RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5333
(417 letters)
>gnl|CDD|238008 cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily
of calcium sensors and calcium signal modulators; most
examples in this alignment model have 2 active canonical
EF hands. Ca2+ binding induces a conformational change
in the EF-hand motif, leading to the activation or
inactivation of target proteins. EF-hands tend to occur
in pairs or higher copy numbers.
Length = 63
Score = 40.2 bits (95), Expect = 8e-05
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 295 IKQVLEEKDTDKDGFLSFQEFMGDRGQKHNRQYIVEEKDKFDNEYDTNKDGLLNENEILS 354
+++ D D DG +S E + EE D+ E D + DG ++ E L
Sbjct: 2 LREAFRLFDKDGDGTISADELK-AALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60
Query: 355 WI 356
+
Sbjct: 61 LM 62
Score = 36.0 bits (84), Expect = 0.002
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 166 RLRLLLKNMDLNKDNNIDRKELQAWILRSFRMLSVEESNSRFEDADENTDGVVDWDE 222
LR + D + D I EL+A + LS EE + + D++ DG +D++E
Sbjct: 1 ELREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEE 57
Score = 35.2 bits (82), Expect = 0.004
Identities = 14/56 (25%), Positives = 30/56 (53%)
Query: 337 NEYDTNKDGLLNENEILSWIVPSNEDIAEEEVNHLFAASDDDHDDLLSFDEIVEHH 392
+D + DG ++ +E+ + + E ++EEE++ + D D D + F+E +E
Sbjct: 7 RLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62
Score = 33.3 bits (77), Expect = 0.017
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 259 KMIFNAADGDKNGVLDKTEYQSF------SAPEEHPHMFPILIKQVLEEKDTDKDGFLSF 312
+ F D D +G + E ++ EE I +++ E D D DG + F
Sbjct: 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEE-------EIDEMIREVDKDGDGKIDF 55
Query: 313 QEFM 316
+EF+
Sbjct: 56 EEFL 59
Score = 26.0 bits (58), Expect = 9.1
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 155 LKMQMKILTKKRLRLLLKNMDLNKDNNIDRKELQAWI 191
LK + L+++ + +++ +D + D ID +E +
Sbjct: 26 LKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62
>gnl|CDD|227455 COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal
transduction mechanisms / Cytoskeleton / Cell division
and chromosome partitioning / General function
prediction only].
Length = 160
Score = 40.0 bits (94), Expect = 5e-04
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 18/153 (11%)
Query: 248 LLLFTQMVKQD----KMIFNAADGDKNGVLDKTEYQS------FSAPEEHPHMFPILIKQ 297
LL FTQ+ ++ K F D D +G++D+ E F+ E I +
Sbjct: 8 LLTFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEA-------EINK 60
Query: 298 VLEEKDTDKDGFLSFQEFMGDRGQKHNRQYIVEEKDKFDNEYDTNKDGLLNENEILSWIV 357
+ EE D + F EF+ K R EE + +D + DG ++ E+ +
Sbjct: 61 LFEEIDAGN-ETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLK 119
Query: 358 PSNEDIAEEEVNHLFAASDDDHDDLLSFDEIVE 390
E +++EEV L D+D D + ++E +
Sbjct: 120 SLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKK 152
Score = 28.8 bits (65), Expect = 3.4
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 163 TKKRLRLLLKNMDLNKDNNIDRKELQAWILRSFRMLSVEESNSRFEDADENTDGVVDWDE 222
++ LR K D + D I EL+ + LS EE ++ DE+ DG +D++E
Sbjct: 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEE 149
>gnl|CDD|222177 pfam13499, EF_hand_5, EF-hand domain pair.
