BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5339
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 137/349 (39%), Gaps = 68/349 (19%)
Query: 120 RYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSD-------------DAITVLAR 166
R + + C VS A + RR K+R + +G +D I ++
Sbjct: 46 RKVFIGNCYAVSPA---TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS 102
Query: 167 SCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLN 226
S T L + + + V+D L +A+S N K L L C+ + G+ IA CR L++L+
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162
Query: 227 IQDCQI-SVEGY---RAVKKYCKRCCIQISCLTASPXXXXXXXXXXXXCSNVDDQGLSLI 282
+++ + V G+ Y + ISCL S V L +
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCL----------------ASEVSFSALERL 206
Query: 283 VSNCPQLIYLYLRRCVKLTDIG--IKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGAT 340
V+ CP L L L R V L + ++ P QL+EL T +Y
Sbjct: 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAP----QLEELGTGGYTAEVRPDVY-------- 254
Query: 341 LRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGK 400
+GL V C +LR L+ G + + C+RL L++
Sbjct: 255 --------------SGLSVALSGCKELRCLS--GFWDAVPAYLPAVYSVCSRLTTLNLSY 298
Query: 401 CDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNI 449
V L L CP +++L + D + D G++ +A C+ L++L +
Sbjct: 299 ATVQSYDLVKLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRV 345
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 90/420 (21%), Positives = 157/420 (37%), Gaps = 85/420 (20%)
Query: 104 VTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEA--VSDDAI 161
VTD L +AK + L ++ C+ S GL IA C L+ L+ R + VS +
Sbjct: 117 VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176
Query: 162 TVLARSCTRLRALDIG--KCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC 219
+ + T L +L+I +VS + L L CPN+K L L + ++ +A
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA-----VPLEKLATLL 231
Query: 220 RGLQQLNIQDCQISVEGYRAVKK--------YCKRCCIQISCLTA-SPXXXXXXXXXXXX 270
+ QL ++ GY A + C ++ CL+
Sbjct: 232 QRAPQLE----ELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287
Query: 271 CSNVDDQGLSL----------IVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSV 320
CS + LS ++ CP+L L++ ++ D G++ + S C L+EL V
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE--DAGLEVLASTCKDLRELRV 345
Query: 321 --------SDCTQVTDFGLYELA----KLGATLRYLSVAKCDQVSDAGLKVIARRCYKLR 368
+T+ GL ++ KL + L + C Q+++A L IAR +
Sbjct: 346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-----CRQMTNAALITIARNRPNMT 400
Query: 369 -------------YLNAR----GCEAV----------------SDDAITVLARSCTRLRA 395
YL G A+ +D + ++
Sbjct: 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEM 460
Query: 396 LDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455
L + SD G+ + C +++KL +R C D+ + A ++ L + C +S
Sbjct: 461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVS 519
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 17/132 (12%)
Query: 342 RYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSD-------------DAITVLAR 388
R + + C VS A + RR K+R + +G +D I ++
Sbjct: 46 RKVFIGNCYAVSPA---TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSS 102
Query: 389 SCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLN 448
S T L + + + V+D L +A+S N K L L C+ + G+ IA CR L++L+
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162
Query: 449 IQDCQI-SVEGY 459
+++ + V G+
Sbjct: 163 LRESDVDDVSGH 174
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 29/203 (14%)
Query: 52 VDDQGLSLIVSNCPQLIYL--------YLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQ 103
++D GL ++ S C L L + V LT+ G+ V C +L+ + + C Q
Sbjct: 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQ 383
Query: 104 VTDFGLYELAKLGATLR-------------YLSVAKCDQVSDAGLKVIARRCYKLRYLNA 150
+T+ L +A+ + YL++ D G I C LR L+
Sbjct: 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD----IGFGAIVEHCKDLRRLSL 439
Query: 151 RGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDR 210
++D + ++ L + SD G+ + C +++KL +R C D+
