DSM
6131]
Length = 259
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 100/243 (41%), Gaps = 58/243 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V++ N++V+ +E I R+GL+PLT+D DF E E TL
Sbjct: 43 FSIDTVRVIENTSVMFNEQIGLRLGLVPLTTD-------------LDDF--EIGDEVTLS 87
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ D ++DL S+D V AD D+I I+ L++GQ L + A
Sbjct: 88 LSV--DGPATAYSSDLVSSDPMV-------EAAD-------DNIPIIDLKEGQRLEVEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWP----- 160
A G+EHAK V FE D N +R + + E
Sbjct: 132 AVLDTGREHAKHQGGVAVGYRHLQQVEVVGDLGEFEDDDPNILRGVIEEQAAEHAAGDAT 191
Query: 161 KSEYSELDETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
E DE ++ + K PN + F+VE+ G+ E +V+ V L+ + +
Sbjct: 192 NGELVATDEFDNDLRNRYPGKDVEVSDVPNAFVFHVETDGSFTTEELVLRAVETLRDRAT 251
Query: 214 NLQ 216
L+
Sbjct: 252 ELK 254
>gi|399576713|ref|ZP_10770468.1| DNA-directed RNA polymerase, subunit d [Halogranum salarium B-1]
gi|399238157|gb|EJN59086.1| DNA-directed RNA polymerase, subunit d [Halogranum salarium B-1]
Length = 249
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 98/237 (41%), Gaps = 48/237 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
++ID V+ NS+V+ DE IA R+GL+PLT+ + DF V LD
Sbjct: 43 LSIDSVRFVENSSVMFDEMIALRLGLVPLTT-------------SLDDFEEGDEVTLALD 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + D+ S+ V P AD N I I++L++GQ L A
Sbjct: 90 VEG----PATAYSGDMVSSVEYVQP-------ADEN-------IPIIELKEGQHLEFEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPD--NSMRHTLFPKPDEWPKSEYS 165
A GK HAK V + E+D N +R + + E +E
Sbjct: 132 AVLDSGKSHAKHQGGVAVGYRHLQKVEVVGDTPEFDDGEPNILRGVIETEDGELIHTEEF 191
Query: 166 ELDETQHEAPYNWEAK--PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
D TQ E P + F+VE+ G+ E +V+ V L + + L+ +++
Sbjct: 192 GNDLTQQFPGKEVEVSDVPGAFVFHVETDGSFTVEELVLRAVESLGLRAAELEEKVS 248
>gi|448630480|ref|ZP_21673135.1| DNA-directed RNA polymerase subunit D [Haloarcula vallismortis ATCC
29715]
gi|445756403|gb|EMA07778.1| DNA-directed RNA polymerase subunit D [Haloarcula vallismortis ATCC
29715]
Length = 259
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 100/243 (41%), Gaps = 58/243 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V++ N++V+ +E I R+GL+PLT+D DF E E TL
Sbjct: 43 FSIDTVRVIENTSVMFNEQIGLRLGLVPLTTD-------------LDDF--EIGDEVTLS 87
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ D ++DL S+D V AD D+I I+ L++GQ L + A
Sbjct: 88 LSV--DGPATAYSSDLVSSDPMV-------EAAD-------DNIPIIDLKEGQRLEVEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWP----- 160
A G+EHAK V FE D N +R + + E
Sbjct: 132 AVLDTGREHAKHQGGVAVGYRHLQQVEVVGDLGEFEDDDPNILRGVIEEQAAEHAAGDAT 191
Query: 161 KSEYSELDETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
E DE ++ + K PN + F+VE+ G+ E +V+ V L+ + +
Sbjct: 192 NGELVATDEFDNDLRNRYPGKEVEVSDVPNAFVFHVETDGSFTTEELVLRAVETLRDRAT 251
Query: 214 NLQ 216
L+
Sbjct: 252 ELK 254
>gi|284165822|ref|YP_003404101.1| RNA polymerase insert [Haloterrigena turkmenica DSM 5511]
gi|284015477|gb|ADB61428.1| RNA polymerase insert [Haloterrigena turkmenica DSM 5511]
Length = 249
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 96/232 (41%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLTT------------PPEGEFGEDETVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V P AD N + I+ L+ Q L A
Sbjct: 91 VEG----PATAYSGDLVSSDDLVQP-------ADEN-------VPIIDLKDDQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWPKSEYS 165
A +GK+HAK V FE + +R + + P SE+
Sbjct: 133 AVLDYGKDHAKHQGGVAVGYRHLQRVEVVGDLPEFEEEESRIVRGVIEDDGELVPTSEFD 192
Query: 166 -ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+L E PN + F+VE+ G+ E +V ++ + ++L+
Sbjct: 193 HDLSNRYPGKEVEIEDVPNAFVFHVETDGSFSVEELVTRAADSIESRATDLE 244
>gi|424812604|ref|ZP_18237844.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Candidatus Nanosalinarum sp. J07AB56]
gi|339756826|gb|EGQ40409.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Candidatus Nanosalinarum sp. J07AB56]
Length = 188
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 33/131 (25%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA+ +++ N + L DE +A+R+G IPLT E D D T V LD
Sbjct: 39 MAVQQLRVNQNQSGLFDEMLANRVGQIPLTIPEGFDE-----DDTAV---------LALD 84
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ +TR VT DL + + V PV +D IVKL++GQ+L+ A
Sbjct: 85 REG---ETR-VTAEDLSAGNYDVTPV---------------NDTTIVKLKEGQDLKFEAD 125
Query: 121 AKKGFGKEHAK 131
A+ G+G EHAK
Sbjct: 126 AELGYGTEHAK 136
>gi|429965270|gb|ELA47267.1| hypothetical protein VCUG_01263 [Vavraia culicis 'floridensis']
Length = 217
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 22/132 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V + N+T + +E + R+ LIPL + + +CTC C ECSV F+L+
Sbjct: 57 IAIDLVTVHKNTTCIPNEMLVHRLSLIPLP----ITPLKRKEECTCNVSCPECSVTFSLN 112
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V ++ V + L S T+R + LI K+ + Q +++ A
Sbjct: 113 A--VSNEGMTVNASHLFSDAVD----TTRLKG------------LICKMGEKQSVKMTAL 154
Query: 121 AKKGFGKEHAKW 132
A+ G KEHAK+
Sbjct: 155 ARTGVAKEHAKF 166
>gi|299750875|ref|XP_001829899.2| RNA polymerase subunit [Coprinopsis cinerea okayama7#130]
gi|298409112|gb|EAU91821.2| RNA polymerase subunit [Coprinopsis cinerea okayama7#130]
Length = 383
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 26/171 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL-TSDEVVDRILYSRDCTCVDFCSECSVEFTL 59
+AI+ V + N++V+ DE +A RIGL+PL + ++D D T D ++ F L
Sbjct: 123 IAIEHVYVWDNTSVIVDEVLAHRIGLVPLNVNPSIMDSRSPQNDPTDRD-----TLIFKL 177
Query: 60 DVKCV--DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGE-------------TDDI 104
DV C + + T D + V+ +RD + G+ +I
Sbjct: 178 DVTCTRNPNAPKGSTNPDELYINHEVL-----SRDLVWSPVGQQAEVFEGCPPAPINPNI 232
Query: 105 LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPK 155
++ KLR GQ + + +A KG GK+HAK+ P A + P ++ + P+
Sbjct: 233 VLTKLRPGQAVNMELHAVKGVGKDHAKFTPVATASYRLLPHIKIKKPIPPE 283
>gi|448728476|ref|ZP_21710804.1| DNA-directed RNA polymerase subunit D [Halococcus saccharolyticus
DSM 5350]
gi|445796958|gb|EMA47443.1| DNA-directed RNA polymerase subunit D [Halococcus saccharolyticus
DSM 5350]
Length = 248
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 47/232 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+++D V++ NS+V+ DE I R+G++PL+ +F + SV LD
Sbjct: 43 LSVDTVRVVENSSVMFDEQIGHRLGMVPLS-------------APPNEFEPDDSVTLGLD 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V D + DL S+D+ V P D++ I++L++ Q L + A
Sbjct: 90 VSGPD----TAYSGDLVSSDSVVEPA--------------EDNVPIIELKEDQRLEVEAE 131
Query: 121 AKKGFGKEHAKWNPTAGVCFEY---------------DPDNSMRHTLFPKPDEWPKSEY- 164
A GK HAK V + + + N +R + + P E+
Sbjct: 132 AVLDTGKSHAKHQGGVAVGYRHLQKVEVVGDREEFADEEPNILRGVIEEDGELIPTEEFD 191
Query: 165 SELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
++L E PN + F+VE+ G+L E +V V L+ + + L+
Sbjct: 192 NDLTNRYPGKEVTVEDVPNAFVFHVETDGSLTVEELVTAAVDSLETRANELK 243
>gi|388582543|gb|EIM22847.1| RNA polymeras-like protein I subunit hRPA39, partial [Wallemia sebi
CBS 633.66]
Length = 362
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 120/293 (40%), Gaps = 54/293 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A++ V + N++V+ DE +A R+GL+P+ D +R+ + + + ++ FTL
Sbjct: 83 VAVENVFVFNNTSVMHDEVMAHRLGLVPILFD--AERLEEFQKGDSPN--DQNTIVFTLQ 138
Query: 61 VKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRD---ADMNEYGETDDILIVK 108
V C D + + S D + VP + D D +ILI K
Sbjct: 139 VACTRKAKVAAGETDPDKIYENHKVYSKDFKWVPQGGQASDPLFTDNPPRVAYPEILITK 198
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSEL- 167
LR GQ + L + KG G++HAK++P A + P + + KSE++EL
Sbjct: 199 LRPGQSIDLELHCVKGLGQDHAKFSPAATASYRLLPTVKLHQPI--------KSEHAELF 250
Query: 168 ----DETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDR 223
E E N + + ++ N + VL+ + +L R
Sbjct: 251 ASCFSEGVVEVRENKKGEKEAHYVNPRKDTVSR---------EVLRHPEFDGVVELGRIR 301
Query: 224 VFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ + FN+E+ GA+K +++ V+K K+ ++ L
Sbjct: 302 ----------------DHFIFNIETTGAVKSVDMLPRSCNVIKSKVQKIREGL 338
>gi|242819534|ref|XP_002487338.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces stipitatus ATCC 10500]
gi|218713803|gb|EED13227.1| DNA-directed RNA polymerase I and III subunit Rpc40, putative
[Talaromyces stipitatus ATCC 10500]
Length = 373
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 129/294 (43%), Gaps = 33/294 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVD-FCSECS---- 54
+A+++V + N++V+ DE +ASR+GLIPL S E ++ + + + T D SE S
Sbjct: 90 LAVEYVYIINNTSVIQDEVLASRLGLIPLKGSIEGLNWMQWFKKPTEEDPKGSEPSDFNT 149
Query: 55 VEFTLDVKCVDDQTRHVTTAD--LKSTDARVVP--VTSRNRDADMNEY---GETD----D 103
V L+V+C ++ D ++ +A + +T + N + GE D
Sbjct: 150 VVLRLNVECSVNEKAPPGAEDPRIRYHNAHIYARDITFHPQGRQTNYFTGDGEIQPVNPD 209
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD-NSMRHTLFPKPDEWPKS 162
ILI KLR GQ + L + KG G +HAK++P A + P+ +R + ++ K
Sbjct: 210 ILIAKLRPGQVIELEMHCVKGIGADHAKFSPVATATYRLLPEIRILRPIIGEDAKKFAKC 269
Query: 163 EYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
+ + P K + Y G + V+ V K +S + L HD
Sbjct: 270 FPKGVIGFEKITPAEAAQKGSGY------EGHTGEDKAVV--VDPFKDTVS--RECLRHD 319
Query: 223 RVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ + + FN+ES G + + + VTVLK K L+ +L
Sbjct: 320 EFKDKVKLGRVR-----DHFIFNIESTGQFPSDTLFLESVTVLKLKCLRLKREL 368
>gi|154335916|ref|XP_001564194.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134061228|emb|CAM38250.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 446
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 71/181 (39%), Gaps = 32/181 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV-VDRILYSRDCTCVDFCSECSVEFTL 59
+A D V +E N + + DE ++ R+GLIP+ + + I S + + + F L
Sbjct: 149 LAFDRVLIEENDSPVLDELLSHRLGLIPVAGPVMKMQYITESNQASFTNLDPSRILLFEL 208
Query: 60 DVKCVDD------------------QTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET 101
D D Q + DAR R DA E+
Sbjct: 209 DAMGAKDAAVTPVYSHQLQWVPLPGQEKKGGAKVGAGADAREA---ERGGDAGAAEFNTD 265
Query: 102 DD----------ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT 151
DD IL+ KL GQ ++L+A A KGFG HAKW P + +E +R
Sbjct: 266 DDDDAVFLVHPDILLTKLGPGQRIKLKAIAVKGFGAVHAKWCPVSACYYEMKTSVELRER 325
Query: 152 L 152
L
Sbjct: 326 L 326
>gi|408400667|gb|EKJ79744.1| hypothetical protein FPSE_00024 [Fusarium pseudograminearum CS3096]
Length = 381
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 20/163 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL--YSRDCTCVDFCSEC---- 53
+AI+ V +E N++V+ DE +A R+GLIP E + L + + D + C
Sbjct: 97 LAIENVYIENNTSVIQDEVLAHRLGLIPFKGGREGLHNFLKWHKKPEAGDDPYAGCFDWN 156
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRD--ADMNEYGETD 102
+V L+V C +D + A + + D VP T R + + N T+
Sbjct: 157 TVRLELNVTCTVNEEASPAENDPLKAYHNAHVYARDIVFVP-TGRQAEYFSGENAIAPTN 215
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI KLR Q + L + KG G +HAK++P A + P
Sbjct: 216 PDILIAKLRPRQTINLAMHMHKGIGSDHAKFSPVATASYRLLP 258
>gi|391342311|ref|XP_003745464.1| PREDICTED: uncharacterized protein LOC100901074 [Metaseiulus
occidentalis]
Length = 684
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 14/154 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA D + L N++ + D+ + +RIGL+P+ VD L+ S+ +V F L
Sbjct: 418 MAADRITLINNTSFIHDKDLTNRIGLVPIR----VDSRLFENRNPEQPASSQDTVVFELH 473
Query: 61 VKCVDD-QTRHVTT--------ADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLR 110
++C + Q +T + + S VP+ + N DDILI KLR
Sbjct: 474 IRCTKNLQAAQDSTLPKDIYSNSSVYSGHLTWVPLEGQEMLFAKNPPKPIHDDILIAKLR 533
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
GQE+ ++ KG GK HAK++P A + P
Sbjct: 534 PGQEIDMKIEYLKGIGKTHAKFSPVATASYRLLP 567
>gi|310800375|gb|EFQ35268.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Glomerella graminicola M1.001]
Length = 372
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL--YSR----DCTCVDFCSEC 53
+AI+ V +E N++V+ DE +A R+GLIP T + E + + L Y + D+ +
Sbjct: 91 IAIENVYIENNTSVIQDEVLAHRLGLIPFTGNPEGIHKFLKWYRKPEHGGKGSFDYNT-- 148
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYG---ET 101
V+ L V+C D + + + + D VP T R + E
Sbjct: 149 -VQLRLRVECTRNPDAAPGETDPNKAFLNSSVYAKDIEFVP-TGRQLEFFSGEDAIRPVN 206
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DIL+ KLR GQ + L + KG G +HAK++P A + P
Sbjct: 207 PDILVAKLRPGQCIELDMHMHKGIGADHAKFSPVATASYRLMP 249
>gi|380478357|emb|CCF43643.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Colletotrichum higginsianum]
Length = 372
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL--YSR----DCTCVDFCSEC 53
+AI+ V +E N++V+ DE +A R+GLIP T + E + + L Y + D+ +
Sbjct: 91 IAIENVYIENNTSVIQDEVLAHRLGLIPFTGNPEGIHKFLKWYRKPEQGGKGSFDYNT-- 148
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYG---ET 101
V+ L ++C D + A + + D VP T R + E
Sbjct: 149 -VQLRLRIECTRNSDAAPGETDPDKAFHNASVYAKDIEFVP-TGRQLEFFSGEDAIRPVN 206
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DIL+ KLR GQ + L + KG G +HAK++P A + P
Sbjct: 207 PDILVAKLRPGQCIELDMHMHKGIGADHAKFSPVATASYRLMP 249
>gi|85690991|ref|XP_965895.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi GB-M1]
gi|19068462|emb|CAD24930.1| DNA-DIRECTED RNA POLYMERASE I [Encephalitozoon cuniculi GB-M1]
gi|449329785|gb|AGE96054.1| DNA-directed RNA polymerase I [Encephalitozoon cuniculi]
Length = 305
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 27/151 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD----EVVDRILYSRDCTCVDFCSECSVE 56
MA+ + L+ N +V DEFIA R+GL+PL D E L R+ S+
Sbjct: 68 MAVRDIFLKENESVFPDEFIAHRLGLVPLEVDPEMFEFAGEELDERN----------SLR 117
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRN---RDADMNEYGETDDILIVKLRKGQ 113
FTLDV+ + +V S D R PV S+ RD + +L+ +L +GQ
Sbjct: 118 FTLDVRNESEGVLNVY-----SDDIRWNPVGSQREIFRDVKF-----SSRVLMFRLARGQ 167
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
++ K GK HAKW+P + P
Sbjct: 168 KISAELVCTKNVGKVHAKWSPVCPATYRLMP 198
>gi|448565309|ref|ZP_21636176.1| DNA-directed RNA polymerase subunit D [Haloferax prahovense DSM
18310]
gi|445715053|gb|ELZ66809.1| DNA-directed RNA polymerase subunit D [Haloferax prahovense DSM
18310]
Length = 259
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 58/247 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V+ N++V+ DE I R+GL+PLT+ DF +V L+
Sbjct: 43 FSIDTVRFVENTSVMFDEMIGLRLGLVPLTT-------------PLGDFEPGDTVTVALE 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V D + D++S D VVP AD N I I++L++GQ L A
Sbjct: 90 V----DGPATAYSGDIESADDMVVP-------ADEN-------IPIIELKEGQRLEFEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPD--NSMRHTLFPKPDEWPKSEYS 165
A G+GK+HAK V + E+D N +R + E + +
Sbjct: 132 AVLGYGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFDEQEPNILRGVIEEAAAEHAEGDAE 191
Query: 166 ELDETQHEAPYN-----WEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
+ D E N + K P + F+VE+ G+ + +V V L + +
Sbjct: 192 DGDLVATETFGNDLTERYPGKEVEVHDVPGAFVFSVETDGSFDVDELVTRAVASLGDRAA 251
Query: 214 NLQTQLA 220
L+ ++A
Sbjct: 252 ELEEKVA 258
>gi|448727623|ref|ZP_21709972.1| DNA-directed RNA polymerase subunit D [Halococcus morrhuae DSM
1307]
gi|445789609|gb|EMA40288.1| DNA-directed RNA polymerase subunit D [Halococcus morrhuae DSM
