Query psy5338
Match_columns 76
No_of_seqs 119 out of 1097
Neff 5.4
Searched_HMMs 46136
Date Sat Aug 17 00:01:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0431|consensus 99.9 3.1E-25 6.7E-30 171.6 3.1 61 16-76 351-414 (453)
2 COG0484 DnaJ DnaJ-class molecu 99.1 9.3E-11 2E-15 89.8 5.5 47 1-49 12-58 (371)
3 KOG0713|consensus 99.0 3.4E-10 7.4E-15 85.8 5.4 43 1-44 24-66 (336)
4 PRK14288 chaperone protein Dna 98.8 5E-09 1.1E-13 79.2 5.6 47 1-49 11-57 (369)
5 KOG0712|consensus 98.8 1.1E-08 2.3E-13 77.8 5.0 44 1-49 12-55 (337)
6 PRK14296 chaperone protein Dna 98.7 1.6E-08 3.5E-13 76.6 5.4 42 1-44 12-53 (372)
7 PRK14279 chaperone protein Dna 98.7 3.1E-08 6.7E-13 75.5 5.7 47 1-49 17-63 (392)
8 PRK14282 chaperone protein Dna 98.7 3.6E-08 7.8E-13 74.4 5.7 47 1-48 12-58 (369)
9 PRK14286 chaperone protein Dna 98.7 4.1E-08 8.9E-13 74.4 5.6 46 1-48 12-57 (372)
10 PRK14283 chaperone protein Dna 98.7 4.2E-08 9.1E-13 74.3 5.7 42 1-44 13-54 (378)
11 smart00271 DnaJ DnaJ molecular 98.7 1E-07 2.2E-12 54.0 5.7 46 1-46 9-54 (60)
12 PRK14287 chaperone protein Dna 98.6 5.4E-08 1.2E-12 73.7 5.7 45 1-48 12-56 (371)
13 PTZ00037 DnaJ_C chaperone prot 98.6 5.7E-08 1.2E-12 75.1 5.3 43 1-49 36-78 (421)
14 KOG0716|consensus 98.6 6.5E-08 1.4E-12 72.0 5.4 48 1-50 39-86 (279)
15 PRK14299 chaperone protein Dna 98.6 7.4E-08 1.6E-12 70.7 5.6 46 1-49 12-57 (291)
16 PRK14295 chaperone protein Dna 98.6 7.5E-08 1.6E-12 73.4 5.7 47 1-49 17-63 (389)
17 PRK14285 chaperone protein Dna 98.6 7.9E-08 1.7E-12 72.7 5.7 48 1-50 11-58 (365)
18 cd06257 DnaJ DnaJ domain or J- 98.6 1.7E-07 3.6E-12 52.2 5.6 41 1-42 8-48 (55)
19 PRK14278 chaperone protein Dna 98.6 8.9E-08 1.9E-12 72.7 5.6 45 1-48 11-55 (378)
20 PRK14291 chaperone protein Dna 98.6 9.3E-08 2E-12 72.6 5.7 46 1-49 11-56 (382)
21 PRK14284 chaperone protein Dna 98.6 9.3E-08 2E-12 72.7 5.6 42 1-43 9-50 (391)
22 PRK14294 chaperone protein Dna 98.6 1E-07 2.2E-12 71.9 5.7 46 1-48 12-57 (366)
23 PRK14290 chaperone protein Dna 98.6 1.1E-07 2.3E-12 71.8 5.7 48 1-49 11-58 (365)
24 KOG0691|consensus 98.6 9.8E-08 2.1E-12 71.4 5.3 46 1-48 13-58 (296)
25 PRK14280 chaperone protein Dna 98.6 1.1E-07 2.4E-12 72.0 5.6 45 1-48 12-56 (376)
26 PRK14276 chaperone protein Dna 98.6 1.2E-07 2.6E-12 71.9 5.6 46 1-49 12-57 (380)
27 PRK14277 chaperone protein Dna 98.6 1.3E-07 2.7E-12 71.9 5.7 46 1-48 13-58 (386)
28 PRK14298 chaperone protein Dna 98.6 1.3E-07 2.7E-12 71.9 5.5 47 1-50 13-59 (377)
29 PRK14297 chaperone protein Dna 98.6 1.3E-07 2.9E-12 71.6 5.6 48 1-50 12-59 (380)
30 PRK10767 chaperone protein Dna 98.5 1.7E-07 3.6E-12 70.7 5.8 46 1-48 12-57 (371)
31 PF00226 DnaJ: DnaJ domain; I 98.5 3E-07 6.4E-12 53.0 5.6 29 1-29 8-36 (64)
32 PRK14301 chaperone protein Dna 98.5 1.6E-07 3.4E-12 71.2 5.6 47 1-49 12-58 (373)
33 PHA03102 Small T antigen; Revi 98.5 2.1E-07 4.5E-12 64.0 5.2 27 1-27 13-41 (153)
34 PRK14281 chaperone protein Dna 98.5 2.3E-07 4.9E-12 70.8 5.6 47 1-49 11-57 (397)
35 KOG0717|consensus 98.5 1.8E-07 3.8E-12 73.9 5.1 44 1-44 16-59 (508)
36 TIGR02349 DnaJ_bact chaperone 98.5 2.6E-07 5.5E-12 69.2 5.6 45 1-48 8-52 (354)
37 PRK14300 chaperone protein Dna 98.5 2.6E-07 5.6E-12 69.9 5.6 42 1-44 11-52 (372)
38 PRK10266 curved DNA-binding pr 98.5 2.9E-07 6.2E-12 68.0 5.6 41 1-43 12-52 (306)
39 PRK14289 chaperone protein Dna 98.4 4.7E-07 1E-11 68.7 5.7 40 1-41 13-52 (386)
40 KOG0715|consensus 98.4 4.5E-07 9.7E-12 67.2 5.1 43 1-45 51-93 (288)
41 PRK09430 djlA Dna-J like membr 98.4 5.9E-07 1.3E-11 65.8 5.3 47 1-47 208-260 (267)
42 PRK14292 chaperone protein Dna 98.4 6.8E-07 1.5E-11 67.4 5.6 48 1-51 10-57 (371)
43 PRK14293 chaperone protein Dna 98.4 7.7E-07 1.7E-11 67.4 5.7 45 1-48 11-55 (374)
44 COG2214 CbpA DnaJ-class molecu 98.3 1.7E-06 3.8E-11 57.0 5.8 29 1-29 14-42 (237)
45 KOG0718|consensus 98.3 9.5E-07 2.1E-11 70.2 5.3 71 1-73 17-105 (546)
46 KOG0721|consensus 98.3 1.5E-06 3.3E-11 63.2 5.1 28 1-28 107-134 (230)
47 PTZ00341 Ring-infected erythro 98.3 1.4E-06 3E-11 73.9 5.4 47 1-50 581-627 (1136)
48 KOG0719|consensus 98.3 1.7E-06 3.6E-11 63.8 5.0 27 1-27 22-48 (264)
49 PTZ00100 DnaJ chaperone protei 98.2 2.8E-06 6.1E-11 56.3 5.3 25 1-25 73-97 (116)
50 KOG0722|consensus 98.1 2.1E-06 4.6E-11 64.4 3.5 48 1-51 41-88 (329)
51 KOG0431|consensus 98.0 4E-06 8.6E-11 65.6 3.3 46 1-48 396-441 (453)
52 PHA02624 large T antigen; Prov 97.9 2.1E-05 4.5E-10 64.2 5.2 37 1-42 19-57 (647)
53 TIGR03835 termin_org_DnaJ term 97.9 2.7E-05 5.9E-10 64.9 5.7 41 1-43 10-50 (871)
54 KOG0550|consensus 97.7 3.8E-05 8.2E-10 60.6 3.5 44 1-44 381-424 (486)
55 KOG0714|consensus 97.7 6.3E-05 1.4E-09 52.0 4.2 41 1-41 11-51 (306)
56 KOG1150|consensus 97.5 0.0001 2.2E-09 53.8 3.6 38 1-38 61-98 (250)
57 KOG0720|consensus 97.5 0.00011 2.3E-09 58.4 3.9 38 1-40 243-280 (490)
58 PRK05014 hscB co-chaperone Hsc 97.4 0.00049 1.1E-08 47.6 5.6 25 4-28 14-38 (171)
59 PRK01356 hscB co-chaperone Hsc 97.2 0.00044 9.5E-09 47.7 3.7 25 4-28 15-39 (166)
60 PRK03578 hscB co-chaperone Hsc 97.2 0.0009 1.9E-08 46.6 5.2 25 4-28 19-43 (176)
61 PRK00294 hscB co-chaperone Hsc 97.1 0.0014 3E-08 45.6 5.2 25 4-28 17-41 (173)
62 KOG0624|consensus 97.0 0.00074 1.6E-08 53.1 3.4 47 1-48 402-450 (504)
63 TIGR00714 hscB Fe-S protein as 96.9 0.0027 6E-08 43.3 5.1 25 4-28 2-26 (157)
64 KOG1789|consensus 96.6 0.0037 8E-08 54.9 4.9 38 6-43 1298-1337(2235)
65 COG5407 SEC63 Preprotein trans 96.1 0.003 6.5E-08 50.9 1.8 28 1-28 106-133 (610)
66 PRK01773 hscB co-chaperone Hsc 94.4 0.12 2.6E-06 36.0 5.1 25 4-28 15-39 (173)
67 KOG0723|consensus 93.0 0.12 2.6E-06 34.3 3.0 42 1-42 64-106 (112)
68 KOG0568|consensus 92.7 0.28 6.2E-06 37.0 5.0 43 1-43 55-102 (342)
69 PF14687 DUF4460: Domain of un 90.1 0.67 1.5E-05 30.2 4.2 47 3-49 4-53 (112)
70 COG5269 ZUO1 Ribosome-associat 85.6 1.4 3.1E-05 33.9 4.1 46 4-49 57-102 (379)
71 COG1076 DjlA DnaJ-domain-conta 85.3 1 2.2E-05 30.8 2.9 45 2-46 122-172 (174)
72 cd08815 Death_TNFRSF25_DR3 Dea 69.8 1.8 3.9E-05 26.9 0.4 43 5-47 23-67 (77)
73 PF03656 Pam16: Pam16; InterP 64.6 7.6 0.00016 26.0 2.6 25 2-26 67-91 (127)
74 PF15224 SCRG1: Scrapie-respon 52.6 15 0.00033 22.7 2.3 52 12-67 7-63 (78)
75 KOG0724|consensus 52.1 19 0.00041 26.5 3.2 51 4-54 3-61 (335)
76 PF11833 DUF3353: Protein of u 49.3 25 0.00054 24.9 3.3 23 2-24 1-23 (194)
77 PF12434 Malate_DH: Malate deh 42.3 33 0.00071 17.5 2.2 16 7-22 10-25 (28)
78 smart00717 SANT SANT SWI3, AD 41.9 31 0.00068 17.1 2.2 42 28-74 3-46 (49)
79 cd03205 GST_C_6 GST_C family, 40.0 23 0.00051 20.9 1.7 37 25-62 30-67 (98)
80 PF08628 Nexin_C: Sorting nexi 36.2 42 0.00091 21.0 2.6 23 32-54 35-57 (113)
81 cd01801 Tsc13_N Ubiquitin-like 36.1 29 0.00062 20.3 1.7 24 2-25 20-43 (77)
82 cd03204 GST_C_GDAP1 GST_C fami 36.0 71 0.0015 20.3 3.6 39 10-49 8-46 (111)
83 TIGR03636 L23_arch archaeal ri 33.2 44 0.00095 20.4 2.2 18 1-18 21-38 (77)
84 CHL00030 rpl23 ribosomal prote 33.2 43 0.00092 21.2 2.2 26 1-27 26-51 (93)
85 KOG0718|consensus 31.3 50 0.0011 27.2 2.8 21 2-22 91-111 (546)
86 PF01823 MACPF: MAC/Perforin d 30.7 31 0.00068 22.9 1.4 21 55-75 188-209 (212)
87 cd00167 SANT 'SWI3, ADA2, N-Co 30.4 59 0.0013 15.8 2.1 40 29-73 2-43 (45)
88 PF01846 FF: FF domain; Inter 30.1 37 0.0008 18.1 1.4 12 34-45 3-14 (51)
