Query psy5332
Match_columns 287
No_of_seqs 222 out of 1023
Neff 7.2
Searched_HMMs 13730
Date Fri Aug 16 23:55:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5332.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5332hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1twfc2 d.181.1.1 (C:42-172) R 100.0 9.7E-46 7E-50 299.9 11.6 128 1-134 3-131 (131)
2 d1twfc1 d.74.3.1 (C:3-41,C:173 99.5 1.4E-14 1E-18 114.8 7.6 85 137-221 42-131 (135)
3 d1twfc1 d.74.3.1 (C:3-41,C:173 99.2 9.5E-12 6.9E-16 98.2 7.9 51 231-281 84-134 (135)
4 d1bdfa1 d.74.3.1 (A:2-52,A:179 98.9 1.1E-09 8.4E-14 83.1 8.3 88 99-215 7-104 (105)
5 d1smya1 d.74.3.1 (A:1-49,A:173 98.5 1.2E-07 8.4E-12 71.7 7.0 86 102-216 9-103 (106)
6 d1bdfa2 d.181.1.1 (A:53-178) R 98.2 2.9E-06 2.1E-10 65.9 8.4 59 53-130 44-103 (126)
7 d1smya2 d.181.1.1 (A:50-172) R 98.1 9.3E-07 6.8E-11 68.5 4.1 58 54-130 47-104 (123)
8 d1bdfa1 d.74.3.1 (A:2-52,A:179 91.5 0.068 5E-06 39.1 3.5 34 237-270 69-102 (105)
9 d1smya1 d.74.3.1 (A:1-49,A:173 89.6 0.22 1.6E-05 36.3 4.8 35 237-271 67-101 (106)
10 d1twfk_ d.74.3.2 (K:) RPB11 {B 85.1 1.1 8E-05 32.6 6.5 45 237-281 66-110 (114)
11 d1xppa_ d.74.3.2 (A:) DNA-dire 84.6 0.88 6.4E-05 32.3 5.7 44 237-281 50-93 (99)
12 d1twfk_ d.74.3.2 (K:) RPB11 {B 81.5 1.2 9E-05 32.4 5.5 41 182-222 68-108 (114)
13 d1xppa_ d.74.3.2 (A:) DNA-dire 80.2 1.1 8.1E-05 31.7 4.7 40 182-222 52-91 (99)
14 d1f6fb2 b.1.2.1 (B:101-203) Pr 32.5 16 0.0012 24.2 3.1 35 102-137 65-99 (103)
15 d2nn6b2 d.101.1.1 (B:151-240) 31.9 34 0.0024 22.5 4.8 41 242-283 44-84 (90)
16 d2je6b2 d.101.1.1 (B:156-241) 30.5 48 0.0035 21.5 5.4 42 242-284 44-85 (86)
17 d1lb2b_ a.60.3.1 (B:) C-termin 29.5 0.69 5E-05 31.1 -4.7 27 235-261 4-30 (72)
18 d1pk6b_ b.22.1.1 (B:) Compleme 26.2 53 0.0038 22.8 5.3 40 103-144 92-131 (132)
19 d2vmha1 b.18.1.33 (A:906-1050) 24.7 54 0.0039 24.0 5.2 26 108-133 114-140 (145)
20 d1pk6c_ b.22.1.1 (C:) Compleme 23.3 62 0.0045 22.4 5.2 25 103-127 89-113 (129)
21 d1qcsa1 b.52.2.3 (A:0-85) N-te 20.7 21 0.0015 24.0 1.8 29 239-270 43-71 (86)
22 d1tena_ b.1.2.1 (A:) Tenascin 20.3 42 0.0031 21.2 3.4 26 102-127 55-80 (90)
23 d1z3eb1 a.60.3.1 (B:245-311) C 20.1 1.2 8.7E-05 29.4 -4.9 25 237-261 7-31 (67)
No 1
>d1twfc2 d.181.1.1 (C:42-172) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=9.7e-46 Score=299.93 Aligned_cols=128 Identities=48% Similarity=0.763 Sum_probs=110.1
Q ss_pred CeeeEEEEeeCCCcchhhHhhhhcCccccccccccccceeccCCCCCCCCCCceEEEEEEEEeeCCCCceeEeCCceeCC
Q psy5332 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLDVKCVDDQTRHVTTADLKSTD 80 (287)
