Your job contains 1 sequence.
>psy5332
MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD
VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY
AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA
KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEAPYNWEAKPN
KYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALAC
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5332
(287 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0026373 - symbol:RpII33 "RNA polymerase II 33kD su... 1000 7.9e-101 1
UNIPROTKB|Q3T0Q3 - symbol:POLR2C "DNA-directed RNA polyme... 891 2.8e-89 1
UNIPROTKB|E2RQ42 - symbol:POLR2C "Uncharacterized protein... 891 2.8e-89 1
RGD|1306935 - symbol:Polr2c "polymerase (RNA) II (DNA dir... 891 2.8e-89 1
UNIPROTKB|I3LCH3 - symbol:POLR2C "Uncharacterized protein... 886 9.6e-89 1
UNIPROTKB|P19387 - symbol:POLR2C "DNA-directed RNA polyme... 885 1.2e-88 1
UNIPROTKB|E1BV97 - symbol:POLR2C "Uncharacterized protein... 877 8.6e-88 1
ZFIN|ZDB-GENE-030131-6609 - symbol:polr2c "polymerase (RN... 857 1.1e-85 1
MGI|MGI:109299 - symbol:Polr2c "polymerase (RNA) II (DNA ... 846 1.7e-84 1
UNIPROTKB|D4A8A8 - symbol:Polr2c "Protein Polr2c" species... 772 1.1e-76 1
WB|WBGene00007971 - symbol:rpb-3 species:6239 "Caenorhabd... 647 2.0e-63 1
DICTYBASE|DDB_G0292244 - symbol:rpb3 "RNA polymerase II c... 379 9.7e-46 2
CGD|CAL0002919 - symbol:orf19.1248 species:5476 "Candida ... 461 1.0e-43 1
UNIPROTKB|Q5A462 - symbol:RPB3 "Putative uncharacterized ... 461 1.0e-43 1
SGD|S000001283 - symbol:RPB3 "RNA polymerase II third lar... 442 1.1e-41 1
TAIR|locus:2047168 - symbol:NRPB3 species:3702 "Arabidops... 380 2.0e-41 2
ASPGD|ASPL0000005413 - symbol:AN6252 species:162425 "Emer... 430 2.0e-40 1
POMBASE|SPCC1442.10c - symbol:rpb3 "RNA polymerase II sub... 419 2.9e-39 1
TAIR|locus:2047198 - symbol:NRPE3B species:3702 "Arabidop... 354 6.5e-39 2
TAIR|locus:2025855 - symbol:ATRPAC42 species:3702 "Arabid... 120 4.2e-14 3
FB|FBgn0031657 - symbol:CG3756 species:7227 "Drosophila m... 155 2.1e-13 2
TAIR|locus:2036494 - symbol:RPAC43 "RNA polymerase I subu... 118 2.8e-13 3
SGD|S000006314 - symbol:RPC40 "RNA polymerase subunit AC4... 150 2.9e-13 2
POMBASE|SPBC1289.07c - symbol:rpc40 "DNA-directed RNA pol... 149 5.2e-12 2
ZFIN|ZDB-GENE-040426-1495 - symbol:polr1c "polymerase (RN... 157 5.2e-12 2
DICTYBASE|DDB_G0282339 - symbol:rpa5 "RNA polymerase III ... 169 6.2e-12 2
UNIPROTKB|F1LXY3 - symbol:Polr1c "Protein Polr1c" species... 154 1.2e-11 2
CGD|CAL0005950 - symbol:RPC40 species:5476 "Candida albic... 152 1.5e-11 2
UNIPROTKB|E1C548 - symbol:POLR1C "Uncharacterized protein... 154 1.6e-11 2
UNIPROTKB|Q5RJK9 - symbol:Polr1c "Protein Polr1c" species... 158 2.6e-11 2
WB|WBGene00019275 - symbol:rpac-40 species:6239 "Caenorha... 119 3.4e-11 3
UNIPROTKB|F1RRJ4 - symbol:POLR1C "Uncharacterized protein... 156 4.0e-11 2
UNIPROTKB|E2RH57 - symbol:POLR1C "Uncharacterized protein... 154 6.7e-11 2
UNIPROTKB|O15160 - symbol:POLR1C "DNA-directed RNA polyme... 153 8.9e-11 2
UNIPROTKB|Q32L22 - symbol:POLR1C "DNA-directed RNA polyme... 153 1.8e-10 2
MGI|MGI:103288 - symbol:Polr1c "polymerase (RNA) I polype... 150 2.7e-10 2
ASPGD|ASPL0000043748 - symbol:AN2415 species:162425 "Emer... 97 1.3e-08 3
UNIPROTKB|G4MQN0 - symbol:MGG_09284 "DNA-directed RNA pol... 130 7.9e-08 2
UNIPROTKB|E7EQB9 - symbol:POLR1C "DNA-directed RNA polyme... 118 8.7e-07 2
UNIPROTKB|Q57648 - symbol:rpoD "DNA-directed RNA polymera... 92 0.00064 2
>FB|FBgn0026373 [details] [associations]
symbol:RpII33 "RNA polymerase II 33kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS;NAS] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0034605 "cellular response to heat" evidence=IEP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005703 "polytene chromosome puff"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IDA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
GO:GO:0005737 GO:GO:0005875 GO:GO:0034605 EMBL:AE014134
GO:GO:0003677 GO:GO:0006366 GO:GO:0005703 GO:GO:0003899 KO:K03011
GO:GO:0005665 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 GeneTree:ENSGT00640000091532 OMA:NQPTVKI
EMBL:AY060644 EMBL:AJ133650 RefSeq:NP_477419.1 UniGene:Dm.3412
HSSP:P16370 SMR:O97183 IntAct:O97183 MINT:MINT-801436 STRING:O97183
EnsemblMetazoa:FBtr0080544 GeneID:34796 KEGG:dme:Dmel_CG7885
UCSC:CG7885-RA CTD:34796 FlyBase:FBgn0026373 InParanoid:O97183
OrthoDB:EOG441NT4 GenomeRNAi:34796 NextBio:790263 Uniprot:O97183
Length = 275
Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
Identities = 181/223 (81%), Positives = 210/223 (94%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQLEANSTVLSDEF+A RIGLIPL SD+VV+R+ Y+RDC C+DFC ECSVEFTLD
Sbjct: 45 LAIDWVQLEANSTVLSDEFLAHRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGET-DDILIVKLRKGQELRLRA 119
VKC ++QTRHVTTADLKS++A+V+PVTSRN+ + NEYGE+ D+ILI+KLRKGQEL+LRA
Sbjct: 105 VKCSEEQTRHVTTADLKSSNAKVLPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRA 164
Query: 120 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWE 179
YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL+PKPDEWPKSE++EL++ Q+EAPYNWE
Sbjct: 165 YAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLYPKPDEWPKSEHTELEDDQYEAPYNWE 224
Query: 180 AKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
AKPNK+FFNVESAGALKPENIV+MGV VLK KLSNLQTQL+H+
Sbjct: 225 AKPNKFFFNVESAGALKPENIVVMGVQVLKNKLSNLQTQLSHE 267
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 49/57 (85%), Positives = 53/57 (92%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDALA 286
EAPYNWEAKPNK+FFNVESAGALKPENIV+MGV VLK KLSNLQTQL+HE +DALA
Sbjct: 218 EAPYNWEAKPNKFFFNVESAGALKPENIVVMGVQVLKNKLSNLQTQLSHESQNDALA 274
>UNIPROTKB|Q3T0Q3 [details] [associations]
symbol:POLR2C "DNA-directed RNA polymerase II subunit RPB3"
species:9913 "Bos taurus" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0015630 "microtubule
cytoskeleton" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 EMBL:BT030680 EMBL:BC102301 IPI:IPI00690694
RefSeq:NP_001029384.1 UniGene:Bt.49139 ProteinModelPortal:Q3T0Q3
STRING:Q3T0Q3 PRIDE:Q3T0Q3 Ensembl:ENSBTAT00000002420 GeneID:504452
KEGG:bta:504452 CTD:5432 GeneTree:ENSGT00640000091532
HOVERGEN:HBG000897 InParanoid:Q3T0Q3 OMA:NQPTVKI OrthoDB:EOG437RFC
NextBio:20866665 Uniprot:Q3T0Q3
Length = 275
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 159/222 (71%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
Score = 165 (63.1 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 29/57 (50%), Positives = 45/57 (78%)
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDAL 285
++APY+ KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+HE+ D L
Sbjct: 216 SQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVL 272
>UNIPROTKB|E2RQ42 [details] [associations]
symbol:POLR2C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015630 "microtubule cytoskeleton"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0005737 GO:GO:0015630
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 CTD:5432
GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:AAEX03001573
EMBL:AAEX03001572 RefSeq:XP_535283.2 ProteinModelPortal:E2RQ42
PRIDE:E2RQ42 Ensembl:ENSCAFT00000013863 GeneID:478109
KEGG:cfa:478109 NextBio:20853480 Uniprot:E2RQ42
Length = 275
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 159/222 (71%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
Score = 165 (63.1 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 29/57 (50%), Positives = 45/57 (78%)
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDAL 285
++APY+ KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+HE+ D L
Sbjct: 216 SQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVL 272
>RGD|1306935 [details] [associations]
symbol:Polr2c "polymerase (RNA) II (DNA directed) polypeptide C"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0015630 "microtubule cytoskeleton" evidence=IEA;ISO]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 RGD:1306935 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
KO:K03011 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 HOGENOM:HOG000230844 CTD:5432
GeneTree:ENSGT00640000091532 HOVERGEN:HBG000897 OMA:NQPTVKI
EMBL:CH474006 EMBL:BC089905 IPI:IPI00476352 RefSeq:NP_001012491.1
UniGene:Rn.139399 SMR:Q5EB90 STRING:Q5EB90
Ensembl:ENSRNOT00000021639 GeneID:361365 KEGG:rno:361365
UCSC:RGD:1306935 NextBio:676047 Genevestigator:Q5EB90
Uniprot:Q5EB90
Length = 275
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 159/222 (71%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
Score = 165 (63.1 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 29/57 (50%), Positives = 45/57 (78%)
