Query psy5339
Match_columns 479
No_of_seqs 278 out of 2793
Neff 11.3
Searched_HMMs 46136
Date Sat Aug 17 00:02:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341|consensus 100.0 4.1E-30 9E-35 222.6 9.9 339 91-471 110-456 (483)
2 KOG4341|consensus 100.0 2.3E-29 5E-34 218.0 10.0 318 92-451 139-461 (483)
3 PLN00113 leucine-rich repeat r 99.9 9.1E-24 2E-28 222.1 15.4 415 13-455 139-584 (968)
4 PLN00113 leucine-rich repeat r 99.9 4.3E-23 9.3E-28 217.1 16.2 417 15-460 70-493 (968)
5 KOG4194|consensus 99.9 3.3E-23 7.2E-28 187.3 0.9 367 17-426 55-426 (873)
6 KOG4194|consensus 99.8 2.2E-23 4.8E-28 188.5 -5.6 383 10-435 72-458 (873)
7 cd00116 LRR_RI Leucine-rich re 99.8 2.4E-17 5.2E-22 151.6 22.9 262 160-467 14-303 (319)
8 cd00116 LRR_RI Leucine-rich re 99.8 1.3E-16 2.9E-21 146.6 24.4 88 364-453 220-318 (319)
9 KOG0444|consensus 99.7 1.3E-19 2.9E-24 165.8 -6.8 365 39-453 7-373 (1255)
10 KOG2120|consensus 99.7 1.8E-16 3.9E-21 132.4 9.5 251 51-328 100-353 (419)
11 KOG2120|consensus 99.7 2.1E-16 4.6E-21 132.0 8.9 204 195-446 186-391 (419)
12 KOG1909|consensus 99.6 3E-15 6.5E-20 128.1 13.2 274 164-469 25-327 (382)
13 PLN03210 Resistant to P. syrin 99.6 3.1E-15 6.7E-20 158.2 11.9 106 284-402 799-904 (1153)
14 KOG1947|consensus 99.6 6.8E-15 1.5E-19 143.7 11.5 280 168-465 160-451 (482)
15 KOG0618|consensus 99.6 1.2E-16 2.5E-21 153.0 -1.3 84 10-101 41-124 (1081)
16 PLN03210 Resistant to P. syrin 99.6 1.9E-14 4.2E-19 152.2 13.6 313 15-379 590-907 (1153)
17 KOG1947|consensus 99.6 2.5E-14 5.3E-19 139.7 13.4 283 117-440 161-451 (482)
18 KOG0444|consensus 99.5 8.7E-17 1.9E-21 147.6 -5.4 370 13-431 6-377 (1255)
19 KOG0618|consensus 99.5 1.4E-15 3E-20 145.8 -0.4 102 16-127 23-124 (1081)
20 KOG1909|consensus 99.5 1.4E-12 3.1E-17 111.9 16.0 235 212-464 22-292 (382)
21 KOG3207|consensus 99.4 1.5E-13 3.3E-18 121.2 3.2 190 263-458 148-342 (505)
22 KOG3207|consensus 99.4 2.2E-13 4.8E-18 120.2 2.8 229 96-348 98-335 (505)
23 KOG0472|consensus 99.3 1.3E-14 2.8E-19 126.4 -7.0 292 140-462 225-548 (565)
24 PRK15387 E3 ubiquitin-protein 99.1 1.4E-10 3E-15 114.7 8.4 163 262-462 303-465 (788)
25 KOG2982|consensus 99.0 2.3E-10 5E-15 96.4 4.3 230 170-422 46-285 (418)
26 PRK15387 E3 ubiquitin-protein 99.0 4.9E-10 1.1E-14 110.9 7.2 84 313-411 382-465 (788)
27 KOG3665|consensus 99.0 8.4E-10 1.8E-14 108.7 7.9 159 262-426 123-285 (699)
28 KOG2982|consensus 99.0 1E-09 2.3E-14 92.5 6.3 213 196-456 47-263 (418)
29 KOG0472|consensus 98.9 3.4E-10 7.4E-15 99.3 0.9 82 15-105 207-288 (565)
30 COG5238 RNA1 Ran GTPase-activa 98.9 1.3E-07 2.9E-12 79.0 14.8 227 210-454 20-284 (388)
31 COG5238 RNA1 Ran GTPase-activa 98.8 3.8E-08 8.2E-13 82.2 11.1 91 168-271 29-130 (388)
32 KOG3665|consensus 98.8 1.3E-08 2.8E-13 100.5 9.6 156 39-200 122-281 (699)
