BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5338
(76 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 39/53 (73%), Gaps = 2/53 (3%)
Query: 25 KILEWTEGKKGNIRALLCSLHTILWEG-AKWK-CEMSQLVTPADVKKSYRKAC 75
KILEW EGK+ NIRALL ++HT+LW G KWK M+ LVTP VKK YRKA
Sbjct: 90 KILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAV 142
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
M+ LVTP VKK YRKA L VHPDK
Sbjct: 125 MADLVTPEQVKKVYRKAVLVVHPDK 149
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 39/53 (73%), Gaps = 2/53 (3%)
Query: 25 KILEWTEGKKGNIRALLCSLHTILWEG-AKWK-CEMSQLVTPADVKKSYRKAC 75
KILEW EGK+ NIRALL ++HT+LW G KWK M+ LVTP VKK YRKA
Sbjct: 22 KILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAV 74
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
M+ LVTP VKK YRKA L VHPDK
Sbjct: 57 MADLVTPEQVKKVYRKAVLVVHPDK 81
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 39/53 (73%), Gaps = 2/53 (3%)
Query: 25 KILEWTEGKKGNIRALLCSLHTILWEG-AKWK-CEMSQLVTPADVKKSYRKAC 75
KILEW EGK+ NIRALL ++HT+LW G KWK M+ LVTP VKK YRKA
Sbjct: 6 KILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAV 58
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 1 MSQLVTPADVKKSYRKACLAVHP 23
M+ LVTP VKK YRKA L VHP
Sbjct: 41 MADLVTPEQVKKVYRKAVLVVHP 63
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex
Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 39/53 (73%), Gaps = 2/53 (3%)
Query: 25 KILEWTEGKKGNIRALLCSLHTILWEG-AKWK-CEMSQLVTPADVKKSYRKAC 75
KILEW EGK+ NIRALL ++HT+LW G KWK M+ LVTP VKK YRKA
Sbjct: 7 KILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAV 59
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 1 MSQLVTPADVKKSYRKACLAVHP 23
M+ LVTP VKK YRKA L VHP
Sbjct: 42 MADLVTPEQVKKVYRKAVLVVHP 64
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 25 KILEWTEGKKGNIRALLCSLHTILWEG-AKWK-CEMSQLVTPADVKKSYRKAC 75
KILEW EGK+ NIRALL + HT+LW G KWK + LVTP VKK YRKA
Sbjct: 9 KILEWIEGKERNIRALLSTXHTVLWAGETKWKPVGXADLVTPEQVKKVYRKAV 61
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 2 SQLVTPADVKKSYRKACLAVHPDK 25
+ LVTP VKK YRKA L VHPDK
Sbjct: 45 ADLVTPEQVKKVYRKAVLVVHPDK 68
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1
J-Domain
Length = 106
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 25 KILEWTEGKKGNIRALLCSLHTILWEGAKWK-CEMSQLVTPADVKKSYRKAC 75
KI +W+ GK GNIR+LL +L ILW G+ WK + ++ V+KSY++A
Sbjct: 14 KIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRAL 65
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 10 VKKSYRKACLAVHPDKI 26
V+KSY++A L +HPDK+
Sbjct: 57 VRKSYQRALLILHPDKL 73
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
+ + T D+KKSYRK L HPDK
Sbjct: 25 LDKNATSDDIKKSYRKLALKYHPDK 49
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 5 VTPADVKKSYRKACLAVHPDK 25
+P D+KK+YRK L HPDK
Sbjct: 21 ASPEDIKKAYRKLALRWHPDK 41
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 5 VTPA----DVKKSYRKACLAVHPDKILEWTE 31
V+P+ ++KK YRKA L HPDK TE
Sbjct: 16 VSPSANEQELKKGYRKAALKYHPDKPTGDTE 46
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
+S+ + D+KK+YR+ L HPDK
Sbjct: 15 VSRGASDEDLKKAYRRLALKFHPDK 39
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 5 VTPADVKKSYRKACLAVHPDK 25
T ++KK+YRK L HPDK
Sbjct: 18 ATQEELKKAYRKLALKYHPDK 38
>pdb|2IG2|H Chain H, Dir Primaerstruktur Des Kristallisierbaren Monoklonalen
Immunoglobulins Igg1 Kol. Ii. Aminosaeuresequenz Der L-
Kette, Lambda-Typ, Subgruppe I (German)
Length = 455
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH +G ++KC++S PA ++K+ KA
Sbjct: 311 VVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKA 348
>pdb|1MCO|H Chain H, Three-Dimensional Structure Of A Human Immunoglobulin With
A Hinge Deletion
Length = 428
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH +G ++KC++S PA ++K+ KA
Sbjct: 287 VVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKA 324
>pdb|1H3T|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(Mn2f)2
pdb|1H3T|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(Mn2f)2
pdb|1H3U|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(M3n2f)2