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDAL 285
++APY+ KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+HE+ D L
Sbjct: 216 SQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVL 272
>UNIPROTKB|I3LCH3 [details] [associations]
symbol:POLR2C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:FP326735
RefSeq:XP_003355849.1 Ensembl:ENSSSCT00000024584 GeneID:100620737
KEGG:ssc:100620737 Uniprot:I3LCH3
Length = 275
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 158/222 (71%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D ++Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPSDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
Score = 165 (63.1 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 29/57 (50%), Positives = 45/57 (78%)
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDAL 285
++APY+ KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+HE+ D L
Sbjct: 216 SQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVL 272
>UNIPROTKB|P19387 [details] [associations]
symbol:POLR2C "DNA-directed RNA polymerase II subunit RPB3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IDA;TAS] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0015630 "microtubule
cytoskeleton" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0005737 Reactome:REACT_116125
GO:GO:0016032 GO:GO:0015630 GO:GO:0003677 Reactome:REACT_1675
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
EMBL:AC004382 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 GO:GO:0003899 KO:K03011 GO:GO:0005665
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
CTD:5432 HOVERGEN:HBG000897 OMA:NQPTVKI OrthoDB:EOG437RFC
EMBL:J05448 EMBL:AF008443 EMBL:AJ224143 EMBL:AJ224144 EMBL:BC000409
EMBL:BC003159 EMBL:BC028157 IPI:IPI00018288 PIR:A36264
RefSeq:NP_116558.1 UniGene:Hs.79402 ProteinModelPortal:P19387
SMR:P19387 DIP:DIP-32911N IntAct:P19387 MINT:MINT-270053
STRING:P19387 PhosphoSite:P19387 DMDM:3915850 PaxDb:P19387
PeptideAtlas:P19387 PRIDE:P19387 DNASU:5432 Ensembl:ENST00000219252
GeneID:5432 KEGG:hsa:5432 UCSC:uc002elt.1 GeneCards:GC16P057496
HGNC:HGNC:9189 HPA:HPA040919 HPA:HPA041826 MIM:180663
neXtProt:NX_P19387 PharmGKB:PA33509 InParanoid:P19387
PhylomeDB:P19387 GenomeRNAi:5432 NextBio:21017 ArrayExpress:P19387
Bgee:P19387 CleanEx:HS_POLR2C Genevestigator:P19387
GermOnline:ENSG00000102978 Uniprot:P19387
Length = 275
Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
Identities = 158/222 (71%), Positives = 194/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPL SD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
Score = 165 (63.1 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 29/57 (50%), Positives = 45/57 (78%)
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDAL 285
++APY+ KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+HE+ D L
Sbjct: 216 SQAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVL 272
>UNIPROTKB|E1BV97 [details] [associations]
symbol:POLR2C "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0046983
"protein dimerization activity" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0015630
"microtubule cytoskeleton" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 GO:GO:0005665
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 CTD:5432
GeneTree:ENSGT00640000091532 OMA:NQPTVKI EMBL:AADN02065759
IPI:IPI00579063 RefSeq:XP_414001.1 UniGene:Gga.11991 PRIDE:E1BV97
Ensembl:ENSGALT00000001768 GeneID:415635 KEGG:gga:415635
NextBio:20819207 Uniprot:E1BV97
Length = 275
Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
Identities = 156/222 (70%), Positives = 195/222 (87%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKMQYSRDCTCDEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DDILIVKLRKGQEL+LRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNNPRVIPVTSRSRDNDPNDYVEQDDILIVKLRKGQELKLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSE+DE +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSEIDEEDAQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHE 266
Score = 164 (62.8 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 29/56 (51%), Positives = 44/56 (78%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDAL 285
+APY+ KP ++++NVES G+L+PE IV+ ++ LK+KLS+LQTQL+HE+ D L
Sbjct: 217 QAPYDPNGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDLQTQLSHEIQSDVL 272
>ZFIN|ZDB-GENE-030131-6609 [details] [associations]
symbol:polr2c "polymerase (RNA) II (DNA directed)
polypeptide C" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
SMART:SM00662 ZFIN:ZDB-GENE-030131-6609 GO:GO:0003677 GO:GO:0006351
EMBL:AL929309 GO:GO:0003899 KO:K03011 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 CTD:5432 GeneTree:ENSGT00640000091532
HOVERGEN:HBG000897 OMA:NQPTVKI OrthoDB:EOG437RFC EMBL:BC046047
IPI:IPI00484221 RefSeq:NP_001161428.1 UniGene:Dr.81878
STRING:Q7ZV11 Ensembl:ENSDART00000043812 GeneID:334669
KEGG:dre:334669 InParanoid:Q7ZV11 NextBio:20810502 Uniprot:Q7ZV11
Length = 275
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 152/222 (68%), Positives = 191/222 (86%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEF+A R+GLIPLTSD++VD++ YSRDCTC DFC ECSVE TLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFVAHRVGLIPLTSDDIVDKMQYSRDCTCDDFCPECSVELTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S + RV+PVTSR+RD D N+Y E DDIL+VKLRKGQELRLRAY
Sbjct: 105 VRCTEDQTRHVTSRDLLSNNPRVIPVTSRSRDNDPNDYVEQDDILLVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++P P EWPKSEYSE++E +A Y+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPIPQEWPKSEYSEIEEDGVQAQYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE IV+ + +LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIVMSALAMLKKKLSDLQTQLSHE 266
Score = 158 (60.7 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 28/56 (50%), Positives = 43/56 (76%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDAL 285
+A Y+ KP ++++NVES G+L+PE IV+ + +LK+KLS+LQTQL+HE+ D L
Sbjct: 217 QAQYDPNGKPERFYYNVESCGSLRPETIVMSALAMLKKKLSDLQTQLSHEIQSDVL 272
>MGI|MGI:109299 [details] [associations]
symbol:Polr2c "polymerase (RNA) II (DNA directed) polypeptide
C" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 MGI:MGI:109299 GO:GO:0005737 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 HOVERGEN:HBG000897 EMBL:D83999 IPI:IPI00129026
PIR:JC6181 UniGene:Mm.292492 ProteinModelPortal:P97760 SMR:P97760
IntAct:P97760 STRING:P97760 PhosphoSite:P97760 PaxDb:P97760
PRIDE:P97760 CleanEx:MM_POLR2C Genevestigator:P97760 Uniprot:P97760
Length = 275
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 153/222 (68%), Positives = 188/222 (84%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ NS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDGNSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
KK GKEHAKWNPTAGV FEYDPDN +RHT++PKP+E PKSEYSELDE + +APY+
Sbjct: 165 VKKRSGKEHAKWNPTAGVAFEYDPDNGLRHTVYPKPEEGPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
KP ++++NVES G+L+PE I + ++ LK+KLS+LQTQL+H+
Sbjct: 225 KPERFYYNVESCGSLRPETIGLSALSGLKKKLSDLQTQLSHE 266
Score = 158 (60.7 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 28/57 (49%), Positives = 44/57 (77%)
Query: 229 NEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDAL 285
++APY+ KP ++++NVES G+L+PE I + ++ LK+KLS+LQTQL+HE+ D L
Sbjct: 216 SQAPYDPNGKPERFYYNVESCGSLRPETIGLSALSGLKKKLSDLQTQLSHEIQSDVL 272
>UNIPROTKB|D4A8A8 [details] [associations]
symbol:Polr2c "Protein Polr2c" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 RGD:1306935 GO:GO:0005737 GO:GO:0015630 GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 OrthoDB:EOG437RFC IPI:IPI00779676
Ensembl:ENSRNOT00000061255 ArrayExpress:D4A8A8 Uniprot:D4A8A8
Length = 330
Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
Identities = 138/184 (75%), Positives = 162/184 (88%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ++ANS+VL DEFIA R+GLIPLTSD++VD++ YSRDCTC +FC ECSVEFTLD
Sbjct: 45 IAIDWVQIDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLD 104
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
V+C +DQTRHVT+ DL S RV+PVTSRNRD D N+Y E DDILIVKLRKGQELRLRAY
Sbjct: 105 VRCNEDQTRHVTSRDLISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAY 164
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSELDETQHEAPYNWEA 180
AKKGFGKEHAKWNPTAGV FEYDPDN++RHT++PKP+EWPKSEYSELDE + +APY+
Sbjct: 165 AKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKPEEWPKSEYSELDEDESQAPYDPNG 224
Query: 181 KPNK 184
KP +
Sbjct: 225 KPER 228
>WB|WBGene00007971 [details] [associations]
symbol:rpb-3 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