Length = 60
Score = 35.4 bits (82), Expect = 0.003
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 338 EYDTNKDGLLNENEILSWIVPSNEDIAEEEVNHLFAAS----DDDHDDLLSFDEIVE 390
D + DG ++ E+ + + +EEV L A D D D +SF+E +E
Sbjct: 2 LLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLE 58
Score = 33.9 bits (78), Expect = 0.010
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 264 AADGDKNGVLDKTEYQSFSAP---EEHPHMFPILIKQVLEEKDTDKDGFLSFQEFM 316
D D +G +D E + + LI+ E D D DG +SF+EF+
Sbjct: 2 LLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFL 57
Score = 33.5 bits (77), Expect = 0.014
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 303 DTDKDGFLS---FQEFMGDRGQKHNRQYIVEEKDKFDNEYDTNKDGLLNENEILSWI 356
D D DG++ ++ + G K + + E + NE D + DG ++ E L +
Sbjct: 4 DKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEEFLEAM 60
Score = 33.5 bits (77), Expect = 0.016
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 172 KNMDLNKDNNIDRKELQAWILRSFRMLSVEES----NSRFEDADENTDGVVDWDE 222
K +D + D ID +EL+ + L+ EE + F + D++ DG + ++E
Sbjct: 1 KLLDKDGDGYIDVEELRKLLKALGLKLTDEEVEELIEADFNEIDKDGDGRISFEE 55
>gnl|CDD|204523 pfam10591, SPARC_Ca_bdg, Secreted protein acidic and rich in
cysteine Ca binding region. The SPARC_Ca_bdg domain of
Secreted Protein Acidic and Rich in Cysteine is
responsible for the anti-spreading activity of human
urothelial cells. It is rich in alpha-helices. This
extracellular calcium-binding domain contains two
EF-hands that each coordinates one Ca2+ ion, forming a
helix-loop-helix structure that not only drives the
conformation of the protein but is also necessary for
biological activity. The anti-spreading activity was
dependent on the coordination of Ca2+ by a Glu residue
at the Z position of EF-hand 2.
Length = 112
Score = 35.4 bits (82), Expect = 0.009
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 262 FNAADGDKNGVLDKTEYQSFSAPE---EHPHMFPILIKQVLEEKDTDKDGFLSFQEFM 316
FN D + +G L ++E AP EH IK + D DKDG +S +E+
Sbjct: 59 FNQLDTNHDGYLSRSELAPLRAPLVPMEH------CIKPFFKSCDADKDGLISLREWC 110
>gnl|CDD|240150 cd05023, S-100A11, S-100A11: S-100A11 domain found in proteins
similar to S100A11. S100A11 is a member of the S-100
domain family within EF-hand Ca2+-binding proteins
superfamily. Note that the S-100 hierarchy, to which
this S-100A11 group belongs, contains only S-100 EF-hand
domains, other EF-hands have been modeled separately.
S100 proteins exhibit unique patterns of tissue- and
cell type-specific expression and have been implicated
in the Ca2+-dependent regulation of diverse
physiological processes, including cell cycle
regulation, differentiation, growth, and metabolic
control . S100 proteins have also been associated with a
variety of pathological events, including neoplastic
transformation and neurodegenerative diseases such as
Alzheimer's, usually via over expression of the protein.
S100A11 is expressed in smooth muscle and other tissues
and involves in calcium-dependent membrane aggregation,
which is important for cell vesiculation . As is the
case for many other S100 proteins, S100A11 is homodimer,
which is able to form a heterodimer with S100B through
subunit exchange. Ca2+ binding to S100A11 results in a
conformational change in the protein, exposing a
hydrophobic surface that interacts with target proteins.
In addition to binding to annexin A1 and A6 S100A11
also interacts with actin and transglutaminase.
Length = 89
Score = 33.6 bits (77), Expect = 0.028
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 264 AADGDKNGVLDKTEYQSFSAPE----EHPHMFPILIKQVLEEKDTDKDGFLSFQEFM 316
A + L KTE+ SF E P ++ +++++ D + DG L FQEF+
Sbjct: 19 AGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFL 75
>gnl|CDD|238131 cd00213, S-100, S-100: S-100 domain, which represents the largest
family within the superfamily of proteins carrying the
Ca-binding EF-hand motif. Note that this S-100 hierarchy
contains only S-100 EF-hand domains, other EF-hands have
been modeled separately. S100 proteins are expressed
exclusively in vertebrates, and are implicated in
intracellular and extracellular regulatory activities.