33 KOG4237|consensus 98.7 1.4E-09 3.1E-14 95.3 -0.8 289 17-336 70-369 (498)
34 KOG4237|consensus 98.7 3E-09 6.6E-14 93.3 1.1 86 363-453 272-357 (498)
35 PRK15370 E3 ubiquitin-protein 98.7 5.5E-08 1.2E-12 97.1 10.0 237 169-464 199-437 (754)
36 PF14580 LRR_9: Leucine-rich r 98.6 1.7E-08 3.7E-13 81.5 2.0 103 15-126 20-122 (175)
37 KOG1259|consensus 98.6 3.3E-08 7.1E-13 83.8 2.4 126 287-427 284-410 (490)
38 PF14580 LRR_9: Leucine-rich r 98.5 1.9E-07 4.1E-12 75.5 4.9 115 4-126 31-149 (175)
39 PRK15370 E3 ubiquitin-protein 98.4 1.2E-06 2.7E-11 87.7 10.3 109 287-411 325-435 (754)
40 KOG4658|consensus 98.4 3.7E-07 8E-12 92.9 5.4 109 38-153 544-652 (889)
41 KOG1259|consensus 98.3 3.4E-07 7.3E-12 77.8 2.2 230 56-323 173-409 (490)
42 KOG4658|consensus 98.2 1.2E-06 2.7E-11 89.1 4.6 106 15-127 546-652 (889)
43 KOG3864|consensus 98.2 2.8E-06 6.2E-11 68.2 4.9 93 378-472 113-209 (221)
44 KOG3864|consensus 98.2 3.2E-06 6.9E-11 67.9 5.0 85 314-401 102-186 (221)
45 KOG0617|consensus 97.9 1.7E-07 3.7E-12 72.8 -5.6 162 4-180 20-184 (264)
46 PF13855 LRR_8: Leucine rich r 97.8 2E-06 4.3E-11 56.7 -1.7 61 391-454 1-61 (61)
47 KOG4308|consensus 97.6 2.7E-05 5.8E-10 74.0 1.9 28 215-242 110-137 (478)
48 KOG1859|consensus 97.5 5.9E-06 1.3E-10 79.0 -3.7 176 260-455 108-292 (1096)
49 PF13855 LRR_8: Leucine rich r 97.4 3.8E-05 8.2E-10 50.6 0.4 57 15-74 2-58 (61)
50 KOG4308|consensus 97.4 0.00011 2.5E-09 69.9 3.5 74 171-245 89-169 (478)
51 KOG1859|consensus 97.4 0.00012 2.7E-09 70.4 3.0 82 364-457 186-269 (1096)
52 KOG0617|consensus 97.3 3.4E-06 7.4E-11 65.7 -7.0 131 12-154 54-184 (264)
53 KOG1644|consensus 97.2 0.00022 4.8E-09 57.5 2.6 128 17-154 22-151 (233)
54 PF12799 LRR_4: Leucine Rich r 97.2 0.0005 1.1E-08 41.3 3.1 33 392-426 2-34 (44)
55 COG4886 Leucine-rich repeat (L 97.1 0.00038 8.2E-09 66.0 3.5 175 38-233 115-290 (394)
56 KOG2123|consensus 97.1 0.00013 2.8E-09 61.9 0.1 105 36-149 16-123 (388)
57 KOG2739|consensus 97.1 0.00036 7.8E-09 58.9 2.5 86 64-151 64-151 (260)
58 PF12799 LRR_4: Leucine Rich r 97.1 0.0008 1.7E-08 40.4 3.3 38 416-456 1-38 (44)
59 PRK15386 type III secretion pr 96.9 0.003 6.5E-08 58.2 7.4 35 262-300 73-107 (426)
60 KOG2739|consensus 96.9 0.0003 6.5E-09 59.3 0.5 87 364-452 64-153 (260)
61 PLN03150 hypothetical protein; 96.8 0.0023 4.9E-08 64.1 6.4 14 390-403 465-478 (623)
62 COG4886 Leucine-rich repeat (L 96.8 0.00099 2.1E-08 63.2 3.5 173 262-455 117-290 (394)
63 PLN03150 hypothetical protein; 96.7 0.003 6.6E-08 63.2 5.8 107 41-154 420-526 (623)
64 smart00367 LRR_CC Leucine-rich 96.6 0.0023 5.1E-08 33.3 2.6 23 415-437 1-23 (26)
65 KOG2123|consensus 96.5 0.00078 1.7E-08 57.3 0.7 97 363-465 39-139 (388)
66 PRK15386 type III secretion pr 96.5 0.0034 7.3E-08 57.9 4.6 134 262-426 53-187 (426)
