Query psy5338
Match_columns 76
No_of_seqs 119 out of 1097
Neff 5.4
Searched_HMMs 29240
Date Sat Aug 17 00:01:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qwo_B Putative tyrosine-prote 99.5 2.8E-15 9.6E-20 94.3 1.6 52 25-76 6-59 (92)
2 1n4c_A Auxilin; four helix bun 99.3 1.3E-12 4.5E-17 90.6 3.1 71 4-76 69-143 (182)
3 3ag7_A Putative uncharacterize 99.1 1.6E-11 5.5E-16 78.2 1.2 53 24-76 13-66 (106)
4 1iur_A KIAA0730 protein; DNAJ 99.0 6.1E-10 2.1E-14 68.8 4.8 47 1-47 24-70 (88)
5 2qwo_B Putative tyrosine-prote 99.0 2.1E-10 7.3E-15 71.9 2.7 44 1-44 41-86 (92)
6 2ys8_A RAB-related GTP-binding 99.0 1.4E-09 4.6E-14 66.8 6.0 45 1-47 35-79 (90)
7 2ej7_A HCG3 gene; HCG3 protein 98.9 3.5E-09 1.2E-13 63.2 5.1 45 1-45 17-61 (82)
8 2dmx_A DNAJ homolog subfamily 98.8 4.3E-09 1.5E-13 64.3 5.2 44 1-44 17-60 (92)
9 2cug_A Mkiaa0962 protein; DNAJ 98.8 7.2E-09 2.5E-13 63.0 5.8 43 1-45 25-67 (88)
10 2ctr_A DNAJ homolog subfamily 98.8 7.3E-09 2.5E-13 63.0 5.8 43 1-45 15-57 (88)
11 1hdj_A Human HSP40, HDJ-1; mol 98.8 7.6E-09 2.6E-13 61.2 5.6 43 1-45 11-53 (77)
12 2lgw_A DNAJ homolog subfamily 98.8 1.1E-08 3.6E-13 64.0 5.7 44 1-44 10-53 (99)
13 2dn9_A DNAJ homolog subfamily 98.8 1.4E-08 4.8E-13 60.2 5.9 43 1-44 15-57 (79)
14 2ctp_A DNAJ homolog subfamily 98.8 8.6E-09 3E-13 61.1 4.9 43 1-45 15-57 (78)
15 2yua_A Williams-beuren syndrom 98.7 1.5E-08 5.2E-13 62.8 5.5 43 1-44 25-67 (99)
16 2ctw_A DNAJ homolog subfamily 98.7 2.2E-08 7.6E-13 63.2 5.7 43 1-44 25-67 (109)
17 2ctq_A DNAJ homolog subfamily 98.7 2.4E-08 8.3E-13 63.2 5.5 43 1-44 28-70 (112)
18 2och_A Hypothetical protein DN 98.7 3.2E-08 1.1E-12 58.0 5.6 40 1-44 16-55 (73)
19 1wjz_A 1700030A21RIK protein; 98.7 1E-08 3.5E-13 62.5 3.5 45 1-45 24-73 (94)
20 1faf_A Large T antigen; J doma 98.7 2.2E-08 7.6E-13 60.3 4.7 39 1-44 19-59 (79)
21 2o37_A Protein SIS1; HSP40, J- 98.7 3.8E-08 1.3E-12 60.3 5.7 40 1-44 16-55 (92)
22 3apq_A DNAJ homolog subfamily 98.6 4E-08 1.4E-12 65.7 5.4 42 1-43 10-51 (210)
23 3ag7_A Putative uncharacterize 98.6 1.2E-08 4.3E-13 64.8 2.5 44 4-48 51-100 (106)
24 2guz_A Mitochondrial import in 98.6 5.6E-08 1.9E-12 57.3 5.0 40 1-45 22-62 (71)
25 1bq0_A DNAJ, HSP40; chaperone, 98.6 4.4E-08 1.5E-12 61.0 4.5 43 1-44 11-53 (103)
26 1n4c_A Auxilin; four helix bun 98.5 5.7E-08 2E-12 67.2 3.9 44 1-44 125-170 (182)
27 2qsa_A DNAJ homolog DNJ-2; J-d 98.5 6.2E-08 2.1E-12 60.8 3.7 44 1-44 23-69 (109)
28 1gh6_A Large T antigen; tumor 98.5 5.7E-08 1.9E-12 62.4 2.2 28 1-28 16-45 (114)
29 2l6l_A DNAJ homolog subfamily 98.4 3.3E-07 1.1E-11 60.4 5.7 29 1-29 18-46 (155)
30 3lz8_A Putative chaperone DNAJ 98.3 6.3E-08 2.1E-12 71.4 0.0 42 1-44 36-77 (329)
31 1fpo_A HSC20, chaperone protei 98.2 1.6E-06 5.4E-11 58.7 5.0 29 1-29 9-39 (171)
32 2pf4_E Small T antigen; PP2A, 98.2 1.1E-06 3.6E-11 60.4 3.8 43 1-43 19-64 (174)
33 3hho_A CO-chaperone protein HS 98.2 2.5E-06 8.6E-11 57.8 5.3 29 1-29 12-42 (174)
34 3bvo_A CO-chaperone protein HS 98.1 3.6E-06 1.2E-10 58.7 5.1 26 4-29 56-81 (207)
35 3uo3_A J-type CO-chaperone JAC 98.1 1.3E-06 4.4E-11 59.8 2.7 26 3-28 28-53 (181)
36 3apo_A DNAJ homolog subfamily 98.0 1.4E-06 4.8E-11 67.8 0.7 39 1-40 29-67 (780)
37 2guz_B Mitochondrial import in 97.6 2.7E-05 9.2E-10 45.7 2.5 22 5-26 19-40 (65)
38 2y4t_A DNAJ homolog subfamily 96.4 0.0035 1.2E-07 43.3 4.0 42 2-43 391-434 (450)
39 1gv2_A C-MYB, MYB proto-oncoge 85.2 2.2 7.5E-05 25.5 5.1 63 3-75 35-101 (105)
40 1h8a_C AMV V-MYB, MYB transfor 80.0 5.5 0.00019 24.6 5.6 63 3-75 58-124 (128)
41 1h89_C C-MYB, MYB proto-oncoge 72.5 8 0.00027 24.7 5.0 63 3-75 89-155 (159)
42 2k9n_A MYB24; R2R3 domain, DNA 71.1 8.7 0.0003 23.0 4.7 61 4-74 33-97 (107)
43 3osg_A MYB21; transcription-DN 61.6 23 0.00077 21.8 5.3 60 4-74 42-106 (126)
44 3zqc_A MYB3; transcription-DNA 60.1 27 0.00094 21.5 5.8 61 4-74 34-98 (131)
45 2din_A Cell division cycle 5-l 54.1 6.7 0.00023 21.6 1.7 46 21-74 3-52 (66)
46 1qqr_A Streptokinase domain B; 40.1 17 0.00058 24.0 2.2 24 1-24 40-63 (138)
47 2pzi_A Probable serine/threoni 38.5 13 0.00046 28.2 1.7 17 8-24 646-662 (681)
48 2cu7_A KIAA1915 protein; nucle 35.8 24 0.0008 19.7 2.1 46 22-74 4-53 (72)
49 3kp1_E D-ornithine aminomutase 31.6 42 0.0014 21.6 3.0 20 3-22 15-34 (121)
50 3s6n_M SurviVal motor neuron p 30.9 19 0.00065 18.7 1.0 17 59-75 6-22 (37)
51 2lxi_A RNA-binding protein 10; 29.4 42 0.0014 18.8 2.5 18 1-18 9-26 (91)
52 2llk_A Cyclin-D-binding MYB-li 28.3 33 0.0011 19.7 1.9 50 18-73 14-65 (73)
53 1guu_A C-MYB, MYB proto-oncoge 26.5 56 0.0019 16.7 2.5 43 27-75 4-49 (52)
54 2elk_A SPCC24B10.08C protein; 26.2 62 0.0021 17.2 2.7 47 23-74 6-55 (58)
55 1vq8_S 50S ribosomal protein L 26.0 43 0.0015 19.9 2.2 18 1-18 29-46 (85)
56 2eqr_A N-COR1, N-COR, nuclear 25.0 54 0.0018 17.7 2.3 42 24-72 10-54 (61)
57 1iqt_A AUF1, heterogeneous nuc 24.7 61 0.0021 16.8 2.5 17 1-17 7-23 (75)
58 2zjr_Q 50S ribosomal protein L 24.5 46 0.0016 20.1 2.2 18 1-18 29-46 (95)
59 3r8s_T 50S ribosomal protein L 24.2 48 0.0017 20.0 2.2 18 1-18 34-51 (93)
60 3j21_T 50S ribosomal protein L 23.8 50 0.0017 19.7 2.2 18 1-18 30-47 (86)
61 3tve_T 50S ribosomal protein L 22.4 55 0.0019 19.7 2.2 18 1-18 28-45 (92)
62 2d9a_A B-MYB, MYB-related prot 20.3 1E+02 0.0035 16.2 2.8 48 23-75 4-54 (60)
No 1
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.51 E-value=2.8e-15 Score=94.31 Aligned_cols=52 Identities=63% Similarity=1.105 Sum_probs=49.5
Q ss_pred CcccchhchHHHHHHHHHhhhhhhcCC-CCc-cccccccCCchhHHHHHHhhcC
Q psy5338 25 KILEWTEGKKGNIRALLCSLHTILWEG-AKW-KCEMSQLVTPADVKKSYRKACT 76 (76)
Q Consensus 25 Ki~~W~e~ke~n~R~LL~~l~~vLw~~-~~w-~v~~~~l~~~~~vK~~y~ka~~ 76 (76)
||..|++|+++|+|+||++|+.|||+| +.| .++++...++.+||++|||+.+
T Consensus 6 ~i~~W~~gk~~~ir~lL~~l~~~L~~~~~~y~~Lgv~~~as~~eIKkAYRklal 59 (92)