pdb|1H3U|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(M3n2f)2
pdb|1H3V|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2,Sg P212121
pdb|1H3V|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2,Sg P212121
pdb|1H3W|M Chain M, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G2f)2, Sg C2221
pdb|1H3Y|A Chain A, Crystal Structure Of A Human Igg1 Fc-Fragment,High Salt
Condition
pdb|1H3Y|B Chain B, Crystal Structure Of A Human Igg1 Fc-Fragment,High Salt
Condition
pdb|1H3X|A Chain A, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G0f)2
pdb|1H3X|B Chain B, Crystal Structure Of The Human Igg1 Fc-Fragment,Glycoform
(G0f)2
Length = 223
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH +G ++KC++S PA ++K+ KA
Sbjct: 78 VVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKA 115
>pdb|1FRT|C Chain C, Crystal Structure Of The Complex Of Rat Neonatal Fc
Receptor With Fc
Length = 205
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH +G ++KC++S PA ++K+ KA
Sbjct: 64 VVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKA 101
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 9 DVKKSYRKACLAVHPDKILEWTE 31
++KK+YRK L HPDK + E
Sbjct: 24 ELKKAYRKMALKFHPDKNPDGAE 46
>pdb|1FCC|A Chain A, Crystal Structure Of The C2 Fragment Of Streptococcal
Protein G In Complex With The Fc Domain Of Human Igg
pdb|1FCC|B Chain B, Crystal Structure Of The C2 Fragment Of Streptococcal
Protein G In Complex With The Fc Domain Of Human Igg
Length = 206
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH +G ++KC++S PA ++K+ KA
Sbjct: 65 VVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKA 102
>pdb|1FC1|A Chain A, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-And 2.8-Angstroms
Resolution
pdb|1FC1|B Chain B, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-And 2.8-Angstroms
Resolution
pdb|1FC2|D Chain D, Crystallographic Refinement And Atomic Models Of A Human
Fc Fragment And Its Complex With Fragment B Of Protein A
From Staphylococcus Aureus At 2.9-and 2.8-angstroms
Resolution
Length = 224
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH +G ++KC++S PA ++K+ KA
Sbjct: 80 VVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKA 117
>pdb|1E4K|A Chain A, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
pdb|1E4K|B Chain B, Crystal Structure Of Soluble Human Igg1 Fc
Fragment-Fc-Gamma Receptor Iii Complex
Length = 225
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH +G ++KC++S PA ++K+ KA
Sbjct: 80 VVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKA 117
>pdb|3RY6|A Chain A, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
pdb|3RY6|B Chain B, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 214
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH +G ++KC++S PA ++K+ KA
Sbjct: 72 VVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKA 109
>pdb|2RCJ|C Chain C, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|D Chain D, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|G Chain G, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|H Chain H, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|K Chain K, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|L Chain L, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|O Chain O, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|P Chain P, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|S Chain S, Solution Structure Of Human Immunoglobulin M
pdb|2RCJ|T Chain T, Solution Structure Of Human Immunoglobulin M
Length = 523
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH +G ++KC++S PA ++K+ KA
Sbjct: 382 VVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKA 419
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDKILE 28
+++ + ++K++YR+ L HPDK E
Sbjct: 11 LARGASDEEIKRAYRRQALRYHPDKNKE 38
>pdb|3C2S|A Chain A, Structural Characterization Of A Human Fc Fragment
Engineered For Lack Of Effector Functions
Length = 225
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 80 VVSVLTVLHQDWLNGKEYKCKVSNKALPASIEKTISKA 117
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
+S+ + AD+KK+Y+K HPDK