89 cd03179 GST_C_1 GST_C family, 29.9 47 0.001 19.2 1.9 36 27-63 38-77 (105)
90 COG0089 RplW Ribosomal protein 28.5 54 0.0012 20.9 2.1 25 1-26 28-52 (94)
91 PF13340 DUF4096: Putative tra 28.4 55 0.0012 19.1 2.0 40 33-73 23-63 (75)
92 PTZ00448 hypothetical protein; 27.7 20 0.00043 28.2 -0.0 44 21-71 31-75 (373)
93 PF05621 TniB: Bacterial TniB 27.5 49 0.0011 25.1 2.1 33 15-49 199-231 (302)
94 PF12399 BCA_ABC_TP_C: Branche 27.1 22 0.00049 17.1 0.1 16 57-72 7-22 (23)
95 PRK14548 50S ribosomal protein 26.7 65 0.0014 20.0 2.2 18 1-18 28-45 (84)
96 cd03209 GST_C_Mu GST_C family, 26.6 1.1E+02 0.0023 18.7 3.2 51 8-62 14-68 (121)
97 PRK05738 rplW 50S ribosomal pr 26.4 66 0.0014 20.0 2.2 18 1-18 27-44 (92)
98 PHA02939 hypothetical protein; 26.3 1.8E+02 0.004 19.8 4.4 42 7-48 67-108 (144)
99 PF00076 RRM_1: RNA recognitio 25.4 50 0.0011 17.5 1.4 51 1-51 6-66 (70)
100 PF14027 DUF4243: Protein of u 25.1 59 0.0013 24.0 2.1 45 4-48 17-75 (329)
101 PF05384 DegS: Sensor protein 24.5 61 0.0013 22.4 1.9 16 4-19 73-88 (159)
102 TIGR01557 myb_SHAQKYF myb-like 23.4 87 0.0019 17.9 2.2 41 29-74 6-53 (57)
103 KOG1957|consensus 22.5 81 0.0018 26.0 2.5 39 3-44 146-186 (555)
104 cd03178 GST_C_Ure2p_like GST_C 21.6 1.4E+02 0.003 17.5 2.9 36 27-63 35-74 (113)
105 cd01791 Ubl5 UBL5 ubiquitin-li 20.7 74 0.0016 18.7 1.5 23 1-24 18-40 (73)
106 PF00249 Myb_DNA-binding: Myb- 20.5 61 0.0013 17.1 1.1 41 28-73 3-46 (48)
107 PHA00743 helix-turn-helix prot 20.2 85 0.0018 18.1 1.6 14 35-48 6-19 (51)
No 1
>KOG0431|consensus
Probab=99.91 E-value=3.1e-25 Score=171.65 Aligned_cols=61 Identities=49% Similarity=0.889 Sum_probs=57.9
Q ss_pred HHHHHhCCC--CcccchhchHHHHHHHHHhhhhhhcCCCCc-cccccccCCchhHHHHHHhhcC
Q psy5338 16 KACLAVHPD--KILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQLVTPADVKKSYRKACT 76 (76)
Q Consensus 16 ~~a~~~hPD--Ki~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l~~~~~vK~~y~ka~~ 76 (76)
++++.+.|. +|..|.+|+++|||+||+|||.|||++++| +|||+|||+|++|||+||||||
T Consensus 351 e~~r~~e~~d~~I~~W~~GKE~NIRALLSTLh~VLW~es~WqpVsltDLVtp~~VKKaYrKA~L 414 (453)
T KOG0431|consen 351 ELSRLMEPLDEEIRRWSEGKEGNIRALLSTLHYVLWPESGWQPVSLTDLVTPAQVKKAYRKAVL 414 (453)
T ss_pred HHHhhcchHHHHHHHhcccccccHHHHHHHHhHhhcCccCcccCchhhccCHHHHHHHHHhhhh
Confidence 457888885 899999999999999999999999999999 9999999999999999999997
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=9.3e-11 Score=89.80 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw 49 (76)
|+++||++|||||||+||++||||+++. .+.++..|+.+-..+ +||-
T Consensus 12 V~k~As~~EIKkAYRkLA~kyHPD~n~g-~~~AeeKFKEI~eAY-EVLs 58 (371)
T COG0484 12 VSKDASEEEIKKAYRKLAKKYHPDRNPG-DKEAEEKFKEINEAY-EVLS 58 (371)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHH-HHhC
Confidence 6899999999999999999999999996 467888888876654 4553
No 3
>KOG0713|consensus
Probab=99.04 E-value=3.4e-10 Score=85.79 Aligned_cols=43 Identities=23% Similarity=0.399 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|+++|+.+|||+|||+||+++|||||++. +.+...|..+...+
T Consensus 24 V~k~Asd~eIKkAYRKLALk~HPDkNpdd-p~A~e~F~~in~AY 66 (336)
T KOG0713|consen 24 VPKNASDQEIKKAYRKLALKYHPDKNPDD-PNANEKFKEINAAY 66 (336)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHH
Confidence 58999999999999999999999999975 67888888887765
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.85 E-value=5e-09 Score=79.23 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw 49 (76)
|+++||++|||||||++|+++||||++.- ..++..|..+-.. -+||-
T Consensus 11 v~~~As~~eIkkayrkla~k~HPD~~~~~-~~a~~~f~~i~~A-YevLs 57 (369)
T PRK14288 11 VEKHSNQETIKKSYRKLALKYHPDRNAGD-KEAEEKFKLINEA-YGVLS 57 (369)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCc-cHHHHHHHHHHHH-HHHhc
Confidence 57999999999999999999999998742 3355566554443 34553
No 5
>KOG0712|consensus
Probab=98.77 E-value=1.1e-08 Score=77.81 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw 49 (76)
|+++||++|||||||++|+++||||+++ +...|+++-. ..+||-
T Consensus 12 v~~~As~~eikkayrkla~k~HpDkn~~----~~ekfkei~~-AyevLs 55 (337)
T KOG0712|consen 12 VSPDASEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQ-AYEVLS 55 (337)
T ss_pred cCCCcCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHH-HHHHhc
Confidence 5789999999999999999999999996 5566666543 334553
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.75 E-value=1.6e-08 Score=76.64 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|+++||++|||+|||++|+++|||++++ ..++..|+.+-..+
T Consensus 12 v~~~a~~~eik~ayrkla~~~HPD~n~~--~~a~~~F~~i~~Ay 53 (372)
T PRK14296 12 VSKTASEQEIRQAYRKLAKQYHPDLNKS--PDAHDKMVEINEAA 53 (372)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHH
Confidence 5789999999999999999999999863 45666676554443
No 7
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.70 E-value=3.1e-08 Score=75.54 Aligned_cols=47 Identities=26% Similarity=0.344 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw 49 (76)
|+++||.+|||||||++|+++||||++.- +.++..|..|-. .-+||-
T Consensus 17 v~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~-Ay~vLs 63 (392)
T PRK14279 17 VSSDASAEEIKKAYRKLARELHPDANPGD-PAAEERFKAVSE-AHDVLS 63 (392)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHH-HHHHhc
Confidence 57899999999999999999999998742 345555654443 334443
No 8
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.68 E-value=3.6e-08 Score=74.42 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTIL 48 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vL 48 (76)
|+++||.+|||+|||++|+++|||++..-...++..|+.+...+ +||
T Consensus 12 v~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay-~vL 58 (369)
T PRK14282 12 VSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAY-EVL 58 (369)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHH-HHh
Confidence 57899999999999999999999998643234556666544443 344
No 9
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.67 E-value=4.1e-08 Score=74.35 Aligned_cols=46 Identities=24% Similarity=0.353 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTIL 48 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vL 48 (76)
|+++||.+|||+|||++|+++|||+++.- ..++..|+.+-.. .+||
T Consensus 12 v~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~A-y~vL 57 (372)
T PRK14286 12 VSKSANDEEIKSAYRKLAIKYHPDKNKGN-KESEEKFKEATEA-YEIL 57 (372)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHH-HHHh
Confidence 57899999999999999999999998642 3355556554333 3344
No 10
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.67 E-value=4.2e-08 Score=74.27 Aligned_cols=42 Identities=26% Similarity=0.425 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|+++||.+|||+|||++|+++|||++++ +.++..|+++...+
T Consensus 13 v~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay 54 (378)
T PRK14283 13 VDRNADKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAY 54 (378)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHH
Confidence 5789999999999999999999999874 45667776665554
No 11
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=98.66 E-value=1e-07 Score=54.00 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHT 46 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~ 46 (76)
|++++|.++||++|+++++.+|||+...-.+.....|+.|...++.