Sbjct: 440 --SGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDK 496
Query: 211 GVQCIAYYCRGLQQLNIQDCQIS 233
+ A ++ L + C +S
Sbjct: 497 ALLANASKLETMRSLWMSSCSVS 519
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 101/459 (22%), Positives = 177/459 (38%), Gaps = 88/459 (19%)
Query: 70 LYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFG--LYELAKLGATLRYLS--VA 125
L L +C T G+ + + C ++K L + + + G L+ELA+ +L L+ +
Sbjct: 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT 202
Query: 126 KCDQVSDAGLKVIARRCYKL---------------------------------------R 146
+ ++S L+ IAR C L +
Sbjct: 203 EFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262
Query: 147 YLN--------ARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKK 198
Y+N G + + + +L ++R LD+ + L + CPN++
Sbjct: 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322
Query: 199 LSLRQCDLVTDRGVQCIAYYCRGLQQLNIQ---DCQ--------ISVEGYRAVKKYCKRC 247
L R +++ DRG++ +A YC+ L++L I+ D Q +S G A+ + C+
Sbjct: 323 LETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE- 379
Query: 248 CIQISCLTASPXXXXXXXXXXXXCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKY 307
++ + S N+ D L L+ ++ L L V+ IG K
Sbjct: 380 -LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL-DREERITDLPLDNGVRSLLIGCKK 437
Query: 308 VPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKL 367
+ F L++ +TD GL + + +R++ + + SD GL +R C L
Sbjct: 438 LRRFAFYLRQ------GGLTDLGLSYIGQYSPNVRWMLLGYVGE-SDEGLMEFSRGCPNL 490
Query: 368 RYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAG--LRALAESCPNIKKLSLRQ 425
+ L RGC S+ AI LR L + S G L +A NI+ + R+
Sbjct: 491 QKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549
Query: 426 CDLVTDRG--------VQCIAYYCRGLQQLNIQDCQISV 456
V +G +AYY Q+ DC +V
Sbjct: 550 VPEVNQQGEIREMEHPAHILAYYSLAGQR---TDCPTTV 585
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 86/223 (38%), Gaps = 52/223 (23%)
Query: 60 IVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQ----------VTDFGL 109
++ CP L L R + D G++ + +C QLK L + V+ GL
Sbjct: 313 LIQKCPNLEVLETRNVI--GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL 370
Query: 110 YELAKLGATLRYLSVAKCDQVS--------------------------------DAGLKV 137
LA+ L Y++V D + D G++
Sbjct: 371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS 430
Query: 138 IARRCYKLR----YLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESC 193
+ C KLR YL G ++D ++ + + +R + +G SD GL + C
Sbjct: 431 LLIGCKKLRRFAFYLRQGG---LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC 487
Query: 194 PNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEG 236
PN++KL +R C ++R + L+ L +Q + S+ G
Sbjct: 488 PNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 128/321 (39%), Gaps = 35/321 (10%)
Query: 161 ITVLARSCTRLRALDIGKCDVSDAGLRALAES-CPNIKKLSLRQCDLVTDRGVQCIAYYC 219
+T ++ + +L+++ + VSD L LA++ +++ L L +C T G+ I +C
Sbjct: 104 VTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHC 163
Query: 220 RGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPXXXXXXXXXXXXCSNVDDQGL 279
R ++ L +++ S + + + + L + + + L
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHE-----------LAQHNTSLEVLNFYMTEFAKISPKDL 212
Query: 280 SLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSF---CSQLKELSVSDCTQVTDFGLYELAK 336
I NC L+ VK+ D I + F + L+E + D G+ E
Sbjct: 213 ETIARNCRSLV------SVKVGDFEILELVGFFKAAANLEEFCGGSLNE--DIGMPEKYM 264
Query: 337 LGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRAL 396
R L + + ++ ++R L+ ++D T++ + C L L
Sbjct: 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQK-CPNLEVL 323
Query: 397 DIGKCDVSDAGLRALAESCPNIKKLSL-RQCD---------LVTDRGVQCIAYYCRGLQQ 446
+ + D GL LA+ C +K+L + R D LV+ RG+ +A C+ L+
Sbjct: 324 ETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382
Query: 447 LNIQDCQISVEGYRAVKKYCK 467
+ + I+ E ++ Y K
Sbjct: 383 MAVYVSDITNESLESIGTYLK 403
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 48/238 (20%)
Query: 133 AGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD-VSDAGLRALAE 191
+ L I +C KL+ L+ G +SD + LA++ +R L++ C S+ L+ L