SMART:SM00662 EMBL:Z80215 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0003677 GO:GO:0040011 GO:GO:0000003
GO:GO:0006351 GO:GO:0003899 KO:K03011 GO:GO:0001703 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 GeneTree:ENSGT00640000091532 OMA:NQPTVKI
PIR:T19774 RefSeq:NP_492361.2 UniGene:Cel.32712
ProteinModelPortal:Q93338 SMR:Q93338 STRING:Q93338 PaxDb:Q93338
EnsemblMetazoa:C36B1.3 GeneID:172680 KEGG:cel:CELE_C36B1.3
UCSC:C36B1.3 CTD:172680 WormBase:C36B1.3 InParanoid:Q93338
NextBio:876551 Uniprot:Q93338
Length = 282
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 121/230 (52%), Positives = 163/230 (70%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AIDWVQ+E N++VL DEFIA R+GLIP SD V+++ Y+RDC C +FC ECS+ F L
Sbjct: 45 IAIDWVQIETNTSVLHDEFIAHRMGLIPFISDYHVEKMQYTRDCECAEFCDECSIPFILQ 104
Query: 61 VKCVDDQTRHVTTADLK---STDARVVPVTS---RNRDADMNEYGETDDILIVKLRKGQE 114
+KC D+ T VTT L + D V P R R + +E+ ++ILIVKLRKGQE
Sbjct: 105 MKCKDEATLAVTTEHLMPMHNLDTTVRPACGKALRERGSTRDEFHNREEILIVKLRKGQE 164
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYSEL--DETQH 172
L L+AY KKGFGKEHAKWNPT GV FEYDPDN++RHT++P +EWP+S++S L D T+
Sbjct: 165 LNLKAYVKKGFGKEHAKWNPTCGVAFEYDPDNALRHTIYPNVEEWPRSDHSSLPEDSTEK 224
Query: 173 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHD 222
EAP+ + KPNK++F++E GAL + IV MG+ +LK+KL L L+++
Sbjct: 225 EAPFEPDNKPNKFWFSIEGTGALPAQRIVTMGIGILKRKLEELNMALSNE 274
Score = 130 (50.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHDA 284
EAP+ + KPNK++F++E GAL + IV MG+ +LK+KL L L++EL A
Sbjct: 225 EAPFEPDNKPNKFWFSIEGTGALPAQRIVTMGIGILKRKLEELNMALSNELQAHA 279
>DICTYBASE|DDB_G0292244 [details] [associations]
symbol:rpb3 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
dictyBase:DDB_G0292244 GenomeReviews:CM000155_GR GO:GO:0003677
GO:GO:0006366 GO:GO:0003899 KO:K03011 EMBL:AAFI02000188
GO:GO:0005665 eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 OMA:KWQAGVA RefSeq:XP_629750.1
ProteinModelPortal:Q54DH7 STRING:Q54DH7 PRIDE:Q54DH7
EnsemblProtists:DDB0216289 GeneID:8628579 KEGG:ddi:DDB_G0292244
ProtClustDB:CLSZ2728736 Uniprot:Q54DH7
Length = 302
Score = 379 (138.5 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 72/144 (50%), Positives = 105/144 (72%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
M ID V+ E+N++VL DEFIA R+GLIPL SD + D+ Y+RDC+C D C +CSVE L+
Sbjct: 50 MCIDLVEFESNNSVLCDEFIAHRLGLIPLVSDNI-DKFCYTRDCSCSDRCDQCSVELRLN 108
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
VKC +++ R VT++DL S ++ V+PV+S+ ++ + +I IVKLR+GQE++LRA
Sbjct: 109 VKCTENRPRDVTSSDLLSQNSAVIPVSSQVTSSNSEQ-----EIPIVKLRRGQEIKLRAI 163
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDP 144
AKKG GKEHAKW+P+ +++ P
Sbjct: 164 AKKGVGKEHAKWSPSCVATYQFQP 187
Score = 118 (46.6 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 21/42 (50%), Positives = 34/42 (80%)
Query: 179 EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
E K +K+ F VES+GALKPE+IV+ + ++K+KL+++Q Q+A
Sbjct: 257 EQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQGQMA 298
Score = 118 (46.6 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 21/42 (50%), Positives = 34/42 (80%)
Query: 236 EAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 277
E K +K+ F VES+GALKPE+IV+ + ++K+KL+++Q Q+A
Sbjct: 257 EQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQGQMA 298
>CGD|CAL0002919 [details] [associations]
symbol:orf19.1248 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
CGD:CAL0002919 GO:GO:0042493 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 KO:K03011 EMBL:AACQ01000068 EMBL:AACQ01000067
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 RefSeq:XP_716500.1 RefSeq:XP_716556.1
ProteinModelPortal:Q5A462 SMR:Q5A462 STRING:Q5A462 GeneID:3641812
GeneID:3641858 KEGG:cal:CaO19.1248 KEGG:cal:CaO19.8832
Uniprot:Q5A462
Length = 318
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 99/236 (41%), Positives = 148/236 (62%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ N++VL+DEF++ R+GLIPL S E +D + YSRDCTC ++CS+CSV L
Sbjct: 47 LAIDLVEIDVNTSVLADEFLSHRLGLIPLVS-EGIDNLTYSRDCTCDNYCSKCSVTLQLI 105
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
C + T +V +DL+ S+ D + + + LI KLRK QEL L
Sbjct: 106 ANCATESTMNVYASDLQKMSHN----GSKLGDPVIRD-PQARGPLICKLRKHQELSLTCI 160
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT-LFPKPD---EWPKSEYSELDETQH-EAP 175
AKKG KEHAKW+PTA + FEYDP N ++HT + + D EWPKS+ + +E EAP
Sbjct: 161 AKKGIAKEHAKWSPTAAIGFEYDPWNKLKHTDYWYEVDAEAEWPKSKNCDWEEAPDPEAP 220
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEA 231
++++AKP+ Y+F+VE+ G L P ++I + L+ KL+ + +L + V +NEA
Sbjct: 221 FDYKAKPSTYYFDVETVGNLPPNEVIIKSIETLQTKLAAISIELNKEDV--EVNEA 274
Score = 112 (44.5 bits), Expect = 0.00067, P = 0.00067
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHE 279
EAP++++AKP+ Y+F+VE+ G L P ++I + L+ KL+ + +L E
Sbjct: 218 EAPFDYKAKPSTYYFDVETVGNLPPNEVIIKSIETLQTKLAAISIELNKE 267
>UNIPROTKB|Q5A462 [details] [associations]
symbol:RPB3 "Putative uncharacterized protein RPB3"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
CGD:CAL0002919 GO:GO:0042493 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 KO:K03011 EMBL:AACQ01000068 EMBL:AACQ01000067
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 RefSeq:XP_716500.1 RefSeq:XP_716556.1
ProteinModelPortal:Q5A462 SMR:Q5A462 STRING:Q5A462 GeneID:3641812
GeneID:3641858 KEGG:cal:CaO19.1248 KEGG:cal:CaO19.8832
Uniprot:Q5A462
Length = 318
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 99/236 (41%), Positives = 148/236 (62%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V+++ N++VL+DEF++ R+GLIPL S E +D + YSRDCTC ++CS+CSV L
Sbjct: 47 LAIDLVEIDVNTSVLADEFLSHRLGLIPLVS-EGIDNLTYSRDCTCDNYCSKCSVTLQLI 105
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
C + T +V +DL+ S+ D + + + LI KLRK QEL L
Sbjct: 106 ANCATESTMNVYASDLQKMSHN----GSKLGDPVIRD-PQARGPLICKLRKHQELSLTCI 160
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHT-LFPKPD---EWPKSEYSELDETQH-EAP 175
AKKG KEHAKW+PTA + FEYDP N ++HT + + D EWPKS+ + +E EAP
Sbjct: 161 AKKGIAKEHAKWSPTAAIGFEYDPWNKLKHTDYWYEVDAEAEWPKSKNCDWEEAPDPEAP 220
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRVFYVINEA 231
++++AKP+ Y+F+VE+ G L P ++I + L+ KL+ + +L + V +NEA
Sbjct: 221 FDYKAKPSTYYFDVETVGNLPPNEVIIKSIETLQTKLAAISIELNKEDV--EVNEA 274
Score = 112 (44.5 bits), Expect = 0.00067, P = 0.00067
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 230 EAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHE 279
EAP++++AKP+ Y+F+VE+ G L P ++I + L+ KL+ + +L E
Sbjct: 218 EAPFDYKAKPSTYYFDVETVGNLPPNEVIIKSIETLQTKLAAISIELNKE 267
>SGD|S000001283 [details] [associations]
symbol:RPB3 "RNA polymerase II third largest subunit B44"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003968
"RNA-directed RNA polymerase activity" evidence=IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 SGD:S000001283 GO:GO:0046872 GO:GO:0003677
EMBL:BK006942 EMBL:Z46881 GO:GO:0006369 GO:GO:0003899
RefSeq:NP_012243.3 GeneID:854791 KEGG:sce:YIL021W KO:K03011
GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9
PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC
PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y
PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5
PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY
PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ
PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO
PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX
PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y
PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14
PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R
PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F
PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93
PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83
PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S
PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF
PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W
PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H
PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7
PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY
PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM
PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ
PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP
PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW
PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N
PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2
PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14
PDBsum:3S15 PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N
PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B
PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G
PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M
PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 GeneTree:ENSGT00640000091532 OMA:NQPTVKI
OrthoDB:EOG4DV8VZ EMBL:M27496 PIR:S49961 RefSeq:NP_012250.3
ProteinModelPortal:P16370 SMR:P16370 DIP:DIP-837N IntAct:P16370
MINT:MINT-613688 STRING:P16370 PaxDb:P16370 PeptideAtlas:P16370
EnsemblFungi:YIL021W GeneID:854799 KEGG:sce:YIL014C-A CYGD:YIL021w
EvolutionaryTrace:P16370 NextBio:977585 Genevestigator:P16370
GermOnline:YIL021W Uniprot:P16370
Length = 318
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 94/232 (40%), Positives = 146/232 (62%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+AID V++E N+TVL+DEFIA R+GLIPL S ++ +++ YSRDC C D C +CSV TL
Sbjct: 44 LAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 102
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+ T +V + DL V + RN + + E + +LI KLRKGQEL+L
Sbjct: 103 AFGESESTTNVYSKDL----VIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 158
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-P 175
AKKG KEHAKW P A + FEYDP N ++HT + EWP+S+ E ++ +E P
Sbjct: 159 AKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDP 218
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ---TQLAHDRV 224
++++A+ + ++ NVES G++ + +V+ G+ L++K++++ TQ+ D+V
Sbjct: 219 FDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQDKV 270
>TAIR|locus:2047168 [details] [associations]
symbol:NRPB3 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IPI] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IPI] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IPI] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005730 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03011
EMBL:AC006920 GO:GO:0000418 GO:GO:0000419 GO:GO:0005665
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:L34770 EMBL:AY063965 EMBL:AY096406 IPI:IPI00544466 PIR:S71176
RefSeq:NP_179145.1 UniGene:At.27427 ProteinModelPortal:Q39211
SMR:Q39211 IntAct:Q39211 STRING:Q39211 PaxDb:Q39211 PRIDE:Q39211
EnsemblPlants:AT2G15430.1 GeneID:816035 KEGG:ath:AT2G15430
TAIR:At2g15430 HOGENOM:HOG000230844 InParanoid:Q39211 OMA:KWQAGVA
PhylomeDB:Q39211 ProtClustDB:CLSN2683582 Genevestigator:Q39211
GermOnline:AT2G15430 Uniprot:Q39211
Length = 319
Score = 380 (138.8 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 80/148 (54%), Positives = 102/148 (68%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDF---CSECSVEF 57
+AID V++E NS+VL+DEFIA R+GLIPLTS+ + + +SRDC D C CSVEF
Sbjct: 48 VAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEF 106
Query: 58 TLDVKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRL 117
L KCV DQT VT+ DL S D V PV D+ +++ E I+IVKLR+GQEL+L
Sbjct: 107 RLSSKCVTDQTLDVTSRDLYSADPTVTPVDF-TIDSSVSDSSEHKGIIIVKLRRGQELKL 165
Query: 118 RAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
RA A+KG GK+HAKW+P A V F Y+PD
Sbjct: 166 RAIARKGIGKDHAKWSPAATVTFMYEPD 193
Score = 76 (31.8 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDRV 224
K + + F VES GA+K +V+ + +LKQKL ++ L+ D V
Sbjct: 262 KDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVR--LSDDTV 303
Score = 74 (31.1 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 238 KPNKYFFNVESAGALKPENIVIMGVTVLKQKL 269
K + + F VES GA+K +V+ + +LKQKL
Sbjct: 262 KDDSFIFTVESTGAVKASQLVLNAIDLLKQKL 293
>ASPGD|ASPL0000005413 [details] [associations]
symbol:AN6252 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 EMBL:AACD01000107
EMBL:BN001301 GO:GO:0003899 KO:K03011 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 OrthoDB:EOG4DV8VZ RefSeq:XP_663856.1
ProteinModelPortal:Q5AZM8 SMR:Q5AZM8 STRING:Q5AZM8
EnsemblFungi:CADANIAT00006740 GeneID:2870835 KEGG:ani:AN6252.2
OMA:EPFDYNA Uniprot:Q5AZM8
Length = 333
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 91/218 (41%), Positives = 129/218 (59%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAID V++E NS+VL DE +A R+GLIPL S + Y+RDC C D C+ CSV +L
Sbjct: 50 MAIDIVEVEKNSSVLPDEMLAHRLGLIPLDSKNCDQDVEYTRDCECEDHCARCSVTLSLH 109
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
+C D+ V DL T R D + G LI KLR+GQEL++
Sbjct: 110 ARCTSDEIMRVYARDLVITGERANEWVGNPVITDPDGNGP----LICKLRRGQELKMTCI 165
Query: 121 AKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF---PKP-DEWPKSEYSELDETQH-EAP 175
AKKG KEH+KW PTA + FEYDP N++RH + P EWP S + + + P
Sbjct: 166 AKKGIAKEHSKWAPTAAIGFEYDPHNNLRHVDYWYEEDPVKEWPVSHNAAWEPAAPADQP 225
Query: 176 YNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLS 213
++++A+PN ++ +VES G L+P+ I+ G+TVL++KL+
Sbjct: 226 FDYDAQPNNFYIDVESIGNLEPDMIIQQGITVLQRKLA 263
>POMBASE|SPCC1442.10c [details] [associations]
symbol:rpb3 "RNA polymerase II subunit 3" species:4896
"Schizosaccharomyces pombe" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IC] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IDA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
PomBase:SPCC1442.10c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0006366 GO:GO:0003899
KO:K03011 GO:GO:0005665 PDB:3H0G PDBsum:3H0G eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 OMA:NQPTVKI EMBL:D15070 EMBL:D50661
EMBL:D50662 PIR:S43201 PIR:T40975 RefSeq:NP_588324.1
ProteinModelPortal:P37382 SMR:P37382 IntAct:P37382
MINT:MINT-1213878 STRING:P37382 EnsemblFungi:SPCC1442.10c.1
GeneID:2538816 KEGG:spo:SPCC1442.10c OrthoDB:EOG4DV8VZ
EvolutionaryTrace:P37382 NextBio:20799998 Uniprot:P37382
Length = 297
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 90/234 (38%), Positives = 140/234 (59%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDR----ILYSRDCTCVDFCSECSVE 56
+AID V++ N++V+ DEF+A R+G+IPL S + + + Y+R+C C +C +CSVE
Sbjct: 43 VAIDLVEINVNTSVMPDEFLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVE 102
Query: 57 FTLDVKCVDDQTRHVTTADL--KSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQE 114
L+ KC + T + DL S + P+ AD G LI KLRK QE
Sbjct: 103 LFLNAKCTGEGTMEIYARDLVVSSNSSLGHPIL-----ADPKSRGP----LICKLRKEQE 153
Query: 115 LRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLF---PKPD-EWPKSEYSELDET 170
+ LR AKKG KEHAKW+PT+ V FEYDP N ++HT + D EWPKS+ ++ +E
Sbjct: 154 ISLRCIAKKGIAKEHAKWSPTSAVAFEYDPWNKLQHTDYWFENDADAEWPKSKNADWEEP 213
Query: 171 QHEA-PYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHDR 223
E P+N++ +P +++ +VES G++ P I++ G+ +L++KL+ L L ++
Sbjct: 214 PREGEPFNFQEEPRRFYMDVESVGSIPPNEIMVQGLRILQEKLAVLVRDLDEEQ 267
>TAIR|locus:2047198 [details] [associations]
symbol:NRPE3B species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000419 "DNA-directed RNA polymerase V complex" evidence=IPI]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IPI] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 KO:K03011 EMBL:AC006920 GO:GO:0000419 GO:GO:0005665
eggNOG:COG0202 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
HOGENOM:HOG000230844 ProtClustDB:CLSN2683582 EMBL:L34771
EMBL:BT005715 EMBL:BT006072 IPI:IPI00547850 PIR:E84528 PIR:S71177
RefSeq:NP_179142.1 UniGene:At.40419 ProteinModelPortal:Q39212
SMR:Q39212 IntAct:Q39212 STRING:Q39212 PaxDb:Q39212 PRIDE:Q39212
EnsemblPlants:AT2G15400.1 GeneID:816032 KEGG:ath:AT2G15400
TAIR:At2g15400 InParanoid:Q39212 OMA:GFVYYKY PhylomeDB:Q39212
Genevestigator:Q39212 GermOnline:AT2G15400 Uniprot:Q39212
Length = 319
Score = 354 (129.7 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 76/149 (51%), Positives = 98/149 (65%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVD-RILYS-RDCTCVDFCSECSVEFT 58
MAI V++E NS+VL+DEFIA R+ LIPLTS+ + R DC + C CSVEF
Sbjct: 48 MAIHLVKIEVNSSVLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFP 107
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPV--TSRNRDADMNEYGETDDILIVKLRKGQELR 116
L KCV DQT VT+ DL S D V PV TS + +D +E+ I+I KLR+GQEL+
Sbjct: 108 LSAKCVTDQTLDVTSRDLYSADPTVTPVDFTSNSSTSDSSEH---KGIIIAKLRRGQELK 164
Query: 117 LRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
L+A A+KG GK+HAKW+P A V + Y+PD
Sbjct: 165 LKALARKGIGKDHAKWSPAATVTYMYEPD 193
Score = 78 (32.5 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 181 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
K + + F VES GALK +V+ + +LKQKL ++
Sbjct: 262 KHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIR 297
Score = 78 (32.5 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 238 KPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 273
K + + F VES GALK +V+ + +LKQKL ++
Sbjct: 262 KHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIR 297
>TAIR|locus:2025855 [details] [associations]
symbol:ATRPAC42 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 SMART:SM00662
EMBL:CP002684 GO:GO:0005730 GO:GO:0003677 GO:GO:0006351
EMBL:AC079675 GO:GO:0003899 KO:K03027 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 EMBL:AK226775 IPI:IPI00518314