T Consensus 9 l~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~ 54 (60)
T smart00271 9 VPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEV 54 (60)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999998763223444555555444443
No 12
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.65 E-value=5.4e-08 Score=73.70 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTIL 48 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vL 48 (76)
|+++||.+|||||||++|+++|||++++ +.++..|..+...+ +||
T Consensus 12 v~~~a~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay-~~L 56 (371)
T PRK14287 12 VDRNASVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAY-DTL 56 (371)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHH-HHh
Confidence 5789999999999999999999999863 44556666554444 355
No 13
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.62 E-value=5.7e-08 Score=75.08 Aligned_cols=43 Identities=28% Similarity=0.437 Sum_probs=32.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw 49 (76)
|+++||.+|||||||++|+++||||+.+ ...|.. ++..-+||-
T Consensus 36 V~~~As~~eIKkAYrkla~k~HPDk~~~-----~e~F~~-i~~AYevLs 78 (421)
T PTZ00037 36 LSKDCTTSEIKKAYRKLAIKHHPDKGGD-----PEKFKE-ISRAYEVLS 78 (421)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCch-----HHHHHH-HHHHHHHhc
Confidence 5789999999999999999999999752 244544 344444553
No 14
>KOG0716|consensus
Probab=98.62 E-value=6.5e-08 Score=71.98 Aligned_cols=48 Identities=27% Similarity=0.336 Sum_probs=38.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhcC
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILWE 50 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw~ 50 (76)
|+++||.++|||+||++|+.+||||..+. ....+.-.++++.++||=+
T Consensus 39 l~k~at~d~IKKaYR~L~~k~HPD~~gd~--P~~~dkf~eIN~Ay~ILsD 86 (279)
T KOG0716|consen 39 LPKTATKDEIKKAYRKLALKYHPDKNGDN--PEATDKFKEINTAYAILSD 86 (279)
T ss_pred CCcccchHHHHHHHHHHHHHhCCCcCCCC--chhHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999998865 4455566666777777743
No 15
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.62 E-value=7.4e-08 Score=70.74 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw 49 (76)
|+++||.+|||+|||++|+.+|||++.+ ..++..|..+- ..-+||.
T Consensus 12 v~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~-~Ay~~L~ 57 (291)
T PRK14299 12 VPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEIN-EAYTVLS 57 (291)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHH-HHHHHhc
Confidence 5789999999999999999999999863 34555555443 3334454
No 16
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.61 E-value=7.5e-08 Score=73.38 Aligned_cols=47 Identities=23% Similarity=0.302 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw 49 (76)
|+++||.+|||+|||++|+++|||++..- ..++..|+.| +..-+||-
T Consensus 17 v~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i-~~Ay~vL~ 63 (389)
T PRK14295 17 VPKDATEAEIKKAYRKLAREYHPDANKGD-AKAEERFKEI-SEAYDVLS 63 (389)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hhHHHHHHHH-HHHHHHHC
Confidence 57899999999999999999999998642 3455666544 44444553
No 17
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.61 E-value=7.9e-08 Score=72.67 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=35.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhcC
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILWE 50 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw~ 50 (76)
|+++||.+|||+|||++|+++||||+..- +.++..|+.+-. .-+||-+
T Consensus 11 v~~~a~~~eIk~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~-Ay~vL~d 58 (365)
T PRK14285 11 LSKGASKDEIKKAYRKIAIKYHPDKNKGN-KEAESIFKEATE-AYEVLID 58 (365)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHH-HHHHHcC
Confidence 57899999999999999999999998642 334555654443 4445544
No 18
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=98.61 E-value=1.7e-07 Score=52.16 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLC 42 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~ 42 (76)
+++++|.++||++||++++.+|||+...- +.....|..|..
T Consensus 8 l~~~~~~~~ik~~y~~l~~~~HPD~~~~~-~~~~~~~~~l~~ 48 (55)
T cd06257 8 VPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINE 48 (55)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHH
Confidence 46889999999999999999999987631 234444444433
No 19
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.59 E-value=8.9e-08 Score=72.68 Aligned_cols=45 Identities=24% Similarity=0.472 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTIL 48 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vL 48 (76)
|+++||.+|||+|||++|+++|||++.+ ..++..|+.+-..+ +||
T Consensus 11 v~~~a~~~eik~ayr~la~~~hpD~~~~--~~a~~~f~~i~~Ay-~vL 55 (378)
T PRK14278 11 VSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAY-EVL 55 (378)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHH-HHh
Confidence 5789999999999999999999999873 44556666554444 355
No 20
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.59 E-value=9.3e-08 Score=72.56 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw 49 (76)
|+++||.+|||+|||++|+.+|||++.+ ..++..|+.+ +...+||-
T Consensus 11 v~~~a~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i-~~Ay~vLs 56 (382)
T PRK14291 11 VSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEI-NEAYQVLS 56 (382)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHH-HHHHHHhc
Confidence 5789999999999999999999999874 3455556544 33334553
No 21
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.59 E-value=9.3e-08 Score=72.75 Aligned_cols=42 Identities=26% Similarity=0.421 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCS 43 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~ 43 (76)
|+++||++|||||||++|+.+|||++++- +.++..|+.+...
T Consensus 9 v~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~i~~A 50 (391)
T PRK14284 9 VSKTASPEEIKKAYRKLAVKYHPDKNPGD-AEAEKRFKEVSEA 50 (391)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHH
Confidence 57899999999999999999999998742 3455556544433
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.59 E-value=1e-07 Score=71.88 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTIL 48 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vL 48 (76)
|+++||.+|||+|||++|+++|||+++.- +.++..|..+-. .-+||
T Consensus 12 v~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~~~~f~~~~~-Ay~vL 57 (366)
T PRK14294 12 VTRDASEEEIKKSYRKLAMKYHPDRNPGD-KEAEELFKEAAE-AYEVL 57 (366)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCc-hHHHHHHHHHHH-HHHHh
Confidence 57899999999999999999999998742 234555655543 33444
No 23
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.58 E-value=1.1e-07 Score=71.77 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw 49 (76)
|+++||.+|||+|||++|+++|||+++.-.+.++..|+.+...+ +||-
T Consensus 11 v~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay-~~L~ 58 (365)
T PRK14290 11 VDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAY-EVLS 58 (365)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHH-HHhc
Confidence 57899999999999999999999998753334666676555444 4443
No 24
>KOG0691|consensus
Probab=98.58 E-value=9.8e-08 Score=71.42 Aligned_cols=46 Identities=33% Similarity=0.432 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTIL 48 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vL 48 (76)
|+.+||.+||+||||..|+++||||+++..+ +..+|..|=..+ +||
T Consensus 13 i~~~at~~eIkKaYr~kaL~~HPDKNp~dP~-A~ekFq~L~eAy-~VL 58 (296)
T KOG0691|consen 13 ISEDATDAEIKKAYRKKALQYHPDKNPGDPQ-AAEKFQELSEAY-EVL 58 (296)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHHHH-HHh
Confidence 4678999999999999999999999999866 888998665554 444
No 25
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.57 E-value=1.1e-07 Score=72.02 Aligned_cols=45 Identities=29% Similarity=0.467 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTIL 48 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vL 48 (76)
|+++||.+|||+|||++|+.+|||++++ ..++..|+.+...+ +||
T Consensus 12 v~~~a~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay-~vL 56 (376)
T PRK14280 12 VSKSASKDEIKKAYRKLSKKYHPDINKE--EGADEKFKEISEAY-EVL 56 (376)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHH-HHh
Confidence 5789999999999999999999999863 45566666554444 344
No 26
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.57 E-value=1.2e-07 Score=71.94 Aligned_cols=46 Identities=26% Similarity=0.346 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw 49 (76)
|+++||.+|||+|||++|+.+|||++.+ ..++..|..|- ..-+||-
T Consensus 12 v~~~a~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~-~Ay~vL~ 57 (380)
T PRK14276 12 VSKDASQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQ-EAYETLS 57 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHH-HHHHHhc
Confidence 5789999999999999999999999873 34555665444 4444553
No 27
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.56 E-value=1.3e-07 Score=71.94 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=34.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTIL 48 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vL 48 (76)
|+++||.+|||+|||++|+++|||+++.- ..++..|..+...+ +||
T Consensus 13 v~~~a~~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay-~vL 58 (386)
T PRK14277 13 VDRNATEEEIKKAYRRLAKKYHPDLNPGD-KEAEQKFKEINEAY-EIL 58 (386)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHHHHHHH-HHh
Confidence 57899999999999999999999998742 23445555444443 344
No 28
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.56 E-value=1.3e-07 Score=71.91 Aligned_cols=47 Identities=28% Similarity=0.440 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhcC
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILWE 50 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw~ 50 (76)
|+++||.+|||+|||++|+++|||++++ ..++..|+.+-.. -+||-+
T Consensus 13 v~~~a~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~A-y~vL~d 59 (377)
T PRK14298 13 LSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEA-YAVLSD 59 (377)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCccccCC--hhHHHHHHHHHHH-HHHhcc
Confidence 5789999999999999999999999863 4566667654444 345543
No 29
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.56 E-value=1.3e-07 Score=71.61 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhcC
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILWE 50 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw~ 50 (76)
|+++||.+|||+|||++|+.+|||++..- +.++..|+.|...+ +||-+
T Consensus 12 v~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay-~vL~d 59 (380)
T PRK14297 12 LEKGASDDEIKKAFRKLAIKYHPDKNKGN-KEAEEKFKEINEAY-QVLSD 59 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHH-HHhcC
Confidence 57899999999999999999999998642 34556666554444 45533
No 30
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.54 E-value=1.7e-07 Score=70.72 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTIL 48 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vL 48 (76)
|+++||.+|||+|||++|+.+||||+..- ..++..|+.+-..+ +||
T Consensus 12 v~~~as~~eik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~Ay-~~L 57 (371)
T PRK10767 12 VSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAY-EVL 57 (371)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCc-HHHHHHHHHHHHHH-HHh
Confidence 57899999999999999999999998642 23445555544444 444
No 31
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=98.54 E-value=3e-07 Score=52.96 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEW 29 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W 29 (76)
|+++++.++||++|+++++.+|||++..-
T Consensus 8 l~~~~~~~eik~~y~~l~~~~HPD~~~~~ 36 (64)
T PF00226_consen 8 LPPDASDEEIKKAYRRLSKQYHPDKNSGD 36 (64)
T ss_dssp STTTSSHHHHHHHHHHHHHHTSTTTGTST
T ss_pred CCCCCCHHHHHHHHHhhhhccccccchhh
Confidence 57899999999999999999999998753
No 32
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.54 E-value=1.6e-07 Score=71.20 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw 49 (76)
|+++||.+|||+|||++|+++||||+..- +.++..|..+-. .-+||-
T Consensus 12 v~~~a~~~~ik~ayr~la~~~HPD~~~~~-~~a~~~f~~i~~-Ay~vL~ 58 (373)
T PRK14301 12 VSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAE-AYEVLR 58 (373)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCcCCCC-hHHHHHHHHHHH-HHHHhc
Confidence 57899999999999999999999998742 334555654443 334553
No 33
>PHA03102 Small T antigen; Reviewed
Probab=98.51 E-value=2.1e-07 Score=63.98 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=24.7
Q ss_pred CCCCC--CHHHHHHHHHHHHHHhCCCCcc
Q psy5338 1 MSQLV--TPADVKKSYRKACLAVHPDKIL 27 (76)
Q Consensus 1 ~~~~a--t~~eikkayr~~a~~~hPDKi~ 27 (76)
|+++| |.+|||+|||++|+.+||||..
