RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5338
(76 letters)
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN
auxilin-like J-domain containing protein, JAC1,
chloroplast accumulation response; 1.80A {Arabidopsis
thaliana}
Length = 106
Score = 72.3 bits (177), Expect = 9e-19
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 24 DKILEWTEGKKGNIRALLCSLHTILWEGAKWK-CEMSQLVTPADVKKSYRKAC 75
KI +W+ GK GNIR+LL +L ILW G+ WK + ++ V+KSY++A
Sbjct: 13 AKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRAL 65
Score = 42.7 bits (100), Expect = 4e-07
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDKI 26
+ ++ V+KSY++A L +HPDK+
Sbjct: 48 LMDMIEGNAVRKSYQRALLILHPDKL 73
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 70.6 bits (172), Expect = 3e-17
Identities = 36/70 (51%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 8 ADVKKSYRKACLAVHPDKILEWTEGKKGNIRALLCSLHTILWEG-AKWK-CEMSQLVTPA 65
A+++K + KILEW EGK+ NIRALL ++HT+LW G KWK M+ LVTP
Sbjct: 73 AEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPE 132
Query: 66 DVKKSYRKAC 75
VKK YRKA
Sbjct: 133 QVKKVYRKAV 142
Score = 43.7 bits (102), Expect = 4e-07
Identities = 18/26 (69%), Positives = 19/26 (73%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDKI 26
M+ LVTP VKK YRKA L VHPDK
Sbjct: 125 MADLVTPEQVKKVYRKAVLVVHPDKA 150
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 66.6 bits (162), Expect = 1e-16
Identities = 34/54 (62%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 24 DKILEWTEGKKGNIRALLCSLHTILWEG-AKWK-CEMSQLVTPADVKKSYRKAC 75
KILEW EGK+ NIRALL ++HT+LW G KWK M+ LVTP VKK YRKA
Sbjct: 5 LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAV 58
Score = 41.5 bits (97), Expect = 9e-07
Identities = 17/26 (65%), Positives = 18/26 (69%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDKI 26
M+ LVTP VKK YRKA L VHP K
Sbjct: 41 MADLVTPEQVKKVYRKAVLVVHPCKA 66
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor
protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 36.3 bits (84), Expect = 1e-04
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
S ++K+Y K C HPDK
Sbjct: 18 RSAWGNIPLMRKAYLKKCKEFHPDK 42
Score = 24.4 bits (53), Expect = 3.6
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 57 EMSQLVTPADVKKSYRKAC 75
E S ++K+Y K C
Sbjct: 17 ERSAWGNIPLMRKAYLKKC 35
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 5e-04
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 15/64 (23%)
Query: 6 TPADVKKSYRKACLAVHPD------KILE--WTEGKKGNIRALLCSLH--TILWEGAKWK 55
PA+ +K + + L+V P +L W + K ++ ++ LH +++ K
Sbjct: 367 EPAEYRKMFDR--LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV---EKQP 421
Query: 56 CEMS 59
E +
Sbjct: 422 KEST 425
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 33.4 bits (76), Expect = 0.001
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
++++Y++ L +HPDK
Sbjct: 21 RQLWGDFGRMQQAYKQQSLLLHPDK 45
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 33.1 bits (76), Expect = 0.001
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ D+KK+YR+ L HPDK
Sbjct: 15 SADDIKKAYRRKALQWHPDK 34
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 32.7 bits (75), Expect = 0.002
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
++KK YRKA L HPDK
Sbjct: 21 NEQELKKGYRKAALKYHPDK 40
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 33.7 bits (77), Expect = 0.002
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+D+K+ Y+K L HPDK
Sbjct: 23 NISDLKQKYQKLILMYHPDK 42
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 33.1 bits (76), Expect = 0.002
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
T D+KKSYRK L HPDK
Sbjct: 30 TSDDIKKSYRKLALKYHPDK 49
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 32.2 bits (74), Expect = 0.002
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ ++KK+YRK L HPDK
Sbjct: 21 SDNELKKAYRKMALKFHPDK 40
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 32.3 bits (74), Expect = 0.003
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+P D+KK+YRK L HPDK
Sbjct: 22 SPEDIKKAYRKLALRWHPDK 41
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 31.8 bits (73), Expect = 0.005
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+++K+Y++ + HPD+
Sbjct: 16 EEREIRKAYKRLAMKYHPDR 35
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 31.6 bits (72), Expect = 0.005
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ +V K+YRK + +HPDK
Sbjct: 40 SRDEVNKAYRKLAVLLHPDK 59
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 31.6 bits (72), Expect = 0.006
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
T A +K +Y + C HPD+
Sbjct: 30 TQAQIKAAYYRQCFLYHPDR 49
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ
domain, endoplasmic reticulum, oxidor; 1.84A {Mus