PIR:H96633 RefSeq:NP_176282.1 RefSeq:NP_849833.1 UniGene:At.8270
ProteinModelPortal:Q9C6C2 SMR:Q9C6C2 STRING:Q9C6C2 PRIDE:Q9C6C2
EnsemblPlants:AT1G60850.1 EnsemblPlants:AT1G60850.2 GeneID:842377
KEGG:ath:AT1G60850 TAIR:At1g60850 InParanoid:Q9C6C2 OMA:EHAKHQG
PhylomeDB:Q9C6C2 ProtClustDB:CLSN2681820 Genevestigator:Q9C6C2
Uniprot:Q9C6C2
Length = 375
Score = 120 (47.3 bits), Expect = 4.2e-14, Sum P(3) = 4.2e-14
Identities = 23/47 (48%), Positives = 29/47 (61%)
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMR 149
DILI KL GQE+ L A+A KG GK HAKW+P + P+ +R
Sbjct: 231 DILIAKLAPGQEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLR 277
Score = 100 (40.3 bits), Expect = 4.2e-14, Sum P(3) = 4.2e-14
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE +A R+GLIP+ +D + L D + ++ F L
Sbjct: 112 MAIEKVLIAYNTSVIIDEVLAHRMGLIPIAADPRLFEYLSEHD----QANEKNTIVFKLH 167
Query: 61 VKCVDDQTR-HVTTADLK 77
VKC ++ R V T+DLK
Sbjct: 168 VKCPKNRPRLKVLTSDLK 185
Score = 64 (27.6 bits), Expect = 4.2e-14, Sum P(3) = 4.2e-14
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 183 NKYFFNVESAGALKPENIVIMGVTVLKQK 211
N + FN+ES G+L PE + V +L+ K
Sbjct: 340 NHFIFNIESTGSLPPEVLFTEAVKILEAK 368
Score = 64 (27.6 bits), Expect = 4.2e-14, Sum P(3) = 4.2e-14
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 240 NKYFFNVESAGALKPENIVIMGVTVLKQK 268
N + FN+ES G+L PE + V +L+ K
Sbjct: 340 NHFIFNIESTGSLPPEVLFTEAVKILEAK 368
>FB|FBgn0031657 [details] [associations]
symbol:CG3756 species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;NAS] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=NAS] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=NAS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=NAS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
SMART:SM00662 GO:GO:0005875 EMBL:AE014134 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 eggNOG:COG0202
GeneTree:ENSGT00550000075060 KO:K03027 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 OMA:TVSRECL EMBL:AY119625
RefSeq:NP_608885.1 UniGene:Dm.30765 SMR:Q9VMX3 IntAct:Q9VMX3
MINT:MINT-1550361 STRING:Q9VMX3 EnsemblMetazoa:FBtr0078994
GeneID:33712 KEGG:dme:Dmel_CG3756 UCSC:CG3756-RA
FlyBase:FBgn0031657 InParanoid:Q9VMX3 OrthoDB:EOG4X95ZS
GenomeRNAi:33712 NextBio:784915 Uniprot:Q9VMX3
Length = 333
Score = 155 (59.6 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 49/156 (31%), Positives = 80/156 (51%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GL+PL +D + Y + + + ++EF L
Sbjct: 79 MAIEKVYIYNNTSIIQDEVLAHRMGLLPLRADPRL--FAYRTEESTEAGTEQDTLEFELK 136
Query: 61 VKCVD--DQTRHVTTADLKSTDARV----VPVTSRNRDADMNEYGET------DDILIVK 108
VKC D + + D + +V + + + A + Y E+ DDILI +
Sbjct: 137 VKCSRRRDAGKDQSNFDDIYKNHKVYSGHLKWLPKGKQAQI--YSESAVNCIHDDILIAQ 194
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
LR G EL LR A KG G++HAK++P A + P
Sbjct: 195 LRPGHELDLRLVAVKGLGRDHAKFSPVATATYRLLP 230
Score = 79 (32.9 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHE 279
Y F+VES GALKP+ I + V VLK+K L ++ E
Sbjct: 296 YIFSVESVGALKPDVIFLEAVKVLKRKCRALIDEIEAE 333
Score = 77 (32.2 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQK 211
Y F+VES GALKP+ I + V VLK+K
Sbjct: 296 YIFSVESVGALKPDVIFLEAVKVLKRK 322
>TAIR|locus:2036494 [details] [associations]
symbol:RPAC43 "RNA polymerase I subunit 43" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0046983
"protein dimerization activity" evidence=IEA] [GO:0006626 "protein
targeting to mitochondrion" evidence=RCA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003677
GO:GO:0006351 EMBL:AC002292 GO:GO:0003899 eggNOG:COG0202
HOGENOM:HOG000230845 KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 OMA:TVSRECL EMBL:L34773 EMBL:AF386969 EMBL:BT001161
IPI:IPI00538979 PIR:D96631 RefSeq:NP_176261.1 UniGene:At.8271
ProteinModelPortal:Q39216 SMR:Q39216 STRING:Q39216 PaxDb:Q39216
PRIDE:Q39216 EnsemblPlants:AT1G60620.1 GeneID:842356
KEGG:ath:AT1G60620 TAIR:At1g60620 InParanoid:Q39216
PhylomeDB:Q39216 ProtClustDB:CLSN2914384 ArrayExpress:Q39216
Genevestigator:Q39216 Uniprot:Q39216
Length = 385
Score = 118 (46.6 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 23/43 (53%), Positives = 28/43 (65%)
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
DILI KL GQE+ L A+A KG GK HAKW+P A + P+
Sbjct: 238 DILIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 280
Score = 103 (41.3 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++V+ DE +A R+GLIP+ +D + L D + ++ F L
Sbjct: 119 MAIEKVYVANNTSVIQDEVLAHRLGLIPIAADPRLFEYLSENDQPN----EKNTIVFKLH 174
Query: 61 VKCVD-DQTRHVTTADLK 77
VKC+ D R V T++LK
Sbjct: 175 VKCLKGDPRRKVLTSELK 192
Score = 56 (24.8 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 183 NKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 220
N + F +ES G+ PE + V +L+ K + ++L+
Sbjct: 348 NHFIFTIESTGSQPPEVLFNEAVKILEDKCERVISELS 385
Score = 56 (24.8 bits), Expect = 2.8e-13, Sum P(3) = 2.8e-13
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 240 NKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLA 277
N + F +ES G+ PE + V +L+ K + ++L+
Sbjct: 348 NHFIFTIESTGSQPPEVLFNEAVKILEDKCERVISELS 385
>SGD|S000006314 [details] [associations]
symbol:RPC40 "RNA polymerase subunit AC40" species:4932
"Saccharomyces cerevisiae" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=IC] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
SGD:S000006314 GO:GO:0003677 EMBL:BK006949 GO:GO:0006360
EMBL:U32445 GO:GO:0005736 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 Reactome:REACT_87991 GO:GO:0042797
eggNOG:COG0202 GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845
KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
OMA:TVSRECL OrthoDB:EOG4VX5F0 EMBL:M15499 PIR:A25968
RefSeq:NP_015435.1 ProteinModelPortal:P07703 SMR:P07703 DIP:DIP-17N
IntAct:P07703 MINT:MINT-395916 STRING:P07703 PaxDb:P07703
PeptideAtlas:P07703 EnsemblFungi:YPR110C GeneID:856226
KEGG:sce:YPR110C CYGD:YPR110c NextBio:981464 Genevestigator:P07703
GermOnline:YPR110C Uniprot:P07703
Length = 335
Score = 150 (57.9 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 48/157 (30%), Positives = 77/157 (49%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD---FCSECSVEF 57
+A ++V N++V+ DE +A RIGL+PL D D + + D D F E ++
Sbjct: 78 VAAEYVYFFNNTSVIQDEVLAHRIGLVPLKVDP--DMLTWV-DSNLPDDEKFTDENTIVL 134
Query: 58 TLDVKCV--DDQTRHVT-------TADLKSTDARVVPVTSRNRD-ADMNEYGETDDILIV 107
+L+VKC D + T A + + D + P ++ AD DIL+
Sbjct: 135 SLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLKFEPQGRQSTTFADCPVVPADPDILLA 194
Query: 108 KLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
KLR GQE+ L+A+ G G +HAK++P + + P
Sbjct: 195 KLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLP 231
Score = 84 (34.6 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 183 NKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
N + FNVESAGA+ PE I V +LK K L+
Sbjct: 296 NHFIFNVESAGAMTPEEIFFKSVRILKNKAEYLK 329
Score = 84 (34.6 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 240 NKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 273
N + FNVESAGA+ PE I V +LK K L+
Sbjct: 296 NHFIFNVESAGAMTPEEIFFKSVRILKNKAEYLK 329
>POMBASE|SPBC1289.07c [details] [associations]
symbol:rpc40 "DNA-directed RNA polymerase I and III
subunit Rpc40" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=IGI]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=IGI] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=IGI] [GO:0006995 "cellular
response to nitrogen starvation" evidence=IMP] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IGI]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 PomBase:SPBC1289.07c GO:GO:0005829
GO:GO:0070317 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006995 GO:GO:0006383 GO:GO:0006360 GO:GO:0005736
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0202 HOGENOM:HOG000230845
KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:AF082512 EMBL:AB021859 PIR:T39358 RefSeq:NP_596831.1
ProteinModelPortal:O94616 DIP:DIP-29538N STRING:O94616
EnsemblFungi:SPBC1289.07c.1 GeneID:2539663 KEGG:spo:SPBC1289.07c
OMA:TVSRECL OrthoDB:EOG4VX5F0 NextBio:20800817 Uniprot:O94616
Length = 348
Score = 149 (57.5 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 47/158 (29%), Positives = 80/158 (50%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVV----DRILYSRDCTCVDFCSECSVE 56
+A ++V + N++++ DE ++ RIGL+P+++D + L ++ T D+ + V
Sbjct: 84 LAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKWFQHPLPGQEATHTDYDT---VV 140
Query: 57 FTLDVKC-------VD--DQTRHVTTADLKSTDARVVPV-TSRNRDADMNEYGETDDILI 106
F+L+ KC D D R +++ S D P R AD DI++