Intracellularly, S100 proteins act as Ca-signaling or
Ca-buffering proteins. The most unusual characteristic
of certain S100 proteins is their occurrence in
extracellular space, where they act in a cytokine-like
manner through RAGE, the receptor for advanced glycation
products. Structural data suggest that many S100 members
exist within cells as homo- or heterodimers and even
oligomers; oligomerization contributes to their
functional diversification. Upon binding calcium, most
S100 proteins change conformation to a more open
structure exposing a hydrophobic cleft. This hydrophobic
surface represents the interaction site of S100 proteins
with their target proteins. There is experimental
evidence showing that many S100 proteins have multiple
binding partners with diverse mode of interaction with
different targets. In addition to S100 proteins (such as
S100A1,-3,-4,-6,-7,-10,-11,and -13), this group includes
the ''fused'' gene family, a group of calcium binding
S100-related proteins. The ''fused'' gene family
includes multifunctional epidermal differentiation
proteins - profilaggrin, trichohyalin, repetin,
hornerin, and cornulin; functionally these proteins are
associated with keratin intermediate filaments and
partially crosslinked to the cell envelope. These
''fused'' gene proteins contain N-terminal sequence with
two Ca-binding EF-hands motif, which may be associated
with calcium signaling in epidermal cells and
autoprocessing in a calcium-dependent manner. In
contrast to S100 proteins, "fused" gene family proteins
contain an extraordinary high number of almost perfect
peptide repeats with regular array of polar and charged
residues similar to many known cell envelope proteins.
Length = 88
Score = 32.5 bits (75), Expect = 0.067
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 266 DGDKNGVLDKTEYQS-----FSAPEEHPHMFPILIKQVLEEKDTDKDGFLSFQEFM 316
+GDK+ L K E + ++ P + +++++ D +KDG + FQEF+
Sbjct: 21 EGDKD-TLSKKELKELLETELPNFLKNQKD-PEAVDKIMKDLDVNKDGKVDFQEFL 74
>gnl|CDD|185503 PTZ00183, PTZ00183, centrin; Provisional.
Length = 158
Score = 33.9 bits (78), Expect = 0.069
Identities = 24/93 (25%), Positives = 44/93 (47%)
Query: 295 IKQVLEEKDTDKDGFLSFQEFMGDRGQKHNRQYIVEEKDKFDNEYDTNKDGLLNENEILS 354
IKQ++ + D D G + F+EF+ +K + EE K +D +K G ++ +
Sbjct: 55 IKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKR 114
Query: 355 WIVPSNEDIAEEEVNHLFAASDDDHDDLLSFDE 387
E I +EE+ + +D + D +S +E
Sbjct: 115 VAKELGETITDEELQEMIDEADRNGDGEISEEE 147
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 34.8 bits (80), Expect = 0.088
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 163 TKKRL-RLLLKNMDLNKDNNIDRKELQAWILRSFRMLSVEESNSRFEDADENTDGVVDWD 221
T++ R +L +D ++D + E I +++ + F+ AD N DGVV D
Sbjct: 176 TERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTID 235
Query: 222 E 222
E
Sbjct: 236 E 236
Score = 32.9 bits (75), Expect = 0.30
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 244 DMNLLLLFTQMVKQDKMIFNAADGDKNGVLDKTEYQSFSA--PEEHPHMFPILIKQVLEE 301
+++L TQ + F+ D + + + + S S P E F +++L
Sbjct: 131 ELDLFDFVTQEPESACESFDLLDPSSSNKVVGSIFVSCSIEDPVETERSF---ARRILAI 187
Query: 302 KDTDKDGFLSFQEFMGDRGQKHNRQYIVEEKDKFDNEYDTNKDGLLNENEILSWIVPSNE 361
D D+DG LSF EF D + +K++ D N DG++ +E+ + + E
Sbjct: 188 VDYDEDGQLSFSEF-SDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQQE 246
Score = 29.1 bits (65), Expect = 5.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 340 DTNKDGLLNENEILSWIVPSNEDIAEEEVNHLFAASDDDHDDLLSFDEI 388
D ++DG L+ +E I +A + LF A+D + D +++ DE+
Sbjct: 189 DYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDEL 237
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated in
endocytosis, vesicle transport, and signal transduction.