T Consensus 13 l~~~A~~s~~eIKkAYr~la~~~HPDkgg 41 (153)
T PHA03102 13 LPRSAWGNLPLMRKAYLRKCLEFHPDKGG 41 (153)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCcCCCc
Confidence 57889 9999999999999999999953
No 34
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.50 E-value=2.3e-07 Score=70.84 Aligned_cols=47 Identities=26% Similarity=0.388 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw 49 (76)
|+++||.+|||||||++|+.+||||+..- ..++..|+. ++..-+||-
T Consensus 11 v~~~a~~~eikkayr~la~~~HPD~~~~~-~~a~~~f~~-i~~Ay~vL~ 57 (397)
T PRK14281 11 VSRSADKDEIKKAYRKLALKYHPDKNPDN-KEAEEHFKE-VNEAYEVLS 57 (397)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCcCCCc-hHHHHHHHH-HHHHHHHhh
Confidence 57899999999999999999999998642 234455544 344444543
No 35
>KOG0717|consensus
Probab=98.50 E-value=1.8e-07 Score=73.94 Aligned_cols=44 Identities=25% Similarity=0.398 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|+++|+..|||++||++|+++||||+++-.+.+...|+.|-+.+
T Consensus 16 v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAY 59 (508)
T KOG0717|consen 16 VERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAY 59 (508)
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999876667777787776665
No 36
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.49 E-value=2.6e-07 Score=69.15 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTIL 48 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vL 48 (76)
|+++||.+|||+|||++|+.+|||++. ...++..|..|...+ +||
T Consensus 8 v~~~a~~~~ik~ayr~la~~~HPD~~~--~~~~~~~f~~i~~Ay-~vL 52 (354)
T TIGR02349 8 VSKDASEEEIKKAYRKLAKKYHPDRNK--DKEAEEKFKEINEAY-EVL 52 (354)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCC--CccHHHHHHHHHHHH-HHh
Confidence 578999999999999999999999986 334555555444433 344
No 37
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.49 E-value=2.6e-07 Score=69.93 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=33.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|+++||.+|||+|||++|+.+|||++.. ..++..|+.+...+
T Consensus 11 v~~~as~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay 52 (372)
T PRK14300 11 VSKTASQADLKKAYLKLAKQYHPDTTDA--KDAEKKFKEINAAY 52 (372)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHH
Confidence 5789999999999999999999999862 44566666655544
No 38
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.48 E-value=2.9e-07 Score=67.97 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCS 43 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~ 43 (76)
|+++||.+|||+|||++|+++|||++.+ +.++..|..+-..
T Consensus 12 v~~~a~~~eik~ayr~la~k~HPD~~~~--~~~~~~f~~i~~A 52 (306)
T PRK10266 12 VKPTDDLKTIKTAYRRLARKYHPDVSKE--PDAEARFKEVAEA 52 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHH
Confidence 5789999999999999999999999763 3455555544443
No 39
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.42 E-value=4.7e-07 Score=68.65 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALL 41 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL 41 (76)
|+++||.+|||+|||++|+.+|||+++.- ..++..|..+-
T Consensus 13 v~~~a~~~eik~ayr~la~~~HpD~~~~~-~~a~~~f~~i~ 52 (386)
T PRK14289 13 VSKTATVDEIKKAYRKKAIQYHPDKNPGD-KEAEEKFKEAA 52 (386)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCC-hHHHHHHHHHH
Confidence 57899999999999999999999998742 23444555433
No 40
>KOG0715|consensus
Probab=98.41 E-value=4.5e-07 Score=67.18 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLH 45 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~ 45 (76)
++++||..|||+||+++|+.+|||-+.+ ++++..|..+-+.++
T Consensus 51 v~~~At~~EIK~Af~~LaKkyHPD~n~~--~~a~~kF~eI~~AYE 93 (288)
T KOG0715|consen 51 VSRNATLSEIKSAFRKLAKKYHPDVNKD--KEASKKFKEISEAYE 93 (288)
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCCCCC--cchhhHHHHHHHHHH
Confidence 5789999999999999999999997663 478888888777764
No 41
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.39 E-value=5.9e-07 Score=65.76 Aligned_cols=47 Identities=26% Similarity=0.380 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccc------hhchHHHHHHHHHhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEW------TEGKKGNIRALLCSLHTI 47 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W------~e~ke~n~R~LL~~l~~v 47 (76)
+++++|.+|||++||++++.+||||+..= .+.++..|+.+...++.+
T Consensus 208 v~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L 260 (267)
T PRK09430 208 VSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELI 260 (267)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999997531 123556777777666544
No 42
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.38 E-value=6.8e-07 Score=67.41 Aligned_cols=48 Identities=27% Similarity=0.468 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhcCC
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILWEG 51 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw~~ 51 (76)
|+++||.+|||+|||++|+++|||++.+ ..++..| ..++..-+||.+.
T Consensus 10 v~~~a~~~~ik~ayr~l~~~~hpD~~~~--~~a~~~~-~~i~~Ay~vL~d~ 57 (371)
T PRK14292 10 VSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKF-AQINEAYAVLSDA 57 (371)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCC--hhHHHHH-HHHHHHHHHhcch
Confidence 5789999999999999999999999863 2344444 5555555677653
No 43
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.37 E-value=7.7e-07 Score=67.36 Aligned_cols=45 Identities=22% Similarity=0.391 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTIL 48 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vL 48 (76)
|+++||.+|||+|||++|+.+|||++.+ ..++..|..+-.. -+||
T Consensus 11 v~~~a~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~A-y~vL 55 (374)
T PRK14293 11 VSRDADKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRA-YEVL 55 (374)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHHH-HHHH
Confidence 5789999999999999999999999873 3455555444333 3344
No 44
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.7e-06 Score=56.99 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEW 29 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W 29 (76)
|+++||..||++|||++|+.+|||++..-
T Consensus 14 v~~~as~~eik~ayrkla~~~HPD~~~~~ 42 (237)
T COG2214 14 VPPNASLEEIKKAYRKLALKYHPDRNPGD 42 (237)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCCc
Confidence 46899999999999999999999998854
No 45
>KOG0718|consensus
Probab=98.32 E-value=9.5e-07 Score=70.18 Aligned_cols=71 Identities=20% Similarity=0.382 Sum_probs=48.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchh--chHHHHHHHHHhhhhhhcCC----------------CCccccccccC
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTE--GKKGNIRALLCSLHTILWEG----------------AKWKCEMSQLV 62 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e--~ke~n~R~LL~~l~~vLw~~----------------~~w~v~~~~l~ 62 (76)
++++||.+|||+|||++++.+||||..+-.. .++.+| ..+....+||-+. .||.|. .-.-
T Consensus 17 lpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F-~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~gwEl~-~r~~ 94 (546)
T KOG0718|consen 17 LPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKF-QRIQRAYEVLSDPQKRAIYDNYGEQGLKTEGWELG-FRGK 94 (546)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHhhhccccccCceee-cCCC
Confidence 5799999999999999999999999986432 455555 4456666776542 255221 1234
Q ss_pred CchhHHHHHHh
Q psy5338 63 TPADVKKSYRK 73 (76)
Q Consensus 63 ~~~~vK~~y~k 73 (76)
+|..+|.-|.+
T Consensus 95 tpeEIreE~Er 105 (546)
T KOG0718|consen 95 TPEEIREEYER 105 (546)
T ss_pred CHHHHHHHHHH
Confidence 67777777764
No 46
>KOG0721|consensus
Probab=98.28 E-value=1.5e-06 Score=63.23 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCccc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILE 28 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~ 28 (76)
|++++|++|||||||+|..++||||++.