Q Consensus 1 lAId~V~i~~NtSvl~DE~lAHRLGLIPl~s~~~~~~~~~~~~c~~~~~c~~ctv~~~L~v~~~~~~~~~V~s~Dl~s~d 80 (287)
||||.|+|++|||+|+|||||||||||||.+++ .+.|.|.++|.|++.|+.|+|+|+|+|+|+++++..|||+||++.+
T Consensus 3 lAid~V~I~~NTS~l~DE~iaHRLglIPi~~~~-~~~~~~~~~~~~~~~~~~~~v~~~L~v~~~~~~~~~V~s~Dl~~~~ 81 (131)
T d1twfc2 3 LAIDSVEVETNTTVLADEFIAHRLGLIPLQSMD-IEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVS 81 (131)
T ss_dssp EEEEEEEEEEECSSSCHHHHHHHHHTSCEEETT-GGGSCCTTTSSSSSCCTTTEEEEEEEEECCSSSCEEEEGGGEEECS
T ss_pred EEEEEEEEEECCcccchHHHHHhhcCceeeccC-hhhccccccccccCCCCCceEEEEeEcccCCCCCceEEhhheEEcC
Confidence 799999999999999999999999999999876 4789999999999999999999999999999999999999998654
Q ss_pred C-eeeeccCCCcccCCCCCCCCCCeEEEEeCCCCEEEEEEEEEeccccccceecc
Q psy5332 81 A-RVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNP 134 (287)
Q Consensus 81 ~-~v~P~~~~~~~~~~~~~~~~~dI~I~kL~pGQ~I~le~~a~kGiGk~HAKwsP 134 (287)
. .+.+... +......+++|+|+||+|||+|+|+|+|+||+||+||||||
T Consensus 82 ~~~~~~~~~-----~~~~~~~~~~IlI~kL~pGQ~i~l~a~a~kG~Gk~HAK~sP 131 (131)
T d1twfc2 82 NLMGRNIGH-----PIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGP 131 (131)
T ss_dssp CCTTCSEEE-----ECCCSTTSCCSEEEEECTTCEEEEEEEEEEECTTTCGGGCC
T ss_pred CccccccCC-----ccccCCcCCCCEEEEeCCCCEEEEEEEEEecccccCcEeCc
Confidence 2 1111110 00111346899999999999999999999999999999998
No 2
>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.50 E-value=1.4e-14 Score=114.76 Aligned_cols=85 Identities=29% Similarity=0.694 Sum_probs=74.4
Q ss_pred eeeeeecCCCCcccccCCC----CCCCCCCccCccccccc-CCCCCcccCCCcEEEEeecCCccCHHHHHHHHHHHHHHH
Q psy5332 137 GVCFEYDPDNSMRHTLFPK----PDEWPKSEYSELDETQH-EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQK 211 (287)
Q Consensus 137 ~~~y~~~P~i~i~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~fif~VEs~G~l~p~~iv~~A~~iLk~K 211 (287)
.+.|+|+|.+.++|+.+|- .++||.+.+++..+... ..+|+...++|+|+|+|||+|+++|+++|.+|+++|++|
T Consensus 42 ~v~feyDp~N~lrHtdyw~e~~~~~ewP~s~~~~~e~~~~e~e~fd~~akpd~F~f~VEs~G~l~p~~Iv~~ai~iL~~K 121 (135)
T d1twfc1 42 AIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKK 121 (135)
T ss_dssp EEEEEECSSTTSCCSCCCCSSCHHHHSCCCGGGTTSCCCCSSSCCCTTCCCCCEEEEEEECSSSCHHHHHHHHHHHHHHH
T ss_pred heeeeecccccccceeecccCCccccCCcccCCCCCCCcccccCCCCCCCCCEEEEEEEeccCCCHHHHHHHHHHHHHHH
Confidence 3779999999999999863 46799998887766543 347999999999999999999999999999999999999
Q ss_pred HHHHHHhhhc
Q psy5332 212 LSNLQTQLAH 221 (287)
Q Consensus 212 l~~l~~~l~~ 221 (287)
|..|...|+.