The alignment contains a pair of EF-hand motifs,
typically one of them is canonical and binds to Ca2+,
while the other may not bind to Ca2+. A hydrophobic
binding pocket is formed by residues from both EF-hand
motifs. The EH domain binds to proteins containing NPF
(class I), [WF]W or SWG (class II), or H[TS]F (class
III) sequence motifs.
Length = 67
Score = 30.7 bits (70), Expect = 0.21
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Query: 261 IFNAADGDKNGVLDKTEYQSF----SAPEEHPHMFPILIKQVLEEKDTDKDGFLSFQEF 315
IF + D D +G++ E + F P ++ Q+ + DTDKDG L +EF
Sbjct: 4 IFRSLDPDGDGLISGDEARPFLGKSGLPRS-------VLAQIWDLADTDKDGKLDKEEF 55
Score = 29.9 bits (68), Expect = 0.39
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 333 DKFDNEYDTNKDGLLNENEILSWIVPSNEDIAEEEVNHLFAASDDDHDDLLSFDE-IVEH 391
D+ D + DGL++ +E ++ S + + ++ +D D D L +E +
Sbjct: 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAM 59
Query: 392 HDVFV 396
H + +
Sbjct: 60 HLIAL 64
>gnl|CDD|185504 PTZ00184, PTZ00184, calmodulin; Provisional.
Length = 149
Score = 32.0 bits (73), Expect = 0.25
Identities = 22/95 (23%), Positives = 47/95 (49%)
Query: 295 IKQVLEEKDTDKDGFLSFQEFMGDRGQKHNRQYIVEEKDKFDNEYDTNKDGLLNENEILS 354
++ ++ E D D +G + F EF+ +K EE + +D + +G ++ E+
Sbjct: 49 LQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRH 108
Query: 355 WIVPSNEDIAEEEVNHLFAASDDDHDDLLSFDEIV 389
+ E + +EEV+ + +D D D ++++E V
Sbjct: 109 VMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143
>gnl|CDD|222407 pfam13833, EF_hand_6, EF-hand domain pair.
Length = 53
Score = 29.8 bits (68), Expect = 0.28
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 362 DIAEEEVNHLFAASDDDHDDLLSFDEIVE 390
++EEEV+ LF D D D +SF+E
Sbjct: 20 SLSEEEVDILFREFDTDGDGKISFEEFCV 48
>gnl|CDD|200946 pfam00036, efhand, EF hand. The EF-hands can be divided into two
classes: signaling proteins and buffering/transport
proteins. The first group is the largest and includes
the most well-known members of the family such as
calmodulin, troponin C and S100B. These proteins
typically undergo a calcium-dependent conformational
change which opens a target binding site. The latter
group is represented by calbindin D9k and do not undergo
calcium dependent conformational changes.
Length = 29
Score = 29.0 bits (66), Expect = 0.30
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 295 IKQVLEEKDTDKDGFLSFQEFM 316
+K+ +E D D DG +SF+EF
Sbjct: 2 LKEAFKEFDKDGDGKISFEEFK 23
>gnl|CDD|197492 smart00054, EFh, EF-hand, calcium binding motif. EF-hands are
calcium-binding motifs that occur at least in pairs.
Links between disease states and genes encoding
EF-hands, particularly the S100 subclass, are emerging.