T 2qwo_B 6 KILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVL 59 (92)
T ss_dssp HHHHHHHHHTTCHHHHHHHGGGTSCTTCCSCCCCCGGGSSSHHHHHHHHHHHHH
T ss_pred HHHHHHccChhHHHHHHHHHHHHhcccccCCeecCCCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999999997 899 9999999999999999999863
No 2
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.28 E-value=1.3e-12 Score=90.61 Aligned_cols=71 Identities=52% Similarity=0.903 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCC--CcccchhchHHHHHHHHHhhhhhhcCC-CCc-cccccccCCchhHHHHHHhhcC
Q psy5338 4 LVTPADVKKSYRKACLAVHPD--KILEWTEGKKGNIRALLCSLHTILWEG-AKW-KCEMSQLVTPADVKKSYRKACT 76 (76)
Q Consensus 4 ~at~~eikkayr~~a~~~hPD--Ki~~W~e~ke~n~R~LL~~l~~vLw~~-~~w-~v~~~~l~~~~~vK~~y~ka~~ 76 (76)
..|.+++++ .++|+..+|. ++.+|.+++++|||+||++|+.|||++ ..| -+++....++.+||++|||+++
T Consensus 69 ~~~~~~~r~--~~~a~~~D~l~~~i~~W~~gk~~niRaLLssl~~vl~~~~d~Y~vLgv~~~As~~eIKkAYRklal 143 (182)
T 1n4c_A 69 PRTIAEMRK--EEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVL 143 (182)
T ss_dssp CCCTHHHHH--HHHHTCCCTTTHHHHHHHHHHTTCHHHHHHHGGGGSCTTCCCCCCCCGGGGSSHHHHHHHHHHHHH
T ss_pred cchHHHHHH--HHHHHhccHHHHHHHHHHcccHHHHHHHHHHHHHHhcCccchhhcCCCCCCCCHHHHHHHHHHHHH
Confidence 457899999 6669999997 788999999999999999999999996 577 9999999999999999999863
No 3
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.10 E-value=1.6e-11 Score=78.25 Aligned_cols=53 Identities=42% Similarity=0.854 Sum_probs=49.0
Q ss_pred CCcccchhchHHHHHHHHHhhhhhhcCCCCc-cccccccCCchhHHHHHHhhcC
Q psy5338 24 DKILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQLVTPADVKKSYRKACT 76 (76)
Q Consensus 24 DKi~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l~~~~~vK~~y~ka~~ 76 (76)
+++..|++++++|+|+||++++.++|++.+| .|...+..++.+||++|||+.+
T Consensus 13 ~~i~~W~~~~~~~ir~lL~~l~~~l~~~~d~Y~vl~~~~As~~eIKkAYRklal 66 (106)
T 3ag7_A 13 AKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALL 66 (106)
T ss_dssp HHHHHHHTTTTTCHHHHHTTGGGTSCTTSCCCCCCGGGSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhcccCCHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999 9988888889999999999863
No 4
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=98.98 E-value=6.1e-10 Score=68.82 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTI 47 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~v 47 (76)
|+++||.+|||+|||++|+.+||||+.+-.+.++..|..|...++.+
T Consensus 24 v~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL 70 (88)
T 1iur_A 24 QAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL 70 (88)
T ss_dssp HTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999998764445667777776665543
No 5
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=98.97 E-value=2.1e-10 Score=71.90 Aligned_cols=44 Identities=43% Similarity=0.414 Sum_probs=34.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchh--chHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTE--GKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e--~ke~n~R~LL~~l 44 (76)
|+++||++|||||||++|+.+||||+++-.. .++..|..+-..+
T Consensus 41 v~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAy 86 (92)
T 2qwo_B 41 MADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAW 86 (92)
T ss_dssp GGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHH
Confidence 4678999999999999999999999985321 2555676665544
No 6
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=1.4e-09 Score=66.81 Aligned_cols=45 Identities=24% Similarity=0.485 Sum_probs=36.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTI 47 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~~v 47 (76)
|+++||.+|||+|||++++.+||||+.. ++....|+.|...++.+
T Consensus 35 v~~~as~~eIk~aYr~la~~~HPDk~~~--~~~~~~f~~i~~Ay~~L 79 (90)
T 2ys8_A 35 VKPGASRDEVNKAYRKLAVLLHPDKCVA--PGSEDAFKAVVNARTAL 79 (90)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHCTTTCCC--TTHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999874 46667777776665443
No 7
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=3.5e-09 Score=63.23 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLH 45 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~ 45 (76)
|++++|.+|||+|||++++.+||||+..-.+.++..|+.|...++
T Consensus 17 v~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~ 61 (82)
T 2ej7_A 17 VPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYE 61 (82)
T ss_dssp CCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999987543445556666555544
No 8
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=4.3e-09 Score=64.29 Aligned_cols=44 Identities=30% Similarity=0.448 Sum_probs=34.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|++++|.+|||+|||++++.+||||+..-.+.++..|+.|...+
T Consensus 17 v~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay 60 (92)
T 2dmx_A 17 VQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAY 60 (92)
T ss_dssp CCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998754344555666655544
No 9
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=98.83 E-value=7.2e-09 Score=63.00 Aligned_cols=43 Identities=28% Similarity=0.433 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLH 45 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~ 45 (76)
|+++||.+|||+|||++++.+||||+.. +..+..|+.|...++
T Consensus 25 v~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~~~f~~i~~Ay~ 67 (88)
T 2cug_A 25 VSRTASQADIKKAYKKLAREWHPDKNKD--PGAEDRFIQISKAYE 67 (88)
T ss_dssp CCTTCCHHHHHHHHHHHHHHSCTTTCCS--TTHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHH
Confidence 5789999999999999999999999874 455666666555443
No 10
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=7.3e-09 Score=62.98 Aligned_cols=43 Identities=19% Similarity=0.377 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLH 45 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~ 45 (76)