1307]
Length = 248
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 51/233 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS--DEVVDRILYSRDCTCVDFCSECSVEFT 58
++ID V++ NS+V+ DE I R+G++PL + DE F SV
Sbjct: 43 LSIDTVRVVENSSVMFDEQIGHRLGMVPLATPPDE---------------FEMGESVTLG 87
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
LDV D + DL+S D+ V P A+ N + I++L+ Q L +
Sbjct: 88 LDVSGPD----TAYSGDLQSMDSMVEP-------AEQN-------VPIIELKDDQRLEVE 129
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEY---------------DPDNSMRHTLFPKPDEWPKSE 163
A A GK HAK V + + + N +R + + P E
Sbjct: 130 ADAVLDTGKSHAKHQGAVAVGYRHLQTVDVVGDREEFADEEPNILRGVIEDDGELIPTEE 189
Query: 164 Y-SELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
+ ++L E + + PN + F+VE+ G++ E +V+ V L + + L
Sbjct: 190 FDNDLTERYPGKELDVQDVPNAFVFDVETDGSMSVEELVLAAVDSLDARATEL 242
>gi|302923338|ref|XP_003053654.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734595|gb|EEU47941.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 381
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL---YSRDCTCVDFCSEC---- 53
+A++ V +E N++V+ DE +A R+GL+P R Y + D S C
Sbjct: 97 LAVENVYIENNTSVIQDEVLAHRLGLVPFKGGREGLRDFLKWYKKPEPGEDPFSGCFDYN 156
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGETD 102
+V L+V C +D + A + + D VP + D +
Sbjct: 157 TVRLELNVTCTVNPDASPTENDPLKAYNNAHVYARDIVFVPTGRQAEYFDGEDAIAPTNP 216
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI KLR Q + L + KG G +HAK++P A + P
Sbjct: 217 DILIAKLRPRQTINLAMHMHKGIGADHAKFSPVATASYRLLP 258
>gi|448739234|ref|ZP_21721249.1| DNA-directed RNA polymerase subunit D [Halococcus thailandensis JCM
13552]
gi|445799829|gb|EMA50198.1| DNA-directed RNA polymerase subunit D [Halococcus thailandensis JCM
13552]
Length = 248
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 51/233 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS--DEVVDRILYSRDCTCVDFCSECSVEFT 58
++ID V++ NS+V+ DE I R+G++PL + DE F SV
Sbjct: 43 LSIDTVRVVENSSVMFDEQIGHRLGMVPLAAPPDE---------------FEMGESVTLG 87
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
LDV D + DL+S D+ V P A+ N + I++L+ Q L +
Sbjct: 88 LDVSGPD----TAYSGDLQSMDSMVEP-------AEQN-------VPIIELKDDQRLEIE 129
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEY---------------DPDNSMRHTLFPKPDEWPKSE 163
A A GK HAK V + + + N +R + + P E
Sbjct: 130 ADAVLDTGKSHAKHQGGVAVGYRHLQTVDVVGDREEFADEEPNILRGVIEDDGELIPTEE 189
Query: 164 Y-SELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
+ ++L E + + PN + F+VE+ G++ E +V+ V L + + L
Sbjct: 190 FDNDLTERYPGKELDVQDVPNAFVFDVETDGSMSVEELVLAAVDSLDARATEL 242
>gi|448391689|ref|ZP_21566784.1| DNA-directed RNA polymerase subunit D [Haloterrigena salina JCM
13891]
gi|445665101|gb|ELZ17779.1| DNA-directed RNA polymerase subunit D [Haloterrigena salina JCM
13891]
Length = 249
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLTT------------PPEGEFGEDETVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S D V P AD N + I+ L+ Q L A
Sbjct: 91 VEG----PATAYSGDLVSNDELVQP-------ADQN-------VPIIDLKDDQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPDNS--MRHTLFPKPDEWPKSEYS 165
A +GK+HAK V + E++ + S +R + + P SE+
Sbjct: 133 AVVDYGKDHAKHQGGVAVGYRHLQQVEVVGDLPEFEDEESRIVRGVIEDNGELVPTSEFD 192
Query: 166 -ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+L E PN + F+VE+ G+ E +V ++ + + L+
Sbjct: 193 HDLSNRYPGKEVEVEDVPNAFVFHVETDGSFSVEELVTRAADSIESRATELE 244
>gi|116180930|ref|XP_001220314.1| hypothetical protein CHGG_01093 [Chaetomium globosum CBS 148.51]
gi|88185390|gb|EAQ92858.1| hypothetical protein CHGG_01093 [Chaetomium globosum CBS 148.51]
Length = 374
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 20/177 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRILY----SRDCTCVD--FCSEC 53
+AI+ V + N++V+ DE ++ R+GLIP E + + L D + ++ +
Sbjct: 90 LAIETVFINNNTSVIQDEVLSHRLGLIPFKGGHEGLHKFLKWWRKPTDESEINNSYYDNN 149
Query: 54 SVEFTLDVKCVD---------DQTRHVTTADLKSTDARVVPVTSRNR---DADMNEYGET 101
+V L+V+C D T+ A + + D PV +++ AD
Sbjct: 150 TVSLRLEVQCEHNEKAAAGETDPTKLYKNAHVYARDIEFCPVGRQDKYFSGADAIA-PVN 208
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE 158
DILI KLR GQE+ L + KG G +H+K++P A + P S+ + K E
Sbjct: 209 PDILIAKLRPGQEISLSMHMHKGVGSDHSKFSPVATASYRLMPVISIERPILGKDAE 265
>gi|429192481|ref|YP_007178159.1| DNA-directed RNA polymerase subunit alpha [Natronobacterium
gregoryi SP2]
gi|448325893|ref|ZP_21515271.1| DNA-directed RNA polymerase subunit D [Natronobacterium gregoryi
SP2]
gi|429136699|gb|AFZ73710.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Natronobacterium gregoryi SP2]
gi|445613985|gb|ELY67670.1| DNA-directed RNA polymerase subunit D [Natronobacterium gregoryi
SP2]
Length = 249
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 54/236 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLTT------------PPEGEFGEDDTVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V P AD N + I++L+ GQ L A
Sbjct: 91 VEG----PATAYSGDLVSSDDLVQP-------ADEN-------VPIIELKDGQRLEAEAE 132
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPDNSMRHTLFPKPDEWPKSEYSEL 167
A GKEHAK V + E++ + S R D+ +E
Sbjct: 133 ATLDRGKEHAKHQGGVAVGYRHLQHVEVVGDVPEFEEEGS-RIVRGVIEDDGELVSTTEF 191
Query: 168 DETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
D H+ + K PN + F+VE+ G+ E +V ++ + + L+
Sbjct: 192 D---HDLSNRYPGKEVEIEDVPNAFVFHVETDGSFPIEELVTRAADTIEARATELE 244
>gi|448348754|ref|ZP_21537602.1| DNA-directed RNA polymerase subunit D [Natrialba taiwanensis DSM
12281]
gi|445642415|gb|ELY95483.1| DNA-directed RNA polymerase subunit D [Natrialba taiwanensis DSM
12281]
Length = 249
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PL++ +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLST------------PPEGEFGEDDTVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V P AD N + I+ L+ Q L A
Sbjct: 91 VEG----PATAYSGDLISSDELVQP-------ADEN-------VPIIDLKDDQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCFEY--------------DPDNSMRHTLFPKPDEW-PKSEYS 165
A GK+HAK V + + DP++ + + E P SE+
Sbjct: 133 AVLDRGKDHAKHQGGVAVGYRHLQRVAAVEDLPEFEDPESRIVRGVIEDDGELVPTSEFD 192
Query: 166 -ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+L E PN + F+VE+ G+ E++V ++ + + L+
Sbjct: 193 HDLSNRYPGKDVTVEDVPNAFVFHVETDGSFTVEDLVTRAAETIESRATELE 244
>gi|358378075|gb|EHK15758.1| hypothetical protein TRIVIDRAFT_38208 [Trichoderma virens Gv29-8]
Length = 371
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 20/163 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL--YSRDCTCVDFCSEC---- 53
+AI+ V +E N++V+ DE +A R+GLIP E + L Y + D +
Sbjct: 87 LAIEDVYIENNTSVIQDEVLAHRLGLIPFNGGREGIHNFLKWYKKPEAGEDAYANSFDWN 146
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRD--ADMNEYGETD 102
+V L++ C +D + A + + D VP T R + + N T+
Sbjct: 147 TVRLELNITCTVNPDASPNENDPLKAYNHAHVYAKDIVFVP-TGRQVEYFSGENAIAPTN 205
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI KLR Q + L + KG G +H+K++P A + P
Sbjct: 206 PDILIAKLRPKQTINLAMHMHKGIGADHSKFSPVATASYRLLP 248
>gi|46105474|ref|XP_380541.1| hypothetical protein FG00365.1 [Gibberella zeae PH-1]
Length = 381
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 20/163 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL--YSRDCTCVDFCSEC---- 53
+A++ V +E N++V+ DE +A R+GLIP E + L + + D + C
Sbjct: 97 LAVENVYIENNTSVIQDEVLAHRLGLIPFKGGREGLHNFLKWHKKPEAGDDPYAGCFDWN 156
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRD--ADMNEYGETD 102
+V L+V C +D + A + + D VP T R + + N T+
Sbjct: 157 TVRLELNVTCTVNEDASPTENDPLKAYHNAHVYARDIVFVP-TGRQAEYFSGENAIAPTN 215
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI KLR Q + L + KG G +HAK++P A + P
Sbjct: 216 PDILIAKLRPRQTINLAMHMHKGIGSDHAKFSPVATASYRLLP 258
>gi|313236133|emb|CBY11457.1| unnamed protein product [Oikopleura dioica]
gi|313243610|emb|CBY42293.1| unnamed protein product [Oikopleura dioica]
Length = 355
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVE---- 56
MA D V + N+T++ DE +A R+GLIP+ +D + +D T +D V+
Sbjct: 92 MAFDRVLIFNNTTLIQDEVLAHRLGLIPIKADFRQFKSRTEKDMTSIDCTKAAHVKGAKE 151
Query: 57 -------FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKL 109
F + K + T HV + S++ + PV N+ MN DI I K+
Sbjct: 152 DDSLLFHFKVIGKHQKNSTNHVQIVE--SSELKWSPVG--NQKETMNVMPCFHDITIAKI 207
Query: 110 RKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
+ Q + + +A +G G++HAK++P + P
Sbjct: 208 KPKQFIDIELHAFRGIGRDHAKFSPVCTAFYRLLP 242
>gi|157868180|ref|XP_001682643.1| putative DNA-directed RNA polymerase,alpha subunit [Leishmania
major strain Friedlin]
gi|68126098|emb|CAJ07151.1| putative DNA-directed RNA polymerase,alpha subunit [Leishmania
major strain Friedlin]
Length = 442
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 25/166 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV-VDRILYSRDCTCVDFCSECSVEFTL 59
+A D V +E N + + DE ++ R+GL+P+ + + I S + + + F L
Sbjct: 146 LAFDRVLIEENDSPVLDELLSHRLGLVPVAGPVMKMHYITESNQASFSNLDPSRVLLFEL 205
Query: 60 DVKCVDD---------QTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD-------- 102
D D Q + V T V R+ G TD
Sbjct: 206 DATGAKDAAVTPVYSGQLQWVPLPGQDKTAGAVAVACQAGREECAGAAGATDHSADEDDD 265
Query: 103 -------DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFE 141
DIL+ KL GQ ++L+A A KGFG HAKW+P + +E
Sbjct: 266 AVFLVHPDILLTKLGPGQRIKLKAIAVKGFGAVHAKWSPVSACYYE 311
>gi|433418975|ref|ZP_20405134.1| DNA-directed RNA polymerase subunit D [Haloferax sp. BAB2207]
gi|448546358|ref|ZP_21626522.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-646]
gi|448548345|ref|ZP_21627612.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-645]
gi|448557539|ref|ZP_21632728.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-644]
gi|448568220|ref|ZP_21637797.1| DNA-directed RNA polymerase subunit D [Haloferax lucentense DSM
14919]
gi|448600839|ref|ZP_21656218.1| DNA-directed RNA polymerase subunit D [Haloferax alexandrinus JCM
10717]
gi|448602318|ref|ZP_21656374.1| DNA-directed RNA polymerase subunit D [Haloferax sulfurifontis ATCC
BAA-897]
gi|448622863|ref|ZP_21669512.1| DNA-directed RNA polymerase subunit D [Haloferax denitrificans ATCC
35960]
gi|432199583|gb|ELK55744.1| DNA-directed RNA polymerase subunit D [Haloferax sp. BAB2207]
gi|445702811|gb|ELZ54751.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-646]
gi|445714096|gb|ELZ65863.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-644]
gi|445714440|gb|ELZ66202.1| DNA-directed RNA polymerase subunit D [Haloferax sp. ATCC BAA-645]
gi|445727170|gb|ELZ78784.1| DNA-directed RNA polymerase subunit D [Haloferax lucentense DSM
14919]
gi|445734852|gb|ELZ86408.1| DNA-directed RNA polymerase subunit D [Haloferax alexandrinus JCM
10717]
gi|445747833|gb|ELZ99287.1| DNA-directed RNA polymerase subunit D [Haloferax sulfurifontis ATCC
BAA-897]
gi|445753371|gb|EMA04788.1| DNA-directed RNA polymerase subunit D [Haloferax denitrificans ATCC
35960]
Length = 259
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 58/247 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V+ N++V+ DE I R+GL+PLT+ DF +V L+
Sbjct: 43 FSIDTVRFVENTSVMFDEMIGLRLGLVPLTT-------------PLDDFEPGDTVTVALE 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V D + D++S D VVP AD N I I++L++GQ L A
Sbjct: 90 V----DGPATAYSGDIESADDMVVP-------ADEN-------IPIIELKEGQRLEFEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPD--NSMRHTLFPKPDEWPKSEYS 165
A G+GK+HAK V + E+D N +R + E + +
Sbjct: 132 AVLGYGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFDEQEPNILRGVIEEAAAEHAEGDAE 191
Query: 166 ELDETQHEAPYN-----WEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
+ D E N + K P + F+VE+ G+ + +V V L + +
Sbjct: 192 DGDLVATETFGNDLTERYPGKEVEVHDVPGAFVFSVETDGSFDVDELVTRAVASLGDRAA 251
Query: 214 NLQTQLA 220
L+ ++A
Sbjct: 252 ELEEKVA 258
>gi|448361735|ref|ZP_21550348.1| DNA-directed RNA polymerase subunit D [Natrialba asiatica DSM
12278]
gi|445649415|gb|ELZ02352.1| DNA-directed RNA polymerase subunit D [Natrialba asiatica DSM
12278]
Length = 249
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 96/232 (41%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLTT------------PPEGEFGEDDTVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V P AD N + I+ L+ Q L A
Sbjct: 91 VEG----PATAYSGDLISSDELVQP-------ADEN-------VPIIDLKDDQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCFEY--------------DPDNSMRHTLFPKPDEW-PKSEYS 165
A GK+HAK V + + DP++ + + E P SE+
Sbjct: 133 AVLDRGKDHAKHQGGVAVGYRHLQRVAAVEDLPEFEDPESRIVRGVIEDDGELVPTSEFD 192
Query: 166 -ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+L E PN + F+VE+ G+ E++V ++ + L+
Sbjct: 193 HDLSNRYPGKDVTVEDVPNAFVFHVETDGSFTVEDLVTRAAETIESRAIELE 244
>gi|432329429|ref|YP_007247573.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Aciduliprofundum sp. MAR08-339]
gi|432136138|gb|AGB05407.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit
[Aciduliprofundum sp. MAR08-339]
Length = 273
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 24/135 (17%)
Query: 11 NSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV--DFCSECSVEFTLDVKCVDDQT 68
+ST L DE IA R+GLIPL +D + + +C + C C+V +TL+
Sbjct: 61 SSTPLFDEIIAHRLGLIPLPTDL---NMKFRDECDHPPDEGCPLCTVTYTLN-------- 109
Query: 69 RHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDIL-IVKLRKGQELRLRAYAKKGFGK 127
+H A + S D ++PV +++ D ++ IVKL++ Q + L A A G K
Sbjct: 110 KH-GPATVYSGD--LIPVGD-------DKFRPVDPLIPIVKLKEHQAILLEAEAIMGTAK 159
Query: 128 EHAKWNPTAGVCFEY 142
EHAKW T+GV ++Y
Sbjct: 160 EHAKWQVTSGVTYKY 174
>gi|313126017|ref|YP_004036287.1| DNA-directed RNA polymerase subunit d [Halogeometricum borinquense
DSM 11551]
gi|448285857|ref|ZP_21477096.1| DNA-directed RNA polymerase subunit D [Halogeometricum borinquense
DSM 11551]
gi|312292382|gb|ADQ66842.1| DNA-directed RNA polymerase, subunit D [Halogeometricum borinquense
DSM 11551]
gi|445575887|gb|ELY30350.1| DNA-directed RNA polymerase subunit D [Halogeometricum borinquense
DSM 11551]
Length = 260
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 98/248 (39%), Gaps = 59/248 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V+ NS+V+ DE I R+GL+PLT+ DF +V LD
Sbjct: 43 FSIDTVRFVENSSVMFDEMIGLRLGLVPLTT-------------PLDDFEQGDTVTLALD 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + D++++D V P D++ I++L++GQ L L A
Sbjct: 90 VEG----PATAYSGDIETSDELVKPA--------------EDNVPIIELKQGQRLELEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWPKSEYS 165
A G GK HAK V FE N +R + + E E +
Sbjct: 132 AVLGDGKSHAKHQGGVAVGYRHLHRVEVVGDANEFEEQEPNILRGVIEEQAAEHAADESA 191
Query: 166 ELDETQHEAPYN------WEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKL 212
E E + ++ + K P + F+VE+ G+ +V V + +
Sbjct: 192 EDGELVPTSEFDNDLTKRYPGKEVEVHDVPGAFVFHVETDGSFTVPELVRRAVESISDRA 251
Query: 213 SNLQTQLA 220
+ L+ ++A
Sbjct: 252 AELEEKVA 259
>gi|383621940|ref|ZP_09948346.1| DNA-directed RNA polymerase subunit D [Halobiforma lacisalsi AJ5]
gi|448702865|ref|ZP_21700222.1| DNA-directed RNA polymerase subunit D [Halobiforma lacisalsi AJ5]
gi|445776958|gb|EMA27934.1| DNA-directed RNA polymerase subunit D [Halobiforma lacisalsi AJ5]
Length = 249