Sbjct: 108 STLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVR-LNLSGCSGFSEFALQTLLS 165
Query: 192 SCPNIKKLSLRQCDLVTDRGVQ-CIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQ 250
SC + +L+L C T++ VQ +A+ + QLN+ GYR
Sbjct: 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL-------SGYRK----------- 207
Query: 251 ISCLTASPXXXXXXXXXXXXCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPS 310
N+ LS +V CP L++L L V L + +
Sbjct: 208 ----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 245
Query: 311 FCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLR 368
+ L+ LS+S C + L EL ++ TL+ L V V D L+++ L+
Sbjct: 246 L-NYLQHLSLSRCYDIIPETLLELGEI-PTLKTLQVFGI--VPDGTLQLLKEALPHLQ 299
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 355 AGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD-VSDAGLRALAE 413
+ L I +C KL+ L+ G +SD + LA++ +R L++ C S+ L+ L
Sbjct: 108 STLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVR-LNLSGCSGFSEFALQTLLS 165
Query: 414 SCPNIKKLSLRQCDLVTDRGVQ-CIAYYCRGLQQLNIQDCQISVEGYR 460
SC + +L+L C T++ VQ +A+ + QLN+ GYR
Sbjct: 166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL-------SGYR 206
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 48/238 (20%)
Query: 133 AGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD-VSDAGLRALAE 191
+ L I +C KL+ L+ G +SD + LA++ +R L++ C S+ L+ L
Sbjct: 70 STLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVR-LNLSGCSGFSEFALQTLLS 127
Query: 192 SCPNIKKLSLRQCDLVTDRGVQ-CIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQ 250
SC + +L+L C T++ VQ +A+ + QLN+ GYR
Sbjct: 128 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS-------GYRK----------- 169
Query: 251 ISCLTASPXXXXXXXXXXXXCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPS 310
N+ LS +V CP L++L L V L + +
Sbjct: 170 ----------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ 207
Query: 311 FCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLR 368
+ L+ LS+S C + L EL ++ TL+ L V V D L+++ L+
Sbjct: 208 L-NYLQHLSLSRCYDIIPETLLELGEI-PTLKTLQVFGI--VPDGTLQLLKEALPHLQ 261
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 11/108 (10%)
Query: 355 AGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD-VSDAGLRALAE 413
+ L I +C KL+ L+ G +SD + LA++ +R L++ C S+ L+ L
Sbjct: 70 STLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVR-LNLSGCSGFSEFALQTLLS 127
Query: 414 SCPNIKKLSLRQCDLVTDRGVQ-CIAYYCRGLQQLNIQDCQISVEGYR 460
SC + +L+L C T++ VQ +A+ + QLN+ GYR
Sbjct: 128 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS-------GYR 168
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 115/274 (41%), Gaps = 65/274 (23%)
Query: 119 LRYLSVAKCDQVSDAGLKVIAR-------RCYKLRYLNARGCEAVSDDAITVLARSCTRL 171
L+ L+V+ D + +AG +V+ + + LR N A D ++A S L
Sbjct: 168 LKELTVSNND-IGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCGIVA-SQASL 225
Query: 172 RALDIGKCDVSDAGLRALAESCPN-------IKKLSLRQCDLVTD--RGVQCIAYYCRGL 222
R LD+G + DAG +AE CP +K L L +CD+ R + + L
Sbjct: 226 RELDLGSNGLGDAG---IAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETL 282
Query: 223 QQLNIQDCQISVEGYRAV------------KKYCKRCCIQISCLTASPXXXXXXXXXXXX 270
++L++ ++ EG R + + K C + +C
Sbjct: 283 KELSLAGNKLGDEGARLLCESLLQPGCQLESLWVKSCSLTAAC----------------- 325
Query: 271 CSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQ----LKELSVSDCTQV 326
C +V SL+++ L+ L L KL D GI+ + SQ L+ L + DC +V
Sbjct: 326 CQHV-----SLMLTQNKHLLELQLSS-NKLGDSGIQELCQALSQPGTTLRVLCLGDC-EV 378
Query: 327 TDFGLYELAKL---GATLRYLSVAKCDQVSDAGL 357
T+ G LA L +LR L ++ + V D G+
Sbjct: 379 TNSGCSSLASLLLANRSLRELDLSN-NCVGDPGV 411
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 341 LRYLSVAKCDQVSDAGLKVIAR-------RCYKLRYLNARGCEAVSDDAITVLARSCTRL 393
L+ L+V+ D + +AG +V+ + + LR N A D ++A S L
Sbjct: 168 LKELTVSNND-IGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCGIVA-SQASL 225
Query: 394 RALDIGKCDVSDAGLRALAESCPN-------IKKLSLRQCDLVTD--RGVQCIAYYCRGL 444
R LD+G + DAG +AE CP +K L L +CD+ R + + L