T Consensus 122 l~~l~~~L~~ 131 (135)
T d1twfc1 122 VASILLALTQ 131 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988865
No 3
>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.23 E-value=9.5e-12 Score=98.25 Aligned_cols=51 Identities=24% Similarity=0.615 Sum_probs=47.7
Q ss_pred CCCCcccCCCeEEEEEeecCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy5332 231 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELS 281 (287)
Q Consensus 231 ~~i~~~~~~d~f~f~veS~g~l~~~~i~~~a~~~l~~k~~~l~~~l~~~~~ 281 (287)
+.++.+.++|+|+|+|||+|+|+|++|+.+|+++|++||..|+.+|+++.|
T Consensus 84 e~fd~~akpd~F~f~VEs~G~l~p~~Iv~~ai~iL~~Kl~~l~~~L~~~dq 134 (135)
T d1twfc1 84 DPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQ 134 (135)
T ss_dssp SCCCTTCCCCCEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCCCCEEEEEEEeccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 358899999999999999999999999999999999999999999988654
No 4
>d1bdfa1 d.74.3.1 (A:2-52,A:179-232) RNA polymerase alpha {Escherichia coli [TaxId: 562]}
Probab=98.94 E-value=1.1e-09 Score=83.08 Aligned_cols=88 Identities=14% Similarity=0.303 Sum_probs=69.5
Q ss_pred CCCCCeEEEEeCCCCEEEEEEE-EEeccccccc---------eecccceeeeeecCCCCcccccCCCCCCCCCCccCccc
Q psy5332 99 GETDDILIVKLRKGQELRLRAY-AKKGFGKEHA---------KWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELD 168 (287)
Q Consensus 99 ~~~~dI~I~kL~pGQ~I~le~~-a~kGiGk~HA---------KwsPV~~~~y~~~P~i~i~~~~~~~~~~~~~~~~~~~~ 168 (287)
.++|+..++...-+-..++.+. ..+|.|+.-+ -|+||+.++|+.++.
T Consensus 7 il~P~~v~i~~~~~~~~k~~~eplErG~Gyt~gn~lr~~llSs~sPV~~V~y~Ve~~----------------------- 63 (105)
T d1bdfa1 7 FLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRAILLSSMPPVERIAYNVEAA----------------------- 63 (105)
T ss_dssp SCCCCEEEEEESSSSEEEEEEEEEETTHHHHHHHHHHHHHTTSCCSEEEEEEECCBC-----------------------
T ss_pred hcCCCEEEEEecCCceEEEEEEEccCCcccccccccchhhhhcccceeEEEEeeeee-----------------------
Confidence 4568876565555556777774 6899998764 599999999998753
Q ss_pred ccccCCCCCcccCCCcEEEEeecCCccCHHHHHHHHHHHHHHHHHHH
Q psy5332 169 ETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNL 215 (287)
Q Consensus 169 ~~~~~~~~~~~~~~d~fif~VEs~G~l~p~~iv~~A~~iLk~Kl~~l 215 (287)
+.....+.++++++|||+|+++|++++..|+++|.+++..|
T Consensus 64 ------~~e~~td~d~L~lei~TnGsi~p~eA~~~Aa~il~~~~~~f 104 (105)
T d1bdfa1 64 ------RVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAF 104 (105)
T ss_dssp ------CCSSCSSEEEEEEEEEECSSSCHHHHHHHHHHHHHHHGGGG
T ss_pred ------ecCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 12335568999999999999999999999999999988654
No 5
>d1smya1 d.74.3.1 (A:1-49,A:173-229) RNA polymerase alpha {Thermus thermophilus [TaxId: 274]}
Probab=98.50 E-value=1.2e-07 Score=71.72 Aligned_cols=86 Identities=14% Similarity=0.227 Sum_probs=67.2
Q ss_pred CCeEEEEeCCCCEEEEEEEEEecccccc---------ceecccceeeeeecCCCCcccccCCCCCCCCCCccCccccccc
Q psy5332 102 DDILIVKLRKGQELRLRAYAKKGFGKEH---------AKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQH 172 (287)
Q Consensus 102 ~dI~I~kL~pGQ~I~le~~a~kGiGk~H---------AKwsPV~~~~y~~~P~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 172 (287)
|.+.++..+.|..--+..-..+|.|+.- +-++||..+.|+.++.