Each motif consists of a 12 residue loop flanked on
either side by a 12 residue alpha-helix. EF-hands
undergo a conformational change unpon binding calcium
ions.
Length = 29
Score = 28.9 bits (66), Expect = 0.31
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 295 IKQVLEEKDTDKDGFLSFQEFM 316
+K+ D D DG + F+EF
Sbjct: 2 LKEAFRLFDKDGDGKIDFEEFK 23
>gnl|CDD|218763 pfam05817, Ribophorin_II, Oligosaccharyltransferase subunit
Ribophorin II. This family contains eukaryotic
Ribophorin II (RPN2) proteins. The mammalian
oligosaccharyltransferase (OST) is a protein complex
that effects the cotranslational N-glycosylation of
newly synthesised polypeptides, and is composed of the
following proteins: ribophorins I and II (RI and RII),
OST48, and Dadl, N33/IAP, OST4, STT3. The family also
includes the SWP1 protein from yeast. In yeast the
oligosaccharyltransferase complex is composed 7 or 8
subunits, SWP1, being one of them.
Length = 636
Score = 31.6 bits (72), Expect = 0.96
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 357 VPSNEDIAE--EEVNHLFAASDDDHDDLLSFDEIVEHHDVFVGSEATDFGDHLTNPHLIK 414
+ D+A+ +E+ L A +D+ D L F+ + + V A DH++ IK
Sbjct: 176 LSQQADLADIVDEIEDLVAQADELDGDYLQFEGGLSTTALVVRG-AYKLADHVSTEPPIK 234
Query: 415 EE 416
EE
Sbjct: 235 EE 236
>gnl|CDD|240156 cd05030, calgranulins, Calgranulins: S-100 domain found in proteins
belonging to the Calgranulin subgroup of the S100 family
of EF-hand calcium-modulated proteins, including S100A8,
S100A9, and S100A12 . Note that the S-100 hierarchy, to
which this Calgranulin group belongs, contains only
S-100 EF-hand domains, other EF-hands have been modeled
separately. These proteins are expressed mainly in
granulocytes, and are involved in inflammation, allergy,
and neuritogenesis, as well as in host-parasite
response. Calgranulins are modulated not only by
calcium, but also by other metals such as zinc and
copper. Structural data suggested that calgranulins may
exist in multiple structural forms, homodimers, as well
as hetero-oligomers. For example, the S100A8/S100A9
complex called calprotectin plays important roles in the
regulation of inflammatory processes, wound repair, and
regulating zinc-dependent enzymes as well as microbial
growth.
Length = 88
Score = 28.9 bits (65), Expect = 1.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 293 ILIKQVLEEKDTDKDGFLSFQEFM 316
I ++ E+ DT++DG LSF+EF+
Sbjct: 51 KAIDKIFEDLDTNQDGQLSFEEFL 74
>gnl|CDD|197477 smart00027, EH, Eps15 homology domain. Pair of EF hand motifs that
recognise proteins containing Asn-Pro-Phe (NPF)
sequences.
Length = 96
Score = 28.8 bits (65), Expect = 1.4
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 11/59 (18%)
Query: 261 IFNAADGDKNGVLD----KTEYQSFSAPEEHPHMFPILIKQVLEEKDTDKDGFLSFQEF 315
IF + D +++G + K P+ L+ ++ D D DG L EF
Sbjct: 15 IFRSLDKNQDGTVTGAQAKPILLKSGLPQT-------LLAKIWNLADIDNDGELDKDEF 66
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 31.2 bits (70), Expect = 1.4
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 321 QKHNRQYIVEEKDKFDNEYDTNKDGLLNENEILSWIVPSNEDIAEEEVNHLFAASDDDHD 380
Q ++ + K K N+ + D ++ENEI S +V S D+ ++ + ++DD
Sbjct: 660 QYFTKKTA-DGKGKKSNKASFDSDDEMDENEIWSALVKSRPDVEDDSDDSELDFAEDDFS 718
Query: 381 DLLSFDE 387
D S DE
Sbjct: 719 DSTSDDE 725
>gnl|CDD|205383 pfam13202, EF_hand_3, EF hand.
