RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5332
         (287 letters)



>d1twfc2 d.181.1.1 (C:42-172) RPB3 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 131

 Score =  145 bits (368), Expect = 1e-44
 Identities = 63/134 (47%), Positives = 84/134 (62%), Gaps = 5/134 (3%)

Query: 1   MAIDWVQLEANSTVLSDEFIASRIGLIPLTSDEVVDRILYSRDCTCVDFCSECSVEFTLD 60
           +AID V++E N+TVL+DEFIA R+GLIPL S ++ +++ YSRDC C D C +CSV  TL 
Sbjct: 3   LAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQ 61

Query: 61  VKCVDDQTRHVTTADLKSTDARVVPVTSRNRDADMNEYGETDDILIVKLRKGQELRLRAY 120
                + T +V + DL         +  RN    + +  E + +LI KLRKGQEL+L   
Sbjct: 62  AFGESESTTNVYSKDLVIVS----NLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCV 117

Query: 121 AKKGFGKEHAKWNP 134
           AKKG  KEHAKW P
Sbjct: 118 AKKGIAKEHAKWGP 131


>d1twfc1 d.74.3.1 (C:3-41,C:173-268) RPB3 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 135

 Score =  114 bits (287), Expect = 2e-32
 Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 5/92 (5%)

Query: 135 TAGVCFEYDPDNSMRHTLF----PKPDEWPKSEYSELDETQHEA-PYNWEAKPNKYFFNV 189
            A + FEYDP N ++HT +        EWP+S+  E ++  +E  P++++A+ + ++ NV
Sbjct: 40  AAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNV 99

Query: 190 ESAGALKPENIVIMGVTVLKQKLSNLQTQLAH 221
           ES G++  + +V+ G+  L++K++++   L  
Sbjct: 100 ESVGSIPVDQVVVRGIDTLQKKVASILLALTQ 131


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0555    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,068,180
Number of extensions: 49404
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 3
Length of query: 287
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,254,276
Effective search space: 254618028
Effective search space used: 254618028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)