T Consensus 9 p~~~~~~~~~~y~~~v~~p~erG~g~~~gn~l~~il~ss~~PV~kV~y~Ve~~--------------------------- 61 (106)
T d1smya1 9 PVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPPVRRVAFQVEDT--------------------------- 61 (106)
T ss_dssp CCCEEEECSSSCEEEEEEEECTTHHHHHHHHHHHHHHHTCECEEEEEEEEEEC---------------------------
T ss_pred ceEEEeecCCceeEEEeeccCCCcccccccccceeehhcCChhhEEEEEeccc---------------------------
Confidence 4555567777775555555668888744 5599999999998753
Q ss_pred CCCCCcccCCCcEEEEeecCCccCHHHHHHHHHHHHHHHHHHHH
Q psy5332 173 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216 (287)
Q Consensus 173 ~~~~~~~~~~d~fif~VEs~G~l~p~~iv~~A~~iLk~Kl~~l~ 216 (287)
+++...+.++++++|+|+|+++|++++.+|+++|.+++..|.
T Consensus 62 --rvg~~~d~dkL~LeI~TnGsi~P~eAl~~Aa~il~~h~~~f~ 103 (106)
T d1smya1 62 --RLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFS 103 (106)
T ss_dssp --CCSSCSCCEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTSC
T ss_pred --ccCcccceeEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 234456789999999999999999999999999999886654
No 6
>d1bdfa2 d.181.1.1 (A:53-178) RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=98.17 E-value=2.9e-06 Score=65.87 Aligned_cols=59 Identities=24% Similarity=0.245 Sum_probs=48.3
Q ss_pred ceEEEEEEEEeeCCCCceeEeCCceeCCCeeeeccCCCcccCCCCCCCCCCeEEEEeC-CCCEEEEEEEEEeccccccc
Q psy5332 53 CSVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLR-KGQELRLRAYAKKGFGKEHA 130 (287)
Q Consensus 53 ctv~~~L~v~~~~~~~~~V~s~Dl~s~d~~v~P~~~~~~~~~~~~~~~~~dI~I~kL~-pGQ~I~le~~a~kGiGk~HA 130 (287)
....++|+++ ||+.||++||..... ++ .+|||..||.|. +|.+|+|++++.+|+||..|
T Consensus 44 ~~~~~~l~~~----gp~~VtA~di~~~~~-ve--------------IvNpd~~Iatlt~~~~~l~mel~v~~GrGYv~a 103 (126)
T d1bdfa2 44 DEVILTLNKS----GIGPVTAADITHDGD-VE--------------IVKPQHVICHLTDENASISMRIKVQRGRGYVPA 103 (126)
T ss_dssp SEEEEEEEEE----SSEEEEGGGBCCCSS-CE--------------ESCTTCEEEEECSTTCEEEEEEEEEECCSEECG
T ss_pred CceEEEEEec----CcccEEEecccCCCC-EE--------------EeCCceEEEEEecCCceEEEEEEEeCCCCeecc
Confidence 3567889987 999999999985321 22 578999999995 89999999999999999443