T Consensus 107 l~pgas~~eIKkaYR~LSik~HPDK~~~ 134 (230)
T KOG0721|consen 107 LDPGASEKEIKKAYRRLSIKYHPDKQPP 134 (230)
T ss_pred CCCCCCHHHHHHHHHHhhhhhCCCcCCC
Confidence 5789999999999999999999999874
No 47
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.27 E-value=1.4e-06 Score=73.86 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhcC
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILWE 50 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw~ 50 (76)
|+++||.+|||||||++|+.+||||++. ..+...|+.+-..+ +||-+
T Consensus 581 Vs~dAS~~EIKKAYRKLAlkyHPDKN~~--~~A~ekFq~I~EAY-eVLSD 627 (1136)
T PTZ00341 581 VGVNADMKEISERYFKLAENYYPPKRSG--NEGFHKFKKINEAY-QILGD 627 (1136)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCC--chHHHHHHHHHHHH-HHhCC
Confidence 5789999999999999999999999875 24666777665444 44533
No 48
>KOG0719|consensus
Probab=98.26 E-value=1.7e-06 Score=63.85 Aligned_cols=27 Identities=33% Similarity=0.575 Sum_probs=25.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKIL 27 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~ 27 (76)
|.++||+.+|+|||+++|+.+||||+.
T Consensus 22 Ver~a~~~eIrkAY~klal~~HPDk~~ 48 (264)
T KOG0719|consen 22 VERDATDKEIRKAYHKLALRLHPDKNH 48 (264)
T ss_pred hcccCCHHHHHHHHHHHHHHhCCCcch
Confidence 468999999999999999999999996
No 49
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.24 E-value=2.8e-06 Score=56.29 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=23.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCC
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDK 25 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDK 25 (76)
+++++|.+|||++||++++.+|||+
T Consensus 73 v~~~As~~eIkkaYRrLa~~~HPDk 97 (116)
T PTZ00100 73 ISPTASKERIREAHKQLMLRNHPDN 97 (116)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 5789999999999999999999997
No 50
>KOG0722|consensus
Probab=98.14 E-value=2.1e-06 Score=64.40 Aligned_cols=48 Identities=17% Similarity=0.316 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhcCC
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILWEG 51 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw~~ 51 (76)
++++++.+||.||||++|+++|||++.+ ...+..-.++++.-++|-++
T Consensus 41 V~Rea~KseIakAYRqLARrhHPDr~r~---~e~k~~F~~iAtayeilkd~ 88 (329)
T KOG0722|consen 41 VAREANKSEIAKAYRQLARRHHPDRNRD---PESKKLFVKIATAYEILKDN 88 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHhCCcccCC---chhhhhhhhhhcccccccch
Confidence 4688999999999999999999999874 22224445556666666543
No 51
>KOG0431|consensus
Probab=98.03 E-value=4e-06 Score=65.65 Aligned_cols=46 Identities=43% Similarity=0.678 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTIL 48 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vL 48 (76)
|+...|+++|||+||+..+.+||||++. .|..-.-+.|.+.+.++|
T Consensus 396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq--~gas~~qK~Iaekvfd~l 441 (453)
T KOG0431|consen 396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQ--KGASLEQKYIAEKVFDAL 441 (453)
T ss_pred hhhccCHHHHHHHHHhhhheeCcccccC--CcccHHHHHHHHHHHHHH
Confidence 4567899999999999999999999994 456666667777777777
No 52
>PHA02624 large T antigen; Provisional
Probab=97.89 E-value=2.1e-05 Score=64.18 Aligned_cols=37 Identities=24% Similarity=0.464 Sum_probs=29.0
Q ss_pred CCCCC--CHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHH
Q psy5338 1 MSQLV--TPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLC 42 (76)
Q Consensus 1 ~~~~a--t~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~ 42 (76)
|+++| |.++||+|||++|+.+||||. |.+..|+.|..
T Consensus 19 L~~~A~gs~~eIKkAYRkLAkkyHPDKg-----Gdeekfk~Ln~ 57 (647)
T PHA02624 19 LPMAAWGNLPLMRKAYLRKCKEYHPDKG-----GDEEKMKRLNS 57 (647)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCcCCC-----CcHHHHHHHHH
Confidence 57889 999999999999999999984 33445554433
No 53
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=97.88 E-value=2.7e-05 Score=64.93 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCS 43 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~ 43 (76)
|+++|+.++||+|||++|+.+||||... ..+...|+.+...
T Consensus 10 Vs~dAS~eEIKKAYRKLAKKyHPDKn~~--~eAeekFqeINEA 50 (871)
T TIGR03835 10 IDRDADEQEIKKAFRKLAKKYHPDRNKA--PDAASIFAEINEA 50 (871)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHH
Confidence 5789999999999999999999999875 4445556554333
No 54
>KOG0550|consensus
Probab=97.69 E-value=3.8e-05 Score=60.65 Aligned_cols=44 Identities=25% Similarity=0.375 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
+.++|+..|||+|||++|+.+|||++..-...+|..||..-..+
T Consensus 381 i~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy 424 (486)
T KOG0550|consen 381 ISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAY 424 (486)
T ss_pred hhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHH
Confidence 46789999999999999999999998765557777788766553
No 55
>KOG0714|consensus
Probab=97.68 E-value=6.3e-05 Score=51.98 Aligned_cols=41 Identities=29% Similarity=0.459 Sum_probs=29.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALL 41 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL 41 (76)
+.++|+.+||++||+++|+.+||||+..-...++..|..+-
T Consensus 11 i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ 51 (306)
T KOG0714|consen 11 IARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIA 51 (306)
T ss_pred ccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhh
Confidence 35688999999999999999999996643223444444443
No 56
>KOG1150|consensus
Probab=97.52 E-value=0.0001 Score=53.83 Aligned_cols=38 Identities=37% Similarity=0.495 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIR 38 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R 38 (76)
|.+..|.++||+.||++...+|||||++..+.+..-|-
T Consensus 61 Idpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFd 98 (250)
T KOG1150|consen 61 IDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFD 98 (250)
T ss_pred cCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHH
Confidence 46788999999999999999999999998776655553
No 57
>KOG0720|consensus
Probab=97.52 E-value=0.00011 Score=58.36 Aligned_cols=38 Identities=34% Similarity=0.559 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRAL 40 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~L 40 (76)
|+++++.++|||+||++|...||||+. .++++.-|..|
T Consensus 243 l~~d~sd~~lKk~Yrk~A~LVhPDKn~--~~~A~Eafk~L 280 (490)
T KOG0720|consen 243 LPSDCSDADLKKNYRKKAMLVHPDKNM--IPRAEEAFKKL 280 (490)
T ss_pred CCCCCCHHHHHHHHHhhceEeCCCccC--ChhHHHHHHHH
Confidence 467899999999999999999999998 44555555444
No 58
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=97.40 E-value=0.00049 Score=47.56 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCccc
Q psy5338 4 LVTPADVKKSYRKACLAVHPDKILE 28 (76)
Q Consensus 4 ~at~~eikkayr~~a~~~hPDKi~~ 28 (76)
+++..+|+++||++++.+||||...
T Consensus 14 ~~d~~~L~~~yr~l~~~~HPDk~~~ 38 (171)
T PRK05014 14 DIDTQLLASRYQELQRQFHPDKFAN 38 (171)
T ss_pred CCCHHHHHHHHHHHHHHhCcCCCCC
Confidence 4778999999999999999999764
No 59
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=97.21 E-value=0.00044 Score=47.69 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCccc
Q psy5338 4 LVTPADVKKSYRKACLAVHPDKILE 28 (76)
Q Consensus 4 ~at~~eikkayr~~a~~~hPDKi~~ 28 (76)
+++.++|+++||++++.+||||...
T Consensus 15 ~id~~~L~~aYr~lq~~~HPDk~~~ 39 (166)
T PRK01356 15 NIDLKILEKQYFAMQVKYHPDKAKT 39 (166)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 3789999999999999999999763
No 60
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=97.20 E-value=0.0009 Score=46.59 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCccc
Q psy5338 4 LVTPADVKKSYRKACLAVHPDKILE 28 (76)
Q Consensus 4 ~at~~eikkayr~~a~~~hPDKi~~ 28 (76)
+++..+|+++||++++.+|||+...
T Consensus 19 ~~d~~~L~~~yr~lq~~~HPD~~~~ 43 (176)
T PRK03578 19 ALDEAALDAAYRTVQAQVHPDRFAA 43 (176)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 4688999999999999999999864
No 61
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=97.08 E-value=0.0014 Score=45.64 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCccc
Q psy5338 4 LVTPADVKKSYRKACLAVHPDKILE 28 (76)
Q Consensus 4 ~at~~eikkayr~~a~~~hPDKi~~ 28 (76)
+.+.++|+++||++++.+|||+...
T Consensus 17 ~id~~~L~~~Yr~Lq~~~HPDk~~~ 41 (173)
T PRK00294 17 RLDLDQLATRYRELAREVHPDRFAD 41 (173)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 4678999999999999999999754
No 62
>KOG0624|consensus
Probab=96.98 E-value=0.00074 Score=53.11 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchh--chHHHHHHHHHhhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTE--GKKGNIRALLCSLHTIL 48 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e--~ke~n~R~LL~~l~~vL 48 (76)
+.++|+..||-||||++|.+.|||-.++-.+ .+++.|-.+- ..-+||
T Consensus 402 VkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIA-AAKEVL 450 (504)
T KOG0624|consen 402 VKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIA-AAKEVL 450 (504)
T ss_pred hcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHH-HHHHhh
Confidence 4689999999999999999999997765433 4555555443 234555
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=96.87 E-value=0.0027 Score=43.28 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCccc
Q psy5338 4 LVTPADVKKSYRKACLAVHPDKILE 28 (76)
Q Consensus 4 ~at~~eikkayr~~a~~~hPDKi~~ 28 (76)
+.+..+|+++||++++.+|||+...