|+++||.+|||+|||++++.+||||+. .+.++..|+.|...++
T Consensus 15 v~~~as~~eIk~ayr~l~~~~HPDk~~--~~~a~~~f~~i~~Ay~ 57 (88)
T 2ctr_A 15 VPKSASERQIKKAFHKLAMKYHPDKNK--SPDAEAKFREIAEAYE 57 (88)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTCTTTCC--SHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHCcCCCC--ChHHHHHHHHHHHHHH
Confidence 578999999999999999999999987 3445556666555443
No 11
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=98.82 E-value=7.6e-09 Score=61.23 Aligned_cols=43 Identities=23% Similarity=0.492 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLH 45 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~ 45 (76)
|+++||.++||+|||++++.+||||+.. ++....|+.|...++
T Consensus 11 v~~~as~~~Ik~ayr~l~~~~HPD~~~~--~~~~~~f~~i~~Ay~ 53 (77)
T 1hdj_A 11 LARGASDEEIKRAYRRQALRYHPDKNKE--PGAEEKFKEIAEAYD 53 (77)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCTTTCCC--TTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHH
Confidence 5789999999999999999999999874 455666666655543
No 12
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=98.79 E-value=1.1e-08 Score=63.99 Aligned_cols=44 Identities=25% Similarity=0.393 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|+++||.+|||+|||++++.+||||+..-.+.++..|+.|...+
T Consensus 10 v~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY 53 (99)
T 2lgw_A 10 VPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAY 53 (99)
T ss_dssp SCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998754334555666655544
No 13
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=1.4e-08 Score=60.23 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|++++|.++||+|||++++.+||||+..- +.+...|+.|...+
T Consensus 15 v~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~a~~~f~~i~~Ay 57 (79)
T 2dn9_A 15 VPRNASQKEIKKAYYQLAKKYHPDTNKDD-PKAKEKFSQLAEAY 57 (79)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTCTTTCSSC-TTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCC-HHHHHHHHHHHHHH
Confidence 57899999999999999999999998742 34555565555444
No 14
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=8.6e-09 Score=61.11 Aligned_cols=43 Identities=30% Similarity=0.465 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLH 45 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~ 45 (76)
|++++|.+|||+|||++++.+||||+.. ++....|+.|...++
T Consensus 15 v~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~~~~f~~i~~Ay~ 57 (78)
T 2ctp_A 15 VSRGASDEDLKKAYRRLALKFHPDKNHA--PGATEAFKAIGTAYA 57 (78)
T ss_dssp CCTTCCHHHHHHHHHHHHTTSCTTTCSS--HHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHH
Confidence 5789999999999999999999999873 455666666555543
No 15
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1.5e-08 Score=62.81 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=33.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|+++||.+|||+|||++++.+||||+..- +.+...|+.|...+
T Consensus 25 v~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay 67 (99)
T 2yua_A 25 VPSTATQAQIKAAYYRQCFLYHPDRNSGS-AEAAERFTRISQAY 67 (99)
T ss_dssp CCTTCCHHHHHHHHHHHHHHSCTTTCSSC-SHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCC-HHHHHHHHHHHHHH
Confidence 57899999999999999999999998642 33455566555544
No 16
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.72 E-value=2.2e-08 Score=63.19 Aligned_cols=43 Identities=30% Similarity=0.417 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|+++||.+|||+|||++++.+||||+..- +.+...|+.|...+
T Consensus 25 v~~~as~~eIk~aYr~la~~~HPDk~~~~-~~a~~~f~~i~~Ay 67 (109)
T 2ctw_A 25 LDKNATSDDIKKSYRKLALKYHPDKNPDN-PEAADKFKEINNAH 67 (109)
T ss_dssp CCTTCCHHHHHHHHHHHHHHSCTTTSTTC-HHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHH
Confidence 57899999999999999999999998742 33445555544443
No 17
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=2.4e-08 Score=63.19 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|+++||.+|||+|||++++.+||||+..- +.++..|+.|...+
T Consensus 28 v~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay 70 (112)
T 2ctq_A 28 CDELSSVEQILAEFKVRALECHPDKHPEN-PKAVETFQKLQKAK 70 (112)
T ss_dssp CCTTSCHHHHHHHHHHHHHTTCTTTCTTC-STHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHH
Confidence 57899999999999999999999998742 34555565554443
No 18
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=98.70 E-value=3.2e-08 Score=58.03 Aligned_cols=40 Identities=25% Similarity=0.415 Sum_probs=31.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|++++|.++||+|||++++.+||||+.+ ....|+.|...+
T Consensus 16 l~~~a~~~eIk~ayr~l~~~~HPD~~~~----~~~~f~~i~~Ay 55 (73)
T 2och_A 16 VKPDASDNELKKAYRKMALKFHPDKNPD----GAEQFKQISQAY 55 (73)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTCTTTCTT----CHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCcC----HHHHHHHHHHHH
Confidence 5789999999999999999999999863 234555554443
No 19
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=98.70 E-value=1e-08 Score=62.45 Aligned_cols=45 Identities=22% Similarity=0.195 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccc-----hhchHHHHHHHHHhhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEW-----TEGKKGNIRALLCSLH 45 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W-----~e~ke~n~R~LL~~l~ 45 (76)
|+++||.+|||+|||++++.+||||+..- .+.....|+.|...++
T Consensus 24 v~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~ 73 (94)
T 1wjz_A 24 ADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWK 73 (94)
T ss_dssp CCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998631 1345555665555443
No 20
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=98.69 E-value=2.2e-08 Score=60.26 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=30.5