No 7
>d1smya2 d.181.1.1 (A:50-172) RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=98.10 E-value=9.3e-07 Score=68.52 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=48.6
Q ss_pred eEEEEEEEEeeCCCCceeEeCCceeCCCeeeeccCCCcccCCCCCCCCCCeEEEEeCCCCEEEEEEEEEeccccccc
Q psy5332 54 SVEFTLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAYAKKGFGKEHA 130 (287)
Q Consensus 54 tv~~~L~v~~~~~~~~~V~s~Dl~s~d~~v~P~~~~~~~~~~~~~~~~~dI~I~kL~pGQ~I~le~~a~kGiGk~HA 130 (287)
++.++|+++ ||+.|||+|+..... ++ .+|||..||+|.++.+++|++++.+|+||..|
T Consensus 47 ~~~~~l~~~----Gp~~VtA~Di~~~~~-ve--------------IvNpd~~IaTl~~~~~l~mel~v~~GrGYv~a 104 (123)
T d1smya2 47 TVTLLLKAE----GPKEVKARDFLPVAD-VE--------------IMNPDLHIATLEEGGRLNMEVRVDRGVGYVPA 104 (123)
T ss_dssp EEEEEEEEC----SSBCCBGGGSCCCTT-EE--------------ESCTTCBCCCBCTTCCEEEEEEEEEEESEECH
T ss_pred cEEEEEEec----CCCeEEeeeecCCCc-EE--------------EECCcEEEEEEcCCcEEEEEEEEcccccceEc
Confidence 577888885 999999999985432 32 67899999999999999999999999999443
No 8
>d1bdfa1 d.74.3.1 (A:2-52,A:179-232) RNA polymerase alpha {Escherichia coli [TaxId: 562]}
Probab=91.47 E-value=0.068 Score=39.06 Aligned_cols=34 Identities=24% Similarity=0.497 Sum_probs=30.6
Q ss_pred cCCCeEEEEEeecCCCChhhHHHHHHHHHHHHHH
Q psy5332 237 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 270 (287)
Q Consensus 237 ~~~d~f~f~veS~g~l~~~~i~~~a~~~l~~k~~ 270 (287)
.+-|+++|.|++.|++.|++.+..|.++|.+-+.
T Consensus 69 td~d~L~lei~TnGsi~p~eA~~~Aa~il~~~~~ 102 (105)
T d1bdfa1 69 TDLDKLVIEMETNGTIDPEEAIRRAATILAEQLE 102 (105)
T ss_dssp SSEEEEEEEEEECSSSCHHHHHHHHHHHHHHHGG
T ss_pred CcceEEEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999988764
No 9
>d1smya1 d.74.3.1 (A:1-49,A:173-229) RNA polymerase alpha {Thermus thermophilus [TaxId: 274]}
Probab=89.59 E-value=0.22 Score=36.31 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=31.1
Q ss_pred cCCCeEEEEEeecCCCChhhHHHHHHHHHHHHHHH
Q psy5332 237 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSN 271 (287)
Q Consensus 237 ~~~d~f~f~veS~g~l~~~~i~~~a~~~l~~k~~~ 271 (287)
.+-|+++|.|++.|++.|++-+..|.++|.+-+..