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~ 26 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFAS 26 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 3578899999999999999998653
No 64
>KOG1789|consensus
Probab=96.57 E-value=0.0037 Score=54.90 Aligned_cols=38 Identities=34% Similarity=0.471 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHhCCCCcccchh--chHHHHHHHHHh
Q psy5338 6 TPADVKKSYRKACLAVHPDKILEWTE--GKKGNIRALLCS 43 (76)
Q Consensus 6 t~~eikkayr~~a~~~hPDKi~~W~e--~ke~n~R~LL~~ 43 (76)
..+.|||+|+++|.+|||||+++=.+ .+.+..-.+|++
T Consensus 1298 ~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1298 KPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSS 1337 (2235)
T ss_pred cHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH
Confidence 34889999999999999999996544 455666777774
No 65
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=96.12 E-value=0.003 Score=50.85 Aligned_cols=28 Identities=36% Similarity=0.554 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCccc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILE 28 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~ 28 (76)
|+++++..+|||+||++..++||||...
T Consensus 106 I~~~ts~rdik~~yr~Ls~KfhpdK~~~ 133 (610)
T COG5407 106 IDQDTSERDIKKRYRMLSMKFHPDKAPP 133 (610)
T ss_pred ccCCCcHHHHHHHHHhheeecChhhcCC
Confidence 4688999999999999999999999875
No 66
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=94.37 E-value=0.12 Score=35.95 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCccc
Q psy5338 4 LVTPADVKKSYRKACLAVHPDKILE 28 (76)
Q Consensus 4 ~at~~eikkayr~~a~~~hPDKi~~ 28 (76)
+.+...+++.||++.+.+|||+...
T Consensus 15 ~iD~~~L~~~y~~Lq~~~HPD~f~~ 39 (173)
T PRK01773 15 QLDNALLSERYLALQKSLHPDNFAN 39 (173)
T ss_pred CCCHHHHHHHHHHHHHHhCcCcccC
Confidence 4788999999999999999998764
No 67
>KOG0723|consensus
Probab=93.03 E-value=0.12 Score=34.28 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=31.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCccc-chhchHHHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILE-WTEGKKGNIRALLC 42 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~-W~e~ke~n~R~LL~ 42 (76)
++++++.+.||.|.|+.....|||+=-. .-..+.++...+|.
T Consensus 64 v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe 106 (112)
T KOG0723|consen 64 VTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLE 106 (112)
T ss_pred CCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHh
Confidence 5689999999999999999999996331 11245566666664
No 68
>KOG0568|consensus
Probab=92.70 E-value=0.28 Score=36.96 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccch--h---chHHHHHHHHHh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWT--E---GKKGNIRALLCS 43 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~--e---~ke~n~R~LL~~ 43 (76)
+..+|+++|++.||.++|+++|||-=.+-+ + +-+.-||..|+.
T Consensus 55 v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 55 VEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred ccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999433211 1 233446655554
No 69
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=90.08 E-value=0.67 Score=30.24 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=33.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCcccch---hchHHHHHHHHHhhhhhhc
Q psy5338 3 QLVTPADVKKSYRKACLAVHPDKILEWT---EGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 3 ~~at~~eikkayr~~a~~~hPDKi~~W~---e~ke~n~R~LL~~l~~vLw 49 (76)
+..+..+++.|.|..-+..|||-...-. +-.++.++.|.+-|+.+-=
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 5667889999999999999999544332 2345557777776766653
No 70
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=85.63 E-value=1.4 Score=33.88 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhc
Q psy5338 4 LVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 4 ~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw 49 (76)
-|++.+|.++.++....|||||-..=.+.....|-.|+...-+||-
T Consensus 57 ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~ 102 (379)
T COG5269 57 KAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLG 102 (379)
T ss_pred CCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhc
Confidence 4788999999999999999997642222233445566666555553
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.29 E-value=1 Score=30.81 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCccc------chhchHHHHHHHHHhhhh
Q psy5338 2 SQLVTPADVKKSYRKACLAVHPDKILE------WTEGKKGNIRALLCSLHT 46 (76)
Q Consensus 2 ~~~at~~eikkayr~~a~~~hPDKi~~------W~e~ke~n~R~LL~~l~~ 46 (76)
...+...+|+++||++...+|||+... +-+..+..+..+...+..
T Consensus 122 ~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~ 172 (174)
T COG1076 122 EIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYED 172 (174)
T ss_pred chhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 346778999999999999999996542 123444455555555443
No 72
>cd08815 Death_TNFRSF25_DR3 Death domain of Tumor Necrosis Factor Receptor superfamily 25. Death Domain (DD) found in Tumor Necrosis Factor (TNF) receptor superfamily 25 (TNFRSF25), also known as TRAMP (TNF receptor-related apoptosis-mediating protein), LARD, APO-3, WSL-1, or DR3 (Death Receptor-3). TNFRSF25 is primarily expressed in T cells, is activated by binding to its ligand TL1A, and plays an important role in T-cell function. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=69.85 E-value=1.8 Score=26.91 Aligned_cols=43 Identities=9% Similarity=0.248 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHH--HHHhCCCCcccchhchHHHHHHHHHhhhhh
Q psy5338 5 VTPADVKKSYRKA--CLAVHPDKILEWTEGKKGNIRALLCSLHTI 47 (76)
Q Consensus 5 at~~eikkayr~~--a~~~hPDKi~~W~e~ke~n~R~LL~~l~~v 47 (76)
.++.+|+++.... .+.-+-+.+..|.++..+.+..||.+|+++
T Consensus 23 Lsdn~Ie~~E~~~~~~rda~y~ML~~W~~q~~a~~n~Ll~aL~~m 67 (77)
T cd08815 23 LREAEIEAVELEIGRFRDQQYEMLKRWRQQQPAGLDAVYAALERM 67 (77)
T ss_pred CcHhHHHHHHhcccchHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4667788766555 444444577889887788899999998765
No 73
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=64.56 E-value=7.6 Score=25.96 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCc
Q psy5338 2 SQLVTPADVKKSYRKACLAVHPDKI 26 (76)
Q Consensus 2 ~~~at~~eikkayr~~a~~~hPDKi 26 (76)
++..+.++|.+.|..|....||+|-
T Consensus 67 ~~~~~~eeI~k~y~~Lf~~Nd~~kG 91 (127)
T PF03656_consen 67 KEELSREEIQKRYKHLFKANDPSKG 91 (127)
T ss_dssp -G--SHHHHHHHHHHHHHHT-CCCT
T ss_pred CCccCHHHHHHHHHHHHhccCCCcC
Confidence 4568899999999999999999863
No 74
>PF15224 SCRG1: Scrapie-responsive protein 1
Probab=52.55 E-value=15 Score=22.66 Aligned_cols=52 Identities=27% Similarity=0.509 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhcCCCCc----cccccccC-CchhH
Q psy5338 12 KSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILWEGAKW----KCEMSQLV-TPADV 67 (76)
Q Consensus 12 kayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw~~~~w----~v~~~~l~-~~~~v 67 (76)
+.||++.+.+.=--++ .-.+++|.+=.+|++-.|+|.|. -...++|+ .|+.+
T Consensus 7 sCyrk~L~D~nCH~iP----eG~~~L~~id~~lqdHFW~GkgCEmiCYCNf~ELLCCPkdi 63 (78)
T PF15224_consen 7 SCYRKILKDHNCHNIP----EGVADLRQIDVNLQDHFWEGKGCEMICYCNFSELLCCPKDI 63 (78)
T ss_pred hHHHHHhccCCcCcCc----hhhhhhhhhccchhhhcccCCCceEEEEeCchHhhcCcccc
Confidence 4677777655443343 45677999999999999999987 33566654 55543
No 75
>KOG0724|consensus
Probab=52.10 E-value=19 Score=26.53 Aligned_cols=51 Identities=27% Similarity=0.475 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcc------cchhchHHHHHHHHHhhhh--hhcCCCCc
Q psy5338 4 LVTPADVKKSYRKACLAVHPDKIL------EWTEGKKGNIRALLCSLHT--ILWEGAKW 54 (76)
Q Consensus 4 ~at~~eikkayr~~a~~~hPDKi~------~W~e~ke~n~R~LL~~l~~--vLw~~~~w 54 (76)
.++..++..+|++.+..+||++.. .|.+.....|+.-+..+.. -.|....|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 467889999999999999999773 3877778888888888764 23554555
No 76
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=49.28 E-value=25 Score=24.87 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCC
Q psy5338 2 SQLVTPADVKKSYRKACLAVHPD 24 (76)
Q Consensus 2 ~~~at~~eikkayr~~a~~~hPD 24 (76)
+++|+-+||++|+..+..++--|
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd 23 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD 23 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC
Confidence 57899999999999999998776
No 77
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=42.32 E-value=33 Score=17.49 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhC
Q psy5338 7 PADVKKSYRKACLAVH 22 (76)
Q Consensus 7 ~~eikkayr~~a~~~h 22 (76)
.++.+.+.|+.|+.+|
T Consensus 10 ~~~~r~~lR~AALeYH 25 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYH 25 (28)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 3677778899999998
No 78
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=41.94 E-value=31 Score=17.08 Aligned_cols=42 Identities=19% Similarity=0.353 Sum_probs=26.0
Q ss_pred cchhchHHHHHHHHHhhhhhhcCCCCc-ccccccc-CCchhHHHHHHhh
Q psy5338 28 EWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQL-VTPADVKKSYRKA 74 (76)
Q Consensus 28 ~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l-~~~~~vK~~y~ka 74 (76)
.|++.....|..++..+.. .+| .|+-.-- =++.+|+..|...
T Consensus 3 ~Wt~~E~~~l~~~~~~~g~-----~~w~~Ia~~~~~rt~~~~~~~~~~~ 46 (49)
T smart00717 3 EWTEEEDELLIELVKKYGK-----NNWEKIAKELPGRTAEQCRERWNNL 46 (49)
T ss_pred CCCHHHHHHHHHHHHHHCc-----CCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4766666667666666644 567 6554432 3567788777653
No 79
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=39.98 E-value=23 Score=20.93 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=29.4
Q ss_pred CcccchhchHHHHHHHHHhhhhhhcCCCCc-cccccccC
Q psy5338 25 KILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQLV 62 (76)
Q Consensus 25 Ki~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l~ 62 (76)
+.+...+.....+...|..+++.| .+..| .+|+.|+.