Sbjct: 226 RELDLGSNGLGDAG---IAELCPGLLSPASRLKTLWLWECDITASGCRDLCRVLQAKETL 282
Query: 445 QQLNIQDCQISVEGYR 460
++L++ ++ EG R
Sbjct: 283 KELSLAGNKLGDEGAR 298
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 128 DQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSD 183
D GL+V+A +C L +LN G + D + + L++LD+ C+V++
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 350 DQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSD 405
D GL+V+A +C L +LN G + D + + L++LD+ C+V++
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTN 127
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 160 AITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC 219
A+T +AR+ L G D +++GL+ L L+ C V ++ I YC
Sbjct: 777 AVTTIARALPGFPILATGGIDSAESGLQFLHSGA-----SVLQVCSAVQNQDFTVIQDYC 831
Query: 220 RGLQQL 225
GL+ L
Sbjct: 832 TGLKAL 837
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 382 AITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC 441
A+T +AR+ L G D +++GL+ L L+ C V ++ I YC
Sbjct: 777 AVTTIARALPGFPILATGGIDSAESGLQFLHSGA-----SVLQVCSAVQNQDFTVIQDYC 831
Query: 442 RGLQQL 447
GL+ L
Sbjct: 832 TGLKAL 837
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 160 AITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC 219
A+T +AR+ L G D +++GL+ L L+ C V ++ I YC
Sbjct: 777 AVTTIARALPGFPILATGGIDSAESGLQFLHSGA-----SVLQVCSAVQNQDFTVIQDYC 831
Query: 220 RGLQQL 225
GL+ L
Sbjct: 832 TGLKAL 837
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 382 AITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC 441
A+T +AR+ L G D +++GL+ L L+ C V ++ I YC
Sbjct: 777 AVTTIARALPGFPILATGGIDSAESGLQFLHSGA-----SVLQVCSAVQNQDFTVIQDYC 831
Query: 442 RGLQQL 447
GL+ L
Sbjct: 832 TGLKAL 837
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 135 LKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSD 183
L+V+A +C L++LN G + D + + L++LD+ C+V++
Sbjct: 85 LEVLAEKCPNLKHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTN 132
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 357 LKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSD 405
L+V+A +C L++LN G + D + + L++LD+ C+V++
Sbjct: 85 LEVLAEKCPNLKHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTN 132
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 90/413 (21%), Positives = 160/413 (38%), Gaps = 70/413 (16%)
Query: 74 RCVKLTDIGIKYVPSFCSQLKELSVSDC--TQVTDFGLYELAKLGATLRYLSVAKCDQVS 131
+C +L+D + Q + + + DC T+V + + L LS+ + +++
Sbjct: 7 QCEQLSDARWTELLPLIQQYEVVRLDDCGLTEVRCKDISSAVQANPALTELSL-RTNELG 65
Query: 132 DAGLKVIARRCY----KLRYLNARGCEAVSDDAITVLA---RSCTRLRALDIGKCDVSDA 184
D G+ ++ + K++ L+ + C +++ +L RS + LR L + + DA
Sbjct: 66 DGGVGLVLQGLQNPTCKIQKLSLQNC-GLTEAGCGILPGMLRSLSTLRELHLNDNPMGDA 124
Query: 185 GLRALAESCPN----IKKLSLRQCDLV------------------------TDRGVQCIA 216
GL+ L E + ++KL L C+L D +
Sbjct: 125 GLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVKADFKELVLSNNDLHEPGVR 184
Query: 217 YYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPXXXXXXXXXXXXCSNVDD 276
C+GL+ Q + +E CK C + AS N
Sbjct: 185 ILCQGLKDSACQLESLKLENCGITAANCKDLCDVV----ASKASLQELDLSSNKLGNAGI 240
Query: 277 QGL--SLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFC------SQLKELSVSDCTQVTD 328
L L++ +C +L L+L C DI + C LKELS++ ++ D
Sbjct: 241 AALCPGLLLPSC-KLRTLWLWEC----DITAEGCKDLCRVLRAKQSLKELSLAS-NELKD 294
Query: 329 FGL----YELAKLGATLRYLSVAKCDQVSDA-----GLKVIARRCYKLRYL-NARGCEAV 378
G L + G L L + C + + + +R +L+ N G E V
Sbjct: 295 EGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLLELQMSSNPLGDEGV 354
Query: 379 SDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTD 431
+ L++ T LR L +G CDV+++G +LA + SLR+ DL +
Sbjct: 355 QE-LCKALSQPDTVLRELWLGDCDVTNSGCSSLANVL--LANRSLRELDLSNN 404
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,134,097
Number of Sequences: 62578
Number of extensions: 390758
Number of successful extensions: 1013
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 934
Number of HSP's gapped (non-prelim): 53
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)