T Consensus 67 ~d~dkL~LeI~TnGsi~P~eAl~~Aa~il~~h~~~ 101 (106)
T d1smya1 67 TDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTY 101 (106)
T ss_dssp SCCEEEEEEEEECSSSCHHHHHHHHHHHHHHHHHT
T ss_pred cceeEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999999999887653
No 10
>d1twfk_ d.74.3.2 (K:) RPB11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=85.10 E-value=1.1 Score=32.64 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=40.8
Q ss_pred cCCCeEEEEEeecCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy5332 237 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELS 281 (287)
Q Consensus 237 ~~~d~f~f~veS~g~l~~~~i~~~a~~~l~~k~~~l~~~l~~~~~ 281 (287)
.-.++.+|.|...+.-+|.+++..|++-|++.++.+++.++++.+
T Consensus 66 Pl~~~i~irI~t~~~~~p~~~l~~a~~~l~~~~~~l~~~f~~e~~ 110 (114)
T d1twfk_ 66 PFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETEWN 110 (114)
T ss_dssp TTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCeeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 447899999999999999999999999999999999999988643
No 11
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL {Thermoplasma acidophilum [TaxId: 2303]}
Probab=84.61 E-value=0.88 Score=32.27 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=38.1
Q ss_pred cCCCeEEEEEeecCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy5332 237 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELS 281 (287)
Q Consensus 237 ~~~d~f~f~veS~g~l~~~~i~~~a~~~l~~k~~~l~~~l~~~~~ 281 (287)
.-.+..+|.|.+.|. +|.+++..|++-|.+.++.|.+.+++..+
T Consensus 50 Pl~~~~~l~I~t~~~-~p~~~l~~a~~~li~~~~~l~~~~~~~~~ 93 (99)
T d1xppa_ 50 PVIDNPQIYVRVKSG-KPQSAIKRAVRKLSKLYEDLGTQFQKEFQ 93 (99)
T ss_dssp TTTSCCEEEEEESSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEEEeCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999887 89999999999999999999999987654
No 12
>d1twfk_ d.74.3.2 (K:) RPB11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=81.45 E-value=1.2 Score=32.35 Aligned_cols=41 Identities=12% Similarity=0.321 Sum_probs=36.7
Q ss_pred CCcEEEEeecCCccCHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy5332 182 PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222 (287)
Q Consensus 182 ~d~fif~VEs~G~l~p~~iv~~A~~iLk~Kl~~l~~~l~~e 222 (287)
.++.+|.|.+++..+|.+++..|++-|.+.++.+.+.+..+
T Consensus 68 ~~~i~irI~t~~~~~p~~~l~~a~~~l~~~~~~l~~~f~~e 108 (114)
T d1twfk_ 68 FARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFETE 108 (114)
T ss_dssp SCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999998877653
No 13
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL {Thermoplasma acidophilum [TaxId: 2303]}
Probab=80.18 E-value=1.1 Score=31.71 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=34.4
Q ss_pred CCcEEEEeecCCccCHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy5332 182 PNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222 (287)
Q Consensus 182 ~d~fif~VEs~G~l~p~~iv~~A~~iLk~Kl~~l~~~l~~e 222 (287)
.+...|.|.++|. +|.+++..|++-|.+.++.|.+.+..+
T Consensus 52 ~~~~~l~I~t~~~-~p~~~l~~a~~~li~~~~~l~~~~~~~ 91 (99)
T d1xppa_ 52 IDNPQIYVRVKSG-KPQSAIKRAVRKLSKLYEDLGTQFQKE 91 (99)
T ss_dssp TSCCEEEEEESSS-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999887 899999999999999999998877544
No 14
>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=32.54 E-value=16 Score=24.23 Aligned_cols=35 Identities=17% Similarity=0.405 Sum_probs=27.6
Q ss_pred CCeEEEEeCCCCEEEEEEEEEeccccccceecccce
Q psy5332 102 DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAG 137 (287)
Q Consensus 102 ~dI~I~kL~pGQ~I~le~~a~kGiGk~HAKwsPV~~ 137 (287)
....|..|.||.+-.+++.|+.+.|. =..||+...
