RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5338
         (76 letters)



>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
          9913]}
          Length = 98

 Score = 64.6 bits (157), Expect = 3e-16
 Identities = 34/54 (62%), Positives = 39/54 (72%), Gaps = 2/54 (3%)

Query: 24 DKILEWTEGKKGNIRALLCSLHTILWEG-AKWK-CEMSQLVTPADVKKSYRKAC 75
           KILEW EGK+ NIRALL ++HT+LW G  KWK   M+ LVTP  VKK YRKA 
Sbjct: 5  LKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAV 58



 Score = 31.5 bits (71), Expect = 0.003
 Identities = 18/25 (72%), Positives = 19/25 (76%)

Query: 1  MSQLVTPADVKKSYRKACLAVHPDK 25
          M+ LVTP  VKK YRKA L VHPDK
Sbjct: 41 MADLVTPEQVKKVYRKAVLVVHPDK 65


>d1t95a2 d.235.1.2 (A:11-86) Hypothetical protein AF0491,
          N-terminal domain {Archaeon Archaeoglobus fulgidus
          [TaxId: 2234]}
          Length = 76

 Score = 26.2 bits (58), Expect = 0.21
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 19 LAVHPDKILEWTEGKKGNIRALL 41
          + V P    +  EGK+ N   LL
Sbjct: 17 VLVDPYLARDLKEGKEVNFEDLL 39


>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
          {Escherichia coli [TaxId: 562]}
          Length = 76

 Score = 21.5 bits (45), Expect = 9.6
 Identities = 4/30 (13%), Positives = 12/30 (40%)

Query: 5  VTPADVKKSYRKACLAVHPDKILEWTEGKK 34
          +    +   ++      HPDK    ++ ++
Sbjct: 15 LDTQALSLRFQDLQRQYHPDKFASGSQAEQ 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.130    0.418 

Gapped
Lambda     K      H
   0.267   0.0364    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 286,056
Number of extensions: 10638
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 6
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.9 bits)