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 100/232 (43%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PLT+ +F + +V ++D
Sbjct: 43 MAIDTVRFIENSSVMFDEQLALRLGLVPLTT------------PPEGEFGEDDTVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S D V P AD N + I++L++ Q L A
Sbjct: 91 VEG----PATAYSGDLVSEDDLVQP-------ADEN-------VPIIELKEDQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPDNS--MRHTLFPKPDEWPKSEYS 165
A GK+HAK + + E++ + S +R + + P SE+
Sbjct: 133 AVLDHGKDHAKHQGGVAIGYRHLQRVEVVGDLPEFEDEESRIVRGVIEDDGELVPTSEFD 192
Query: 166 -ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+L E PN + F+VE+ G+L E +V ++ + ++L+
Sbjct: 193 HDLSNRYPGKEVEVEDVPNAFVFHVETDGSLDVEELVTRAADSIEARATDLE 244
>gi|397620460|gb|EJK65733.1| hypothetical protein THAOC_13380 [Thalassiosira oceanica]
Length = 1014
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 33/142 (23%)
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE--- 158
+DIL+ KLR GQ + L A+A+KG GK+HAK++P A + P + ++ E
Sbjct: 858 EDILLAKLRPGQVIELEAHARKGVGKDHAKFSPVATASYRLMPRIEVVKPVYDDLAEELV 917
Query: 159 -WPKSEYSELDETQHEAPYNWEAK----------------------------PNKYFFNV 189
W + +L E + + +EAK P+ + F+V
Sbjct: 918 NWFEPGVFKL-EPADDGEHAFEAKVVNPYACTCSRNFMRNPILKESIRMSRIPDHFIFSV 976
Query: 190 ESAGALKPENIVIMGVTVLKQK 211
ES G+++PE IV + VLK+K
Sbjct: 977 ESVGSMEPEVIVAEALKVLKEK 998
>gi|254167082|ref|ZP_04873935.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
gi|197623938|gb|EDY36500.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
Length = 273
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 24/135 (17%)
Query: 11 NSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV--DFCSECSVEFTLDVKCVDDQT 68
+ST L DE IA R+GLIPL +D + + +C + C C+V +TL+
Sbjct: 61 SSTPLFDEIIAHRLGLIPLPTDL---NMKFRDECDHPPDEGCPLCTVTYTLN-------- 109
Query: 69 RHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDIL-IVKLRKGQELRLRAYAKKGFGK 127
+H A + S D ++PV ++ D ++ IVKL++ Q + L A A G K
Sbjct: 110 KH-GPATVYSGD--LIPVGDE-------KFKPVDPLIPIVKLKEHQAILLEAEAIMGTAK 159
Query: 128 EHAKWNPTAGVCFEY 142
EHAKW T+GV ++Y
Sbjct: 160 EHAKWQVTSGVSYKY 174
>gi|448712003|ref|ZP_21701546.1| DNA-directed RNA polymerase subunit D [Halobiforma nitratireducens
JCM 10879]
gi|445791088|gb|EMA41737.1| DNA-directed RNA polymerase subunit D [Halobiforma nitratireducens
JCM 10879]
Length = 249
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 97/235 (41%), Gaps = 52/235 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS---DEVVDRILYSRDCTCVDFCSECSVEF 57
MAID V+ NS+V+ DE +A R+GL+PLT+ DE F + +V
Sbjct: 43 MAIDTVRFIENSSVMFDEQLALRLGLVPLTTPPEDE---------------FVEDDTVTL 87
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
++DV+ + DL S + V P AD N + I++L+ Q L
Sbjct: 88 SIDVEG----PATAYSGDLVSEEDLVQP-------ADEN-------VPIIELKDDQRLEA 129
Query: 118 RAYAKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWPKS 162
A A +GK+HAK V FE + +R + + P S
Sbjct: 130 EADAVLDYGKDHAKHQGGVAVGYRHLQRVEVVDDLPEFEDEESQIIRGVIEDDGELVPTS 189
Query: 163 EYS-ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
E+ +L E PN + F+VE+ G+L E +V ++ + + L+
Sbjct: 190 EFDHDLSNRYPGKQVEVEDVPNAFVFHVETDGSLSVEELVTRAADSIEARATELE 244
>gi|452001561|gb|EMD94020.1| hypothetical protein COCHEDRAFT_1222623 [Cochliobolus
heterostrophus C5]
Length = 376
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 31/171 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL--YSR-------DCTCVDFCS 51
+AI+ V + N++++ DE +A R+GL+PL D R + YS+ T D+ +
Sbjct: 88 LAIEDVFIYQNTSIIQDEVLAHRLGLVPLCGDREGLRAMKWYSKPTEEDPESGTPTDWNT 147
Query: 52 ECSVEFTLDVKCV-------------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEY 98
V L+V+C D + ++ + D P+ R + +E
Sbjct: 148 ---VVLRLEVECKWQEGGLQRAVAGETDPDKLYVGHNVYAKDIEFKPI-GRQAELFSSEQ 203
Query: 99 GE-----TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
G+ DILI K+R GQ + L +A KG G++HAK++P A + P
Sbjct: 204 GKEIRSTNPDILIAKMRPGQSINLSMHAIKGIGQDHAKFSPVATASYRLMP 254
>gi|254167792|ref|ZP_04874642.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
gi|289597072|ref|YP_003483768.1| RNA polymerase insert [Aciduliprofundum boonei T469]
gi|197623320|gb|EDY35885.1| RNA polymerase Rpb3/Rpb11 dimerisation domain [Aciduliprofundum
boonei T469]
gi|289534859|gb|ADD09206.1| RNA polymerase insert [Aciduliprofundum boonei T469]
Length = 273
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 24/135 (17%)
Query: 11 NSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCV--DFCSECSVEFTLDVKCVDDQT 68
+ST L DE IA R+GLIPL +D + + +C + C C+V +TL+
Sbjct: 61 SSTPLFDEIIAHRLGLIPLPTDL---NMKFRDECDHPPDEGCPLCTVTYTLN-------- 109
Query: 69 RHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDIL-IVKLRKGQELRLRAYAKKGFGK 127
+H A + S D ++PV ++ D ++ IVKL++ Q + L A A G K
Sbjct: 110 KH-GPATVYSGD--LIPVGDE-------KFKPVDPLIPIVKLKEHQAILLEAEAIMGTAK 159
Query: 128 EHAKWNPTAGVCFEY 142
EHAKW T+GV ++Y
Sbjct: 160 EHAKWQVTSGVSYKY 174
>gi|257388632|ref|YP_003178405.1| RNA polymerase insert [Halomicrobium mukohataei DSM 12286]
gi|257170939|gb|ACV48698.1| RNA polymerase insert [Halomicrobium mukohataei DSM 12286]
Length = 259
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 100/243 (41%), Gaps = 58/243 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
++D V++ NS+V+ DE I R+GL+PLT+D DF E E TL
Sbjct: 43 FSVDTVRVIENSSVMFDEQIGLRLGLVPLTTD-------------LDDF--EVGDEVTLS 87
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ +T + + DL S+D+ V P AD D+I I+ L+ GQ L + A
Sbjct: 88 IDVSGPETAY--SGDLVSSDSLVGP-------AD-------DNIPIIDLKDGQRLEVEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWPKSEYS 165
A G+EHAK V FE D + +R + + E +
Sbjct: 132 AVLDRGREHAKHQGGVAVGYRHLQRVEVVGDKGEFEDDETHILRGVIEEQAAEHVDGDAD 191
Query: 166 ELD-----ETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
+ D E + + K N + F+VE+ G+L E + + V ++ +
Sbjct: 192 DGDLVLTEEFDSDLTKRYPGKELEVHDVENAFVFHVETDGSLSVEELTLRAVDSIRSRAD 251
Query: 214 NLQ 216
L+
Sbjct: 252 ELR 254
>gi|358391580|gb|EHK40984.1| hypothetical protein TRIATDRAFT_28889 [Trichoderma atroviride IMI
206040]
Length = 377
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 24/165 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL--YSRDCTCVDFCSEC---- 53
+AI+ V +E N++V+ DE +A R+GL+P E + L Y + D +
Sbjct: 93 LAIEDVFIENNTSVIQDEVLAHRLGLVPFNGGREGIHNFLKWYKKPAAGEDQYANSFDWN 152
Query: 54 SVEFTLDVKCVDDQTRHVTTAD-LKSTD-----ARVVPVTSRNRDADMNEY--GET---- 101
+V L+V C +Q T D LK+ AR + R A EY GE
Sbjct: 153 TVRLELNVTCTVNQDAAPTENDPLKAYHHAHVYARDIVFAPTGRQA---EYFSGENAIRP 209
Query: 102 --DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI KLR Q + L + KG G +H+K++P A + P
Sbjct: 210 VNPDILIAKLRPKQTINLAMHMHKGIGADHSKFSPVATASYRLLP 254
>gi|451849744|gb|EMD63047.1| hypothetical protein COCSADRAFT_92552 [Cochliobolus sativus ND90Pr]
Length = 376
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 31/171 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL--YSR-------DCTCVDFCS 51
+AI+ V + N++++ DE +A R+GL+PL D R + YS+ T D+ +
Sbjct: 88 LAIEDVFIYQNTSIIQDEVLAHRLGLVPLCGDREGLRAMKWYSKPTEEDPESGTPTDWNT 147
Query: 52 ECSVEFTLDVKCV-------------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEY 98
V L+V+C D + ++ + D P+ R + +E
Sbjct: 148 ---VVLRLEVECKWQEGGLQRAVAGETDPDKLYVGHNVYAKDIEFKPI-GRQAELFSSEQ 203
Query: 99 GE-----TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
G+ DILI K+R GQ + L +A KG G++HAK++P A + P
Sbjct: 204 GKEIRSTNPDILIAKMRPGQSINLSMHAIKGIGQDHAKFSPVATASYRLMP 254
>gi|256071190|ref|XP_002571924.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
gi|353231403|emb|CCD77821.1| putative dna-directed RNA polymerase I [Schistosoma mansoni]
Length = 490
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 25/166 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD--------------------EVVDRILY 40
+AI+ V + N++++ DE + R+GLIPL D + + ++Y
Sbjct: 76 LAIERVYVSQNTSIMPDEVMCHRLGLIPLAVDPKYFLFPTRKPPASDDLSGFDPKEHLVY 135
Query: 41 SRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNE--Y 98
CV F K DD + S+D + +P+ + ++N
Sbjct: 136 D---LCVGFTHSSKDSHNKPEKDKDDTLPVAQYLPVYSSDLKWIPLAGQEDHFNINNPPI 192
Query: 99 GETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
+ ILI KL G E+ R A KG G++HAK++P A +++ P
Sbjct: 193 PVSSTILINKLALGDEIEARCVAVKGIGRDHAKFSPVAAAYYKFHP 238
>gi|448611952|ref|ZP_21662382.1| DNA-directed RNA polymerase subunit D [Haloferax mucosum ATCC
BAA-1512]
gi|445742713|gb|ELZ94207.1| DNA-directed RNA polymerase subunit D [Haloferax mucosum ATCC
BAA-1512]
Length = 260
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 31/142 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V+ N++V+ DE I R+GL+PLT+ DF +V L+
Sbjct: 43 FSIDTVRFVENTSVMFDEMIGLRLGLVPLTT-------------PLDDFEPGDTVTVALE 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V D + D++S D +VP AD N I I++L++GQ L A
Sbjct: 90 V----DGPATAYSGDIESADDMIVP-------ADEN-------IPIIELKEGQRLEFEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVCFEY 142
A G+GK+HAK V + +
Sbjct: 132 AVLGYGKDHAKNQGGVAVGYRH 153
>gi|448409409|ref|ZP_21574707.1| DNA-directed RNA polymerase subunit D [Halosimplex carlsbadense
2-9-1]
gi|445673012|gb|ELZ25579.1| DNA-directed RNA polymerase subunit D [Halosimplex carlsbadense
2-9-1]
Length = 255
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 96/237 (40%), Gaps = 43/237 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID +++ NS+V+ DE I R+GL+PLT+ E + E ++ ++
Sbjct: 42 FSIDELRVVENSSVMFDEQIGLRLGLVPLTTPE-----------GEFEIGDEVTLALDVE 90
Query: 61 VKCVDDQTRHVT--TADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
++ T VT + D+ S+D V P D+I I+ L+ GQ L
Sbjct: 91 GPSREETTETVTAYSGDIVSSDEMVRPA--------------NDNIPIIDLKAGQRLEAE 136
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWP---------KSEYSELDE 169
A A G++HAK V + + + DE P E DE
Sbjct: 137 ADAVLDRGRDHAKHQGGVAVGYRHLQRVEVVGDKGEFADEEPHILRGVVEEDGELVHTDE 196
Query: 170 TQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
++ + K PN + F+VE+ G+L + +V V L+ + L+ +
Sbjct: 197 FGNDLTQRYPGKEIEVEDVPNAFVFHVETDGSLTVDELVTRAVGSLRDRADELRESI 253
>gi|296811216|ref|XP_002845946.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
otae CBS 113480]
gi|238843334|gb|EEQ32996.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
otae CBS 113480]
Length = 380
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 20/174 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL-TSDEVVDRILYSR----------------D 43
+AI++V ++ N++V+ DE +A R+GLIPL S E ++ + + + +
Sbjct: 90 LAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSLEGINWLRWFKVPKEGDPDSGSTHEDSN 149
Query: 44 CTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGET 101
+ EC + +D T A + + D P + + D
Sbjct: 150 TIVLRLVKECKLNPNAH-PSEEDPTVLYNNAHIYAKDLIFEPQGRQEKYFHGDGVIQSAN 208
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPK 155
DIL+ KLR GQ++ + + KG G +HAK++P A + PD + + K
Sbjct: 209 PDILLAKLRPGQKIDIEMHCIKGIGADHAKYSPVATASYRLLPDIQILRPILGK 262
>gi|298708063|emb|CBJ30416.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 361
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 111/274 (40%), Gaps = 65/274 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD----EVVDRILYSRD-----CTCVDFCS 51
+AI+ V + NS+++ DE +A R+GLIP+ ++ E V +D TCV
Sbjct: 84 VAIEHVYMFMNSSIIHDEILAHRLGLIPIMANPRMFEFVGEEGGEQDEPTEFNTCV---- 139
Query: 52 ECSVEFTLDVKCVDDQTRHV----TTADLKSTDARVVPVTSRNRD----ADMNEYGET-- 101
F L+VK D T + R + V S + D E E
Sbjct: 140 -----FKLEVKNPADPADMPDPMPTGTSYAAGPRRTMNVFSGAMEWCPHGDQVERFEGEG 194
Query: 102 ------DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH----- 150
DDILI KLR GQE+ + +KG GK+HAK++P A + P +++
Sbjct: 195 GLRPVHDDILIAKLRPGQEIVAEMHCRKGIGKDHAKFSPVATASYRLLPVVTLKEEVEGQ 254
Query: 151 -----------TLFPKPDEWPKSEYSELDETQH--------EAPYNWEAK------PNKY 185
+F D + +++ + P W K + +
Sbjct: 255 EAEELVAKCPLNVFDIEDLGGAGKRAKVARPRDCTMCRECIREP-GWSDKVSLSRVADHF 313
Query: 186 FFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
F +ES G L P+ ++ + VL+QK ++ ++
Sbjct: 314 IFGIESVGMLPPKELLKDSIQVLRQKCDSMIAEV 347
>gi|258576271|ref|XP_002542317.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Uncinocarpus reesii 1704]
gi|237902583|gb|EEP76984.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Uncinocarpus reesii 1704]
Length = 378
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 21/165 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSR-------DCTCVDFCSE 52
+AI++V + N++V+ DE ++ R+GL+PL S + ++ + + R D V
Sbjct: 86 LAIEFVFIHNNTSVIHDEVLSHRLGLVPLKGSLDGINWMTWFRMPQEGEEDSASVA-SDH 144
Query: 53 CSVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPV---TSRNRDADMNEYGE 100
++ L+ +C +D T A + + D PV T+ D
Sbjct: 145 NTIVLKLNAECTKNPNASPDEEDPTVLYNNAHVYARDIVFEPVGRQTTFFSGPDGEIQPS 204
Query: 101 TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DIL+ KLR GQ++ + + KG G++HAK++P A + PD
Sbjct: 205 NPDILLAKLRPGQKIDIEMHCIKGIGQDHAKFSPVATASYRLLPD 249
>gi|16082064|ref|NP_394490.1| DNA-directed RNA polymerase subunit D [Thermoplasma acidophilum DSM
1728]
gi|13124516|sp|Q9HJD9.1|RPOD_THEAC RecName: Full=DNA-directed RNA polymerase subunit D
gi|10640345|emb|CAC12159.1| DNA-dependent RNA polymerase, subunit D related protein
[Thermoplasma acidophilum]
Length = 271
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 33/167 (19%)
Query: 11 NSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD-FCSECSVEFTLDVKCVDDQTR 69
+S L DE +A R+GLIPL +D ++ + C+C CS C+V ++++
Sbjct: 61 SSLPLFDEMVAHRLGLIPLKTDLTMN---FRDQCSCGGKGCSLCTVTYSINKL----GPS 113
Query: 70 HVTTADLKS-TDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKE 128
V ++DL++ + ++PV +I IVKL Q + + A A G KE
Sbjct: 114 TVFSSDLQAVSHPDLIPVDG--------------EIPIVKLGPKQAILITAEAILGTAKE 159
Query: 129 HAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW-------PKSEYSELD 168
HAKW T+GV ++Y + + F ++W PKS SE D
Sbjct: 160 HAKWQVTSGVSYKYHREFHVSKKDF---EDWQKLKGACPKSVMSETD 203
>gi|393234912|gb|EJD42471.1| hypothetical protein AURDEDRAFT_115078 [Auricularia delicata
TFB-10046 SS5]
Length = 355
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ + N++V+ DE +A R+GL+PL D ++ + D ++ F L
Sbjct: 86 VAIEHAYVWNNTSVIHDEVLAQRLGLVPLDIDPA---LMEFHEGVSTD---RNTLVFRLQ 139
Query: 61 VKCVDDQTRHVTTADLKS--TDARV-------VPVTSRNRD-ADMNEYGETDDILIVKLR 110
V C + H D + D+ V VP + AD ++IL+ KLR
Sbjct: 140 VTCERRKGAHKDETDPEKLYKDSNVYSKHLTWVPQGEQATFFADHPPRPCNENILLAKLR 199
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
GQE+ + +A KG G EHAKW+P + P
Sbjct: 200 PGQEIEVELHAIKGRGNEHAKWSPVGTASYRLLP 233
>gi|448733727|ref|ZP_21715969.1| DNA-directed RNA polymerase subunit D [Halococcus salifodinae DSM
8989]
gi|445802247|gb|EMA52554.1| DNA-directed RNA polymerase subunit D [Halococcus salifodinae DSM
8989]
Length = 248
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 47/232 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
++ID V++ NS+V+ DE I R+G+IPL + +F S V +D
Sbjct: 43 LSIDTVRVVENSSVMFDEQIGHRLGMIPL-------------NAPPNEFESGEGVTLGID 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V D + DL S+D+ V P D++ I+ L++ Q L A
Sbjct: 90 VSGPD----TAYSGDLVSSDSVVEPA--------------EDNVPIIDLKEDQRLEAEAE 131