T Consensus 30 ~~~~~~~~~~~~~~~~l~~le~~L-~~~~~d~~TlADi~ 67 (98)
T cd03205 30 RSQPWLERQRGKIERALDALEAEL-AKLPLDPLDLADIA 67 (98)
T ss_pred hChHHHHHHHHHHHHHHHHHHHhh-hhCCCCCCCHHHHH
Confidence 344455678888999999999999 56789 89999966
No 80
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=36.21 E-value=42 Score=20.97 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=20.0
Q ss_pred chHHHHHHHHHhhhhhhcCCCCc
Q psy5338 32 GKKGNIRALLCSLHTILWEGAKW 54 (76)
Q Consensus 32 ~ke~n~R~LL~~l~~vLw~~~~w 54 (76)
-.+.++-.+|..|.+.+|||-.|
T Consensus 35 ~se~~v~~~i~~l~~~lwP~g~~ 57 (113)
T PF08628_consen 35 TSEEQVARYIQLLRESLWPNGKL 57 (113)
T ss_pred cCHHHHHHHHHHHHHhhCCCCCC
Confidence 46777889999999999998877
No 81
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=36.11 E-value=29 Score=20.33 Aligned_cols=24 Identities=29% Similarity=0.218 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCC
Q psy5338 2 SQLVTPADVKKSYRKACLAVHPDK 25 (76)
Q Consensus 2 ~~~at~~eikkayr~~a~~~hPDK 25 (76)
++++|..++|+++.+....+.|.+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~R 43 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNR 43 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcce
Confidence 467999999999887766666665
No 82
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=36.04 E-value=71 Score=20.34 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhc
Q psy5338 10 VKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 10 ikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw 49 (76)
|+|.-.-.++..+|| +..|.+.....+...|..|+..|=
T Consensus 8 ~~~~~~~~~~~~~~~-~~~~i~~~~~~l~~~l~~LE~~L~ 46 (111)
T cd03204 8 IAKQKKLKSKLLDHD-NVEYLKKILDELEMVLDQVEQELQ 46 (111)
T ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445445567778898 777778888899999999999884
No 83
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=33.20 E-value=44 Score=20.38 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.0
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKAC 18 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a 18 (76)
++++||-.|||+|.+++-
T Consensus 21 V~~~anK~eIK~avE~lf 38 (77)
T TIGR03636 21 VDRKATKGDIKRAVEKLF 38 (77)
T ss_pred ECCCCCHHHHHHHHHHHh
Confidence 467899999999988874
No 84
>CHL00030 rpl23 ribosomal protein L23
Probab=33.18 E-value=43 Score=21.15 Aligned_cols=26 Identities=12% Similarity=-0.013 Sum_probs=18.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKIL 27 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~ 27 (76)
+.++||-.|||+|.+++- ...+.+++
T Consensus 26 V~~~anK~eIK~avE~lf-~VkV~~VN 51 (93)
T CHL00030 26 VDSGSTKTEIKHWIELFF-GVKVIAVN 51 (93)
T ss_pred ECCCCCHHHHHHHHHHHh-CCeEEEEE
Confidence 467899999999998775 34454443
No 85
>KOG0718|consensus
Probab=31.32 E-value=50 Score=27.17 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhC
Q psy5338 2 SQLVTPADVKKSYRKACLAVH 22 (76)
Q Consensus 2 ~~~at~~eikkayr~~a~~~h 22 (76)
.+..|++|||.-|+++.+.-+
T Consensus 91 ~r~~tpeEIreE~Erl~r~~d 111 (546)
T KOG0718|consen 91 FRGKTPEEIREEYERLQRERD 111 (546)
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999998876543
No 86
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=30.69 E-value=31 Score=22.90 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=17.4
Q ss_pred cccccccCCchh-HHHHHHhhc
Q psy5338 55 KCEMSQLVTPAD-VKKSYRKAC 75 (76)
Q Consensus 55 ~v~~~~l~~~~~-vK~~y~ka~ 75 (76)
=.++.+|+.+.. .|.+|.+||
T Consensus 188 l~PI~~li~~~~~k~~~l~~ai 209 (212)
T PF01823_consen 188 LQPIYDLIPDNPFKKENLKKAI 209 (212)
T ss_dssp EEEGGGGGCTTTTHHHHHHHHH
T ss_pred eEEHHHHcCCcHHHHHHHHHHH
Confidence 457889999988 888888886
No 87
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=30.45 E-value=59 Score=15.77 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=23.2
Q ss_pred chhchHHHHHHHHHhhhhhhcCCCCc-ccccccc-CCchhHHHHHHh
Q psy5338 29 WTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQL-VTPADVKKSYRK 73 (76)
Q Consensus 29 W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l-~~~~~vK~~y~k 73 (76)
|++.....|..++..+.. ..| .|+-.-- =++.+|+..|..
T Consensus 2 Wt~eE~~~l~~~~~~~g~-----~~w~~Ia~~~~~rs~~~~~~~~~~ 43 (45)
T cd00167 2 WTEEEDELLLEAVKKYGK-----NNWEKIAKELPGRTPKQCRERWRN 43 (45)
T ss_pred CCHHHHHHHHHHHHHHCc-----CCHHHHHhHcCCCCHHHHHHHHHH
Confidence 666666667766666643 456 4432221 356777777754
No 88
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=30.13 E-value=37 Score=18.14 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=6.4
Q ss_pred HHHHHHHHHhhh
Q psy5338 34 KGNIRALLCSLH 45 (76)
Q Consensus 34 e~n~R~LL~~l~ 45 (76)
...|++||....
T Consensus 3 ~~~F~~lL~e~~ 14 (51)
T PF01846_consen 3 REAFKELLKEHK 14 (51)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 345555555554
No 89
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=29.85 E-value=47 Score=19.22 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=25.9
Q ss_pred ccchhchHHHHHHHHHhhhhhhcCCCCc----cccccccCC
Q psy5338 27 LEWTEGKKGNIRALLCSLHTILWEGAKW----KCEMSQLVT 63 (76)
Q Consensus 27 ~~W~e~ke~n~R~LL~~l~~vLw~~~~w----~v~~~~l~~ 63 (76)
.++.+.....++..+..|+..| .+..| .+|+.|+..
T Consensus 38 ~~~~~~~~~~~~~~l~~le~~L-~~~~~l~g~~~slaDi~~ 77 (105)
T cd03179 38 AEVLAFLRERGHAALAVLEAHL-AGRDFLVGDALTIADIAL 77 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-ccCccccCCCCCHHHHHH
Confidence 3455567777888888898888 55555 778888653
No 90
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=28.50 E-value=54 Score=20.92 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=17.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKI 26 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi 26 (76)
+.++||-.|||+|.+++-- .-|.++
T Consensus 28 V~~~AtK~~IK~AvE~lF~-VkV~kV 52 (94)
T COG0089 28 VDPDATKPEIKAAVEELFG-VKVEKV 52 (94)
T ss_pred ECCCCCHHHHHHHHHHHhC-CeEEEE
Confidence 3678999999999887754 334443
No 91
>PF13340 DUF4096: Putative transposase of IS4/5 family (DUF4096)
Probab=28.42 E-value=55 Score=19.06 Aligned_cols=40 Identities=18% Similarity=0.404 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhhhhhhcCCCCc-cccccccCCchhHHHHHHh
Q psy5338 33 KKGNIRALLCSLHTILWEGAKW-KCEMSQLVTPADVKKSYRK 73 (76)
Q Consensus 33 ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l~~~~~vK~~y~k 73 (76)
...+.|.+++.+--|+-.|+.| .++ .+.-....|-..|++
T Consensus 23 ~~~~~R~v~~ail~~lrtG~~Wr~LP-~~fg~~~tv~~~f~r 63 (75)
T PF13340_consen 23 PRIDLREVLNAILYVLRTGCPWRDLP-EDFGPWSTVYRRFRR 63 (75)
T ss_pred CccchHHHHhcccccceecceecccc-hhccCcCcHHHHHHH
Confidence 4557999999999999999999 766 555555667666653
No 92
>PTZ00448 hypothetical protein; Provisional
Probab=27.69 E-value=20 Score=28.19 Aligned_cols=44 Identities=20% Similarity=0.412 Sum_probs=31.4
Q ss_pred hCCCCcccchhchHHHHHHHHHhhhhhhcCCCCc-cccccccCCchhHHHHH
Q psy5338 21 VHPDKILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQLVTPADVKKSY 71 (76)
Q Consensus 21 ~hPDKi~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l~~~~~vK~~y 71 (76)
++|+|+.+|.+|.+.++-. ||--+.=| .+|=++.-.+..+++++
T Consensus 31 cypnkv~~~R~G~e~dlde-------VLq~~~VF~NvsKG~~A~~edL~kaF 75 (373)
T PTZ00448 31 CYKNKILNWRSGVEWDLDE-------VLQIRTIFANVSKGQLANSDDLNTVF 75 (373)
T ss_pred ECccHHHHHHcCCCCCHHH-------HhhhhheeecccccccCCHHHHHHHh
Confidence 5799999999998877754 44444445 67777777777777665
No 93
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=27.54 E-value=49 Score=25.14 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=27.2
Q ss_pred HHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhc
Q psy5338 15 RKACLAVHPDKILEWTEGKKGNIRALLCSLHTILW 49 (76)
Q Consensus 15 r~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw 49 (76)
-+++..+.|-.++.|. ...+|+.||.++..+|.
T Consensus 199 ~QLa~RF~~~~Lp~W~--~d~ef~~LL~s~e~~LP 231 (302)
T PF05621_consen 199 PQLASRFEPFELPRWE--LDEEFRRLLASFERALP 231 (302)
T ss_pred HHHHhccCCccCCCCC--CCcHHHHHHHHHHHhCC
Confidence 4677788888899994 45689999999999985
No 94
>PF12399 BCA_ABC_TP_C: Branched-chain amino acid ATP-binding cassette transporter
Probab=27.14 E-value=22 Score=17.07 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=11.7
Q ss_pred cccccCCchhHHHHHH
Q psy5338 57 EMSQLVTPADVKKSYR 72 (76)
Q Consensus 57 ~~~~l~~~~~vK~~y~ 72 (76)
+..+++.+.+|+.+|.