T Consensus 65 ~~~~i~~L~p~t~Y~~rVra~~~~G~-wS~wS~~~~ 99 (103)
T d1f6fb2 65 TQFKVFDLYPGQKYLVQTRCKPDHGY-WSRWSQESS 99 (103)
T ss_dssp SEEEECCCCTTCEEEEEEEEEESSSC-CCCCCCCEE
T ss_pred eEEEeCCCCcceEEEEEEEEEeCCCC-CCCCcCcee
Confidence 35667789999999999999998883 267777654
No 15
>d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.90 E-value=34 Score=22.46 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=32.6
Q ss_pred EEEEEeecCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhccc
Q psy5332 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHD 283 (287)
Q Consensus 242 f~f~veS~g~l~~~~i~~~a~~~l~~k~~~l~~~l~~~~~~~ 283 (287)
=+..++..|.++++. +..+++.-++.++.+.+.+++..+++
T Consensus 44 ~I~~~~~~g~~~~~~-~~~~l~~a~~~~~~i~~~~~~~l~~~ 84 (90)
T d2nn6b2 44 QIALLEMDARLHEDH-LERVLEAAAQAARDVHTLLDRVVRQH 84 (90)
T ss_dssp EEEEEEECSCCBTTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEecccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477788999998866 88999999999988888777655444
No 16
>d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=30.55 E-value=48 Score=21.49 Aligned_cols=42 Identities=7% Similarity=0.090 Sum_probs=33.7
Q ss_pred EEEEEeecCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy5332 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDA 284 (287)
Q Consensus 242 f~f~veS~g~l~~~~i~~~a~~~l~~k~~~l~~~l~~~~~~~~ 284 (287)
=+..++..|.+++++ +.++++.-.+-+..+...+++-+++.|
T Consensus 44 ~i~~~~~~g~~~~~~-~~~~l~~a~~~~~~I~~~~~e~l~~ry 85 (86)
T d2je6b2 44 QVTLFQLNGSMTPDE-FRQAFDLAVKGINIIYNLEREALKSKY 85 (86)
T ss_dssp EEEEEEEEECBCHHH-HHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred eEEEEeecCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356678889998875 799999999999999887777666554
No 17
>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=29.50 E-value=0.69 Score=31.07 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=23.0
Q ss_pred cccCCCeEEEEEeecCCCChhhHHHHH
Q psy5332 235 WEAKPNKYFFNVESAGALKPENIVIMG 261 (287)
Q Consensus 235 ~~~~~d~f~f~veS~g~l~~~~i~~~a 261 (287)
+.+..+.+.|||||.+||+..+|...+
T Consensus 4 L~k~I~~L~lS~R~~N~L~~~gI~tvg 30 (72)
T d1lb2b_ 4 LLRPVDDLELTVRSANCLKAEAIHYIG 30 (72)
T ss_dssp TTSBGGGGCCCHHHHHHHHHTTCCBHH
T ss_pred hcCcHHHhCCCHHHHHHHhHcCCcCHH
Confidence 345678899999999999999998877
No 18
>d1pk6b_ b.22.1.1 (B:) Complement c1q globular head, B chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.22 E-value=53 Score=22.78 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=26.0
Q ss_pred CeEEEEeCCCCEEEEEEEEEeccccccceecccceeeeeecC
Q psy5332 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144 (287)
Q Consensus 103 dI~I~kL~pGQ~I~le~~a~kGiGk~HAKwsPV~~~~y~~~P 144 (287)
.-.|+.|..|+.+.+++..--|.+-.-..++ .-..|.+.|
T Consensus 92 ~s~i~~L~agD~V~v~~~~~~~~~~~~~~~s--~F~G~Li~p 131 (132)
T d1pk6b_ 92 GGMVLKLEQGENVFLQATDKNSLLGMEGANS--IFSGFLLFP 131 (132)
T ss_dssp EEEEEEECTTCEEEEEEEEEECCBCBTTBCE--EEEEEEEEE
T ss_pred EEEEEEecCCCEEEEEEeCCCcEecCCCCcE--EEEEEEEec
Confidence 3478899999999999887665543222222 234566665
No 19
>d2vmha1 b.18.1.33 (A:906-1050) Uncharacterized Protein CPF2129 {Clostridium perfringens [TaxId: 1502]}
Probab=24.68 E-value=54 Score=23.97 Aligned_cols=26 Identities=15% Similarity=0.360 Sum_probs=20.1
Q ss_pred EeCCCCEEEEEEE-EEeccccccceec
Q psy5332 108 KLRKGQELRLRAY-AKKGFGKEHAKWN 133 (287)
Q Consensus 108 kL~pGQ~I~le~~-a~kGiGk~HAKws 133 (287)
-|.--++|+|.+. +--|.+.+||-|-
T Consensus 114 dv~G~~~L~L~v~~~gdg~~~Dha~W~ 140 (145)
T d2vmha1 114 PIAGKNTLKLVVKDGGDSIGSDHGSFG 140 (145)
T ss_dssp ECTTCCEEEEEEECTTSCCTTCEEEEE
T ss_pred ecCCCeEEEEEEEeCCCCCCCceEEEE
Confidence 5566689988876 4458899999994
No 20
>d1pk6c_ b.22.1.1 (C:) Complement c1q globular head, C chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.31 E-value=62 Score=22.43 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=19.9
Q ss_pred CeEEEEeCCCCEEEEEEEEEecccc
Q psy5332 103 DILIVKLRKGQELRLRAYAKKGFGK 127 (287)
Q Consensus 103 dI~I~kL~pGQ~I~le~~a~kGiGk 127 (287)
.-.|+.|..|+.+.+++..-.+.+.