Query: 121 AKKGFGKEHAKWNPTAGVCFEY--------------DPDNSMRHTLFPKPDEWPKSEYSE 166
A GK HAK V + + D + ++ + + DE +E +
Sbjct: 132 AVLDTGKTHAKHQGGVAVGYRHLQKVEVVGDREEFADEEPNILRGVIEEDDELVLTEEFD 191
Query: 167 LDETQH--EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
D T + E PN + F+VE+ G+L E +V V L+ + + L+
Sbjct: 192 NDLTNRYPGKEVSVEDVPNAFVFHVETDGSLTVEELVTAAVDSLETRANELK 243
>gi|345004807|ref|YP_004807660.1| DNA-directed RNA polymerase [halophilic archaeon DL31]
gi|344320433|gb|AEN05287.1| DNA-directed RNA polymerase [halophilic archaeon DL31]
Length = 253
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 54/242 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
++ID V++ NS+V+ DE I R+GL+PLT T DF +V LD
Sbjct: 43 LSIDTVRMVQNSSVMFDEMIGLRLGLVPLT--------------TPDDFEIGDTVTLALD 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLR-----KGQEL 115
V+ + D++S+D V P AD N I I++L+ + Q +
Sbjct: 89 VEG----PATAYSGDIESSDPDVQP-------ADEN-------IPIIELKENPSGENQRI 130
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWP-------KSEYSEL- 167
L A A G +H K + V + + S+ DE P ++E EL
Sbjct: 131 ELEAEAVLERGSDHVKQSGGVAVGYRHLQQVSVVGDTGEFDDEEPNILRGVIETEDGELL 190
Query: 168 --DETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
DE ++ + K P + F+VE+ G++ + +V+ G+ ++ + L+ +
Sbjct: 191 HTDEFGNDLTQKYPGKELDVEDVPGAFVFHVETDGSMSAQELVLRGIDSIESRADELRDK 250
Query: 219 LA 220
+A
Sbjct: 251 VA 252
>gi|402224041|gb|EJU04104.1| RBP11-like subunit of RNA polymerase [Dacryopinax sp. DJM-731 SS1]
Length = 362
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 103/260 (39%), Gaps = 45/260 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A++ V + N++V+ DE +ASR+GL+PL + L S V ++ F +
Sbjct: 84 IAVENVWVWQNTSVMQDEVLASRLGLVPLRINPAR---LESWTPNAVP-TDANTISFEVQ 139
Query: 61 VKCVD---------DQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET---DDILIVK 108
V C D + + + ++ R PV ++ D + DI++VK
Sbjct: 140 VTCTSRPFPPRGSTDPSELYENSSIYASHLRWKPVGAQAALPDWLADPPSVAKPDIVLVK 199
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP------------DNSMRHTLFP-- 154
LR GQEL + + K G++HAK++P A + P + P
Sbjct: 200 LRPGQELNIEMHCVKSCGRDHAKYSPVATATYRLLPYIQILKPIPEQLQAKFMQSFSPGV 259
Query: 155 ------KPDEWPKSEYSELDET---------QHEAPYNWEAKPNKYFFNVESAGALKPEN 199
K +EW +T + E + + F +ESAG + P
Sbjct: 260 MGKRRNKQEEWEVFVKDARKDTMSRNVFLYPEFEGAVKLTRVRDHFLFTIESAGQMAPNA 319
Query: 200 IVIMGVTVLKQKLSNLQTQL 219
I+ + V ++KL + L
Sbjct: 320 ILPEAIAVFRRKLRTVSKAL 339
>gi|429853404|gb|ELA28479.1| DNA-directed RNA polymerases i and iii 40 kda polypeptide
[Colletotrichum gloeosporioides Nara gc5]
Length = 371
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 19/161 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL--YSR--DCTCVDFCSECSV 55
+AI+ V +E N++V+ DE +A R+GLIP T + E + L Y + D F +V
Sbjct: 90 VAIENVYIENNTSVIQDEVLAHRLGLIPFTGNPEGIHNFLKWYRKPEDGGKGSF-DYNTV 148
Query: 56 EFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYG---ETDD 103
+ L ++C D A + + D VP + R + E D
Sbjct: 149 QLRLRIECTRNPDASPNEKDTNVAFNHASVYAKDIEFVP-SGRQVEFFSGEDAIRPVNPD 207
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
ILI KLR GQ + L + KG G +HAK++P A + P
Sbjct: 208 ILIAKLRPGQCIELDMHMHKGIGADHAKFSPVATASYRLMP 248
>gi|167042559|gb|ABZ07283.1| putative RNA polymerase Rpb3/Rpb11 dimerisation domain protein,
partial [uncultured marine microorganism
HF4000_ANIW133F6]
gi|167043056|gb|ABZ07767.1| putative RNA polymerase Rpb3/Rpb11 dimerisation domain protein,
partial [uncultured marine microorganism
HF4000_ANIW141C7]
Length = 319
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 22/146 (15%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDC-TCVDF------CSECS 54
+D+ E N L DE IA R+ ++P+ ++ + + C TC D C C+
Sbjct: 87 GVDYTVWETNGP-LPDEMIAQRLAMVPIPTNH--EEYHFEASCPTCKDLVPEDRGCMTCN 143
Query: 55 VEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQE 114
+ +T + + VT D+ A+ + + R I I KL KGQ
Sbjct: 144 MIYTCTAYGSKEGST-VTAGDMIFLGAQSLEIPEHYRT-----------IPITKLYKGQM 191
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCF 140
L A A G G EHAKW+P GV F
Sbjct: 192 LEFIAIAVMGVGSEHAKWSPVCGVTF 217
>gi|333910738|ref|YP_004484471.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
gi|333751327|gb|AEF96406.1| DNA-directed RNA polymerase [Methanotorris igneus Kol 5]
Length = 195
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 87/218 (39%), Gaps = 73/218 (33%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDV 61
AI+ V + N++ + DE +A R+GLIP+ + S D + FTL
Sbjct: 42 AIENVYVHENTSSMHDEILAHRLGLIPIKGKPI------SEDEV---------ITFTL-- 84
Query: 62 KCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYA 121
V + V ++DLKS + V +I I+KL++GQ + L A
Sbjct: 85 --VKEGPCTVYSSDLKSENGEVA----------------FKNIPIIKLKEGQRIELVCEA 126
Query: 122 KKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAK 181
G GK HAKW P C + Y ++D+ + E
Sbjct: 127 TVGIGKVHAKWQP----C---------------------NATYKQIDDDEVE-------- 153
Query: 182 PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
F VES G + PE+I+ V +LK K ++L
Sbjct: 154 -----FLVESFGNMDPEDILKTAVEILKNKAETFLSEL 186
>gi|449299411|gb|EMC95425.1| hypothetical protein BAUCODRAFT_541052 [Baudoinia compniacensis
UAMH 10762]
Length = 388
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 78/186 (41%), Gaps = 41/186 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL--YSRDCTCVDFCSEC----- 53
+AI+ V + N++++ DE +A R+GLIPLT + L Y + DF ++
Sbjct: 92 LAIEDVFIFNNTSIIQDEVLAHRLGLIPLTGGKKGLEWLRWYKKPPPKDDFAAQALHDDD 151
Query: 54 -------------SVEFTLDVKC-----VDDQTRHVTTADLKSTDARVVPVTSR------ 89
++ TL V+C DD A TD V V S
Sbjct: 152 DGEPGVSTPNDHNTIVVTLKVECRWATEQDDGRDGRQLAQEGETDPEVRYVGSNVYAHQL 211
Query: 90 ----NRDADMNEYGET------DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVC 139
+ + GE DILI KLR GQ++ LR + KG G +HAK++P A
Sbjct: 212 VFEPQGEQTQHFSGENAIRPVNPDILIAKLRPGQKIDLRCHCYKGIGMDHAKFSPVATAS 271
Query: 140 FEYDPD 145
+ PD
Sbjct: 272 YRLLPD 277
>gi|389848214|ref|YP_006350453.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
gi|448618422|ref|ZP_21666659.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
gi|388245520|gb|AFK20466.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
gi|445746793|gb|ELZ98251.1| DNA-directed RNA polymerase subunit D [Haloferax mediterranei ATCC
33500]
Length = 260
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 59/248 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V+ N++V+ DE I R+GL+PLT+ +F +V L+
Sbjct: 43 FSIDTVRFVENTSVMFDEMIGLRLGLVPLTT-------------PLDEFEPGDTVTVALE 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V D + D++S D VVP AD N I I++L++GQ L A
Sbjct: 90 V----DGPATAYSGDIESADEMVVP-------ADEN-------IPIIELKEGQRLEFEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWPKSEYS 165
A G+GK+HAK V FE N +R + E E +
Sbjct: 132 AVLGYGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFEEQEPNILRGVIEEAAAEHADDEDA 191
Query: 166 EL------DETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKL 212
E DE ++ + K P + F+VE+ G+ + +V V L +
Sbjct: 192 EDGDLVVTDEFGNDLTKRYPGKEVEVHDVPGAFVFSVETDGSFTVDELVKRSVASLGDRA 251
Query: 213 SNLQTQLA 220
+ L+ ++A
Sbjct: 252 AELEEKVA 259
>gi|340520524|gb|EGR50760.1| predicted protein [Trichoderma reesei QM6a]
Length = 377
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 72/167 (43%), Gaps = 28/167 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL--YSRDCTCVDFCSEC---- 53
+AI+ V +E N++V+ DE +A R+GLIP E + L Y + D +
Sbjct: 93 LAIEDVYIENNTSVIQDEVLAHRLGLIPFNGGREGIHNFLKWYKKPEAGEDPYANSFDWN 152
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPV-------TSRNRDADMNE 97
+V L+V C D + A + + D VP + N A +N
Sbjct: 153 TVRLELNVTCTVNPDASPTETDPLKAYNHAHVYAKDIVFVPTGRQVEYFSGENAIAPVNP 212
Query: 98 YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI KLR Q + L + KG G +H+K++P A + P
Sbjct: 213 -----DILIAKLRPKQSINLAMHMHKGIGADHSKFSPVATASYRLLP 254
>gi|448583259|ref|ZP_21646615.1| DNA-directed RNA polymerase subunit D [Haloferax gibbonsii ATCC
33959]
gi|445729488|gb|ELZ81083.1| DNA-directed RNA polymerase subunit D [Haloferax gibbonsii ATCC
33959]
Length = 259
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 101/247 (40%), Gaps = 58/247 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+I+ V+ N++V+ DE I R+GL+PLT+ DF +V L+
Sbjct: 43 FSIETVRFVENTSVMFDEMIGLRLGLVPLTT-------------PLDDFEPGDTVTVALE 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V D + D++S D VVP AD N I I++L++GQ L A
Sbjct: 90 V----DGPATAYSGDIESADDMVVP-------ADEN-------IPIIELKEGQRLEFEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPD--NSMRHTLFPKPDEWPKSEYS 165
A G+GK+HAK V + E+D N +R + E + +
Sbjct: 132 AVLGYGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFDEQEPNILRGVIEEAAAEHAEGDAE 191
Query: 166 ELDETQHEAPYN-----WEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
+ D E N + K P + F+VE+ G+ + +V V L + +
Sbjct: 192 DGDLVATETFGNDLTERYPGKEVEVHDVPGAFVFSVETDGSFDVDELVTRAVASLGDRAA 251
Query: 214 NLQTQLA 220
L+ ++A
Sbjct: 252 ELEEKVA 258
>gi|300711111|ref|YP_003736925.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
gi|448296790|ref|ZP_21486841.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
gi|299124794|gb|ADJ15133.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
gi|445580773|gb|ELY35147.1| DNA-directed RNA polymerase subunit D [Halalkalicoccus jeotgali B3]
Length = 248
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 59/242 (24%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
++ID V+ NS+V+ +E +A R+GL+PL++ E D+ V LD
Sbjct: 43 LSIDSVRFIENSSVMFNEQLALRLGLVPLSTPE--------------DYELGEDVTLALD 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D +V P AD N + I++L++GQ L L A
Sbjct: 89 VEG----PATAYSGDLVSSDEQVEP-------ADRN-------VPIIELKEGQRLELEAD 130
Query: 121 AKKGFGKEHAKWNPTAGVCFEY---------------DPDNSMRHTLFPKPDEWPKSEYS 165
A G+EHAK V + + + N +R + E + E
Sbjct: 131 AVLDVGREHAKHQGGVAVGYRHLVRVNIEGDREEFADEEANIVRGVV-----ETDEGELV 185
Query: 166 ELDETQHEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
DE H+ + K P+ + F+VE+ G++ +V L + L+
Sbjct: 186 LTDEFDHDLTNRYPGKELRLEDVPDAFVFHVETDGSMTASELVDRAAASLGDRARELEDA 245
Query: 219 LA 220
+A
Sbjct: 246 VA 247
>gi|292656898|ref|YP_003536795.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
gi|448290898|ref|ZP_21482043.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
gi|291371468|gb|ADE03695.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
gi|445577951|gb|ELY32371.1| DNA-directed RNA polymerase subunit D [Haloferax volcanii DS2]
Length = 259
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 100/247 (40%), Gaps = 58/247 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V+ N++V+ DE I R+GL+PLT+ DF +V L+
Sbjct: 43 FSIDTVRFVENTSVMFDEMIGLRLGLVPLTT-------------PLDDFEPGDTVTVALE 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V D + D++S D VVP AD N I I++L++GQ L A
Sbjct: 90 V----DGPATAYSGDIESADDMVVP-------ADEN-------IPIIELKEGQRLEFEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVCF-------------EYDPD--NSMRHTLFPKPDEWPKSEYS 165
A G GK+HAK V + E+D N +R + E + +
Sbjct: 132 AVLGHGKDHAKNQGGVAVGYRHLQRVEVVGDAGEFDEQEPNILRGVIEEAAAEHAEGDAE 191
Query: 166 ELDETQHEAPYN-----WEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
+ D E N + K P + F+VE+ G+ + +V V L + +
Sbjct: 192 DGDLVATETFGNDLTERYPGKEVEVHDVPGAFVFSVETDGSFDVDELVTRAVASLGDRAA 251
Query: 214 NLQTQLA 220
L+ ++A
Sbjct: 252 ELEEKVA 258
>gi|448378226|ref|ZP_21560700.1| DNA-directed RNA polymerase subunit D [Halovivax asiaticus JCM
14624]
gi|445654208|gb|ELZ07062.1| DNA-directed RNA polymerase subunit D [Halovivax asiaticus JCM
14624]
Length = 250
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 95/232 (40%), Gaps = 45/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+ NS+V+ DE + R+GL+PLT+ T +F + V ++D
Sbjct: 43 LAIDTVRFIENSSVMFDEQLGLRLGLVPLTT------------PTPEEFGDDDVVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S++ +V + AD N + I++L+ Q L A
Sbjct: 91 VEG----PATAYSGDLVSSEPDLV------KPADEN-------VPIIQLKDDQRLEAEAE 133
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWPKSEYS 165
A GK HAK V FE + +R + + P SE+
Sbjct: 134 AVYDHGKNHAKHQGGVAVGYRHLQRVTVDGDLPEFEEEESQIVRGVIEDDGELIPTSEFG 193
Query: 166 -ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+L E E PN + F+VE+ G+ E +V V + + + L+
Sbjct: 194 HDLTERYPGKDVTVEDVPNAFVFHVETDGSFAVEELVTRAVDSIDDRAAELE 245
>gi|343469407|emb|CCD17607.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 141
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF-CSECSVEFTL 59
+A+ V + N++VL DE IA RIGL+PL S + + L + DC C C +C + +
Sbjct: 45 LAVVSVTIVQNTSVLPDEMIAHRIGLVPLYSMKAREMQL-AGDCLCGGLGCIKCQITGEM 103
Query: 60 DVKCVDDQ-TRHVTTADLKSTDARVVPVTSRNR 91
V+C D+ + V T LK D +V PV+S+ R
Sbjct: 104 KVRCPSDRHSLQVFTDSLKIDDEQVYPVSSKER 136
>gi|409722495|ref|ZP_11269943.1| DNA-directed RNA polymerase subunit D [Halococcus hamelinensis
100A6]
gi|448724486|ref|ZP_21706993.1| DNA-directed RNA polymerase subunit D [Halococcus hamelinensis
100A6]
gi|445785803|gb|EMA36589.1| DNA-directed RNA polymerase subunit D [Halococcus hamelinensis
100A6]
Length = 249
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 51/234 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS--DEVVDRILYSRDCTCVDFCSECSVEFT 58
++ID V++ NS+V+ DE I R+G++PL++ DE F SV
Sbjct: 44 LSIDTVRVIENSSVMFDEQIGHRLGMVPLSAPPDE---------------FEVGESVTLA 88
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
LDV + DL+S D+ V P A+ N + I+ L++ Q L +
Sbjct: 89 LDVSG----PETAYSGDLQSADSMVEP-------AEQN-------VPIIDLKEDQRLEVE 130
Query: 119 AYAKKGFGKEHAKWNPTAGVCFEY--------DPD-------NSMRHTLFPKPDEWPKSE 163
A A GK HAK V + + D D N +R + + P E
Sbjct: 131 AEAVLDSGKTHAKHQGGVAVGYRHLQHVEVAGDADEFADEEPNILRGVIEDDGELVPTEE 190
Query: 164 Y-SELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+ S+L + PN + F+VE+ G++ E +V+ V L + + L+
Sbjct: 191 FGSDLTNRYPGKELDVTDVPNAFVFHVETDGSMSVEELVLAAVDSLGDRANELR 244
>gi|322708977|gb|EFZ00554.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Metarhizium anisopliae ARSEF 23]
Length = 381
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 34/170 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS--DEVVDRILYSRD--------CTCVDFC 50
+AI+ V +E N++V+ DE +A R+GLIP D + + + + + C D+
Sbjct: 97 LAIENVYIENNTSVIQDEVLAHRLGLIPFNGGRDGLKNFLKWHKKPEAEEDPYAGCFDYN 156
Query: 51 SECSVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPV-------TSRNRDAD 94
+ V L+V C D A + + D VP + + A
Sbjct: 157 T---VRLELNVTCTVNPDAAPDERDPLEAFNNAHVYAKDIVFVPTGKQVEFFSGEDAIAP 213
Query: 95 MNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
+N DILI KLR Q + L + KG G +HAK++P A + P
Sbjct: 214 VNP-----DILIAKLRPRQTINLSMHMHKGIGADHAKFSPVATASYRLMP 258
>gi|400602680|gb|EJP70282.1| RNA polymerase Rpb3/RpoA insert domain-containing protein
[Beauveria bassiana ARSEF 2860]
Length = 384
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 22/166 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS--DEVVDRILYSRDCTCVDFCSECSVEFT 58
+AI+ V +E N++V+ DE +A R+GLIP + ++D + + + T D
Sbjct: 97 LAIENVFIENNTSVIQDEVLAHRLGLIPFKGGREGLLDFLKWHKKPTDGDDDDNDDSAGG 156