musculus}
Length = 210
Score = 32.1 bits (73), Expect = 0.007
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ +++++++K L +HPDK
Sbjct: 15 SSREIRQAFKKLALKLHPDK 34
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 31.1 bits (71), Expect = 0.007
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ +KK+YRK L HPDK
Sbjct: 22 SSEAIKKAYRKLALKWHPDK 41
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 31.0 bits (71), Expect = 0.008
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ ++K++YR+ L HPDK
Sbjct: 16 SDEEIKRAYRRQALRYHPDK 35
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 31.8 bits (72), Expect = 0.008
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 1 MSQLVTPADVKKSYRKACLAVHPDK 25
S ++K+Y K C HPDK
Sbjct: 21 RSAWGNIPLMRKAYLKKCKEFHPDK 45
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 31.4 bits (72), Expect = 0.013
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 6 TPADVKKSYRKACLAV--HPDK 25
+K +YR+ LA HPD
Sbjct: 41 DLKTIKTAYRR--LARKYHPDV 60
Score = 24.5 bits (54), Expect = 4.4
Identities = 3/11 (27%), Positives = 6/11 (54%)
Query: 63 TPADVKKSYRK 73
+K +YR+
Sbjct: 41 DLKTIKTAYRR 51
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 31.6 bits (71), Expect = 0.013
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ +++++++K L +HPDK
Sbjct: 34 SSREIRQAFKKLALKLHPDK 53
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 112
Score = 30.9 bits (70), Expect = 0.016
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 2 SQLVTPADVKKSYRKACLAVHPDK 25
+L + + ++ L HPDK
Sbjct: 29 DELSSVEQILAEFKVRALECHPDK 52
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 31.2 bits (71), Expect = 0.016
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 8 ADVKKSYRKACLAVHPDKILEWTEGKK 34
++ K+YRK L HPD E KK
Sbjct: 397 QEIIKAYRKLALQWHPDNFQNEEEKKK 423
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 30.0 bits (68), Expect = 0.019
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ +KK++ K + HPDK
Sbjct: 20 SERQIKKAFHKLAMKYHPDK 39
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 29.6 bits (67), Expect = 0.020
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 5 VTPADVKKSYRKACLAVHPDK 25
+T +K+ +RK LA HPDK
Sbjct: 27 LTKKKLKEVHRKIMLANHPDK 47
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 30.1 bits (68), Expect = 0.021
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+D+K+ Y+K L HPDK
Sbjct: 29 NMSDLKQKYQKLILLYHPDK 48
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 29.7 bits (67), Expect = 0.029
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
++ KK R+ L HPDK
Sbjct: 29 PESERKKIIRRLYLKWHPDK 48
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 29.7 bits (67), Expect = 0.041
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ K+YR HPD+
Sbjct: 29 DKQKLAKAYRALARKHHPDR 48
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 28.8 bits (65), Expect = 0.049
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ D+KK+YR+ L HPDK
Sbjct: 20 SDEDLKKAYRRLALKFHPDK 39
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 28.9 bits (65), Expect = 0.063
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ AD+KK+Y+K HPDK
Sbjct: 30 SQADIKKAYKKLAREWHPDK 49
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 28.7 bits (65), Expect = 0.064
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 6 TPADVKKSYRKACLAVHPDK 25
+ ++KK+Y + HPD
Sbjct: 20 SQKEIKKAYYQLAKKYHPDT 39
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 29.2 bits (65), Expect = 0.095
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 5 VTPADVKKSYRKACLAVHPDK 25
+ + ++K YR+ HPD
Sbjct: 30 IDQSRLRKEYRQLQAQHHPDM 50
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 28.4 bits (63), Expect = 0.17
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 5 VTPADVKKSYRKACLAVHPDK 25
+ + + +R HPD
Sbjct: 18 LDGSLLSSQFRALQKRFHPDN 38
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 28.0 bits (62), Expect = 0.18
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 5 VTPADVKKSYRKACLAVHPDK 25
+ + ++ HPDK
Sbjct: 15 LDTQALSLRFQDLQRQYHPDK 35
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex,
transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae}
PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Length = 456
Score = 26.4 bits (59), Expect = 0.80
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 8/25 (32%)
Query: 17 ACLAVHPD--------KILEWTEGK 33
ACLAV P ++L K
Sbjct: 375 ACLAVSPQAQDGGYGERLLAHIIDK 399
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.130 0.418
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,142,730
Number of extensions: 52345
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 40
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)