Sbjct: 25 VSRTASQADIKKAYKKLAREWHPDK 49
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 9 DVKKSYRKACLAVHPDK 25
D+KK+YR+ L HPDK
Sbjct: 18 DIKKAYRRKALQWHPDK 34
>pdb|3DJ9|A Chain A, Crytal Structure Of An Isolated, Unglycosylated Antibody
Ch2 Domain
Length = 107
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 67 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 104
>pdb|3DO3|A Chain A, Human 1gg1 Fc Fragment, 2.5 Angstrom Structure
pdb|3DO3|B Chain B, Human 1gg1 Fc Fragment, 2.5 Angstrom Structure
Length = 212
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 67 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 104
>pdb|4B7I|A Chain A, Crystal Structure Of Human Igg Fc Bearing Hybrid-Type
Glycans
pdb|4B7I|B Chain B, Crystal Structure Of Human Igg Fc Bearing Hybrid-Type
Glycans
Length = 218
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 66 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 103
>pdb|2DTS|A Chain A, Crystal Structure Of The Defucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|2DTS|B Chain B, Crystal Structure Of The Defucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|3AVE|A Chain A, Crystal Structure Of The Fucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|3AVE|B Chain B, Crystal Structure Of The Fucosylated Fc Fragment From
Human Immunoglobulin G1
pdb|3AY4|A Chain A, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
pdb|3AY4|B Chain B, Crystal Structure Of Nonfucosylated Fc Complexed With
Bis-Glycosylated Soluble Form Of Fc Gamma Receptor Iiia
Length = 223
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 78 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 115
>pdb|1OQO|A Chain A, Complex Between G0 Version Of An Fc Bound To A Minimized
Version Of Protein A Called Mini-Z
pdb|1OQO|B Chain B, Complex Between G0 Version Of An Fc Bound To A Minimized
Version Of Protein A Called Mini-Z
pdb|1OQX|A Chain A, G-2 Glycovariant Of Human Igg Fc Bound To Minimized
Version Of Protein A Called Z34c
pdb|1OQX|B Chain B, G-2 Glycovariant Of Human Igg Fc Bound To Minimized
Version Of Protein A Called Z34c
pdb|3V95|A Chain A, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc And
Igg1 T125(Yb20) IN THE PRESENCE OF EDTA
pdb|3V95|B Chain B, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc And
Igg1 T125(Yb20) IN THE PRESENCE OF EDTA
Length = 212
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 67 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 104
>pdb|3SGJ|A Chain A, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGJ|B Chain B, Unique Carbohydrate-Carbohydrate Interactions Are Required
For High Affinity Binding Between Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|A Chain A, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
pdb|3SGK|B Chain B, Unique CarbohydrateCARBOHYDRATE INTERACTIONS ARE REQUIRED
FOR HIGH Affinity Binding Of Fcgiii And Antibodies
Lacking Core Fucose
Length = 225
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 80 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 117
>pdb|3S7G|A Chain A, Aglycosylated Human Igg1 Fc Fragment
pdb|3S7G|B Chain B, Aglycosylated Human Igg1 Fc Fragment
pdb|3S7G|C Chain C, Aglycosylated Human Igg1 Fc Fragment
pdb|3S7G|D Chain D, Aglycosylated Human Igg1 Fc Fragment
Length = 227
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 82 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 119
>pdb|4ACP|A Chain A, Deactivation Of Human Igg1 Fc By Endoglycosidase Treatment
pdb|4ACP|B Chain B, Deactivation Of Human Igg1 Fc By Endoglycosidase Treatment
Length = 240
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 87 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 124
>pdb|3AGV|A Chain A, Crystal Structure Of A Human Igg-Aptamer Complex
pdb|3AGV|B Chain B, Crystal Structure Of A Human Igg-Aptamer Complex
Length = 211
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 66 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 103
>pdb|3D6G|A Chain A, Fc Fragment Of Igg1 (herceptin) With Protein-a Mimetic
Peptide Dendrimer Ligand.