Q ss_pred CCCC--CCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQL--VTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~--at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|+++ +|.++||+|||++|+.+||||.. ....|+.|...+
T Consensus 19 l~~~~~a~~~eIk~aYr~la~~~HPDk~~-----~~~~f~~i~~AY 59 (79)
T 1faf_A 19 LPRQLWGDFGRMQQAYKQQSLLLHPDKGG-----SHALMQELNSLW 59 (79)
T ss_dssp CCSSSTTCHHHHHHHHHHHHHHSSGGGSC-----CHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCcCCCC-----CHHHHHHHHHHH
Confidence 4667 99999999999999999999864 344566555544
No 21
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=98.68 E-value=3.8e-08 Score=60.28 Aligned_cols=40 Identities=30% Similarity=0.418 Sum_probs=30.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|++++|.+|||+|||++++.+||||+..- ...|+.|...+
T Consensus 16 v~~~as~~eIk~ayr~l~~~~HPDk~~~~----~~~f~~i~~Ay 55 (92)
T 2o37_A 16 VSPSANEQELKKGYRKAALKYHPDKPTGD----TEKFKEISEAF 55 (92)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHCTTSTTCC----HHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCh----HHHHHHHHHHH
Confidence 57899999999999999999999998632 33455444433
No 22
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=98.64 E-value=4e-08 Score=65.67 Aligned_cols=42 Identities=19% Similarity=0.413 Sum_probs=32.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCS 43 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~ 43 (76)
|+++||.+|||+|||++++.+||||+..- +.+...|+.|...
T Consensus 10 ~~~~a~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~f~~i~~A 51 (210)
T 3apq_A 10 VSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKINRA 51 (210)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHCGGGCTTC-TTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHHHHH
Confidence 57899999999999999999999998642 3455556655443
No 23
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=98.63 E-value=1.2e-08 Score=64.76 Aligned_cols=44 Identities=25% Similarity=0.361 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcccch---h---chHHHHHHHHHhhhhhh
Q psy5338 4 LVTPADVKKSYRKACLAVHPDKILEWT---E---GKKGNIRALLCSLHTIL 48 (76)
Q Consensus 4 ~at~~eikkayr~~a~~~hPDKi~~W~---e---~ke~n~R~LL~~l~~vL 48 (76)
.||.+|||+|||++|+.+||||+++-. + .++..|+.|-..+ +||
T Consensus 51 ~As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AY-evL 100 (106)
T 3ag7_A 51 MIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAW-DHF 100 (106)
T ss_dssp SCSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHH-HHH
Confidence 499999999999999999999987411 1 2356677665544 444
No 24
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.62 E-value=5.6e-08 Score=57.27 Aligned_cols=40 Identities=28% Similarity=0.265 Sum_probs=30.2
Q ss_pred CCC-CCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhhh
Q psy5338 1 MSQ-LVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLH 45 (76)
Q Consensus 1 ~~~-~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l~ 45 (76)
|++ ++|.+|||+|||++++.+||||. +....|..|...++
T Consensus 22 l~~~~a~~~eIk~ayr~l~~~~HPDk~-----g~~~~f~~i~~Aye 62 (71)
T 2guz_A 22 LTENTLTKKKLKEVHRKIMLANHPDKG-----GSPFLATKINEAKD 62 (71)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHHCGGGT-----CCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCC-----CCHHHHHHHHHHHH
Confidence 456 69999999999999999999984 33345555555443
No 25
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=98.60 E-value=4.4e-08 Score=61.01 Aligned_cols=43 Identities=14% Similarity=0.351 Sum_probs=32.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|+++||.+|||+|||++++.+||||+..- +.++..|+.|...+
T Consensus 11 v~~~as~~eIk~ayr~l~~~~HPDk~~~~-~~a~~~f~~i~~Ay 53 (103)
T 1bq0_A 11 VSKTAEEREIRKAYKRLAMKYHPDRNQGD-KEAEAKFKEIKEAY 53 (103)
T ss_dssp SCSSCCHHHHHHHHHHHHTTTCTTTCTTT-CTHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHH
Confidence 57899999999999999999999998742 33445555554443
No 26
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=98.54 E-value=5.7e-08 Score=67.24 Aligned_cols=44 Identities=45% Similarity=0.474 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchh--chHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTE--GKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e--~ke~n~R~LL~~l 44 (76)
|+++||.+|||+|||++++.+||||+..-.. .++..|..|...+
T Consensus 125 v~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAY 170 (182)
T 1n4c_A 125 MADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAW 170 (182)
T ss_dssp GGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999875321 1455666655544
No 27
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=98.53 E-value=6.2e-08 Score=60.76 Aligned_cols=44 Identities=16% Similarity=0.239 Sum_probs=32.5
Q ss_pred CCCCC-CHHHHHHHHHHHHHHhCCCCccc--chhchHHHHHHHHHhh
Q psy5338 1 MSQLV-TPADVKKSYRKACLAVHPDKILE--WTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~a-t~~eikkayr~~a~~~hPDKi~~--W~e~ke~n~R~LL~~l 44 (76)
|+++| |.+|||+|||++++.+||||+.. -.+.+...|+.|...+
T Consensus 23 v~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY 69 (109)
T 2qsa_A 23 VNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAY 69 (109)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHH
Confidence 46788 99999999999999999999864 1123445555555444
No 28
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=98.46 E-value=5.7e-08 Score=62.45 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=25.3
Q ss_pred CCCCCCH--HHHHHHHHHHHHHhCCCCccc
Q psy5338 1 MSQLVTP--ADVKKSYRKACLAVHPDKILE 28 (76)
Q Consensus 1 ~~~~at~--~eikkayr~~a~~~hPDKi~~ 28 (76)
|+++|+. ++||+|||++|+.+||||+.+
T Consensus 16 v~~~as~~~~eIk~aYr~la~~~HPDk~~~ 45 (114)
T 1gh6_A 16 LERSAWGNIPLMRKAYLKKCKEFHPDKGGD 45 (114)
T ss_dssp CCTTSCSCHHHHHHHHHHTTTTCCTTTCCT
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHCCCCCcc
Confidence 5678888 999999999999999999764
No 29