T Consensus 89 ~s~i~~L~agD~V~v~~~~~~~~~~ 113 (129)
T d1pk6c_ 89 GGVLLRLQVGEEVWLAVNDYYDMVG 113 (129)
T ss_dssp EEEEEEECTTCEEEEEEEEEECCCC
T ss_pred eEEEEECCCCCEEEEEEECCcceec
Confidence 3467899999999999988766554
No 21
>d1qcsa1 b.52.2.3 (A:0-85) N-terminal domain of NSF-N, NSF-Nn {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=20.69 E-value=21 Score=24.03 Aligned_cols=29 Identities=17% Similarity=0.481 Sum_probs=22.1
Q ss_pred CCeEEEEEeecCCCChhhHHHHHHHHHHHHHH
Q psy5332 239 PNKYFFNVESAGALKPENIVIMGVTVLKQKLS 270 (287)
Q Consensus 239 ~d~f~f~veS~g~l~~~~i~~~a~~~l~~k~~ 270 (287)
.++|+|++++.+.++|-.|-. ..+++|+.
T Consensus 43 ~~~fVft~~~~~~i~~G~Igl---n~~QR~wa 71 (86)
T d1qcsa1 43 NHKYIFTLRTHPSVVPGSVAF---SLPQRKWA 71 (86)
T ss_dssp TEEEEEEEEECTTSCTTEEEE---CHHHHHHH
T ss_pred CCeEEEEEeeCCCcCCCEEEc---cHhhHhhh
Confidence 568999999999999998744 33455554
No 22
>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.32 E-value=42 Score=21.24 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=23.9
Q ss_pred CCeEEEEeCCCCEEEEEEEEEecccc
Q psy5332 102 DDILIVKLRKGQELRLRAYAKKGFGK 127 (287)
Q Consensus 102 ~dI~I~kL~pGQ~I~le~~a~kGiGk 127 (287)
....|..|.||++=.+.+.|..|.|.
T Consensus 55 ~~~~i~~L~p~t~Y~~~V~a~~~~g~ 80 (90)
T d1tena_ 55 NQYSIGNLKPDTEYEVSLISRRGDMS 80 (90)
T ss_dssp CEEEECSCCTTCEEEEEEEEEETTEE
T ss_pred ceeeEeeecCCCEEEEEEEEEeCCCE
Confidence 56788899999999999999999997
No 23
>d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase alpha subunit {Bacillus subtilis [TaxId: 1423]}
Probab=20.07 E-value=1.2 Score=29.37 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=21.3
Q ss_pred cCCCeEEEEEeecCCCChhhHHHHH
Q psy5332 237 AKPNKYFFNVESAGALKPENIVIMG 261 (287)
Q Consensus 237 ~~~d~f~f~veS~g~l~~~~i~~~a 261 (287)
...+.+.|||++.+||+..+|...+
T Consensus 7 ~~I~~L~LS~R~~N~Lk~~~I~tv~ 31 (67)
T d1z3eb1 7 MTIEELDLSVRSYNCLKRAGINTVQ 31 (67)
T ss_dssp CBGGGSCCBHHHHHHHHHTTCCBHH
T ss_pred CCHHHhcCCHHHHHHHHHcCCcCHH
Confidence 3567889999999999999988777
Done!