RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5338
(76 letters)
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 36.0 bits (84), Expect = 9e-05
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ ++KK+YRK L HPDK
Sbjct: 13 SDEEIKKAYRKLALKYHPDK 32
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in
Prosite are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 35.2 bits (82), Expect = 2e-04
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ ++KK+YRK L HPDK
Sbjct: 13 SDEEIKKAYRKLALKYHPDK 32
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 34.1 bits (79), Expect = 4e-04
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ ++KK+YRK L HPDK
Sbjct: 14 SLDEIKKAYRKLALKYHPDK 33
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 33.8 bits (78), Expect = 0.003
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
M+ ++K+Y + C HPDK
Sbjct: 21 MAAWGNLPLMRKAYLRKCKEYHPDK 45
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 33.3 bits (76), Expect = 0.004
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
+S+ +P ++KK+YRK + HPDK
Sbjct: 9 VSKTASPEEIKKAYRKLAVKYHPDK 33
>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed.
Length = 153
Score = 32.3 bits (74), Expect = 0.008
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
S ++K+Y + CL HPDK
Sbjct: 15 RSAWGNLPLMRKAYLRKCLEFHPDK 39
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 31.1 bits (71), Expect = 0.033
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ ++KK+YRK HPD+
Sbjct: 17 SEEEIKKAYRKLAKKYHPDR 36
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 30.2 bits (68), Expect = 0.056
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 9 DVKKSYRKACLAVHPDK 25
D+KK+YRK + HPDK
Sbjct: 21 DIKKAYRKLAMKYHPDK 37
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 30.2 bits (68), Expect = 0.059
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
+S+ ++KK+YRK L HPDK
Sbjct: 11 VSRSADKDEIKKAYRKLALKYHPDK 35
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 29.8 bits (67), Expect = 0.082
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
+S+ T +++KK+YRK + HPDK
Sbjct: 36 LSKDCTTSEIKKAYRKLAIKHHPDK 60
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 29.3 bits (66), Expect = 0.14
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 5 VTPADVKKSYRKACLAVHPDK 25
+ ++KKSYRK + HPD+
Sbjct: 16 ASEEEIKKSYRKLAMKYHPDR 36
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 28.9 bits (65), Expect = 0.19
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ ++KK+YRK +HPD
Sbjct: 22 SAEEIKKAYRKLARELHPDA 41
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 28.7 bits (64), Expect = 0.19
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Query: 6 TPADVKKSYRKACLAVHPDKILEWTEGKKGNIRA 39
T A++KK+YRK HPD KG+ +A
Sbjct: 22 TEAEIKKAYRKLAREYHPD-------ANKGDAKA 48
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 28.6 bits (64), Expect = 0.23
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
+S+ T ++KK+YRK + HPDK
Sbjct: 13 VSKTATVDEIKKAYRKKAIQYHPDK 37
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included
by this family. Eukaryotic (mitochondrial and
chloroplast) forms are not included in the scope of
this family.
Length = 354
Score = 27.9 bits (63), Expect = 0.37
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ ++KK+YRK HPD+
Sbjct: 13 SEEEIKKAYRKLAKKYHPDR 32
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 27.8 bits (62), Expect = 0.43
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 8 ADVKKSYRKACLAVHPDK 25
++KK++RK + HPDK
Sbjct: 19 DEIKKAFRKLAIKYHPDK 36
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 27.8 bits (62), Expect = 0.44
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 9 DVKKSYRKACLAVHPDK 25
++KK+YRK L HPD+
Sbjct: 20 EIKKAYRKLALQYHPDR 36
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 27.9 bits (62), Expect = 0.44
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
+S+ + ++K +YRK L HPD+
Sbjct: 10 VSRTASADEIKSAYRKLALKYHPDR 34
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 27.6 bits (61), Expect = 0.53
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
+S+ + ++KK+YRK + HPDK
Sbjct: 11 LSKGASKDEIKKAYRKIAIKYHPDK 35
>gnl|CDD|235386 PRK05279, PRK05279, N-acetylglutamate synthase; Validated.