pdb|3D6G|B Chain B, Fc Fragment Of Igg1 (herceptin) With Protein-a Mimetic
Peptide Dendrimer Ligand
Length = 210
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 67 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 104
>pdb|1L6X|A Chain A, Fc Fragment Of Rituximab Bound To A Minimized Version Of
The B-Domain From Protein A Called Z34c
pdb|2IWG|A Chain A, Complex Between The Pryspry Domain Of Trim21 And Igg Fc
pdb|2IWG|D Chain D, Complex Between The Pryspry Domain Of Trim21 And Igg Fc
Length = 207
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 66 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 103
>pdb|3DNK|A Chain A, Enzyme Deglycosylated Human Igg1 Fc Fragment
pdb|3DNK|B Chain B, Enzyme Deglycosylated Human Igg1 Fc Fragment
Length = 212
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 67 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 104
>pdb|2WAH|A Chain A, Crystal Structure Of An Igg1 Fc Glycoform (man9glcnac2)
pdb|2WAH|B Chain B, Crystal Structure Of An Igg1 Fc Glycoform (man9glcnac2)
Length = 209
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 66 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 103
>pdb|1T83|A Chain A, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T83|B Chain B, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Orthorhombic)
pdb|1T89|A Chain A, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
pdb|1T89|B Chain B, Crystal Structure Of A Human Type Iii Fc Gamma Receptor In
Complex With An Fc Fragment Of Igg1 (Hexagonal)
Length = 224
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 79 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 116
>pdb|4DZ8|A Chain A, Human Igg1 Fc Fragment Heterodimer
Length = 211
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 67 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 104
>pdb|3V7M|A Chain A, Crystal Structure Of Monoclonal Human Anti-Rhesus D Fc
Igg1 T125(Yb20) IN THE PRESENCE OF ZN2+
Length = 209
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 67 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 104
>pdb|2J6E|A Chain A, Crystal Structure Of An Autoimmune Complex Between A Human
Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel Fc
Epitope And Evidence For Affinity Maturation
pdb|2J6E|B Chain B, Crystal Structure Of An Autoimmune Complex Between A Human
Igm Rheumatoid Factor And Igg1 Fc Reveals A Novel Fc
Epitope And Evidence For Affinity Maturation
Length = 232
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 87 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 124
>pdb|2GJ7|A Chain A, Crystal Structure Of A Ge-GiFC COMPLEX
pdb|2GJ7|B Chain B, Crystal Structure Of A Ge-GiFC COMPLEX
Length = 227
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 82 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 119
>pdb|1DN2|A Chain A, Fc Fragment Of Human Igg1 In Complex With An Engineered 13
Residue Peptide Dcawhlgelvwct-Nh2
pdb|1DN2|B Chain B, Fc Fragment Of Human Igg1 In Complex With An Engineered 13
Residue Peptide Dcawhlgelvwct-Nh2
Length = 207
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 66 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 103
>pdb|3FJT|A Chain A, Crystal Structure Of A Human Fc Fragment Engineered For
Extended Serum Half-life
pdb|3FJT|B Chain B, Crystal Structure Of A Human Fc Fragment Engineered For
Extended Serum Half-life
Length = 209
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 67 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 104
>pdb|1HZH|H Chain H, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
pdb|1HZH|K Chain K, Crystal Structure Of The Intact Human Igg B12 With Broad
And Potent Activity Against Primary Hiv-1 Isolates: A
Template For Hiv Vaccine Design
Length = 457
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 312 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 349
>pdb|4DZ8|B Chain B, Human Igg1 Fc Fragment Heterodimer
Length = 207
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH G ++KC++S PA ++K+ KA
Sbjct: 64 VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKA 101
>pdb|1ADQ|A Chain A, Crystal Structure Of A Human Igm Rheumatoid Factor Fab In
Complex With Its Autoantigen Igg Fc
Length = 206
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 37 IRALLCSLHTILWEGAKWKCEMSQLVTPADVKKSYRKA 74
+ ++L LH +G ++KC++S P+ ++K+ KA
Sbjct: 65 VVSVLTVLHQNWLDGKEYKCKVSNKGLPSSIEKTISKA 102
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 10 VKKSYRKACLAVHPDKILEWTE 31
+KK+YRK L HPDK E E
Sbjct: 26 IKKAYRKLALKWHPDKNPENKE 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.130 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,449,473
Number of Sequences: 62578
Number of extensions: 81071
Number of successful extensions: 168
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 59
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)