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=98.45 E-value=3.3e-07 Score=60.43 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=26.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccc
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEW 29 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W 29 (76)
|+++|+.++||+|||++++.+||||+..-
T Consensus 18 v~~~a~~~eIk~aYr~l~~~~HPDk~~~~ 46 (155)
T 2l6l_A 18 ADPSANISDLKQKYQKLILMYHPDKQSTD 46 (155)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHSCCCCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCC
Confidence 57899999999999999999999998753
No 30
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.33 E-value=6.3e-08 Score=71.42 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHHHHhh
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSL 44 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~LL~~l 44 (76)
|+++||.+|||+|||++|+.+||||+.+ +.++..|+.|...+
T Consensus 36 v~~~as~~eIk~aYr~la~~~HPDk~~~--~~a~~~f~~i~~Ay 77 (329)
T 3lz8_A 36 VQPTDDLKTIKTAYRRLARKYHPDVSKE--NDAEAKFKDLAEAW 77 (329)
T ss_dssp --------------------------------------------
T ss_pred cCCCCCHHHHHHHHHHHHHHHCCCCCCC--hHHHHHHHHHHHHH
Confidence 5789999999999999999999999873 35666676665544
No 31
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=98.22 E-value=1.6e-06 Score=58.68 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=25.9
Q ss_pred CCCCC--CHHHHHHHHHHHHHHhCCCCcccc
Q psy5338 1 MSQLV--TPADVKKSYRKACLAVHPDKILEW 29 (76)
Q Consensus 1 ~~~~a--t~~eikkayr~~a~~~hPDKi~~W 29 (76)
|++++ |.++||++||++++.+||||+..-
T Consensus 9 l~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~ 39 (171)
T 1fpo_A 9 LPARYQLDTQALSLRFQDLQRQYHPDKFASG 39 (171)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHTCGGGGTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCcCCCCCC
Confidence 46777 999999999999999999998753
No 32
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=98.19 E-value=1.1e-06 Score=60.42 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=27.8
Q ss_pred CCCCCC--HHHHHHHHHHHHHHhCCCCcccchh-chHHHHHHHHHh
Q psy5338 1 MSQLVT--PADVKKSYRKACLAVHPDKILEWTE-GKKGNIRALLCS 43 (76)
Q Consensus 1 ~~~~at--~~eikkayr~~a~~~hPDKi~~W~e-~ke~n~R~LL~~ 43 (76)
|+++|+ .+|||+|||++|+.+||||+.+-.. ...+....+|++
T Consensus 19 l~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsd 64 (174)
T 2pf4_E 19 LERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMED 64 (174)
T ss_dssp CCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCC
Confidence 467787 5999999999999999999764110 233444444544
No 33
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=98.18 E-value=2.5e-06 Score=57.76 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=25.3
Q ss_pred CCCCCC--HHHHHHHHHHHHHHhCCCCcccc
Q psy5338 1 MSQLVT--PADVKKSYRKACLAVHPDKILEW 29 (76)
Q Consensus 1 ~~~~at--~~eikkayr~~a~~~hPDKi~~W 29 (76)
|+++++ .++||++||++++.+||||+..-
T Consensus 12 l~~~a~id~~eIk~aYr~l~~~~HPDk~~~~ 42 (174)
T 3hho_A 12 LPIQFELDGSLLSSQFRALQKRFHPDNFATA 42 (174)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHHCGGGSTTS
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC
Confidence 467777 99999999999999999998753
No 34
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=98.11 E-value=3.6e-06 Score=58.65 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCcccc
Q psy5338 4 LVTPADVKKSYRKACLAVHPDKILEW 29 (76)
Q Consensus 4 ~at~~eikkayr~~a~~~hPDKi~~W 29 (76)
+++.++||++||++++.+||||+..-
T Consensus 56 ~a~~~eIk~aYr~L~~~~HPDk~~~~ 81 (207)
T 3bvo_A 56 RVDTAKLQHRYQQLQRLVHPDFFSQR 81 (207)
T ss_dssp CCCHHHHHHHHHHHHHHHCGGGGTTS
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCC
Confidence 37899999999999999999998753
No 35
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=98.11 E-value=1.3e-06 Score=59.81 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCccc
Q psy5338 3 QLVTPADVKKSYRKACLAVHPDKILE 28 (76)
Q Consensus 3 ~~at~~eikkayr~~a~~~hPDKi~~ 28 (76)
.+||.++||++||++++.+||||+..
T Consensus 28 ~~a~~~eIk~aYr~la~~~HPDk~~~ 53 (181)
T 3uo3_A 28 WTIDQSRLRKEYRQLQAQHHPDMAQQ 53 (181)
T ss_dssp SCCCHHHHHHHHHHHHHTCCTTSCCS
T ss_pred CCCCHHHHHHHHHHHHHHhCcCCCcc
Confidence 37999999999999999999999874
No 36
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=97.96 E-value=1.4e-06 Score=67.84 Aligned_cols=39 Identities=21% Similarity=0.480 Sum_probs=15.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCcccchhchHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPDKILEWTEGKKGNIRAL 40 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPDKi~~W~e~ke~n~R~L 40 (76)
|+++||.+|||+|||++|+.+||||+..- +.++..|+.|
T Consensus 29 ~~~~a~~~~i~~ay~~l~~~~hpd~~~~~-~~~~~~f~~i 67 (780)
T 3apo_A 29 VSKTASSREIRQAFKKLALKLHPDKNPNN-PNAHGDFLKI 67 (780)
T ss_dssp CCTTCCHHHHHHHHCC------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHHCcCCCCCC-hHHHHHHHHH
Confidence 57899999999999999999999998532 2334444433
No 37
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=97.64 E-value=2.7e-05 Score=45.75 Aligned_cols=22 Identities=5% Similarity=0.036 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCc
Q psy5338 5 VTPADVKKSYRKACLAVHPDKI 26 (76)
Q Consensus 5 at~~eikkayr~~a~~~hPDKi 26 (76)
++.++|+++||++....||||=
T Consensus 19 a~~~~Ik~~yr~Lm~~nhPDkG 40 (65)
T 2guz_B 19 LNMDKINNRFNYLFEVNDKEKG 40 (65)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGT
T ss_pred CCHHHHHHHHHHHHHHhCCCCC
Confidence 8999999999999999999983
No 38
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.37 E-value=0.0035 Score=43.33 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCcccch--hchHHHHHHHHHh
Q psy5338 2 SQLVTPADVKKSYRKACLAVHPDKILEWT--EGKKGNIRALLCS 43 (76)
Q Consensus 2 ~~~at~~eikkayr~~a~~~hPDKi~~W~--e~ke~n~R~LL~~ 43 (76)
.+.++.++++++|+++++..|||+...-. +..+..|+.|...