Length = 441
Score = 27.4 bits (62), Expect = 0.64
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 17 ACLAVHPD 24
ACLAVHPD
Sbjct: 363 ACLAVHPD 370
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 27.0 bits (61), Expect = 0.77
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 8 ADVKKSYRKACLAVHPDK 25
++KK+YRK + HPD+
Sbjct: 19 DEIKKAYRKLAMKYHPDR 36
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 26.6 bits (59), Expect = 1.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 6 TPADVKKSYRKACLAVHPD 24
+ A++K++YRK +HPD
Sbjct: 16 SDAEIKRAYRKLARELHPD 34
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 26.6 bits (58), Expect = 1.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 10 VKKSYRKACLAVHPDK 25
+KKSYRK L HPD+
Sbjct: 20 IKKSYRKLALKYHPDR 35
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 26.3 bits (59), Expect = 1.6
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 5 VTPAD----VKKSYRKACLAVHPDK 25
V+ +D +K++YRK HPDK
Sbjct: 208 VSESDDDQEIKRAYRKLMSEHHPDK 232
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 26.3 bits (58), Expect = 1.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 9 DVKKSYRKACLAVHPD 24
++KK+YRK HPD
Sbjct: 21 EIKKAYRKLARKYHPD 36
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 25.9 bits (56), Expect = 1.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ ++KK+YRK L HPD+
Sbjct: 19 SLEEIKKAYRKLALKYHPDR 38
>gnl|CDD|235952 PRK07187, PRK07187, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 721
Score = 25.8 bits (57), Expect = 2.6
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 20 AVHPDKILEWTEGKKGN----IR----ALLCSLHTILWEGAKWKCEMSQLVTPADVKKSY 71
A HPD +L + + K+ N IR +L + I +E AK +M+ L +P D+K+ Y
Sbjct: 253 AHHPD-VLTFLDTKRENADEKIRIKSLSLGLVIPDITFELAKENKDMA-LFSPYDIKREY 310
Query: 72 RKA 74
K
Sbjct: 311 GKP 313
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 25.3 bits (55), Expect = 3.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 9 DVKKSYRKACLAVHPDKI 26
D+KK YR + HPDK
Sbjct: 114 DIKKRYRMLSMKFHPDKA 131
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 25.4 bits (55), Expect = 3.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPD 24
+S+ + AD+KK+Y K HPD
Sbjct: 11 VSKTASQADLKKAYLKLAKQYHPD 34
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 25.1 bits (55), Expect = 3.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 6 TPADVKKSYRKACLAVHPD 24
T ++KK+YR+ HPD
Sbjct: 18 TEEEIKKAYRRLAKKYHPD 36
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 25.3 bits (55), Expect = 3.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
+S+ ++K +YRK + HPDK
Sbjct: 12 VSKSANDEEIKSAYRKLAIKYHPDK 36
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 25.1 bits (55), Expect = 3.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPD 24
+S+ + ++KK+YRK HPD
Sbjct: 12 VSKSASKDEIKKAYRKLSKKYHPD 35
>gnl|CDD|151804 pfam11363, DUF3164, Protein of unknown function (DUF3164). This
family of proteins has no known function.
Length = 195
Score = 24.9 bits (55), Expect = 5.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 28 EWTEGKKGNIRAL 40
EW+EG + IRAL
Sbjct: 111 EWSEGARAEIRAL 123
>gnl|CDD|189870 pfam01172, SBDS, Shwachman-Bodian-Diamond syndrome (SBDS)
protein. This family is highly conserved in species
ranging from archaea to vertebrates and plants. The
family contains several Shwachman-Bodian-Diamond
syndrome (SBDS) proteins from both mouse and humans.
Shwachman-Diamond syndrome is an autosomal recessive
disorder with clinical features that include pancreatic
exocrine insufficiency, haematological dysfunction and
skeletal abnormalities. It is characterized by bone
marrow failure and leukemia predisposition. Members of
this family play a role in RNA metabolism. In yeast
these proteins have been shown to be critical for the
release and recycling of the nucleolar shuttling factor
Tif6 from pre-60S ribosomes, a key step in 60S
maturation and translational activation of ribosomes.
This data links defective late 60S subunit maturation
to an inherited bone marrow failure syndrome associated
with leukemia predisposition.
Length = 91
Score = 24.0 bits (53), Expect = 6.8
Identities = 7/29 (24%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 19 LAVHPDKILEWTEGKKGNIRALLCSLHTI 47
+ V+P+K+L++ GK+ ++ +L + +
Sbjct: 17 ILVYPNKVLKYRNGKEIDLDEVL-QVDKV 44
>gnl|CDD|224417 COG1500, COG1500, Predicted exosome subunit [Translation,
ribosomal structure and biogenesis].
Length = 234
Score = 24.2 bits (53), Expect = 8.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 19 LAVHPDKILEWTEGKKGNIRALL 41
+ V P+K LE+ EGK+ ++ +L
Sbjct: 21 VLVDPNKALEYREGKEVDLEEVL 43
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.130 0.418
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,668,698
Number of extensions: 257353
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 36
Length of query: 76
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 30
Effective length of database: 8,897,318
Effective search space: 266919540
Effective search space used: 266919540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)