Sbjct: 141 FSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQGRQEERFADNPIRVVNPDIVV 200
Query: 107 VKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
KLR GQE+ L A+A G G++HAK++P A + P
Sbjct: 201 AKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLP 238
Score = 74 (31.1 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQLAHELSHD 283
Y F+VES G +KP+ + I + VLK K +++ L + +S D
Sbjct: 308 YLFSVESTGIMKPDVLFIKSIAVLKSKCLAVKSSLQN-ISSD 348
Score = 72 (30.4 bits), Expect = 8.3e-12, Sum P(2) = 8.3e-12
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
Y F+VES G +KP+ + I + VLK K +++ L
Sbjct: 308 YLFSVESTGIMKPDVLFIKSIAVLKSKCLAVKSSL 342
>ZFIN|ZDB-GENE-040426-1495 [details] [associations]
symbol:polr1c "polymerase (RNA) I polypeptide C"
species:7955 "Danio rerio" [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 ZFIN:ZDB-GENE-040426-1495
GO:GO:0003677 GO:GO:0006351 EMBL:AL928951 GO:GO:0003899
eggNOG:COG0202 GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845
HOVERGEN:HBG017743 OMA:GKCQRFL OrthoDB:EOG47SSF0
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 IPI:IPI00491988
Ensembl:ENSDART00000128246 InParanoid:A2ATX1 Uniprot:A2ATX1
Length = 362
Score = 157 (60.3 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 45/162 (27%), Positives = 84/162 (51%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N++++ DE +A R+GL+P+ +D R+ R+ + +++ L
Sbjct: 103 MAIEKVFIYNNTSIIQDEILAHRLGLVPIKADP---RLFEYRNSEDQEGTEIDTIQLQLK 159
Query: 61 VKCVDDQTRHVTTADLK---------STDARVVPVTSR-NRDADMNEYGETDDILIVKLR 110
VKC + ++D K S D + +P+ ++ + AD DIL+ ++R
Sbjct: 160 VKCTRNPRAPKDSSDPKELYLNHMIYSGDIKWLPIGNQADVFADAKIGPVHGDILLAQVR 219
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTL 152
GQEL + + KG GK+HAK++P A + P+ ++ T+
Sbjct: 220 PGQELDIVMHCVKGIGKDHAKFSPVATASYRLLPEITLLQTI 261
Score = 65 (27.9 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 23/88 (26%), Positives = 39/88 (44%)
Query: 191 SAGALKPENIVIMGVT-VLKQKLSNLQTQ-LAHDRVFYVINEAPYNWEAKPNKYFFNVES 248
S G ++ EN+ V V+ +L + L HD + ++ + + F+VES
Sbjct: 274 SPGVIELENVNGRKVAKVVNSRLDTCSREVLRHDDLKSLVKLGRVR-----DHFIFSVES 328
Query: 249 AGALKPENIVIMGVTVLKQKLSNLQTQL 276
G L P+ +V + VL K T+L
Sbjct: 329 TGILPPDVLVTEAINVLMSKCQKFLTEL 356
Score = 63 (27.2 bits), Expect = 8.4e-12, Sum P(2) = 8.4e-12
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+ F+VES G L P+ +V + VL K T+L
Sbjct: 322 FIFSVESTGILPPDVLVTEAINVLMSKCQKFLTEL 356
>DICTYBASE|DDB_G0282339 [details] [associations]
symbol:rpa5 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISS] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 dictyBase:DDB_G0282339
EMBL:AAFI02000047 GenomeReviews:CM000152_GR GO:GO:0003677
GO:GO:0006383 GO:GO:0006360 GO:GO:0005736 GO:GO:0005666
GO:GO:0003899 eggNOG:COG0202 KO:K03027 OMA:GKCQRFL
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
RefSeq:XP_640267.1 ProteinModelPortal:Q54SN4 STRING:Q54SN4
PRIDE:Q54SN4 EnsemblProtists:DDB0216288 GeneID:8623528
KEGG:ddi:DDB_G0282339 ProtClustDB:CLSZ2729016 Uniprot:Q54SN4
Length = 345
Score = 169 (64.5 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 47/149 (31%), Positives = 73/149 (48%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MAI+ V + N+++L DE +A R+G+IP+ VD ++ ++ +E ++ F L
Sbjct: 97 MAIEKVYIINNTSILQDEVLAHRLGMIPIK----VDPRKFNFKLPNKEYTAEDTLIFQLK 152
Query: 61 VKCVDDQ-TRHVTTADLKSTDARVVPVTSRNRDADMNEYGET----DDILIVKLRKGQEL 115
VKC D T + S VP T + NE DDI I+KLR GQ +
Sbjct: 153 VKCEKDSVTGKIINETALSKHLIWVP-TQDQEEMFPNEEDRPRPMEDDIPIMKLRPGQVI 211
Query: 116 RLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
++ Y +K G+EH KW+P + P
Sbjct: 212 DIQCYCEKNIGREHIKWSPVCTASYRLQP 240
Score = 48 (22.0 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+ F++ES GALK I + + +K + ++ +
Sbjct: 306 FIFSIESTGALKSREIFQEAIKIFIEKCNIVEESI 340
Score = 48 (22.0 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ F++ES GALK I + + +K + ++ +
Sbjct: 306 FIFSIESTGALKSREIFQEAIKIFIEKCNIVEESI 340
>UNIPROTKB|F1LXY3 [details] [associations]
symbol:Polr1c "Protein Polr1c" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
IPI:IPI00948748 Ensembl:ENSRNOT00000067036 RGD:1309689
ArrayExpress:F1LXY3 Uniprot:F1LXY3
Length = 260
Score = 154 (59.3 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 45/155 (29%), Positives = 77/155 (49%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
+A++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 1 VAVEKVLVYNNTSIVQDEILAHRLGLIPILADP---RLFEYRNPGEEEGTEIDTLQFRLQ 57
Query: 61 VKCVDDQTRHVTTADLKS------TDARVVPVTSRNRDADMNEYGET----DDILIVKLR 110
V+C + + ++D R + AD+ G DDILI +LR
Sbjct: 58 VRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTVRPVHDDILIAQLR 117
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
GQE+ L + KG GK+HAK++P A + PD
Sbjct: 118 PGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPD 152
Score = 56 (24.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
Y F+VES G L P+ +V + +L K +L
Sbjct: 220 YIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 254
Score = 56 (24.8 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
Y F+VES G L P+ +V + +L K +L
Sbjct: 220 YIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 254
>CGD|CAL0005950 [details] [associations]
symbol:RPC40 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IEA] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IEA] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IEA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 CGD:CAL0005950 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000094 EMBL:AACQ01000093 GO:GO:0003899
eggNOG:COG0202 KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 RefSeq:XP_714923.1 RefSeq:XP_714986.1
ProteinModelPortal:Q59ZF5 STRING:Q59ZF5 GeneID:3643382
GeneID:3643427 KEGG:cal:CaO19.11048 KEGG:cal:CaO19.3564
Uniprot:Q59ZF5
Length = 369
Score = 152 (58.6 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 49/161 (30%), Positives = 78/161 (48%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVD--FCSECSVEFT 58
+A + V + N++V+ DE +A RIGLIP D D++ + + ++ F + ++ +
Sbjct: 113 VAAETVYMFMNTSVIQDEVLAQRIGLIPWKIDP--DKLTWVDETVDINDRFTEDNTIVLS 170
Query: 59 LDVKCVDDQTRHVTTADLKSTDARVVPVTSR--NRDADMNEYGETD-------------D 103
LDV C + H A STD R + S +D +G + D
Sbjct: 171 LDVAC--SKNPH---APKNSTDPRELYKNSHVYAKDFKFEPHGNQEEKFKDTPVVPCDPD 225
Query: 104 ILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
IL+ KLR GQE+ LRA+ G G +HAK++P A + P
Sbjct: 226 ILLAKLRPGQEISLRAHCVLGIGSDHAKFSPVATASYRLLP 266
Score = 67 (28.6 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 216
+ FNVES GA+ P I V +LK K L+
Sbjct: 332 FIFNVESTGAMPPAEIFFKSVRLLKNKAEYLR 363
Score = 67 (28.6 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQ 273
+ FNVES GA+ P I V +LK K L+
Sbjct: 332 FIFNVESTGAMPPAEIFFKSVRLLKNKAEYLR 363
>UNIPROTKB|E1C548 [details] [associations]
symbol:POLR1C "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 CTD:9533
GeneTree:ENSGT00550000075060 KO:K03027 OMA:GKCQRFL
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:AADN02011864 IPI:IPI00572554 RefSeq:XP_419502.1
UniGene:Gga.1059 Ensembl:ENSGALT00000016848 GeneID:421452
KEGG:gga:421452 NextBio:20824218 Uniprot:E1C548
Length = 346
Score = 154 (59.3 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 51/170 (30%), Positives = 85/170 (50%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVFVYNNTSIVQDEILAHRLGLIPIRADP---RLFEYRNQGDEEGTEIDTLQFQLK 143
Query: 61 VKCVDDQTRHVTTAD---------LKSTDARVVPVTSRNR---DADMNEYGETDDILIVK 108
+KC + ++D + S VP+ ++ DAD DDILI
Sbjct: 144 IKCSRNPQAAKESSDPNELYFNHKVYSKHMTWVPLGNQTDLFPDADFRPVH--DDILIAL 201
Query: 109 LRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDE 158
LR GQE+ + + KG GK+HAK++P A + PD ++ L P DE
Sbjct: 202 LRPGQEIDVLMHCVKGIGKDHAKFSPVATASYRLLPDITL---LQPVEDE 248
Score = 63 (27.2 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 183 NKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
N Y F+VES G L P+ +V + +L K +L
Sbjct: 304 NHYIFSVESTGILPPDVLVTEAIKILMGKCQRFLNEL 340
Score = 63 (27.2 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 240 NKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
N Y F+VES G L P+ +V + +L K +L
Sbjct: 304 NHYIFSVESTGILPPDVLVTEAIKILMGKCQRFLNEL 340
>UNIPROTKB|Q5RJK9 [details] [associations]
symbol:Polr1c "Protein Polr1c" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CH473987 CTD:9533 eggNOG:COG0202 GeneTree:ENSGT00550000075060
HOGENOM:HOG000230845 HOVERGEN:HBG017743 KO:K03027 OrthoDB:EOG47SSF0
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 OMA:TVSRECL
RGD:1309689 EMBL:BC086597 IPI:IPI00373754 RefSeq:NP_001008331.1
UniGene:Rn.107990 STRING:Q5RJK9 Ensembl:ENSRNOT00000025787
GeneID:301246 KEGG:rno:301246 InParanoid:Q5RJK9 NextBio:648381