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSRN------RDADMNEYGETD---------- 102
D V + TA+ + P + + RD + GE +
Sbjct: 157 FDFDTVRLELNVTCTANADAAPGETDPTKAYHHAHVYARDIVFSPMGEQERYFSGADAIA 216
Query: 103 ----DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI K+R Q + L + KG G +HAK++P A + P
Sbjct: 217 PVNPDILIAKMRPKQTINLSMHMHKGIGSDHAKFSPVATASYRLLP 262
>gi|353241596|emb|CCA73401.1| probable Rpc40-40 kD subunit of DNA-directed RNA polymerases I and
III [Piriformospora indica DSM 11827]
Length = 382
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 125/301 (41%), Gaps = 57/301 (18%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL------YSRDCTCVDFCSECS 54
+AI+ V + N++V+ DE ++ R+GLIPL D R+L Y D T +
Sbjct: 87 VAIERVYVYDNTSVIQDEVLSHRLGLIPLRIDP---RMLEDAPQNYQDDST-----DRNT 138
Query: 55 VEFTLDVKCVD-DQTRHVTT--------ADLKSTDARVVPVTSRN--------RDADMNE 97
+ F+LDV C D D R TT + + + D + VP + R A+ N
Sbjct: 139 MVFSLDVTCADRDGVRPGTTDPEKLYINSSVYAKDLQWVPQGEQETIFASDPPRAANPN- 197
Query: 98 YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPD 157
ILI KLR Q + L +A K G++H K++P + P H KP
Sbjct: 198 ------ILIAKLRPEQSIHLEMHAVKSIGRDHTKFSPVGTAFYRLMP-----HIQLLKPG 246
Query: 158 EWPKSEYSELDETQHEAPYNWEAKPNKYFFNVESAGALK-PENIVIMGVTVLKQKLSNLQ 216
+ E ++D+ + + + K F + S G ++ + V V + N+
Sbjct: 247 DRYDEESRKVDKLEMA-----DQEQAKRFQDAFSEGVIEVKKERGKYYVRVKAPRRDNVT 301
Query: 217 TQLAHDRVF--YVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQT 274
++ R F V +W + + +ES G +I + + V K K+ L+
Sbjct: 302 RRILELREFDGMVRLGRVRDW------FIYTIESTGQYPAVDIFPVALGVFKSKIRTLKA 355
Query: 275 Q 275
+
Sbjct: 356 E 356
>gi|342874377|gb|EGU76391.1| hypothetical protein FOXB_13069 [Fusarium oxysporum Fo5176]
Length = 381
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRIL--YSRDCTCVDFCSEC---- 53
+AI+ V +E N++V+ DE +A R+GLIP E + L + + D + C
Sbjct: 97 LAIENVYIENNTSVIQDEVLAHRLGLIPFKGGREGLHNFLKWHKKPEAGEDPYAGCFDWN 156
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYG---ET 101
+V L+V C +D + A + + D VP T + + E
Sbjct: 157 TVRLELNVTCTVNEDASPAENDPLKAYHNAHVYARDIVFVP-TGKQVEYFSGEDAIAPTN 215
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI KLR Q + L + KG G +HAK++P A + P
Sbjct: 216 PDILIAKLRPRQTINLAMHMHKGIGSDHAKFSPVATASYRLLP 258
>gi|374635695|ref|ZP_09707289.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
gi|373561548|gb|EHP87781.1| DNA-directed RNA polymerase [Methanotorris formicicus Mc-S-70]
Length = 194
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 86/218 (39%), Gaps = 73/218 (33%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDV 61
AI+ V + N++ + DE +A R+GLIP+ V S D + FTL
Sbjct: 42 AIENVYVHENTSSMHDEILAHRLGLIPIKGKPV------SEDEV---------ITFTL-- 84
Query: 62 KCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYA 121
+ + V ++DLKS + VV +I I+KLR+GQ + L A
Sbjct: 85 --IKEGPCTVYSSDLKSENGEVV----------------FKNIPIIKLREGQRIELVCEA 126
Query: 122 KKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAK 181
G GK HAKW P + Y ++ + + E
Sbjct: 127 TVGIGKIHAKWQPC-------------------------NATYKQISDDEVE-------- 153
Query: 182 PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
F VES G + PE+I+ V +LK K ++L
Sbjct: 154 -----FLVESFGNMDPEDILKTSVEILKNKAEVFLSEL 186
>gi|357612390|gb|EHJ67960.1| DNA-directed RNA polymerase [Danaus plexippus]
Length = 322
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 107/246 (43%), Gaps = 32/246 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V ++ N++++ DE +A R+GLIPL +D R+ R + ++EF+L
Sbjct: 78 MAIEKVMIKNNTSIIQDEVLAHRLGLIPLKADP---RLFEFRPENAEEGTEFDTLEFSLK 134
Query: 61 VKCVDDQ---TRHVTTADL------KSTDARVVPV---TSRNRDADMNEYGETDDILIVK 108
+KC +++ DL S+ + P+ S +++AD+ DDILI K
Sbjct: 135 IKCTNNKYGPKDSFRAEDLYENHSVYSSSIKWHPIGNQASIHKEADVGPVD--DDILISK 192
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNS--MRHTLFPKPDEWPKSEYSE 166
+R G EL + + P + E D + ++ P +
Sbjct: 193 MRPGHELDMHLVVHIFDTTASYRLLPEVTLTREVDGSEATLLQSCFSPGVIGLDSDGKAF 252
Query: 167 LDETQHEA----PYNWEAKP---------NKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
+ + ++++ Y ++ + + FNVES GA+ P I + V +L+ K
Sbjct: 253 VRDARYDSCSRNAYRYDCIKDAVILSRIRDHFIFNVESVGAMPPNVIFVEAVKILRDKCK 312
Query: 214 NLQTQL 219
L +L
Sbjct: 313 TLLDEL 318
>gi|433638723|ref|YP_007284483.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Halovivax
ruber XH-70]
gi|433290527|gb|AGB16350.1| DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Halovivax
ruber XH-70]
Length = 250
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 45/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+ NS+V+ DE + R+GL+PLT+ T +F + V ++D
Sbjct: 43 LAIDTVRFIENSSVMFDEQLGLRLGLVPLTT------------PTPEEFGDDDVVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S++ +V + AD N + I++L+ Q L A
Sbjct: 91 VEG----PATAYSGDLVSSEPDLV------KPADEN-------VPIIQLKDDQRLEAEAD 133
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWPKSEYS 165
A GK+HAK V FE + +R + + P SE+
Sbjct: 134 AVYDHGKKHAKHQGGVAVGYRHLQRVTVDGDLPEFEDEETQIVRGVIEDDGELIPTSEFG 193
Query: 166 -ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+L E E PN + F+VE+ G+ E +V V + + + L+
Sbjct: 194 HDLTERYPGKDVTVEDVPNAFVFHVETDGSFAVEELVTRAVGSIDDRAAELE 245
>gi|396471375|ref|XP_003838857.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Leptosphaeria maculans JN3]
gi|312215426|emb|CBX95378.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Leptosphaeria maculans JN3]
Length = 374
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 23/166 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL-TSDEVVDRILYSRDCTCVDFCSECSVEFT- 58
+AI+ V + N++++ DE +A R+GLIPL S + + + + T ++ S ++
Sbjct: 88 LAIEDVFIYQNTSIIQDEVLAHRLGLIPLCGSCDGLRWMKWFHKATGLEDGSGTQSDYNT 147
Query: 59 ----LDVKCVDDQTRHVTTADLKSTD-----------ARVVPVTSRNRDADMNEYGE--- 100
L+ KC + Q + A TD AR + R A M G
Sbjct: 148 IVLRLNKKC-EWQDGGLQRAVAGETDPDKLYINHNVYARDMIWEPIGRQAQMFPPGAEIR 206
Query: 101 --TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI K+R GQE+ L +A KG G++HAK++P A + P
Sbjct: 207 STNPDILIAKMRPGQEIALSMHAHKGIGQDHAKFSPVATASYRLLP 252
>gi|378727237|gb|EHY53696.1| DNA-directed RNA Polymerase III subunit C5 [Exophiala dermatitidis
NIH/UT8656]
Length = 373
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 29/167 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD-EVVDRILYSRDCTCVDFCSECS----- 54
+AI+ V ++ N++V++DE +A R+GLIPL + E + + + D +F E +
Sbjct: 90 LAIEKVYVQNNTSVIADEVLAHRLGLIPLKGNIEGLKWLKWFIDSNP-EFGFEGTGRADY 148
Query: 55 --VEFTLDVKCVDDQTRHVTTADLKSTDA--RVVPVTSRNRDADMNEYGE---------- 100
V L V+C ++ H AD +T+ + + T +R G+
Sbjct: 149 NTVVLHLHVRC--ERNPH---ADKNATEPEEKYINSTVYSRHIQWEPQGQQQERFKDGPI 203
Query: 101 ---TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
+ DILI KLR GQE+ + +A G G +HAK++P A + P
Sbjct: 204 EPVSPDILIAKLRPGQEIDMVLHAHLGIGADHAKFSPVATATYRLMP 250
>gi|448330852|ref|ZP_21520128.1| DNA-directed RNA polymerase subunit D [Natrinema versiforme JCM
10478]
gi|445610688|gb|ELY64457.1| DNA-directed RNA polymerase subunit D [Natrinema versiforme JCM
10478]
Length = 249
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 93/232 (40%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA+D V+ NS+V+ DE +A R+GL+PLT+ V +F + +V ++D
Sbjct: 43 MAVDTVRFVENSSVMFDEQLALRMGLVPLTTPPV------------GEFGEDETVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S D V P AD D++ I++L+ GQ L A
Sbjct: 91 VEG----PATAYSGDLVSEDDLVQP-------AD-------DNVPIIELKDGQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK---------SEYSELDETQ 171
A GK HAK V + + + L DE + E E
Sbjct: 133 AVVNRGKNHAKHQGGVAVGYRHLQRVEVDGDLPEFEDEESRIIRGVIEDDGELVATSEFD 192
Query: 172 HEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
H+ + K PN + F+VE+ G+ E + + + + L+
Sbjct: 193 HDLSNRYPGKEVRVEDVPNAFVFHVETDGSFPIEELATRAADTIAARATELE 244
>gi|261403745|ref|YP_003247969.1| RNA polymerase insert [Methanocaldococcus vulcanius M7]
gi|261370738|gb|ACX73487.1| RNA polymerase insert [Methanocaldococcus vulcanius M7]
Length = 191
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 84/219 (38%), Gaps = 73/219 (33%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
AI+ V + NS+ + DE +A R+GLIP+ ++D + + FTL+
Sbjct: 41 FAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLLDTEI---------------ITFTLE 85
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ V ++DLKS + V +I IVKL KGQ +++
Sbjct: 86 ----KEGPCTVYSSDLKSENGEVA----------------FKNIPIVKLGKGQRIKIECE 125
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
A G GK HAKW P V Y +L E + E
Sbjct: 126 AVPGIGKVHAKWQPCNAV-------------------------YKQLSEDEVE------- 153
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
F VE+ G + E I+ V +L+ K + QL
Sbjct: 154 ------FFVETFGQIDAEQILKEAVKILRDKADSFLQQL 186
>gi|412991198|emb|CCO16043.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Bathycoccus
prasinos]
Length = 438
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 71/168 (42%), Gaps = 22/168 (13%)
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK 161
DDIL+ KL GQE+ L A+ K G +HAK++P + P + + +
Sbjct: 283 DDILLAKLVPGQEIELEAHCMKSIGADHAKFSPVGTCWYRLVPTVYFKKPIVGADAKVFM 342
Query: 162 SEYSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENI-VIMGVTVLKQKLSNLQTQLA 220
SE S+ P PN F ++ +G I I G + +++ L +
Sbjct: 343 SECSD--------PI-----PNHKCFELKGSGEKAEVKIKSIRGCDLCLERIRELSGESG 389
Query: 221 HDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 268
D V+ K + Y F +ES GA KP+ I V++LK K
Sbjct: 390 WDSKIAVLK--------KRDHYIFTIESVGARKPDVIFKEAVSILKSK 429
>gi|289191580|ref|YP_003457521.1| RNA polymerase insert [Methanocaldococcus sp. FS406-22]
gi|288938030|gb|ADC68785.1| RNA polymerase insert [Methanocaldococcus sp. FS406-22]
Length = 191
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 87/218 (39%), Gaps = 73/218 (33%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDV 61
AI+ V + NS+ + DE +A R+GLIP+ +++ SE + FTL+
Sbjct: 42 AIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLIE--------------SEV-ITFTLE- 85
Query: 62 KCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYA 121
+ V ++DLKS + V +I IVKL +GQ++++ A
Sbjct: 86 ---KEGPCTVYSSDLKSENGEVA----------------FKNIPIVKLGRGQKIKIECEA 126
Query: 122 KKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAK 181
G GK HAKW P V Y ++ E + E
Sbjct: 127 VPGIGKTHAKWQPCNAV-------------------------YKQVAEDEVE-------- 153
Query: 182 PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
F VE+ G ++ E I+ V +LK K + QL
Sbjct: 154 -----FFVETFGQMEAEEILEEAVKILKNKAESFLQQL 186
>gi|448368976|ref|ZP_21555743.1| DNA-directed RNA polymerase subunit D [Natrialba aegyptia DSM
13077]
gi|445651519|gb|ELZ04427.1| DNA-directed RNA polymerase subunit D [Natrialba aegyptia DSM
13077]
Length = 249
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 94/232 (40%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V+ NS+V+ DE +A R+GL+PL++ +F + +V ++D
Sbjct: 43 MAIDTVRFVENSSVMFDEQLALRLGLVPLST------------PPEGEFGEDDTVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V P AD N + I+ L+ Q L A
Sbjct: 91 VEG----PATAYSGDLISSDELVQP-------ADEN-------VPIIDLKDDQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWPKSEYS 165
A GK+HAK V FE +R + + P SE+
Sbjct: 133 AVLDRGKDHAKHQGGVAVGYRHLQRVAAVEDLPEFEDSESRIVRGVIEDDGELVPTSEFD 192
Query: 166 -ELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+L E PN + F+VE+ G+ E++V ++ + + L+
Sbjct: 193 HDLSNRYPGKDVTVEDVPNAFVFHVETDGSFTVEDLVTRAAETIESRATELE 244
>gi|169603299|ref|XP_001795071.1| hypothetical protein SNOG_04658 [Phaeosphaeria nodorum SN15]
gi|160706369|gb|EAT88418.2| hypothetical protein SNOG_04658 [Phaeosphaeria nodorum SN15]
Length = 350
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 29/169 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL--YSRDC-------TCVDFCS 51
+AI+ V + N++++ DE +A R+GLIPL R L Y ++ T D+ +
Sbjct: 64 LAIEDVFIYQNTSIIQDEVLAHRLGLIPLCGSHKGLRWLKWYKKETDDDEGSGTPSDYNT 123
Query: 52 ECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADM---------NEY--GE 100
V LDV+C Q + A TD + + D+ +E+ GE
Sbjct: 124 ---VIMKLDVEC-SWQEGGLQRAVQGETDPDKLYIGHNVYAKDLVWEPLGKQFDEFPSGE 179
Query: 101 -----TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILIVK+R GQ+++L +A KG G++HAK++P A + P
Sbjct: 180 EIRATNPDILIVKMRPGQKIQLSMHAIKGIGQDHAKFSPVATASYRLMP 228
>gi|260803742|ref|XP_002596748.1| hypothetical protein BRAFLDRAFT_58082 [Branchiostoma floridae]
gi|229282008|gb|EEN52760.1| hypothetical protein BRAFLDRAFT_58082 [Branchiostoma floridae]
Length = 290
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 32/169 (18%)
Query: 83 VVPVTSRNRDADMNEYGET----DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGV 138
++P+ + R + + G+ DDILI KLR GQE+ L+ + KG G++HAK++P A
Sbjct: 110 LIPIHADPRLFEYRQEGDIKPVHDDILIAKLRPGQEMDLKLHCVKGIGRDHAKFSPVATA 169
Query: 139 CFEYDPD------------NSMRHTLFPKPDEWPKSE--------YSELDETQHEAPYNW 178
+ P+ + + P E + S LD E +
Sbjct: 170 SYRLLPEIVLTEEVKGERADRLVRCFSPGVMEVTEENGVKKARVVNSRLDTCSREIFRHP 229
Query: 179 EAKP--------NKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+ K + + F+VES GAL P+ +V VL K ++L
Sbjct: 230 DLKDCVKLNKLRDHFIFSVESTGALAPDVLVCEATKVLMGKCRKFLSEL 278
>gi|339238573|ref|XP_003380841.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Trichinella
spiralis]
gi|316976212|gb|EFV59540.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Trichinella
spiralis]
Length = 277
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 33/227 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N+ V++DE A R+GL+P+ +D + Y D + +E ++ F L
Sbjct: 73 MAIEKVHMFQNTGVIADEVFAHRLGLLPIKADP--RQFQYRTD---DEPKAEDTLIFELK 127
Query: 61 VKC-VDD-QTRHVTTADL--KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
VK VD+ + V ++ L K D + + + DIL+ L+ GQE+
Sbjct: 128 VKSNVDEIENERVCSSALEWKPIDGQ------EEKFKNCPPKVVHPDILLAILKSGQEIE 181
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE----LDETQH 172
+ KG G++HAK++P A + + P+ + + + +S +S+ L + +
Sbjct: 182 CVCHCTKGIGRDHAKFSPVATASYRFLPELKFLRDFYDEEAKLVQSVFSKDVVCLIKCED 241
Query: 173 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
NVES G E +++ + ++ K + L +L
Sbjct: 242 --------------VNVESVGQYAVEELIVEAINIMINKCNRLLEEL 274
>gi|398014106|ref|XP_003860244.1| DNA-directed RNA polymerase, alpha subunit, putative [Leishmania
donovani]
gi|322498464|emb|CBZ33537.1| DNA-directed RNA polymerase, alpha subunit, putative [Leishmania
donovani]
Length = 442
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 25/166 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV-VDRILYSRDCTCVDFCSECSVEFTL 59
+A D V +E N + + DE ++ R+GL+P+ + + I S + + + F L
Sbjct: 146 LAFDRVLIEENDSPVLDELLSHRLGLVPVAGPVMKMHYITESNQASFSNLDPSRVLLFEL 205
Query: 60 DVKCVDDQ------TRHVTTADLKSTDARVVPVTS---RNRDADMNEYGETD-------- 102
D D +R + L D + V R+ G T+
Sbjct: 206 DATGAKDAAVTPVYSRQLQWVPLPGQDKKTGAVAGACQTGREEYAGAAGATEHSADDDDD 265
Query: 103 -------DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFE 141
DIL+ KL GQ ++L+A A KG G HAKW+P + +E
Sbjct: 266 AVFLVHPDILLSKLGPGQRIKLKAIAVKGLGAVHAKWSPVSACYYE 311
>gi|349592821|gb|AEP96149.1| RNA polymerase I polypeptide C, partial [Euplectes orix]
Length = 165