T Consensus 7 ~p~~i~~n~~V~~aYL 22 (23)
T PF12399_consen 7 TPEEIRANPEVREAYL 22 (23)
T ss_pred CHHHHhcCHHHHHhhC
Confidence 3456777888888884
No 95
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=26.70 E-value=65 Score=19.96 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=15.1
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKAC 18 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a 18 (76)
+++.||-.|||+|.+++-
T Consensus 28 V~~~anK~eIK~AvE~lf 45 (84)
T PRK14548 28 VDRRATKPDIKRAVEELF 45 (84)
T ss_pred ECCCCCHHHHHHHHHHHh
Confidence 367899999999998875
No 96
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=26.57 E-value=1.1e+02 Score=18.74 Aligned_cols=51 Identities=16% Similarity=0.307 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhhcCCCCc----cccccccC
Q psy5338 8 ADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILWEGAKW----KCEMSQLV 62 (76)
Q Consensus 8 ~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vLw~~~~w----~v~~~~l~ 62 (76)
++|...|..... -|++ ....+.....+...+..|++.| .+.+| .+|+.|++
T Consensus 14 ~d~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~~le~~L-~~~~~l~G~~~T~aDi~ 68 (121)
T cd03209 14 MDLRMGLARICY--SPDF-EKLKPDYLAKLPDKLKLFSDFL-GDRPWFAGDKITYVDFL 68 (121)
T ss_pred HHHHHHHHHhhc--Ccch-HHHHHHHHHHHHHHHHHHHHHh-CCCCCcCCCCccHHHHH
Confidence 455555554433 2332 2233456677888999999988 44466 68888864
No 97
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=26.37 E-value=66 Score=19.99 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=14.7
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKAC 18 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a 18 (76)
++++||-.|||+|.+++-
T Consensus 27 V~~~a~K~eIK~aie~lf 44 (92)
T PRK05738 27 VAPDATKPEIKAAVEKLF 44 (92)
T ss_pred ECCCCCHHHHHHHHHHHc
Confidence 367899999999888764
No 98
>PHA02939 hypothetical protein; Provisional
Probab=26.33 E-value=1.8e+02 Score=19.80 Aligned_cols=42 Identities=14% Similarity=0.138 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhhh
Q psy5338 7 PADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTIL 48 (76)
Q Consensus 7 ~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~vL 48 (76)
+++|=++-+-..+.++|.--++-.+.++.++..||.-++.+.
T Consensus 67 pe~iW~vRkaV~~l~DP~st~~qrEyae~~l~~lle~~~r~f 108 (144)
T PHA02939 67 PEEIWYVRKAVKELYDPESTDDQREYAEHRLKGLLELLERNF 108 (144)
T ss_pred hHHHHHHHHHHHHHhCCccchhHHHHHHhhHHHHHHHHHHHH
Confidence 455555556667788997655556789999999999886543
No 99
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=25.37 E-value=50 Score=17.51 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcc-------cc--hh-chHHHHHHHHHhhhhhhcCC
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKIL-------EW--TE-GKKGNIRALLCSLHTILWEG 51 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~-------~W--~e-~ke~n~R~LL~~l~~vLw~~ 51 (76)
|+.+.|.++|++.+.+.-...+-.-.. .+ .+ .........+..|+...+.|
T Consensus 6 lp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 6 LPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp ETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 467889999998887744432221111 01 11 35666677777776655543
No 100
>PF14027 DUF4243: Protein of unknown function (DUF4243)
Probab=25.05 E-value=59 Score=23.96 Aligned_cols=45 Identities=20% Similarity=0.405 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHHHHHHhCC----------CCc--ccchh--chHHHHHHHHHhhhhhh
Q psy5338 4 LVTPADVKKSYRKACLAVHP----------DKI--LEWTE--GKKGNIRALLCSLHTIL 48 (76)
Q Consensus 4 ~at~~eikkayr~~a~~~hP----------DKi--~~W~e--~ke~n~R~LL~~l~~vL 48 (76)
.||+++|+++|...+...-| +.+ .+|.+ |+....+..|.=.++-+
T Consensus 17 GA~~~~l~~~yd~~~~~~~p~~~~~~~~~~~~i~~~~w~~~LG~~~~y~~yl~fF~~ei 75 (329)
T PF14027_consen 17 GASPEQLQAAYDRYAKYQRPWHPADPPKSPELITEENWRDHLGDREYYRAYLDFFEDEI 75 (329)
T ss_pred CCCHHHHHHHHHhCccccCCCCCCCcccccccCCHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 68999999999777765542 223 34654 77777777777666555
No 101
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=24.47 E-value=61 Score=22.35 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHHHHH
Q psy5338 4 LVTPADVKKSYRKACL 19 (76)
Q Consensus 4 ~at~~eikkayr~~a~ 19 (76)
.-|.++||.||.+.-.
T Consensus 73 ~ysE~dik~AYe~A~~ 88 (159)
T PF05384_consen 73 RYSEEDIKEAYEEAHE 88 (159)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 3489999999987543
No 102
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=23.43 E-value=87 Score=17.87 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=24.4
Q ss_pred chhchHHHHHHHHHhhhhhhcCCCCc--cccccccC-----CchhHHHHHHhh
Q psy5338 29 WTEGKKGNIRALLCSLHTILWEGAKW--KCEMSQLV-----TPADVKKSYRKA 74 (76)
Q Consensus 29 W~e~ke~n~R~LL~~l~~vLw~~~~w--~v~~~~l~-----~~~~vK~~y~ka 74 (76)
|.+.....|-.-+..+. +.+| |-.+.++| ++.||+..+.|-
T Consensus 6 WT~eeh~~Fl~ai~~~G-----~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy 53 (57)
T TIGR01557 6 WTEDLHDRFLQAVQKLG-----GPDWATPKRILELMVVDGLTRDQVASHLQKY 53 (57)
T ss_pred CCHHHHHHHHHHHHHhC-----CCcccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 66555555544444442 1267 66666654 567898888763
No 103
>KOG1957|consensus
Probab=22.52 E-value=81 Score=25.95 Aligned_cols=39 Identities=28% Similarity=0.358 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCcccch--hchHHHHHHHHHhh
Q psy5338 3 QLVTPADVKKSYRKACLAVHPDKILEWT--EGKKGNIRALLCSL 44 (76)
Q Consensus 3 ~~at~~eikkayr~~a~~~hPDKi~~W~--e~ke~n~R~LL~~l 44 (76)
+..|+.+|++|-+.+ -+||.+..-+ .+.|=++|-|.++|
T Consensus 146 saitekdi~~am~~l---g~p~~nea~svdarqeldlrilds~~ 186 (555)
T KOG1957|consen 146 SAITEKDIKKAMRNL---GEPDQNEALSVDARQELDLRILDSSL 186 (555)
T ss_pred ccccHHHHHHHHHhc---CCCCcchhcccchhhhhhhhhhhhcc
Confidence 357999999987665 5777665433 36677788888876
No 104
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=21.65 E-value=1.4e+02 Score=17.55 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=25.5
Q ss_pred ccchhchHHHHHHHHHhhhhhhcCCCCc----cccccccCC
Q psy5338 27 LEWTEGKKGNIRALLCSLHTILWEGAKW----KCEMSQLVT 63 (76)
Q Consensus 27 ~~W~e~ke~n~R~LL~~l~~vLw~~~~w----~v~~~~l~~ 63 (76)
+.+.+.....+...+..+++.| .+..| ++|+.|++.
T Consensus 35 ~~~~~~~~~~~~~~l~~le~~L-~~~~~l~G~~~t~aDi~l 74 (113)
T cd03178 35 PYAIERYTNEAKRLYGVLDKRL-AGRDYLAGDEYSIADIAI 74 (113)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-ccCCcccCCCCCeeeeeH
Confidence 3344456677888888888888 45555 788888764
No 105
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=20.75 E-value=74 Score=18.71 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=17.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCC
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPD 24 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPD 24 (76)
+++++|..++|....+.. .+.|+
T Consensus 18 v~~~~TV~~LK~~I~~~~-~~~~~ 40 (73)
T cd01791 18 CNPDDTIGDLKKLIAAQT-GTRPE 40 (73)
T ss_pred eCCCCcHHHHHHHHHHHh-CCChH
Confidence 467899999999877665 46776
No 106
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=20.54 E-value=61 Score=17.09 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=22.1
Q ss_pred cchhchHHHHHHHHHhhhhhhcCCCCc-ccccccc--CCchhHHHHHHh
Q psy5338 28 EWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQL--VTPADVKKSYRK 73 (76)
Q Consensus 28 ~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l--~~~~~vK~~y~k 73 (76)
.|++.+...|..++..+..= +| .|+-.-- =++.|++..|++
T Consensus 3 ~Wt~eE~~~l~~~v~~~g~~-----~W~~Ia~~~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 3 PWTEEEDEKLLEAVKKYGKD-----NWKKIAKRMPGGRTAKQCRSRYQN 46 (48)
T ss_dssp SS-HHHHHHHHHHHHHSTTT-----HHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCc-----HHHHHHHHcCCCCCHHHHHHHHHh
Confidence 46666666666666654322 36 5443322 355777777765
No 107
>PHA00743 helix-turn-helix protein
Probab=20.19 E-value=85 Score=18.09 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhhhh
Q psy5338 35 GNIRALLCSLHTIL 48 (76)
Q Consensus 35 ~n~R~LL~~l~~vL 48 (76)
.++|.|||-.|+|=
T Consensus 6 ~~iReLLs~iheIK 19 (51)
T PHA00743 6 EDVRELLSIIHEIK 19 (51)
T ss_pred HHHHHHHHHHHHHh
Confidence 56999999999875
Done!