Genevestigator:Q5RJK9 Uniprot:Q5RJK9
Length = 346
Score = 158 (60.7 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 46/155 (29%), Positives = 77/155 (49%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPILADP---RLFEYRNPGEEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKS------TDARVVPVTSRNRDADMNEYGET----DDILIVKLR 110
V+C + + ++D R + AD+ G DDILI +LR
Sbjct: 144 VRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTVRPVHDDILIAQLR 203
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
GQE+ L + KG GK+HAK++P A + PD
Sbjct: 204 PGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLPD 238
Score = 56 (24.8 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
Y F+VES G L P+ +V + +L K +L
Sbjct: 306 YIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340
Score = 56 (24.8 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
Y F+VES G L P+ +V + +L K +L
Sbjct: 306 YIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340
>WB|WBGene00019275 [details] [associations]
symbol:rpac-40 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 SMART:SM00662 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 eggNOG:COG0202
GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845 KO:K03027
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 OMA:TVSRECL
EMBL:FO081035 RefSeq:NP_504166.2 ProteinModelPortal:Q9UAY9
SMR:Q9UAY9 STRING:Q9UAY9 PaxDb:Q9UAY9 EnsemblMetazoa:H43I07.2
GeneID:178823 KEGG:cel:CELE_H43I07.2 UCSC:H43I07.2 CTD:178823
WormBase:H43I07.2 InParanoid:Q9UAY9 NextBio:902702 Uniprot:Q9UAY9
Length = 366
Score = 119 (46.9 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 35/121 (28%), Positives = 56/121 (46%)
Query: 57 FTLDVKCVDDQTRHVTTADLK------STDARV---VPVTSRNRDADMNEYGE--TDDIL 105
F ++V C ++ T D K S +R VP+ + + +DDIL
Sbjct: 160 FKINVSCTKNRNAVPTATDPKQLYHNSSVYSRAFEWVPIADQKTQFTEEAHPRMVSDDIL 219
Query: 106 IVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRHTLFPKPDEWPKSEYS 165
+ KLR GQE+ +A KG G++HAK++P A + P + + + E KS +S
Sbjct: 220 VAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLPTIRLNAEISGEAAERLKSVFS 279
Query: 166 E 166
E
Sbjct: 280 E 280
Score = 71 (30.1 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSD 32
MA++ + L N++V+ DE + R+GL+PL D
Sbjct: 94 MALEKIYLYQNTSVIQDEVLCHRLGLLPLRVD 125
Score = 65 (27.9 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+ F+VES GALK +V+ V++ K +L+ Q+
Sbjct: 327 FIFSVESTGALKSSELVVEACKVMEIKCRSLRKQI 361
Score = 65 (27.9 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ F+VES GALK +V+ V++ K +L+ Q+
Sbjct: 327 FIFSVESTGALKSSELVVEACKVMEIKCRSLRKQI 361
>UNIPROTKB|F1RRJ4 [details] [associations]
symbol:POLR1C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046983 "protein dimerization activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CU928765 GeneTree:ENSGT00550000075060 OMA:GKCQRFL
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
Ensembl:ENSSSCT00000028506 ArrayExpress:F1RRJ4 Uniprot:F1RRJ4
Length = 351
Score = 156 (60.0 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 46/155 (29%), Positives = 76/155 (49%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 92 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNLGDEEGTEIDTLQFRLQ 148
Query: 61 VKCVDDQTRHVTTADLKS------TDARVVPVTSRNRDADMNEYGET----DDILIVKLR 110
V+C + + ++D R + AD+ G DDILI +LR
Sbjct: 149 VRCTRNPSAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLR 208
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
GQE+ L KG GK+HAK++P A + PD
Sbjct: 209 PGQEIDLLMQCVKGIGKDHAKFSPVATASYRLLPD 243
Score = 57 (25.1 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
Y F+VES G L P+ +V + VL K +L
Sbjct: 311 YIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 345
Score = 57 (25.1 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
Y F+VES G L P+ +V + VL K +L
Sbjct: 311 YIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 345
>UNIPROTKB|E2RH57 [details] [associations]
symbol:POLR1C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 CTD:9533 GeneTree:ENSGT00550000075060 KO:K03027
OMA:GKCQRFL Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257
EMBL:AAEX03008344 RefSeq:XP_532147.1 ProteinModelPortal:E2RH57
Ensembl:ENSCAFT00000002964 GeneID:474912 KEGG:cfa:474912
NextBio:20850849 Uniprot:E2RH57
Length = 346
Score = 154 (59.3 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 46/155 (29%), Positives = 77/155 (49%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDDEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKS------TDARVVPVTSRNRDADMNEYGET----DDILIVKLR 110
V+C + ++D +R + AD+ G DDILI +LR
Sbjct: 144 VRCTRNPHAAKDSSDPNELYVNHKVYSRHMTWVPLGNQADLFPEGTIRPVHDDILIAQLR 203
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
GQE+ L + KG GK+HAK++P A + PD
Sbjct: 204 PGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 238
Score = 57 (25.1 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
Y F+VES G L P+ +V + VL K +L
Sbjct: 306 YIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
Score = 57 (25.1 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
Y F+VES G L P+ +V + VL K +L
Sbjct: 306 YIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>UNIPROTKB|O15160 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=TAS]
[GO:0006361 "transcription initiation from RNA polymerase I
promoter" evidence=TAS] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=TAS] [GO:0006363 "termination
of RNA polymerase I transcription" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0005654 GO:GO:0003677 Reactome:REACT_1788
GO:GO:0006363 GO:GO:0006362 GO:GO:0006361 GO:GO:0005736
GO:GO:0003899 GO:GO:0006386 GO:GO:0006385 EMBL:AL355802
CleanEx:HS_POLR1E CTD:9533 eggNOG:COG0202 HOGENOM:HOG000230845
HOVERGEN:HBG017743 KO:K03027 OMA:GKCQRFL Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 EMBL:AF008442 EMBL:AF047441
EMBL:BC008863 IPI:IPI00005179 IPI:IPI00217386 RefSeq:NP_976035.1
UniGene:Hs.584839 ProteinModelPortal:O15160 SMR:O15160
DIP:DIP-27587N IntAct:O15160 MINT:MINT-1137932 STRING:O15160
PhosphoSite:O15160 REPRODUCTION-2DPAGE:IPI00217386
SWISS-2DPAGE:O15160 PaxDb:O15160 PRIDE:O15160 DNASU:9533
Ensembl:ENST00000304004 Ensembl:ENST00000372389 GeneID:9533
KEGG:hsa:9533 UCSC:uc003ovn.3 UCSC:uc003ovo.2 GeneCards:GC06P043484
H-InvDB:HIX0005907 HGNC:HGNC:20194 HPA:HPA031010 MIM:248390
MIM:610060 neXtProt:NX_O15160 Orphanet:861 PharmGKB:PA134882004
InParanoid:O15160 PhylomeDB:O15160 GenomeRNAi:9533 NextBio:35740
ArrayExpress:O15160 Bgee:O15160 CleanEx:HS_POLR1C
Genevestigator:O15160 GermOnline:ENSG00000171453 Uniprot:O15160
Length = 346
Score = 153 (58.9 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 46/155 (29%), Positives = 75/155 (48%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR------NRDADMNEYGET----DDILIVKLR 110
V+C + ++D T AD+ G DDILI +LR
Sbjct: 144 VRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLR 203
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
GQE+ L + KG GK+HAK++P A + PD
Sbjct: 204 PGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 238
Score = 57 (25.1 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
Y F+VES G L P+ +V + VL K +L
Sbjct: 306 YIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
Score = 57 (25.1 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
Y F+VES G L P+ +V + VL K +L
Sbjct: 306 YIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 340
>UNIPROTKB|Q32L22 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 EMBL:BC109803 IPI:IPI00709012
RefSeq:NP_001033213.1 UniGene:Bt.42189 ProteinModelPortal:Q32L22
STRING:Q32L22 PRIDE:Q32L22 Ensembl:ENSBTAT00000025246 GeneID:516337
KEGG:bta:516337 CTD:9533 eggNOG:COG0202
GeneTree:ENSGT00550000075060 HOGENOM:HOG000230845
HOVERGEN:HBG017743 InParanoid:Q32L22 KO:K03027 OMA:GKCQRFL
OrthoDB:EOG47SSF0 NextBio:20872197 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 Uniprot:Q32L22
Length = 346
Score = 153 (58.9 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 48/155 (30%), Positives = 78/155 (50%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEGGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKS--TDARVVP--VT--SRNRDADMNEYGET----DDILIVKLR 110
V+C + ++D + RV +T AD+ G DDILI +LR
Sbjct: 144 VRCTRNPHAAKDSSDPNELYVNHRVYTRHMTWVPLGNQADLFPEGAIRPVHDDILIAQLR 203
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDPD 145
GQE+ L + KG GK+HAK++P A + PD
Sbjct: 204 PGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 238
Score = 54 (24.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
+ F+VES G L P+ +V + VL K +L
Sbjct: 306 FIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 340
Score = 54 (24.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ F+VES G L P+ +V + VL K +L