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 28/146 (19%)
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPK 161
DDILI LR GQE+ + + KG GK+HAK++P A + PD ++ + + E +
Sbjct: 14 DDILIALLRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITLLQPIEDEAAETLQ 73
Query: 162 SEYS--------------------ELDE-----TQHEAPYN---WEAKPNKYFFNVESAG 193
+S LD +HE N N Y F+VES G
Sbjct: 74 KCFSPGVIEIQNINGKKVARVANARLDTFSREVFRHEGLKNLVRLARVRNHYIFSVESTG 133
Query: 194 ALKPENIVIMGVTVLKQKLSNLQTQL 219
L P+ +V + +L K +L
Sbjct: 134 ILPPDVLVSEAIKILMGKCQRFLNEL 159
>gi|146084517|ref|XP_001465028.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
infantum JPCM5]
gi|134069124|emb|CAM67271.1| putative DNA-directed RNA polymerase, alpha subunit [Leishmania
infantum JPCM5]
Length = 442
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 25/166 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV-VDRILYSRDCTCVDFCSECSVEFTL 59
+A D V +E N + + DE ++ R+GL+P+ + + I S + + + F L
Sbjct: 146 LAFDRVLIEENDSPVLDELLSHRLGLVPVAGPVMKMHYITESNQASFSNLDPSRVLLFEL 205
Query: 60 DVKCVDDQ------TRHVTTADLKSTDARVVPVTS---RNRDADMNEYGETD-------- 102
D D +R + L D + V R+ G T+
Sbjct: 206 DATGAKDAAVTPVYSRQLQWVPLPGQDKKTGAVAGACQTGREEYAGAAGATEHSADDDDD 265
Query: 103 -------DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFE 141
DIL+ KL GQ ++L+A A KG G HAKW+P + +E
Sbjct: 266 AVFLVHPDILLSKLGPGQRIKLKAIAVKGLGAVHAKWSPVSACYYE 311
>gi|452836262|gb|EME38206.1| hypothetical protein DOTSEDRAFT_57363 [Dothistroma septosporum
NZE10]
Length = 393
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 115/301 (38%), Gaps = 88/301 (29%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL--YSRDCTCVDFCSEC----- 53
++I+ V N++++ DE +A R+GLIPLT R + + + DF +
Sbjct: 92 LSIEDVYFFDNTSIIQDEVLAHRLGLIPLTGSRKGLREMRWFKKPPPKDDFAARAQWDAD 151
Query: 54 -----------------SVEFTLDVKCVDDQTRHVTTADLKSTDARVVP----VTSRNRD 92
+V +L V+C T D D R + + +
Sbjct: 152 RAEGRVETDNDAPNDFNTVVLSLQVEC------RWKTVDEDGVDGRQLAKDGETDPKEKY 205
Query: 93 ADMNEY------------------GE------TDDILIVKLRKGQELRLRAYAKKGFGKE 128
A+ N Y GE DILI KLR GQ + +R +A KG G +
Sbjct: 206 ANSNVYAHQIQFEPQGDRQTGWFSGEEIIRPVNPDILIAKLRPGQRINVRMHAIKGIGAD 265
Query: 129 HAKWNPTAGVCFEYDPDNSMRHTL-----------FP----KPDEWPKSEYSEL------ 167
HAK++P A + PD + + FP K ++ P+S +
Sbjct: 266 HAKFSPVATASYRLLPDIKITQPIVGKDAKTFQHCFPRGVIKLEDDPESGEKKAVVDDPF 325
Query: 168 -DETQHEAPYNWEAKP--------NKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQ 218
D E + E K + + F+VESAG + + + I V +LK+K + +
Sbjct: 326 KDTVSREVLRHDEFKGKVKLGRIRDHFIFSVESAGQFESDELFIDSVRLLKKKANTFKGF 385
Query: 219 L 219
L
Sbjct: 386 L 386
>gi|315044489|ref|XP_003171620.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
gypseum CBS 118893]
gi|311343963|gb|EFR03166.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Arthroderma
gypseum CBS 118893]
Length = 380
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSECSVE--- 56
+AI++V ++ N++V+ DE +A R+GLIPL S E ++ + + + D S + E
Sbjct: 90 LAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSLEGLNWLRWFKAPKEGDPDSGSTHEDSN 149
Query: 57 ---FTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGETD 102
L +C +D T A + + D P + + D
Sbjct: 150 TIVLRLVKECTKNRSAPPGEEDPTILYNNAHIYAKDLVFEPQGRQEKYFHGDGAIQSCNP 209
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DIL+ KLR GQ++ + + KG G +HAK++P A + PD
Sbjct: 210 DILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPD 252
>gi|6172230|dbj|BAA85898.1| RNA-polymerase D [Halobacterium salinarum]
Length = 249
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 93/234 (39%), Gaps = 51/234 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
++ID V+ NS+V+ DE + R+GL+PLT+ E D+ + V LD
Sbjct: 44 LSIDTVRFVENSSVMFDEQLGLRLGLVPLTTPE--------------DYPA-GEVTLALD 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ DL S D V AD N I I++L+ Q L L A
Sbjct: 89 VEG----PGTAYPGDLVSNDPEV-------EAADEN-------IPIIELKDDQRLELEAD 130
Query: 121 AKKGFGKEHAKWNPTAGVCFEY----------------DPDNSMRHTLFPKPDEW-PKSE 163
A G G++HAK V + + D D M + + DE P +
Sbjct: 131 AVDGHGRDHAKHQGGVAVGYRHLQLQRVHVVGDSPEYADDDPQMLRGVIEEDDELVPTDD 190
Query: 164 YSELDETQHEAP-YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+ T++ E + F+VES G++ E +V+ V L + L+
Sbjct: 191 FDNDLTTRYPGKEVEIEDVDGAFVFHVESDGSMPVEELVLRAVDTLVDRADELE 244
>gi|428166654|gb|EKX35626.1| hypothetical protein GUITHDRAFT_90183 [Guillardia theta CCMP2712]
Length = 375
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/296 (22%), Positives = 110/296 (37%), Gaps = 52/296 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N+ VL DE +A R+GLIP+ +D + +S E + L+
Sbjct: 89 MAIEKVFVYNNTGVLRDELVAQRLGLIPIMADPEI----FSWPSAEAKGADETTNLDKLE 144
Query: 61 VKCV-------------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILI 106
+ + D + + S+ +P+ + + DDILI
Sbjct: 145 KEVIKFKLKVKCKKPPHDSADKEPINGKVFSSQLEWIPIGKQAETFKSSPPAPVHDDILI 204
Query: 107 VKLRKGQELRLRAYAKKG---FGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSE 163
+LR GQEL + + KG + HAKW+P A + L P+ D +
Sbjct: 205 TRLRPGQELDMEMHCHKGNNCGDRGHAKWSPVATAWYR----------LLPRIDLVEEVT 254
Query: 164 YSELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSN---LQTQLA 220
D + P + F++E A + I+ V L + +LA
Sbjct: 255 GDLADSLVKKCPMD--------CFDIEEAHGVPGGRRAIVSDKVRDCTLCRECIREPELA 306
Query: 221 HDRVFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
K + + F +ES G +KP + + VLK K N+ L
Sbjct: 307 K----------AVRLARKKDHFIFTIESTGIIKPAQLFKQALQVLKGKAQNMLDHL 352
>gi|346324382|gb|EGX93979.1| DNA-directed RNA polymerases I [Cordyceps militaris CM01]
Length = 380
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 28/167 (16%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV-VDRIL--YSRDCTCVDFCSEC---- 53
+AI+ V +E N++V+ DE +A R+GLIP + L Y + D +
Sbjct: 97 LAIENVFIENNTSVIQDEVLAHRLGLIPFQGGRAGLQDFLKWYKKPADAEDDYAGGFDYN 156
Query: 54 SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPV-------TSRNRDADMNE 97
+V L+V C D T+ A + + D VP+ + + A +N
Sbjct: 157 TVRLELNVTCTPNKDAAPGETDPTKAYHNAHVYARDIVFVPMGEQETYFSGADAIAPVNP 216
Query: 98 YGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI K+R Q + L + KG G +HAK++P A + P
Sbjct: 217 -----DILIAKMRPKQTINLSMHMHKGIGADHAKFSPVATASYRLMP 258
>gi|401419509|ref|XP_003874244.1| DNA-directed RNA polymerase, alpha subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322490479|emb|CBZ25739.1| DNA-directed RNA polymerase, alpha subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 434
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 17/158 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEV-VDRILYSRDCTCVDFCSECSVEFTL 59
+A D V +E N + + DE ++ R+GL+P+ + + I S + + + F L
Sbjct: 146 LAFDRVLIEENDSPVLDELLSHRLGLVPVAGPVMKMHYITESNQASFNNLDPSRVLLFEL 205
Query: 60 DVKCVDDQ------TRHVTTADLKSTDARVVPVTSRNRDADMNEYGETD----------D 103
D D +R + L D + V + G D D
Sbjct: 206 DATGAKDAAVTPVYSRQLQWVPLPGQDKKTGAVAGVCQAGSEECAGADDDDDAVFLVHPD 265
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFE 141
IL+ KL GQ ++L+A A KG G HAKW+P + +E
Sbjct: 266 ILLTKLGPGQRIKLKAIAVKGLGAVHAKWSPVSACYYE 303
>gi|256810443|ref|YP_003127812.1| RNA polymerase insert [Methanocaldococcus fervens AG86]
gi|256793643|gb|ACV24312.1| RNA polymerase insert [Methanocaldococcus fervens AG86]
Length = 191
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 85/218 (38%), Gaps = 73/218 (33%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDV 61
AI+ V + NS+ + DE IA R+GLIP+ +++ + + FTL+
Sbjct: 42 AIEDVYIFENSSSMDDEIIAHRLGLIPIKGKPLLENEI---------------ITFTLE- 85
Query: 62 KCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYA 121
+ V ++DLKS + V +I IVKL GQ++++ A
Sbjct: 86 ---KEGPCTVYSSDLKSENGEVA----------------FKNIPIVKLGNGQKIQIECEA 126
Query: 122 KKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEAK 181
G GK HAKW P V Y ++ E + E
Sbjct: 127 VPGIGKVHAKWQPCNAV-------------------------YKQISEDEVE-------- 153
Query: 182 PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
F VE+ G ++ E I+ V +LK K + QL
Sbjct: 154 -----FFVETFGQMEAEEILEEAVKILKNKAESFLQQL 186
>gi|354610855|ref|ZP_09028811.1| DNA-directed RNA polymerase subunit D [Halobacterium sp. DL1]
gi|353195675|gb|EHB61177.1| DNA-directed RNA polymerase subunit D [Halobacterium sp. DL1]
Length = 247
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 92/232 (39%), Gaps = 48/232 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
++I+ V+ NS+V+ DE IA R+GL+PLT T DF +V LD
Sbjct: 43 LSIEDVRFVENSSVMFDEQIALRLGLVPLT--------------TPDDFAVGDTVTLALD 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V AD N + I++L+ Q L A
Sbjct: 89 VEG----PGTAYSGDLVSSDPDV-------EAADKN-------VPIIELKDDQRLEFEAD 130
Query: 121 AKKGFGKEHAKWNPTAGVCFEY--------------DPDNSMRHTLFPKPDEWPKSEYSE 166
A G++HAK V + + D + M + E ++E +
Sbjct: 131 AVLAHGRDHAKHQGGVAVGYRHLQQVDVVGDRGEYADDEPEMIRGVVEDDGELVRTEEFD 190
Query: 167 LDETQH--EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
D T+ E P + F+VES G++ +V+ V L + L+
Sbjct: 191 NDLTERYPEQEVEISDVPGAFVFHVESDGSMPVSELVLRAVDTLVDRADELE 242
>gi|402080745|gb|EJT75890.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 373
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 16/160 (10%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL-TSDEVVDRIL-YSRDCTCVDFCSEC---SV 55
+AI+ V + N++V+ DE +A R+GL+PL S E + R + R F + +V
Sbjct: 91 LAIERVFISNNTSVIQDEVLAQRLGLVPLRGSREGLRRFMRVYRKSEAGAFDNSFDFNTV 150
Query: 56 EFTLDVKCVDDQTRHVTTAD------LKSTDARVVPVTSRNRDADM----NEYGETD-DI 104
L V+C ++ D + AR + + AD G + DI
Sbjct: 151 NLRLSVQCSRNEAAAAGETDPAKLYHHANVYARDIEFLPEGQQADWFSGDGVIGPVNPDI 210
Query: 105 LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
L+ KLR GQ + L +A G+G +HAK++P + P
Sbjct: 211 LLAKLRPGQAIELEMHAHVGYGWDHAKFSPVCTASYRLMP 250
>gi|159116466|ref|XP_001708454.1| DNA-directed RNA polymerase subunit D [Giardia lamblia ATCC 50803]
gi|157436566|gb|EDO80780.1| DNA-directed RNA polymerase subunit D [Giardia lamblia ATCC 50803]
Length = 350
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 118/293 (40%), Gaps = 36/293 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRIL-YSRDCTCVDFCSECSVEFTL 59
MAID V + NS++++DE + R+GL+P+ D R+ Y D + +V F L
Sbjct: 69 MAIDTVVVHENSSIIADEIFSHRLGLVPMNIDP---RLFEYHEDGDKIH--ERNTVVFKL 123
Query: 60 DVKCVDDQTRHVTTAD-----LKSTDARVVPVTSRNR-------DADMNEYGET--DDIL 105
DV + + + S D VP+ + ADM+ DIL
Sbjct: 124 DVTAPATYSSSFNDEEPGWFYVYSRDIYWVPIGGQKDWLLKQEVRADMSSLPAPLDPDIL 183
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSM-RHTLFPKPDEWPKSEY 164
+ KL GQ + Y KG G+ HAK+ P ++ ++ + L P+ +
Sbjct: 184 LAKLAPGQRIFCEIYCHKGIGRMHAKFQPVGTAWYKMKTQIALDKDALLQHPE--VNGDV 241
Query: 165 SELDETQHEA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDR 223
+L H+ P N A + ++E P+ T+ ++ ++ +
Sbjct: 242 DKLVTKLHKVCPVNVFADVTRQ-LDIEDFSVHHPDR--TEACTLCRECIAAFTDEQ---- 294
Query: 224 VFYVINEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
N+ E F +ES + +I + +TV++QK + L++ L
Sbjct: 295 -----NQCGIRLELVKTHLVFTIESCSWYRARDIYLEALTVMQQKAALLKSSL 342
>gi|322693281|gb|EFY85147.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Metarhizium acridum CQMa 102]
Length = 1842
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS--DEVVDRILYSRD--------CTCVDFC 50
+AI+ V +E N++V+ DE +A R+GLIP D + + + + + C D+
Sbjct: 1558 LAIENVYIENNTSVIQDEVLAHRLGLIPFNGGRDGLKNFLKWHKKPEAGEDPYAGCFDWN 1617
Query: 51 SECSVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYG-- 99
+ V L+V C D + A + + D VP T R + E
Sbjct: 1618 T---VRLELNVTCTVNPDAAPDERDPLKAFNNAHVYAKDIVFVP-TGRQVEFFSGEDAIA 1673
Query: 100 -ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI KLR Q + L + KG G +HAK++P A + P
Sbjct: 1674 PVNPDILIAKLRPRQTINLSMHMHKGIGADHAKFSPVATASYRLMP 1719
>gi|302655859|ref|XP_003019711.1| hypothetical protein TRV_06253 [Trichophyton verrucosum HKI 0517]
gi|291183453|gb|EFE39066.1| hypothetical protein TRV_06253 [Trichophyton verrucosum HKI 0517]
Length = 388
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 20/164 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSECSVE--F 57
+AI++V ++ N++V+ DE +A R+GLIPL S E ++ + + + D S + E
Sbjct: 98 LAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSLEGLNWLRWFKIPKEGDPDSGSTHEDSN 157
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADM--------NEYGETD------- 102
T+ ++ V + T++ A D V+ + D+ +Y D
Sbjct: 158 TIVLRLVKECTKNRNAAP-DEEDPTVLYNNAHIYAKDLVFEPQGRQEKYFHGDGVIQPCN 216
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DIL+ KLR GQ++ + + KG G +HAK++P A + PD
Sbjct: 217 PDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPD 260
>gi|154319504|ref|XP_001559069.1| hypothetical protein BC1G_02233 [Botryotinia fuckeliana B05.10]
gi|347842400|emb|CCD56972.1| similar to DNA-directed RNA polymerases I and III subunit RPAC1
[Botryotinia fuckeliana]
Length = 389
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 37/173 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE--VVDRILY-----------SRDCTCV 47
+AI++ ++ N++V+ DE + +R+GL+P + ++D + + R
Sbjct: 102 LAIEYCFVKNNTSVIQDEVLCARLGLVPFKGGKEGLLDFMKWFQKPEEETPEEERHLGSF 161
Query: 48 DFCSECSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGE----- 100
D +++ TL ++C ++ A TD R V + +D + +G
Sbjct: 162 D---HNTIQLTLKIECTRNKE-----AAPGETDPRKVYHNAHVYAKDIEFKPFGRQLEYF 213
Query: 101 ---------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI K+R GQ + + +A KG G++HAK++P A + P
Sbjct: 214 SGENTIKSPNPDILIAKMRPGQVIDIDMHAIKGIGRDHAKFSPVATASYRLLP 266
>gi|326475646|gb|EGD99655.1| DNA-directed RNA polymerase I and III [Trichophyton tonsurans CBS
112818]
gi|326485520|gb|EGE09530.1| DNA-directed RNA polymerase I and III subunit RPAC1 [Trichophyton
equinum CBS 127.97]
Length = 380
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 20/164 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSECSVE--F 57
+AI++V ++ N++V+ DE +A R+GLIPL S E ++ + + + D S + E
Sbjct: 90 LAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSLEGLNWLRWFKIPKEGDPDSGSTHEDSN 149
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADM--------NEYGETD------- 102
T+ ++ V + T++ A D V+ + D+ +Y D
Sbjct: 150 TIVLRLVKECTKNRNAAP-DEEDPTVLYNNAHIYAKDLVFEPQGRQEKYFHGDGVIQPCN 208
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DIL+ KLR GQ++ + + KG G +HAK++P A + PD
Sbjct: 209 PDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPD 252
>gi|15668364|ref|NP_247160.1| DNA-directed RNA polymerase subunit D [Methanocaldococcus
jannaschii DSM 2661]
gi|2500626|sp|Q57648.1|RPOD_METJA RecName: Full=DNA-directed RNA polymerase subunit D
gi|1590937|gb|AAB98172.1| DNA-directed RNA polymerase, subunit D (rpoD) [Methanocaldococcus
jannaschii DSM 2661]
Length = 191
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 35/138 (25%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
AI+ V + NS+ + DE +A R+GLIP+ +++ + + FTL+
Sbjct: 41 FAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLLENEV---------------ITFTLE 85
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ V ++DLKS + V +I IVKL KGQ +++
Sbjct: 86 ----KEGPCTVYSSDLKSENGEVA----------------FKNIPIVKLGKGQRIQIECE 125
Query: 121 AKKGFGKEHAKWNPTAGV 138
A G GK HAKW P V