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~a 434 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAA 434 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHH
Confidence 46778899999999999999999887432 2345555555443
No 39
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=85.16 E-value=2.2 Score=25.50 Aligned_cols=63 Identities=19% Similarity=0.357 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCC-CcccchhchHHHHHHHHHhhhhhhcCCCCc-cccccccC--CchhHHHHHHhhc
Q psy5338 3 QLVTPADVKKSYRKACLAVHPD-KILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQLV--TPADVKKSYRKAC 75 (76)
Q Consensus 3 ~~at~~eikkayr~~a~~~hPD-Ki~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l~--~~~~vK~~y~ka~ 75 (76)
++.|..+++..|+.. .+|+ +-..|++.+...+..++..+ |..| .|+- .|- ++.+||..|...+
T Consensus 35 ~~Rt~~qcr~Rw~~~---l~p~~~~~~Wt~eEd~~L~~~~~~~------G~~W~~Ia~-~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 35 KGRIGKQCRERWHNH---LNPEVKKTSWTEEEDRIIYQAHKRL------GNRWAEIAK-LLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp TTCCHHHHHHHHHHT---TCCCCCCCCCCHHHHHHHHHHHHHH------SSCHHHHHT-TCTTCCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHhc---cCCcccccCCCHHHHHHHHHHHHHh------CCCHHHHHH-HcCCCCHHHHHHHHHHHH
Confidence 356788888877763 6787 55679887777777776665 4689 8763 232 5688999987643
No 40
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=80.00 E-value=5.5 Score=24.63 Aligned_cols=63 Identities=21% Similarity=0.357 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCC-CcccchhchHHHHHHHHHhhhhhhcCCCCc-ccccccc--CCchhHHHHHHhhc
Q psy5338 3 QLVTPADVKKSYRKACLAVHPD-KILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQL--VTPADVKKSYRKAC 75 (76)
Q Consensus 3 ~~at~~eikkayr~~a~~~hPD-Ki~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l--~~~~~vK~~y~ka~ 75 (76)
++.|..+++..|.. ..+|+ +-..|++.+...+..+...+ |..| .|+- .| =++.+||..|...+
T Consensus 58 ~~Rt~~qcr~Rw~~---~l~p~~~~~~WT~eEd~~L~~~~~~~------G~~W~~Ia~-~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 58 KGRIGKQCRERWHN---HLNPEVKKTSWTEEEDRIIYQAHKRL------GNRWAEIAK-LLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp SSCCHHHHHHHHHH---TTCSSSCCSCCCHHHHHHHHHHHHHH------CSCHHHHGG-GSTTCCHHHHHHHHHTTT
T ss_pred cCCcHHHHHHHHHH---hcccccccccCCHHHHHHHHHHHHHH------CcCHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence 35678888887775 45787 55679877776666666655 4689 8773 23 26688999987543
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=72.53 E-value=8 Score=24.68 Aligned_cols=63 Identities=19% Similarity=0.357 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCC-CcccchhchHHHHHHHHHhhhhhhcCCCCc-cccccccC--CchhHHHHHHhhc
Q psy5338 3 QLVTPADVKKSYRKACLAVHPD-KILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQLV--TPADVKKSYRKAC 75 (76)
Q Consensus 3 ~~at~~eikkayr~~a~~~hPD-Ki~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l~--~~~~vK~~y~ka~ 75 (76)
++.|..+++..|... ++|+ +-..|++.+..-+..++..+ |..| .|+- .|. ++.+||..|...+
T Consensus 89 ~~Rt~~qcr~Rw~~~---l~p~~~~~~WT~eEd~~L~~~~~~~------g~~W~~Ia~-~l~gRt~~~~knr~~~~~ 155 (159)
T 1h89_C 89 KGRIGKQCRERWHNH---LNPEVKKTSWTEEEDRIIYQAHKRL------GNRWAEIAK-LLPGRTDNAIKNHWNSTM 155 (159)
T ss_dssp TTCCHHHHHHHHHHT---TCTTSCCSCCCHHHHHHHHHHHHHH------CSCHHHHHT-TSTTCCHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHH---hCccccccCCChHHHHHHHHHHHHH------CCCHHHHHH-HCCCCCHHHHHHHHHHHH
Confidence 356888888888754 5776 55679777776666666555 4689 8763 232 6688999987643
No 42
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=71.09 E-value=8.7 Score=23.04 Aligned_cols=61 Identities=13% Similarity=0.360 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCC-CcccchhchHHHHHHHHHhhhhhhcCCCCc-cccccccC--CchhHHHHHHhh
Q psy5338 4 LVTPADVKKSYRKACLAVHPD-KILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQLV--TPADVKKSYRKA 74 (76)
Q Consensus 4 ~at~~eikkayr~~a~~~hPD-Ki~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l~--~~~~vK~~y~ka 74 (76)
+-|..+++..|.. .++|+ +-..|++.+...|..+...+ |..| .|+- .|- ++.+||..|...
T Consensus 33 ~Rt~~qcr~Rw~~---~L~p~i~~~~WT~eEd~~L~~~~~~~------G~~W~~Ia~-~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 33 TRNPRQCRERWNN---YINPALRTDPWSPEEDMLLDQKYAEY------GPKWNKISK-FLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp TSCHHHHHHHHHH---HSSSCCTTCCCCHHHHHHHHHHHHHT------CSCHHHHHH-HHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH---HHcccccccccCHHHHHHHHHHHHHh------CcCHHHHHH-HCCCCCHHHHHHHHHHH
Confidence 5677888887765 46787 45679877777676666655 4589 8763 232 568899888753
No 43
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=61.60 E-value=23 Score=21.81 Aligned_cols=60 Identities=12% Similarity=0.295 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCC-CcccchhchHHHHHHHHHhhhhhhcCCCCc-cccccccC---CchhHHHHHHhh
Q psy5338 4 LVTPADVKKSYRKACLAVHPD-KILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQLV---TPADVKKSYRKA 74 (76)
Q Consensus 4 ~at~~eikkayr~~a~~~hPD-Ki~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l~---~~~~vK~~y~ka 74 (76)
+.|..+++..|+.. .+|+ +-..|++.+...+..++..+ |.+| .|+- .+ ++.+||..|...