Sbjct: 306 FIFSVESTGVLPPDVLVSEAIKVLMGKCQRFLDEL 340
>MGI|MGI:103288 [details] [associations]
symbol:Polr1c "polymerase (RNA) I polypeptide C"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] Reactome:REACT_78136
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 MGI:MGI:103288 GO:GO:0005654
GO:GO:0003677 GO:GO:0006351 EMBL:CH466559 GO:GO:0003899
Reactome:REACT_86751 CleanEx:MM_POLR1E CTD:9533 eggNOG:COG0202
GeneTree:ENSGT00550000075060 HOVERGEN:HBG017743 KO:K03027
OMA:GKCQRFL OrthoDB:EOG47SSF0 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 EMBL:D31966 EMBL:AK132114 EMBL:AK146240
IPI:IPI00816991 PIR:A55082 RefSeq:NP_033111.2 UniGene:Mm.3458
ProteinModelPortal:P52432 SMR:P52432 STRING:P52432
PhosphoSite:P52432 PaxDb:P52432 PRIDE:P52432
Ensembl:ENSMUST00000087026 GeneID:20016 KEGG:mmu:20016
InParanoid:Q3UJZ9 NextBio:297517 Bgee:P52432 Genevestigator:P52432
GermOnline:ENSMUSG00000067148 Uniprot:P52432
Length = 346
Score = 150 (57.9 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 45/154 (29%), Positives = 75/154 (48%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPILADP---RLFEYRNQGEEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKS------TDARVVPVTSRNRDADMNEYGET----DDILIVKLR 110
V+C + ++D R + AD+ G DDILI +LR
Sbjct: 144 VRCTRNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADVFPEGTIRPVHDDILIAQLR 203
Query: 111 KGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
GQE+ L + KG GK+HAK++P A + P
Sbjct: 204 PGQEIDLMMHCVKGIGKDHAKFSPVATASYRLLP 237
Score = 56 (24.8 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
Y F+VES G L P+ +V + +L K +L
Sbjct: 306 YIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340
Score = 56 (24.8 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
Y F+VES G L P+ +V + +L K +L
Sbjct: 306 YIFSVESTGVLPPDVLVSEAIKILMGKCRRFLDEL 340
>ASPGD|ASPL0000043748 [details] [associations]
symbol:AN2415 species:162425 "Emericella nidulans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0006995 "cellular response to nitrogen
starvation" evidence=IEA] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IEA] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IEA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IEA]
InterPro:IPR001514 InterPro:IPR009025 InterPro:IPR011261
InterPro:IPR011262 InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0003677 EMBL:BN001307
GO:GO:0006351 GO:GO:0003899 EMBL:AACD01000039 eggNOG:COG0202
HOGENOM:HOG000230845 KO:K03027 Gene3D:2.170.120.12 SUPFAM:SSF56553
SUPFAM:SSF55257 OMA:TVSRECL OrthoDB:EOG4VX5F0 RefSeq:XP_660019.1
ProteinModelPortal:Q5BAL5 STRING:Q5BAL5
EnsemblFungi:CADANIAT00009122 GeneID:2874697 KEGG:ani:AN2415.2
Uniprot:Q5BAL5
Length = 373
Score = 97 (39.2 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 103 DILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
DIL+ KLR GQ++ L + KG G +HAK++P A + P
Sbjct: 210 DILVAKLRPGQKIELEMHCIKGIGADHAKFSPVATATYRLMP 251
Score = 88 (36.0 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPL 29
+AI+WV + N++V+ DE +A R+GLIPL
Sbjct: 90 LAIEWVYIHNNTSVIQDEVLAQRLGLIPL 118
Score = 49 (22.3 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQK 211
+ FN+ES G + + + V VLK K
Sbjct: 334 FIFNIESTGQFDSDVLFLESVKVLKLK 360
Score = 49 (22.3 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 242 YFFNVESAGALKPENIVIMGVTVLKQK 268
+ FN+ES G + + + V VLK K
Sbjct: 334 FIFNIESTGQFDSDVLFLESVKVLKLK 360
>UNIPROTKB|G4MQN0 [details] [associations]
symbol:MGG_09284 "DNA-directed RNA polymerase I and III
subunit RPAC1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0043581 "mycelium development" evidence=IEP] InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446
SMART:SM00662 GO:GO:0003677 GO:GO:0006351 EMBL:CM001231
GO:GO:0043581 GO:GO:0003899 KO:K03027 Gene3D:2.170.120.12
SUPFAM:SSF56553 SUPFAM:SSF55257 RefSeq:XP_003709929.1
EnsemblFungi:MGG_09284T0 GeneID:2680208 KEGG:mgr:MGG_09284
Uniprot:G4MQN0
Length = 373
Score = 130 (50.8 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 46/160 (28%), Positives = 76/160 (47%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLT-SDEVVDRIL--YSRDCTC-VDFCSECS-V 55
+AI+ V + N++V+ DE +A R+GL+PL S E + + + + R T D + + V
Sbjct: 91 LAIERVFITNNTSVIQDEVLAQRLGLVPLKGSKEGLRKFMKPFKRTETGGFDNSFDFNTV 150
Query: 56 EFTLDVKCV---------DDQTRHVTTADLKSTDARVVPVTSRNR--DADMNEYGETDDI 104
L+VKC +D + ++ ++D VP + D DI
Sbjct: 151 NLRLNVKCTRNPDAKPGENDPNKAYIKPNVYASDIEFVPAGQQTDYFSGDGAIVPVNPDI 210
Query: 105 LIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVCFEYDP 144
LI KLR GQ + L +A G+G +HAK++P + P
Sbjct: 211 LIAKLRPGQGIDLEMHAHIGYGWDHAKFSPVCTASYRLMP 250
Score = 57 (25.1 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 167 LDETQHEAPYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
L + E + + + F++ESAG + + + + LK K L+ Q+
Sbjct: 316 LRHAEFEGKVKLGRRRDHFIFSIESAGQWDSDELFLASIAELKSKCKKLEEQV 368
Score = 56 (24.8 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
+ F++ESAG + + + + LK K L+ Q+
Sbjct: 334 FIFSIESAGQWDSDELFLASIAELKSKCKKLEEQV 368
>UNIPROTKB|E7EQB9 [details] [associations]
symbol:POLR1C "DNA-directed RNA polymerases I and III
subunit RPAC1" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] InterPro:IPR001514 InterPro:IPR009025
InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263
Pfam:PF01000 Pfam:PF01193 PROSITE:PS00446 SMART:SM00662
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 EMBL:AL355802
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 HGNC:HGNC:20194
IPI:IPI00552946 ProteinModelPortal:E7EQB9 SMR:E7EQB9
Ensembl:ENST00000372344 ArrayExpress:E7EQB9 Bgee:E7EQB9
Uniprot:E7EQB9
Length = 296
Score = 118 (46.6 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 42/145 (28%), Positives = 69/145 (47%)
Query: 1 MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
MA++ V + N++++ DE +A R+GLIP+ +D R+ R+ + +++F L
Sbjct: 87 MAVEKVLVYNNTSIVQDEILAHRLGLIPIHADP---RLFEYRNQGDEEGTEIDTLQFRLQ 143
Query: 61 VKCVDDQTRHVTTADLKSTDARVVPVTSR------NRDADMNEYGET----DDILIVKLR 110
V+C + ++D T AD+ G DDILI +LR
Sbjct: 144 VRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADLFPEGTIRPVHDDILIAQLR 203
Query: 111 KGQELRLRAYAKKGFGKEHAKW-NP 134
GQE+ L + KG GK+ A+ NP
Sbjct: 204 PGQEIDLLMHCVKGIGKKVARVANP 228
Score = 57 (25.1 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 185 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
Y F+VES G L P+ +V + VL K +L
Sbjct: 256 YIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 290
Score = 57 (25.1 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 242 YFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
Y F+VES G L P+ +V + VL K +L
Sbjct: 256 YIFSVESTGVLPPDVLVSEAIKVLMGKCRRFLDEL 290
>UNIPROTKB|Q57648 [details] [associations]
symbol:rpoD "DNA-directed RNA polymerase subunit D"
species:243232 "Methanocaldococcus jannaschii DSM 2661" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_00320 InterPro:IPR001514
InterPro:IPR009025 InterPro:IPR011261 InterPro:IPR011262
InterPro:IPR011263 InterPro:IPR022842 Pfam:PF01000 Pfam:PF01193
PROSITE:PS00446 SMART:SM00662 GO:GO:0003677 GO:GO:0006351
EMBL:L77117 GenomeReviews:L77117_GR GO:GO:0003899 eggNOG:COG0202
Gene3D:2.170.120.12 SUPFAM:SSF56553 SUPFAM:SSF55257 PIR:A64324
RefSeq:NP_247160.1 ProteinModelPortal:Q57648 IntAct:Q57648
GeneID:1451040 KEGG:mja:MJ_0192 KO:K03047 OMA:HAKWQPC
ProtClustDB:PRK14979 Uniprot:Q57648
Length = 191
Score = 92 (37.4 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 24/56 (42%), Positives = 30/56 (53%)
Query: 85 PVTSRNRDADMNEYGET--DDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGV 138
P T + D +E GE +I IVKL KGQ +++ A G GK HAKW P V
Sbjct: 89 PCTVYSSDLK-SENGEVAFKNIPIVKLGKGQRIQIECEAIPGIGKVHAKWQPCNAV 143
Score = 51 (23.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 174 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 219
A Y A FF VE+ G ++ E I+ V +LK K + QL
Sbjct: 142 AVYKQIADDEVEFF-VETFGQMEAEEILEEAVKILKNKAESFLQQL 186
Score = 51 (23.0 bits), Expect = 0.00064, Sum P(2) = 0.00064
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 231 APYNWEAKPNKYFFNVESAGALKPENIVIMGVTVLKQKLSNLQTQL 276
A Y A FF VE+ G ++ E I+ V +LK K + QL
Sbjct: 142 AVYKQIADDEVEFF-VETFGQMEAEEILEEAVKILKNKAESFLQQL 186
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 287 287 0.00087 115 3 11 22 0.39 34
33 0.43 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 40
No. of states in DFA: 609 (65 KB)
Total size of DFA: 227 KB (2123 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.03u 0.09s 23.12t Elapsed: 00:00:22
Total cpu time: 23.04u 0.09s 23.13t Elapsed: 00:00:22
Start: Thu Aug 15 13:46:22 2013 End: Thu Aug 15 13:46:44 2013