Sbjct: 126 AIPGIGKVHAKWQPCNAV 143
>gi|448578450|ref|ZP_21643885.1| DNA-directed RNA polymerase subunit D [Haloferax larsenii JCM
13917]
gi|448592478|ref|ZP_21651585.1| DNA-directed RNA polymerase subunit D [Haloferax elongans ATCC
BAA-1513]
gi|445726991|gb|ELZ78607.1| DNA-directed RNA polymerase subunit D [Haloferax larsenii JCM
13917]
gi|445731483|gb|ELZ83067.1| DNA-directed RNA polymerase subunit D [Haloferax elongans ATCC
BAA-1513]
Length = 260
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 31/142 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+I+ V+ N++V+ DE I R+GL+PLT+ +F SV L+
Sbjct: 43 FSIETVRFVENTSVMFDEMIGLRLGLVPLTT-------------PLDEFEPGDSVTVALE 89
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V D + D++S D VVP AD N + I++L++GQ L A
Sbjct: 90 V----DGPATAYSGDIESADDMVVP-------ADEN-------VPIIELKEGQRLEFEAD 131
Query: 121 AKKGFGKEHAKWNPTAGVCFEY 142
A G+GK+HA+ V + +
Sbjct: 132 AVLGYGKDHARNQGGVSVGYRH 153
>gi|291334097|gb|ADD93769.1| putative RNA polymerase Rpb3/Rpb11 dimerisation domain protein
[uncultured marine bacterium MedDCM-OCT-S05-C222]
Length = 310
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 27/140 (19%)
Query: 14 VLSDEFIASRIGLIPLTS--DEVVDRILYSRDC-TCVDF------CSECSVEFTLDVKC- 63
VL DE IA R+ +IP+ + DE +++ DC C D C C V + + +
Sbjct: 66 VLPDEVIAHRLAMIPIPTHPDE---GMMHPDDCPNCKDLAEESKGCMTCQVLYHIRKEGP 122
Query: 64 ---VDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
++ R V DL + ++ + RD E I + L KGQ L L A+
Sbjct: 123 SEDSEETVRTVYAGDLTNISDQMFDI----RD-------EHKRIPLTVLSKGQFLELYAF 171
Query: 121 AKKGFGKEHAKWNPTAGVCF 140
A G G++H+KW+P A V F
Sbjct: 172 ATLGRGRQHSKWSPVAAVGF 191
>gi|335433578|ref|ZP_08558398.1| DNA-directed RNA polymerase subunit D [Halorhabdus tiamatea SARL4B]
gi|334898584|gb|EGM36688.1| DNA-directed RNA polymerase subunit D [Halorhabdus tiamatea SARL4B]
Length = 247
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 90/231 (38%), Gaps = 47/231 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V++ NS+V+ DE I R+GL+PLT+ +F V LD
Sbjct: 42 FSIDTVRVIENSSVMFDEQIGLRLGLVPLTT-------------PVGEFEIGEEVTLALD 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ D + DL D V P D+ I++L+ Q L L A
Sbjct: 89 VEGPD----TAYSGDLVGNDEMVGPAEP--------------DVPIIELKDDQRLELEAD 130
Query: 121 AKKGFGKEHAKWNPTAGVCFEY--------------DPDNSMRHTLFPKPDEWPKSEYSE 166
A G+EHAK V + + D D + + E +E +
Sbjct: 131 AVLDTGREHAKHQGGVAVSYRHLQRVEPQGEREEFADDDAEIVRGVIEDDGELVPTEDFD 190
Query: 167 LDETQH--EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
D T+ + E + + F+VE+ G+ + +V GV L+++ L
Sbjct: 191 HDLTKRYPDTQVEIEDVTDAFVFHVETDGSFDVDTLVKEGVGTLRRRAEEL 241
>gi|327297236|ref|XP_003233312.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
gi|326464618|gb|EGD90071.1| DNA-directed RNA polymerase I and III [Trichophyton rubrum CBS
118892]
Length = 380
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 20/164 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSECSVE--F 57
+AI++V ++ N++V+ DE +A R+GLIPL S E ++ + + + D S + E
Sbjct: 90 LAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSLEGLNWLRWFKIPKEGDPDSGSTHEDSN 149
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADM--------NEYGETD------- 102
T+ ++ V + T++ A D V+ + D+ +Y D
Sbjct: 150 TIVLRLVKECTKNRNAAP-DEEDPTVLYNNAHIYAKDLVFEPQGRQEKYFHGDGVIQPCN 208
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DIL+ KLR GQ++ + + KG G +HAK++P A + PD
Sbjct: 209 PDILLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPD 252
>gi|156368414|ref|XP_001627689.1| predicted protein [Nematostella vectensis]
gi|156214606|gb|EDO35589.1| predicted protein [Nematostella vectensis]
Length = 342
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 118/289 (40%), Gaps = 41/289 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V L N++++ DE +A R+GLIP+ +D R+ + + + ++ F L
Sbjct: 84 MAIEKVFLYNNTSIIQDEVLAHRLGLIPIHADP---RLFNYKKQGDEEAQDDTTLVFELK 140
Query: 61 VKCVDDQT--RHVTTADLKSTDARV-------VPVTSRNRDADMNEYGETDDILIVKLRK 111
VKC+ ++ + T D +++V +P + + + +++
Sbjct: 141 VKCIKNKNAPKDATDPDELYINSKVTTDHLKWIPTPQQAQKFGPQDIRPLSNVVF--FFT 198
Query: 112 GQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQ 171
QEL ++ +A KG GK+HAK++P Y L P E + L +
Sbjct: 199 LQELDIKMHAVKGVGKDHAKFSPVGKSTASY--------RLLP--------EITLLKPCE 242
Query: 172 HEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEA 231
E A + V++ N +G+ L +S Y+
Sbjct: 243 DELADKLAACFSPGVIKVKTVNEKNHTNDQNVGLRSLCNIIS-----------VYISENI 291
Query: 232 PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHEL 280
N + N +VES GAL+PE +V + VL K ++L + +
Sbjct: 292 IRNEFVEKNYTNVSVESIGALRPEVLVCEAIKVLISKCRQFISELDNNM 340
>gi|407929549|gb|EKG22366.1| DNA-directed RNA polymerase 30-40kDa subunit conserved site
[Macrophomina phaseolina MS6]
Length = 377
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 23/166 (13%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSECSVEFT- 58
+AI+ V + N++++ DE +A R+G+IPL S + + + + + + ++
Sbjct: 91 LAIEDVYILKNTSIIQDEVLAHRLGMIPLKGSPKAIQNMTWYKKPESGEAEQGAHTDYNT 150
Query: 59 ----LDVKCV-------------DDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYG-- 99
L+V+C D + + + + + +P T R + E
Sbjct: 151 IVLELNVQCEWHPDGREMAKKGETDPKKLFINSSVYAHQIKFIP-TGRQAELFAGENAIQ 209
Query: 100 -ETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI KLR GQ + L + KG G +HAK++P A + P
Sbjct: 210 PVNPDILIAKLRPGQSINLSMHCIKGIGSDHAKFSPVATATYRLLP 255
>gi|336121979|ref|YP_004576754.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
gi|334856500|gb|AEH06976.1| DNA-directed RNA polymerase [Methanothermococcus okinawensis IH1]
Length = 197
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 60/142 (42%), Gaps = 45/142 (31%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPL-----TSDEVVDRILYSRDCTCVDFCSECSVE 56
AI+ V N++ + DE IA R+GLIP+ ++DEV+ L ++ CV
Sbjct: 42 AIENVYFYENTSSMYDELIAHRLGLIPIKGKPVSNDEVIIFALI-KEGPCV--------- 91
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
V + DL+S VV I IVKL++GQ+L
Sbjct: 92 --------------VYSGDLESETGEVV----------------FKHIPIVKLKEGQKLE 121
Query: 117 LRAYAKKGFGKEHAKWNPTAGV 138
L A G GK HAKW P V
Sbjct: 122 LECEALVGTGKTHAKWQPCNAV 143
>gi|358055076|dbj|GAA98845.1| hypothetical protein E5Q_05533 [Mixia osmundae IAM 14324]
Length = 368
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 24/160 (15%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL-TSDEVVDRILYSRDCTCVDFCSECSVEFTL 59
+AI+ V + N++++ DE ++ R+GL+PL + +D + D D + V F+L
Sbjct: 100 VAIETVFVFNNTSIVQDEVLSQRLGLVPLKINPRQID--FKTPDEGPTDLNT---VVFSL 154
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET---------------DDI 104
KC + R D K D + + + G DDI
Sbjct: 155 LAKC---EHRPGHDPDEKDPDELYIDSNVFSGKLEWKPQGAQESMFDTDATRPRPVQDDI 211
Query: 105 LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
L+ KLR GQ + + + KG GK HAKW+P A + P
Sbjct: 212 LLAKLRPGQTISVELHCNKGNGKTHAKWSPVATASYRLMP 251
>gi|349915757|dbj|GAA27694.1| DNA-directed RNA polymerases I and III subunit RPAC1 [Clonorchis
sinensis]
Length = 483
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 47/178 (26%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDR--ILYSR--------------DC 44
++I+ V L N++V+ DE + R+GLIPL +V R I SR +
Sbjct: 74 ISIERVYLFQNTSVMPDEVLCHRLGLIPLA---IVPRHLIFPSRILPETDELTEFNPMEH 130
Query: 45 TCVDF-----------CSECS-VEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRD 92
DF CSE S EF D+ ++ V +++LK VP+ +
Sbjct: 131 VIFDFKVSFKKSDLKGCSESSGKEFISDLNLPSVRSSAVYSSELKW-----VPLPGQE-- 183
Query: 93 ADMNEYGE------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
+GE + ILI KL G E+ R A KG G++HAK++P A +++ P
Sbjct: 184 ---ELFGEDQPTVVSPHILINKLAVGDEIEARCVAVKGVGRDHAKFSPVAAAYYKFLP 238
>gi|150402492|ref|YP_001329786.1| RNA polymerase insert [Methanococcus maripaludis C7]
gi|150033522|gb|ABR65635.1| RNA polymerase insert [Methanococcus maripaludis C7]
Length = 180
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 64/144 (44%), Gaps = 49/144 (34%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPL-----TSDEVVDRILYSRDCTCVDFCSECSVE 56
AI+ V N++ + DE +A R+GLIP+ + DEV+ + S++ C+
Sbjct: 27 AIENVYFYENTSSMYDEVLAHRLGLIPIKGVPVSGDEVI-VLTISKEGPCM--------- 76
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET--DDILIVKLRKGQE 114
V ++DLKS E GE ++I IVKL +GQ+
Sbjct: 77 --------------VYSSDLKS------------------ESGEPAFENIPIVKLAEGQK 104
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGV 138
L L A A G GK HAKW P V
Sbjct: 105 LELEAEALVGTGKIHAKWQPCNAV 128
>gi|440635104|gb|ELR05023.1| hypothetical protein GMDG_01594 [Geomyces destructans 20631-21]
Length = 375
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 19/163 (11%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE--VVDRILYSRDCTCVDFCSEC----- 53
+AI++V + N++V+ DE +A R+GL+PL +++ + + +
Sbjct: 90 LAIEYVFMNNNTSVIQDEVLAHRLGLVPLKGGRKGLLEFMRWFGKANEEEGTEAGEAFDY 149
Query: 54 -SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGET 101
++ L + C D + + + ++D PV + D
Sbjct: 150 NTITLKLQIACTRNPDAAPGETDSNKLYINSAVHASDIVFEPVGRQPEFFSGDDTITVTN 209
Query: 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI KLR GQ + L +A KG G +HAK++P A + P
Sbjct: 210 PDILIAKLRPGQCIDLDMHAIKGIGADHAKFSPVATASYRLLP 252
>gi|156061627|ref|XP_001596736.1| hypothetical protein SS1G_02959 [Sclerotinia sclerotiorum 1980]
gi|154700360|gb|EDO00099.1| hypothetical protein SS1G_02959 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 387
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 37/173 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDE--VVDRILY-----------SRDCTCV 47
+AI++ ++ N++V+ DE + R+GL+P + ++D + + R
Sbjct: 100 LAIEYCFVKNNTSVIQDEVLCGRLGLVPFKGGKEGLLDFMKWFQKPEEETPEEERHLGSF 159
Query: 48 DFCSECSVEFTLDVKCVDDQTRHVTTADLKST--DARVVPVTSRNRDADMNEYGE----- 100
D +++ +L ++C ++ AD + +A V +D + +G
Sbjct: 160 D---HNTIQLSLKIECTRNKEAAPGEADPRKIYHNAHVYA-----KDIEFKPFGRQLEYF 211
Query: 101 ---------TDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DILI K+R GQ + + +A KG G++HAK++P A + P
Sbjct: 212 SGENAIRSPNPDILIAKMRPGQVIDIDMHAIKGIGRDHAKFSPVATASYRLLP 264
>gi|257053585|ref|YP_003131418.1| RNA polymerase insert [Halorhabdus utahensis DSM 12940]
gi|256692348|gb|ACV12685.1| RNA polymerase insert [Halorhabdus utahensis DSM 12940]
Length = 247
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 88/231 (38%), Gaps = 47/231 (20%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ID V++ NS+V+ DE I R+GL+PLT+ +F V LD
Sbjct: 42 FSIDNVRVIENSSVMFDEQIGLRLGLVPLTT-------------PVGEFEIGDEVTLALD 88
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ D + DL D V P D+ I++L+ Q L L A
Sbjct: 89 VQGPD----TAYSGDLVGNDEMVEPAEP--------------DVPIIELKDDQRLELEAD 130
Query: 121 AKKGFGKEHAKWNPTAGVCFEY--------------DPDNSMRHTLFPKPDEWPKSEYSE 166
A G+EHAK V + + D D + + E +E +
Sbjct: 131 AVLDKGREHAKHQGGVAVSYRHLQRVEPQGEREEFADDDAEIVRGVIEDDGELVPTEDFD 190
Query: 167 LDETQH--EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215
D T + E + + F+VE+ G+ + +V GV L+ + L
Sbjct: 191 HDLTNRYPDTQVEIEDVTDAFVFHVETDGSFDVDTLVKAGVGTLRGRAEEL 241
>gi|302511159|ref|XP_003017531.1| hypothetical protein ARB_04413 [Arthroderma benhamiae CBS 112371]
gi|291181102|gb|EFE36886.1| hypothetical protein ARB_04413 [Arthroderma benhamiae CBS 112371]
Length = 362
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 20/164 (12%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRILYSRDCTCVDFCSECSVE--F 57
+AI++V ++ N++V+ DE +A R+GLIPL S E ++ + + + D S + E
Sbjct: 72 LAIEYVYIQNNTSVIQDEVLAHRLGLIPLKGSLEGLNWLRWFKIPKEGDPDSGSTHEDSN 131
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADM--------NEYGETD------- 102
T+ ++ V + T++ +A D V+ + D+ +Y D
Sbjct: 132 TIVLRLVKECTKNRNSAP-DEEDPTVLYNNAHIYAKDLVFEPQGRQEKYFHGDGVIQPCN 190
Query: 103 -DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
D L+ KLR GQ++ + + KG G +HAK++P A + PD
Sbjct: 191 PDTLLAKLRPGQKIDIEMHCIKGIGADHAKFSPVATASYRLLPD 234
>gi|300708874|ref|XP_002996608.1| hypothetical protein NCER_100268 [Nosema ceranae BRL01]
gi|239605923|gb|EEQ82937.1| hypothetical protein NCER_100268 [Nosema ceranae BRL01]
Length = 293
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 32/147 (21%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSV---EF 57
AI+ V + N++VL DEF+A R+GLIPL D C + V F
Sbjct: 68 FAIENVFIFDNTSVLPDEFLAHRLGLIPL------------------DVCPDLEVGDFHF 109
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
L + VT+ D+K P D ++++ DI I KL Q L +
Sbjct: 110 ELKKTNTSSEVMTVTSNDIKYIKKDGQP------DIEISK-----DIPIAKLAPKQALII 158
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDP 144
A K G+ HAKW+P + P
Sbjct: 159 EMVACKNVGRVHAKWSPVCTAAYRLMP 185
>gi|320591803|gb|EFX04242.1| DNA-directed RNA polymerase 1 and 3 subunit [Grosmannia clavigera
kw1407]
Length = 376
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 74/169 (43%), Gaps = 30/169 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS--DEVVDRILYSR----DCTCVDFCSEC- 53
+AI+ ++ N++V+ DE +A R+GLIP T D + + I + + D +F
Sbjct: 91 VAIETAYIDNNTSVIQDEVLAHRLGLIPFTGGYDGLRNFIKWWKRPGPDADPNEFPPSFD 150
Query: 54 --SVEFTLDVKCV---------DDQTRHVTTADLKSTDARVVP-------VTSRNRDADM 95
+++ L V+C D + A + + D VP + N +
Sbjct: 151 YNTIKLKLQVECTRNRSAAPGETDPLKLYHNAHVYARDIEFVPEGNQPSVFSGENAIRPV 210
Query: 96 NEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
N DIL+ KLR GQ + + + KG G +HAK++P + P
Sbjct: 211 NP-----DILVAKLRPGQAIDIEMHMHKGIGSDHAKFSPVCTASYRLLP 254
>gi|452979634|gb|EME79396.1| hypothetical protein MYCFIDRAFT_216428 [Pseudocercospora fijiensis
CIRAD86]
Length = 392
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 79/190 (41%), Gaps = 45/190 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTS-----------------DEVVDRILYSRD 43
+AI+ V + N++++ DE +A R+GLIPLT + R L+ ++
Sbjct: 92 LAIEDVFIFDNTSIIQDEVLAHRLGLIPLTGGKDGLRWMHWFKKPPPQSDYAARALWEQE 151
Query: 44 CT-CVDFCSECSVEF-----TLDVKCV-----DDQTRHVTTADLKSTDARVVPVTSRNRD 92
D S + +F TL+V C +D A STD V S
Sbjct: 152 QEESGDTSSSVNSDFNTVVMTLNVTCRWKNKEEDGIDGKKVAQEGSTDPTEKYVNSNVYA 211
Query: 93 ADMN---------EY--GET------DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 135
M EY GE +ILI KLR GQ + +R + KG G +HAK++P
Sbjct: 212 HQMTFEPQGKLQREYFGGENAIRPVNPNILIAKLRPGQTINVRMHCCKGIGADHAKFSPV 271
Query: 136 AGVCFEYDPD 145
A + PD
Sbjct: 272 ATASYRLLPD 281
>gi|448306201|ref|ZP_21496110.1| DNA-directed RNA polymerase subunit D [Natronorubrum bangense JCM
10635]
gi|445598615|gb|ELY52670.1| DNA-directed RNA polymerase subunit D [Natronorubrum bangense JCM
10635]
Length = 249
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 91/232 (39%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+ NS+V+ DE +A R+GL+PLT+ +F + +V ++D
Sbjct: 43 LAIDTVRFIENSSVMFDEQLALRLGLVPLTT------------PPEAEFAEDDTVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V P AD N I I+ L+ Q L A
Sbjct: 91 VEG----PATAYSGDLVSSDDLVQP-------ADEN-------IPIIDLKDNQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVC---------------FEYDPDNSMRHTLFPKPDEWPKSEY- 164
A GK HAK FE +R + + SE+
Sbjct: 133 AVFNRGKNHAKHQGAVSAGYRHLQRVTVVDDLPEFEEQESRIIRGVIEADGELIQTSEFD 192