T Consensus 42 ~Rt~~qcr~Rw~~~---l~p~~~~~~WT~eEd~~L~~~v~~~------G~~W~~Ia~--~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 42 NRNARQCRDRWKNY---LAPSISHTPWTAEEDALLVQKIQEY------GRQWAIIAK--FFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp TCCHHHHHHHHHHH---TSTTSCCSCCCHHHHHHHHHHHHHH------CSCHHHHHT--TSTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhh---cccccccccCCHHHHHHHHHHHHHH------CcCHHHHHH--HcCCCCHHHHHHHHHHH
Confidence 56778888877654 4677 44569888877777777666 4689 7763 33 567899888753
No 44
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=60.09 E-value=27 Score=21.49 Aligned_cols=61 Identities=18% Similarity=0.349 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCC-CcccchhchHHHHHHHHHhhhhhhcCCCCc-cccccccC--CchhHHHHHHhh
Q psy5338 4 LVTPADVKKSYRKACLAVHPD-KILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQLV--TPADVKKSYRKA 74 (76)
Q Consensus 4 ~at~~eikkayr~~a~~~hPD-Ki~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l~--~~~~vK~~y~ka 74 (76)
+.|..+++..|.. .++|+ +-..|++.+...+..+...+ |.+| .|+- .|- ++.+||..|...
T Consensus 34 ~Rt~~qcr~Rw~~---~l~p~~~~~~Wt~eEd~~L~~~~~~~------G~~W~~Ia~-~l~gRt~~~~k~rw~~~ 98 (131)
T 3zqc_A 34 NRSPKQCRERWFN---HLDPAVVKHAWTPEEDETIFRNYLKL------GSKWSVIAK-LIPGRTDNAIKNRWNSS 98 (131)
T ss_dssp TSCHHHHHHHHHH---HTSTTCCCSCCCHHHHHHHHHHHHHS------CSCHHHHTT-TSTTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHhh---ccCccccCCCCCHHHHHHHHHHHHHH------CcCHHHHHH-HcCCCCHHHHHHHHHHH
Confidence 5677878777765 46787 44569877777777766655 4689 7763 232 668899888754
No 45
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.11 E-value=6.7 Score=21.62 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=30.1
Q ss_pred hCCC-CcccchhchHHHHHHHHHhhhhhhcCCCCc-cccccccC--CchhHHHHHHhh
Q psy5338 21 VHPD-KILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQLV--TPADVKKSYRKA 74 (76)
Q Consensus 21 ~hPD-Ki~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l~--~~~~vK~~y~ka 74 (76)
++|+ +-..|+..+...+..+...+ |.+| .|+- ++ ++.||+..|...
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~------g~~W~~Ia~--~~gRt~~qcr~Rw~~~ 52 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLM------PTQWRTIAP--IIGRTAAQCLEHYEFL 52 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHC------TTCHHHHHH--HHSSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHc------CCCHHHHhc--ccCcCHHHHHHHHHHH
Confidence 4566 44569776666665554433 3489 8776 44 778999988764
No 46
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=40.08 E-value=17 Score=23.95 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=21.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCC
Q psy5338 1 MSQLVTPADVKKSYRKACLAVHPD 24 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a~~~hPD 24 (76)
++...|.+|++++-++...+.||+
T Consensus 40 ig~~Its~eL~~~AqeiL~q~hp~ 63 (138)
T 1qqr_A 40 IGDTITSQELLAQAQSILNKNHPG 63 (138)
T ss_dssp TTCEEEHHHHHHHHHHHHHHHSTT
T ss_pred cCcccCHHHHHHHHHHHHHhcCCC
Confidence 356678999999999999999998
No 47
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=38.46 E-value=13 Score=28.25 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhCCC
Q psy5338 8 ADVKKSYRKACLAVHPD 24 (76)
Q Consensus 8 ~eikkayr~~a~~~hPD 24 (76)
.+|++|||++|+...++
T Consensus 646 ~~~~~ayr~la~~~~~~ 662 (681)
T 2pzi_A 646 LGVEASLRSLARVAPTQ 662 (681)
T ss_dssp HHHHHHHHHHHHHCSSH
T ss_pred HHHHHHHHHHHHhCCCh
Confidence 44899999999976665
No 48
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=35.80 E-value=24 Score=19.71 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=30.7
Q ss_pred CCC-CcccchhchHHHHHHHHHhhhhhhcCCCCc-cccccccC--CchhHHHHHHhh
Q psy5338 22 HPD-KILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQLV--TPADVKKSYRKA 74 (76)
Q Consensus 22 hPD-Ki~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l~--~~~~vK~~y~ka 74 (76)
.|+ +-..|++.+...|..++..+. .+| .|+-. |- ++.|||..|.+.
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G------~~W~~Ia~~-~~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFG------RRWTKISKL-IGSRTVLQVKSYARQY 53 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTC------SCHHHHHHH-HSSSCHHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHC------cCHHHHHHH-cCCCCHHHHHHHHHHH
Confidence 455 445698877777777777654 389 77652 32 568899887653
No 49
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=31.61 E-value=42 Score=21.59 Aligned_cols=20 Identities=0% Similarity=0.131 Sum_probs=17.2
Q ss_pred CCCCHHHHHHHHHHHHHHhC
Q psy5338 3 QLVTPADVKKSYRKACLAVH 22 (76)
Q Consensus 3 ~~at~~eikkayr~~a~~~h 22 (76)
.+.|.+|+++.+|++|+++-
T Consensus 15 ~~l~d~el~~rar~LA~kIv 34 (121)
T 3kp1_E 15 ANLSDEELQTRFWEMAEKIV 34 (121)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHH
Confidence 46799999999999998764
No 50
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=30.86 E-value=19 Score=18.70 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=13.6
Q ss_pred cccCCchhHHHHHHhhc
Q psy5338 59 SQLVTPADVKKSYRKAC 75 (76)
Q Consensus 59 ~~l~~~~~vK~~y~ka~ 75 (76)
+|..+...+-++|-|||
T Consensus 6 SDiWDdtALIKayDKAV 22 (37)
T 3s6n_M 6 SDIWDDTALIKAYDKAV 22 (37)
T ss_pred hhhhhhHHHHHHHHHHH
Confidence 46677778889999987
No 51
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=29.38 E-value=42 Score=18.78 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=15.3
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKAC 18 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a 18 (76)
|+.++|+++|+..+.+.-
T Consensus 9 Lp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 9 LPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp CCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 678999999999888763
No 52
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=28.29 E-value=33 Score=19.72 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=29.8
Q ss_pred HHHhCCC-CcccchhchHHHHHHHHHhhhhhhcCCCCc-cccccccCCchhHHHHHHh
Q psy5338 18 CLAVHPD-KILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQLVTPADVKKSYRK 73 (76)
Q Consensus 18 a~~~hPD-Ki~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l~~~~~vK~~y~k 73 (76)
...++|+ +-..|++.+...+..+...+. .+| .|+-.-==++.+||-.|+.