Length = 25
Score = 26.9 bits (61), Expect = 1.7
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 167 LRLLLKNMDLNKDNNIDRKELQA 189
L+ L + D N D I ++EL+
Sbjct: 1 LKDLFRQFDTNGDGKISKEELKR 23
Score = 26.5 bits (60), Expect = 2.0
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 295 IKQVLEEKDTDKDGFLSFQEFM 316
+K + + DT+ DG +S +E
Sbjct: 1 LKDLFRQFDTNGDGKISKEELK 22
Score = 25.3 bits (57), Expect = 5.3
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 261 IFNAADGDKNGVLDKTEYQSFS 282
+F D + +G + K E +
Sbjct: 4 LFRQFDTNGDGKISKEELKRLL 25
>gnl|CDD|227697 COG5410, COG5410, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 305
Score = 29.2 bits (65), Expect = 4.6
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 25 LNKER-EEDGSFVSRDHNHYGQGGEHNTDFDHEAILDRYNNI 65
L K E D F +R Q + ++ H I +++
Sbjct: 13 LIKALCEADHLFFTRYFFTQRQQLRYRVNWHHHVIAGVLDDV 54
>gnl|CDD|163554 TIGR03842, F420_CPS_4043, F420-dependent oxidoreductase, CPS_4043
family. This model represents a family of putative
F420-dependent oxidoreductases, fairly closely related
to 5,10-methylenetetrahydromethanopterin reductase (mer,
TIGR03555), both within the bacterial luciferase-like
monoxygenase (LLM) family. A fairly deep split (to about
40 % sequence identity) in the present family separates
a strictly Actinobacterial clade from an
alpha/beta/gamma-proteobacterial clade, in which the
member is often the only apparent F420-dependent LLM
family member. The specific function, and whether
Actinobacterial and Proteobacterial clades differ in
function, are unknown [Unknown function, Enzymes of
unknown specificity].
Length = 330
Score = 28.5 bits (64), Expect = 6.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 39 DHNHYGQGGEHNTDFDHEAILDRY 62
D++ +G+ G +TDF + I+DR+
Sbjct: 259 DYSEHGRAGNPHTDFVPDEIVDRF 282
>gnl|CDD|238155 cd00252, SPARC_EC, SPARC_EC; extracellular Ca2+ binding domain
(containing 2 EF-hand motifs) of SPARC and related
proteins (QR1, SC1/hevin, testican and tsc-36/FRP).
SPARC (BM-40) is a multifunctional glycoprotein, a
matricellular protein, that functions to regulate
cell-matrix interactions; binds to such proteins as
collagen and vitronectin and binds to endothelial cells
thus inhibiting cellular proliferation. The EC domain
interacts with a follistatin-like (FS) domain which
appears to stabilize Ca2+ binding. The two EF-hands
interact canonically but their conserved disulfide bonds
confer a tight association between the EF-hand pair and
an acid/amphiphilic N-terminal helix. Proposed active
form involves a Ca2+ dependent symmetric
homodimerization of EC-FS modules.
Length = 116
Score = 27.3 bits (61), Expect = 6.3
Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 19/60 (31%)
Query: 262 FNAADGDKNGVLDKTEYQSFSAPEEHPHMFPI-------LIKQVLEEKDTDKDGFLSFQE 314
FN DG+ +G L E + PI IK E D DKDG +S E
Sbjct: 54 FNQLDGNYDGKLSHHE------------LAPIRLDPNEHCIKPFFESCDLDKDGSISLDE 101
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.135 0.397
Gapped
Lambda K H
0.267 0.0908 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,855,601
Number of extensions: 2170075
Number of successful extensions: 1412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1386
Number of HSP's successfully gapped: 55
Length of query: 417
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 318
Effective length of database: 6,546,556
Effective search space: 2081804808
Effective search space used: 2081804808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.6 bits)