Query: 165 SELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
++L E PN + FN+E+ G+ + +V + + ++L+
Sbjct: 193 NDLSNRYPGKQVEVEDVPNAFVFNIETDGSFPVDELVTRAADSIAARATDLE 244
>gi|134045316|ref|YP_001096802.1| DNA-directed RNA polymerase subunit D [Methanococcus maripaludis
C5]
gi|132662941|gb|ABO34587.1| DNA-directed RNA polymerase, subunit D [Methanococcus maripaludis
C5]
Length = 180
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 49/144 (34%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPL-----TSDEVVDRILYSRDCTCVDFCSECSVE 56
AI+ V N++ + DE +A R+GL+P+ + DEV+ + S++ C+
Sbjct: 27 AIENVYFYENTSSMYDEVLAHRLGLVPIKGVPVSGDEVI-VLTISKEGPCM--------- 76
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET--DDILIVKLRKGQE 114
V ++D+KS E GE ++I IVKL +GQ+
Sbjct: 77 --------------VYSSDIKS------------------ESGEPAFENIPIVKLAEGQK 104
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGV 138
L L A A G GK HAKW P V
Sbjct: 105 LELEAEALVGTGKIHAKWQPCNAV 128
>gi|150399384|ref|YP_001323151.1| RNA polymerase insert [Methanococcus vannielii SB]
gi|150012087|gb|ABR54539.1| RNA polymerase insert [Methanococcus vannielii SB]
Length = 195
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 45/138 (32%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPL-----TSDEVVDRILYSRDCTCVDFCSECSVE 56
AI+ V N++ + DE +A R+GLIP+ + DEVV L S++ C
Sbjct: 42 AIENVYFYENTSSMYDEVLAHRLGLIPVKGVPVSGDEVVVFTL-SKEGPCT--------- 91
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELR 116
V ++DLKS + ++I IVKL +GQ+L
Sbjct: 92 --------------VYSSDLKSEAGEIA----------------FENIPIVKLAEGQKLE 121
Query: 117 LRAYAKKGFGKEHAKWNP 134
A A G GK HAKW P
Sbjct: 122 FEAEALVGTGKFHAKWQP 139
>gi|449017050|dbj|BAM80452.1| RNA polymerase I, III common subunit [Cyanidioschyzon merolae
strain 10D]
Length = 383
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 64/207 (30%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI++V + NSTV++DEF+A R+GL+P+ +D R + R+ + ++ ++ F L
Sbjct: 61 MAIEYVTVNENSTVMNDEFLAHRLGLVPVLADP--RRFEFRRESD--EPSAQNTICFRLR 116
Query: 61 VKCV------------------DD-----------------QTRHVTTADLKSTDARVVP 85
V V DD QTR V + L ST+
Sbjct: 117 VPPVNRKAHPEWNLSDGAVFAGDDAVPSIPVYSDDIIWEQLQTR-VGESCLSSTEG---- 171
Query: 86 VTSRNRDADMNEYGETDDILI-----------VKLRKG---------QELRLRAYAKKGF 125
+ +D + E D L V++++G Q L +R A KG
Sbjct: 172 ASPHRSSSDAQQQAEATDGLASAADSTAAVEPVQVQRGILLTKMLRGQRLDIRMEAVKGL 231
Query: 126 GKEHAKWNPTAGVCFEYDPDNSMRHTL 152
G +HAKW+P A ++ P ++ L
Sbjct: 232 GHDHAKWSPVATAYYKMVPRVHLKGEL 258
>gi|170579941|ref|XP_001895048.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Brugia malayi]
gi|158598143|gb|EDP36103.1| RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
[Brugia malayi]
Length = 339
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 105/245 (42%), Gaps = 36/245 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AI+ V L N++++ DE ++ R GL+P+ +D + ++ +R + +CS E
Sbjct: 93 LAIEKVYLYQNTSIIPDEVLSHRFGLLPIKADPRLFKMPLTRVIGIDESGVDCSEE---- 148
Query: 61 VKCVDDQTRHVTTADLK---STDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
D TR++ ++K S + + + ++ N + ++ + + Q L
Sbjct: 149 --PAGDPTRNLIF-EIKVNCSRNPNALKTATNPKEIYENAFVYSNSFKWIPI-GDQSTSL 204
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSE----------- 166
+ KG G++HAK++P A + P ++ KS +SE
Sbjct: 205 PCHCLKGLGRDHAKFSPVATASYRLLPQIVLKKKFSGADARRVKSSFSEGVIEIDADGVA 264
Query: 167 -------------LDETQHEAPYNWEAKPNKYF-FNVESAGALKPENIVIMGVTVLKQKL 212
+ + A Y ++ +F F+VES GAL+ +V+ V+++K
Sbjct: 265 FVKDARSDTCSRNILRYEDLAEYIELSRIKDHFIFSVESTGALRSAELVVEACKVMEEKC 324
Query: 213 SNLQT 217
LQ+
Sbjct: 325 RTLQS 329
>gi|448303016|ref|ZP_21492966.1| DNA-directed RNA polymerase subunit D [Natronorubrum sulfidifaciens
JCM 14089]
gi|445594023|gb|ELY48190.1| DNA-directed RNA polymerase subunit D [Natronorubrum sulfidifaciens
JCM 14089]
Length = 249
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 91/232 (39%), Gaps = 46/232 (19%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+ NS+V+ DE +A R+GL+PLT+ +F +V ++D
Sbjct: 43 LAIDTVRFIENSSVMFDEQLALRLGLVPLTT------------PPEAEFAEGDTVTLSID 90
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+ + DL S+D V P AD N + I+ L+ Q L A
Sbjct: 91 VEG----PATAYSGDLVSSDDLVQP-------ADEN-------VPIIDLKDDQRLEAEAD 132
Query: 121 AKKGFGKEHAKWNPTAGVCFEY---------DPDNSMRHTLFPKPDEWPKSEYSELDETQ 171
A GK HAK + + P+ + + + E + E
Sbjct: 133 AVFNRGKNHAKHQGAVSAGYRHLQRVEVVDDLPEFEEQESRIIRGVIEADGELIQTSEFD 192
Query: 172 HEAPYNWEAK-------PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
H+ + K PN + FN+E+ G+ + +V ++ + + L+
Sbjct: 193 HDLSNRYPGKQVEIEDVPNAFVFNIETDGSFPVDELVTRAADSIEARAAELE 244
>gi|159905734|ref|YP_001549396.1| RNA polymerase insert [Methanococcus maripaludis C6]
gi|159887227|gb|ABX02164.1| RNA polymerase insert [Methanococcus maripaludis C6]
Length = 180
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 63/144 (43%), Gaps = 49/144 (34%)
Query: 2 AIDWVQLEANSTVLSDEFIASRIGLIPL-----TSDEVVDRILYSRDCTCVDFCSECSVE 56
AI+ V N++ + DE +A R+GLIP+ + DEV+ + S++ C+
Sbjct: 27 AIENVYFYENTSSMYDEVLAHRLGLIPIKGVPVSGDEVI-VLTISKEGPCM--------- 76
Query: 57 FTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET--DDILIVKLRKGQE 114
V ++D+KS E GE ++I IVKL +GQ+
Sbjct: 77 --------------VYSSDIKS------------------ESGEPAFENIPIVKLAEGQK 104
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGV 138
L L A G GK HAKW P V
Sbjct: 105 LELETEALVGTGKIHAKWQPCNAV 128
>gi|269986616|gb|EEZ92898.1| RNA polymerase insert [Candidatus Parvarchaeum acidiphilum ARMAN-4]
Length = 248
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 33/144 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+ I+ V++ N++ + DE +ASR+GLIP+ T ++ + F L
Sbjct: 39 LTIEDVKIYKNTSFMYDEILASRLGLIPIK--------------TPIELKGKGKFSFKLK 84
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ + V +DL +D VVP S D+LI+ L+ G+ + L A
Sbjct: 85 ----EMGPKAVHASDLVPSDKDVVPAIS--------------DMLIINLKDGEAIDLEAE 126
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDP 144
G G +H+K+ P A V + + P
Sbjct: 127 TAWGNGADHSKFTP-AHVFYHFYP 149
>gi|398398399|ref|XP_003852657.1| hypothetical protein MYCGRDRAFT_109462 [Zymoseptoria tritici
IPO323]
gi|339472538|gb|EGP87633.1| hypothetical protein MYCGRDRAFT_109462 [Zymoseptoria tritici
IPO323]
Length = 474
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 30/148 (20%)
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE---- 158
DILI KLR GQ + LR + KG G +HAK++P A + P ++ + + +
Sbjct: 240 DILIAKLRPGQRIHLRVHCIKGIGADHAKFSPVATASYRLLPQIDIKSPITGQSAKAFQK 299
Query: 159 -WPKSEYS-ELDETQHEA------PY---------NWEAKPNK---------YFFNVESA 192
+P+ E DE E P+ ++ NK + F++ES
Sbjct: 300 CFPRGVIGIEHDEALGEKKAVVKDPFKDTVSRECLRYDEFKNKVKLGRIRDHFIFSIEST 359
Query: 193 GALKPENIVIMGVTVLKQKLSNLQTQLA 220
G L+ + + + V +LK K + LA
Sbjct: 360 GQLESDELFLDSVRLLKAKSERFKRHLA 387
>gi|453085895|gb|EMF13938.1| DNA-directed RNA polymerases I and III 40 kDa polypeptide
[Mycosphaerella populorum SO2202]
Length = 393
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 30/147 (20%)
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL---------- 152
DILI KLR GQ + + + KG G +HAK++P A + PD + +
Sbjct: 240 DILIAKLRPGQRIHMTMHCVKGIGADHAKFSPVATASYRLLPDIKITQPIVGADAKAFQK 299
Query: 153 -FPKP----DEWPKSEYSEL-------DETQHEAPYNWEAKP--------NKYFFNVESA 192
FPK +E P+S D E E K + + F++ES+
Sbjct: 300 CFPKGVIGLEEDPESGEKRAVVKDPFKDTVSRECLRYDEFKDKVKLGRIRDHFIFSMESS 359
Query: 193 GALKPENIVIMGVTVLKQKLSNLQTQL 219
G + + I + VLKQK + + L
Sbjct: 360 GQFDSDELFIDSIRVLKQKATTFKKHL 386
>gi|164661059|ref|XP_001731652.1| hypothetical protein MGL_0920 [Malassezia globosa CBS 7966]
gi|159105553|gb|EDP44438.1| hypothetical protein MGL_0920 [Malassezia globosa CBS 7966]
Length = 213
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 31/145 (21%)
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEW-PK 161
DI+I KL GQ + + + +KG GK+HAK++P A + P + L P P+ PK
Sbjct: 63 DIVIAKLAPGQGMEMELHCEKGIGKDHAKFSPVATATYRLLP---LIEILKPIPEPLIPK 119
Query: 162 --SEYSE--LDETQHEAPYNWEAKP-----------------------NKYFFNVESAGA 194
S + E + + Y +A+ + + F+VES G
Sbjct: 120 FISCFPEGVIHKGGENGVYVADARKDTVTREVLRYPEFEGYVRLGRIQDHFLFSVESTGV 179
Query: 195 LKPENIVIMGVTVLKQKLSNLQTQL 219
+PE+++ + VL++K++ L+ L
Sbjct: 180 YEPEDLLPASIEVLRKKIALLKLAL 204
>gi|296109380|ref|YP_003616329.1| RNA polymerase insert [methanocaldococcus infernus ME]
gi|295434194|gb|ADG13365.1| RNA polymerase insert [Methanocaldococcus infernus ME]
Length = 195
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 39/140 (27%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
AI+ V + NS+ + DE +A R+GLIP+ F +E ++ FTL+
Sbjct: 41 FAIEDVFIYENSSSMDDEILAHRLGLIPIKGKPA--------------FENE-TILFTLE 85
Query: 61 VK--CVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLR 118
+ CV V ++DLKS + V +I IVKL + Q +++
Sbjct: 86 KEGPCV------VYSSDLKSDNGEVA----------------FKNIPIVKLGEKQRIKIE 123
Query: 119 AYAKKGFGKEHAKWNPTAGV 138
A G GK HAKW P V
Sbjct: 124 CEAVPGIGKVHAKWQPCNAV 143
>gi|290559364|gb|EFD92697.1| RNA polymerase insert [Candidatus Parvarchaeum acidophilus ARMAN-5]
Length = 247
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 35/145 (24%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL-TSDEVVDRILYSRDCTCVDFCSECSVEFTL 59
+AID V + N++ + DE +A+R+GLIP+ T EV + +F L
Sbjct: 38 LAIDDVTIYKNTSSMFDEVLAARLGLIPIKTPIEVKGK-----------------GKFLL 80
Query: 60 DVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRA 119
+K + + H +DL S+D VVP ++LI+ L+ G+ L L A
Sbjct: 81 KLKEMGPKAVH--ASDLVSSDKDVVPAIP--------------EMLIINLKDGESLELEA 124
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDP 144
G G H K+ P A V + + P
Sbjct: 125 ETTWGNGAIHTKFTP-AHVYYHFYP 148
>gi|430813139|emb|CCJ29483.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 578
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 25/169 (14%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSEC------- 53
+AI++V + N++++ DE +A R+GLIP+ ++ S F
Sbjct: 27 IAIEYVFVNNNTSIIQDEILAQRLGLIPIKANPDFFTWFTSNYFPIFFFILNIKEPDANQ 86
Query: 54 --------SVEFTLDVKCVD---------DQTRHVTTADLKSTDARVVPVTSR-NRDADM 95
+V +L V C D + +++ S D + P + D
Sbjct: 87 EPRPTDYDTVVLSLKVACTKNPKASENERDPEKLYINSNVYSGDIQWQPAGRQIELFKDD 146
Query: 96 NEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
D ILI KLR GQE+ + + G G++HAK++P + + P
Sbjct: 147 PIKAVHDKILIAKLRPGQEIDVTMHCILGIGQDHAKFSPVSTSSYRLLP 195
>gi|255513546|gb|EET89812.1| RNA polymerase insert [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 191
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 33/149 (22%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
AID V + N++ + DE+IA RIGL+PL + S D + F E + T+
Sbjct: 39 FAIDKVTVYENTSSMFDEYIAHRIGLVPLITPH------GSSDKDEILFTLEAAGPGTIY 92
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
K ++ + V A+ +I I+KL + Q++R+
Sbjct: 93 SKSLESSDKSVVVAN--------------------------PNIPIIKLGRDQKIRIEGK 126
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMR 149
A G +HAK+ P V +E D+ +
Sbjct: 127 AVMGSALKHAKFQPGL-VTYEATADDEFK 154
>gi|402217101|gb|EJT97183.1| hypothetical protein DACRYDRAFT_59476 [Dacryopinax sp. DJM-731 SS1]
Length = 257
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 37/150 (24%)
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKS 162
DI++VKLR+GQEL + + K G++HAK++P A P +F E ++
Sbjct: 77 DIILVKLRRGQELNIEMHCVKSCGRDHAKYSPVATATSRLLPYVR----IFKSIPEQLQA 132
Query: 163 EYSE-----LDETQHEAPYNWEA----------------------------KPNKYFFNV 189
++++ + ++ + WE +++ F V
Sbjct: 133 KFTQSFSPGVIGSRRNKQWEWEVFVKDARKDTMSRNVFLYPEFEGAVKLTRVRDRFLFTV 192
Query: 190 ESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
ESAG + P I+ + V +KL + L
Sbjct: 193 ESAGQMAPNAILPEAIAVFTRKLRTVSKAL 222
>gi|385804352|ref|YP_005840752.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi C23]
gi|339729844|emb|CCC41127.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi C23]
Length = 262
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 97/248 (39%), Gaps = 59/248 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+I+ V+ NS+V+ DE I R+GL+PLT+ DF +V +LD
Sbjct: 45 FSIEDVRFVENSSVMFDEMIGLRLGLVPLTT-------------PVDDFDIGDTVTLSLD 91
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ QT + + D+ S+D V P AD N I I++L++ L L A
Sbjct: 92 ITG--PQTAY--SGDIVSSDRLVEP-------ADEN-------IPIIELKENHRLELEAD 133
Query: 121 AKKGFGKEHAKWNPTAGVCFEY----------------DP--------DNSMRHTL---F 153
A GK HAK V + + DP + + H +
Sbjct: 134 AVLDTGKSHAKQQGGVAVGYRHLQRIEVIGDADEFADEDPHILRGVIEEGAAAHAVDETA 193
Query: 154 PKPDEWPKSEY-SELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKL 212
D P +E+ ++L PN F+VE+ G+ +V L +
Sbjct: 194 TNGDLIPTTEFDNDLTNRYPGKELTVSDVPNAVVFHVETDGSFSVPELVERAARSLGDRA 253
Query: 213 SNLQTQLA 220
+ L+T++A
Sbjct: 254 AELETKVA 261
>gi|110668834|ref|YP_658645.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi DSM
16790]
gi|109626581|emb|CAJ53045.1| DNA-directed RNA polymerase subunit D [Haloquadratum walsbyi DSM
16790]
Length = 262
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 97/248 (39%), Gaps = 59/248 (23%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+I+ V+ NS+V+ DE I R+GL+PLT+ DF +V +LD
Sbjct: 45 FSIEDVRFVENSSVMFDEMIGLRLGLVPLTT-------------PVDDFDIGDTVTLSLD 91
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ QT + + D+ S+D V P AD N I I++L++ L L A
Sbjct: 92 ITG--PQTAY--SGDIVSSDRLVEP-------ADEN-------IPIIELKENHRLELEAD 133
Query: 121 AKKGFGKEHAKWNPTAGVCFEY----------------DP--------DNSMRHTL---F 153
A GK HAK V + + DP + + H +
Sbjct: 134 AVLDTGKSHAKQQGGVAVGYRHLQRIEVIGDADEFADEDPHILRGVIEEGAATHAVDETA 193
Query: 154 PKPDEWPKSEY-SELDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKL 212
D P +E+ ++L PN F+VE+ G+ +V L +
Sbjct: 194 TNGDLIPTTEFDNDLTNRYPGKELTVSDVPNAVVFHVETDGSFSVPELVERAARSLGDRA 253
Query: 213 SNLQTQLA 220
+ L+T++A
Sbjct: 254 AELETKVA 261
>gi|268324993|emb|CBH38581.1| putative DNA-directed RNA polymerase, subunit D [uncultured
archaeon]
Length = 213
Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 28/160 (17%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD----EVVDRILYSRDCTCVDFCSECSV- 55
+AID + + N+++L DE +A R+ L+PL +D + D+I + T + V
Sbjct: 39 LAIDELNIRENTSLLYDEQLALRLALVPLKTDLKDYKEEDQITLTLKATSPEKAGHTMVY 98
Query: 56 --EFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQ 113
E V+ + ++ L ST+ + + + R Q
Sbjct: 99 SKELISSYPKVEAASENIPIVKLISTEREIGAIKTVAR---------------------Q 137
Query: 114 ELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF 153
++ L A A+ G G+EHAKW P ++ D + + LF
Sbjct: 138 KIDLDAIARWGRGEEHAKWQPVTICGYKNISDEDVNNLLF 177
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,485,422,561
Number of Sequences: 23463169
Number of extensions: 183899719
Number of successful extensions: 401005
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 397532
Number of HSP's gapped (non-prelim): 2224
length of query: 287
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 146
effective length of database: 9,050,888,538
effective search space: 1321429726548
effective search space used: 1321429726548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)