T Consensus 14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G------~kW~~IA~~lgRt~~q~knRw~~ 65 (73)
T 2llk_A 14 LYFQGDRNHVGKYTPEEIEKLKELRIKHG------NDWATIGAALGRSASSVKDRCRL 65 (73)
T ss_dssp -----CCCCCCSSCHHHHHHHHHHHHHHS------SCHHHHHHHHTSCHHHHHHHHHH
T ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHHHC------CCHHHHHHHhCCCHHHHHHHHHH
Confidence 3456787 445798888777777776654 468 7654322255788888864
No 53
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=26.46 E-value=56 Score=16.69 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=28.5
Q ss_pred ccchhchHHHHHHHHHhhhhhhcCCC-Cc-cccccc-cCCchhHHHHHHhhc
Q psy5338 27 LEWTEGKKGNIRALLCSLHTILWEGA-KW-KCEMSQ-LVTPADVKKSYRKAC 75 (76)
Q Consensus 27 ~~W~e~ke~n~R~LL~~l~~vLw~~~-~w-~v~~~~-l~~~~~vK~~y~ka~ 75 (76)
..|++.+...+..+...+ |. +| .|+-.- ==++.|++..|.+.+
T Consensus 4 ~~Wt~eED~~L~~~v~~~------G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQN------GTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCHHHHHHHHHHHHHH------CSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh------CCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 458777777777777665 34 78 776431 126788988887643
No 54
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=26.20 E-value=62 Score=17.21 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=31.4
Q ss_pred CCCcccchhchHHHHHHHHHhhhhhhcCCCCc-ccccccc--CCchhHHHHHHhh
Q psy5338 23 PDKILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQL--VTPADVKKSYRKA 74 (76)
Q Consensus 23 PDKi~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l--~~~~~vK~~y~ka 74 (76)
|..-..|++.+...+..++..+.. .+| .|+-.-- =+++|++..|.+-
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~-----~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGL-----GNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTT-----TCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc-----CCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 444457988888888887776532 588 8764322 2568888888764
No 55
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=26.05 E-value=43 Score=19.89 Aligned_cols=18 Identities=6% Similarity=0.176 Sum_probs=14.9
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKAC 18 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a 18 (76)
+.+.||-.|||+|-+++-
T Consensus 29 V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 29 VDDRASKGEVADAVEEQY 46 (85)
T ss_dssp ECTTCCHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHh
Confidence 357899999999988775
No 56
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.96 E-value=54 Score=17.70 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=27.8
Q ss_pred CCcccchhchHHHHHHHHHhhhhhhcCCCCc-cccccccC--CchhHHHHHH
Q psy5338 24 DKILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQLV--TPADVKKSYR 72 (76)
Q Consensus 24 DKi~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l~--~~~~vK~~y~ 72 (76)
+....|++.+...|...+..+ |-+| .|. ..|- ++.+|...|.
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~------gk~w~~Ia-~~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQH------PKNFGLIA-SYLERKSVPDCVLYYY 54 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHS------TTCHHHHH-HHCTTSCHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHh------CCCHHHHH-HHcCCCCHHHHHHHHH
Confidence 356679888888888887765 4688 776 3332 4466666653
No 57
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=24.71 E-value=61 Score=16.81 Aligned_cols=17 Identities=6% Similarity=0.133 Sum_probs=13.7
Q ss_pred CCCCCCHHHHHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKA 17 (76)
Q Consensus 1 ~~~~at~~eikkayr~~ 17 (76)
|+.+.|+++|+..+.+.
T Consensus 7 Lp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 7 LSPDTPEEKIREYFGGF 23 (75)
T ss_dssp CCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhc
Confidence 56788999998888765
No 58
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=24.50 E-value=46 Score=20.12 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.1
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKAC 18 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a 18 (76)
+.+.||-.|||+|-+++-
T Consensus 29 V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 29 VSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp ECSSCTHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHh
Confidence 367899999999988875
No 59
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=24.17 E-value=48 Score=19.96 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=14.9
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKAC 18 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a 18 (76)
+.+.||-.|||+|.+++-
T Consensus 34 V~~~AnK~eIK~AVE~lf 51 (93)
T 3r8s_T 34 VAKDATKAEIKAAVQKLF 51 (93)
T ss_dssp ECSSCCHHHHHHHHHHHS
T ss_pred ECCCCCHHHHHHHHHHHc
Confidence 357899999999988775
No 60
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.85 E-value=50 Score=19.67 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=14.8
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKAC 18 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a 18 (76)
+.+.||-.|||+|-+++-
T Consensus 30 Vd~~AnK~qIK~AVe~lf 47 (86)
T 3j21_T 30 VDRRATKQDIKRAVEEIF 47 (86)
T ss_dssp ECTTCCHHHHHHHHHHHT
T ss_pred EcCCCCHHHHHHHHHHHc
Confidence 357899999999988775
No 61
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=22.40 E-value=55 Score=19.66 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=14.8
Q ss_pred CCCCCCHHHHHHHHHHHH
Q psy5338 1 MSQLVTPADVKKSYRKAC 18 (76)
Q Consensus 1 ~~~~at~~eikkayr~~a 18 (76)
+.+.||-.|||+|-+++-
T Consensus 28 V~~~AnK~qIK~aVe~lf 45 (92)
T 3tve_T 28 VHPKATKTEIKNAVETAF 45 (92)
T ss_dssp ECTTCCHHHHHHHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHh
Confidence 357899999999888775
No 62
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=20.29 E-value=1e+02 Score=16.17 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=31.2
Q ss_pred CC-CcccchhchHHHHHHHHHhhhhhhcCCCCc-ccccccc-CCchhHHHHHHhhc
Q psy5338 23 PD-KILEWTEGKKGNIRALLCSLHTILWEGAKW-KCEMSQL-VTPADVKKSYRKAC 75 (76)
Q Consensus 23 PD-Ki~~W~e~ke~n~R~LL~~l~~vLw~~~~w-~v~~~~l-~~~~~vK~~y~ka~ 75 (76)
|+ +-..|++.+...+..+...+.. .+| .|+-.-- =++.|++..|.+.+
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~-----~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ-----QDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT-----TCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 44 3346887777777777766531 489 7765421 27788999887653
Done!