67 PF13516 LRR_6: Leucine Rich r 96.5 0.0027 5.8E-08 32.4 2.2 23 441-463 1-23 (24)
68 smart00367 LRR_CC Leucine-rich 96.4 0.0043 9.4E-08 32.3 2.8 22 365-386 2-23 (26)
69 PF13516 LRR_6: Leucine Rich r 96.3 0.0036 7.8E-08 31.9 2.0 22 391-412 2-23 (24)
70 KOG4579|consensus 96.2 0.002 4.4E-08 48.7 1.1 116 340-462 28-143 (177)
71 KOG1644|consensus 96.0 0.0046 9.9E-08 50.2 2.5 107 339-453 42-151 (233)
72 KOG0531|consensus 95.8 0.00093 2E-08 63.6 -3.0 126 14-154 72-197 (414)
73 smart00368 LRR_RI Leucine rich 95.7 0.019 4.1E-07 30.5 3.3 25 391-415 2-26 (28)
74 smart00368 LRR_RI Leucine rich 95.6 0.019 4.2E-07 30.5 2.9 25 442-466 2-26 (28)
75 KOG0531|consensus 95.5 0.002 4.2E-08 61.4 -1.8 107 9-127 90-196 (414)
76 KOG4579|consensus 95.2 0.0082 1.8E-07 45.6 1.0 105 314-426 28-133 (177)
77 KOG3763|consensus 93.7 0.12 2.5E-06 49.1 5.1 89 358-448 211-307 (585)
78 KOG3763|consensus 93.7 0.13 2.8E-06 48.8 5.3 89 332-422 211-307 (585)
79 PF13504 LRR_7: Leucine rich r 91.3 0.14 3.1E-06 23.4 1.3 13 443-455 2-14 (17)
80 KOG0532|consensus 90.5 0.028 6.1E-07 53.2 -2.8 13 62-74 118-130 (722)
81 KOG0532|consensus 89.9 0.13 2.9E-06 48.9 1.0 100 16-127 145-244 (722)
82 PF00560 LRR_1: Leucine Rich R 81.2 0.95 2.1E-05 22.2 1.1 13 443-455 1-13 (22)
83 smart00369 LRR_TYP Leucine-ric 69.1 3.7 8E-05 21.0 1.5 16 442-457 2-17 (26)
84 smart00370 LRR Leucine-rich re 69.1 3.7 8E-05 21.0 1.5 16 442-457 2-17 (26)
85 KOG3735|consensus 66.7 25 0.00054 31.8 6.8 88 354-442 187-280 (353)
86 smart00365 LRR_SD22 Leucine-ri 66.4 4.8 0.0001 20.8 1.5 14 442-455 2-15 (26)
87 PF07723 LRR_2: Leucine Rich R 58.4 7.5 0.00016 20.1 1.4 10 393-402 2-11 (26)
88 smart00364 LRR_BAC Leucine-ric 51.3 8.6 0.00019 19.9 0.9 14 442-455 2-15 (26)
89 KOG3735|consensus 43.7 75 0.0016 28.9 5.9 80 112-191 193-277 (353)
90 PF07735 FBA_2: F-box associat 30.0 1.6E+02 0.0036 19.3 6.8 54 365-423 11-69 (70)
91 PF13306 LRR_5: Leucine rich r 20.5 66 0.0014 24.3 1.7 13 62-74 32-44 (129)
No 1
>KOG4341|consensus
Probab=99.96 E-value=4.1e-30 Score=222.59 Aligned_cols=339 Identities=29% Similarity=0.589 Sum_probs=237.0
Q ss_pred CCCcEEEeecCcc-cCcHHHHHHHHh-CCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhc
Q psy5339 91 SQLKELSVSDCTQ-VTDFGLYELAKL-GATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSC 168 (479)
Q Consensus 91 ~~L~~L~l~~~~~-~~~~~~~~l~~~-~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 168 (479)
.+-+++++..... +....+..+.+. ...|+.|.+++|..+.+..+..+...||++++|.+.+|..+++.....+.+.|
T Consensus 110 ~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C 189 (483)
T KOG4341|consen 110 SCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYC 189 (483)
T ss_pred ccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhc
Confidence 4556666653211 122222333322 35688888888888888888888888888888888888888888888888888
Q ss_pred CccceEEcCCc-ccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccc
Q psy5339 169 TRLRALDIGKC-DVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRC 247 (479)
Q Consensus 169 ~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 247 (479)
++|+.|.+..| .+++..++.+.+.|++|+.++++.|+.+...++..+..++..++.+...||
T Consensus 190 ~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC----------------- 252 (483)
T KOG4341|consen 190 RKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC----------------- 252 (483)
T ss_pred chhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc-----------------
Confidence 88888888885 477777887888888888888888887777777777766666665555554
Q ss_pred cccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCC
Q psy5339 248 CIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVT 327 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~ 327 (479)
.....+.+..+...++.+.++++..|+.+++.++..+...+..|+.|+.++|..++
T Consensus 253 ------------------------~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~ 308 (483)
T KOG4341|consen 253 ------------------------LELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT 308 (483)
T ss_pred ------------------------ccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc
Confidence 44555555555556666666666666677776666666666677777777776677
Q ss_pred cHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCC-CCHH
Q psy5339 328 DFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD-VSDA 406 (479)
Q Consensus 328 ~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~ 406 (479)
+..+..+...+++|+.+.++.|.++++.++..+..+++.|+.+++.+|..+++.++..++.+||.|+++.+++|. ++|+
T Consensus 309 d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~ 388 (483)
T KOG4341|consen 309 DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE 388 (483)
T ss_pred hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhh
Confidence 766666666667777777777777777777777777777777777777766666666676677777777777776 6666
Q ss_pred HHHHHHh---hCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccc-cChHHHHHHHHhhhhcce
Q psy5339 407 GLRALAE---SCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQ-ISVEGYRAVKKYCKRCII 471 (479)
Q Consensus 407 ~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~~~i 471 (479)
++..+.. ....|+.+++.+|+.+++..++.+ ..|+.|+.+++.+|+ ++.+++++++..+|+..|
T Consensus 389 gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 389 GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL-SICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred hhhhhhhccccccccceeeecCCCCchHHHHHHH-hhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 6665553 345577777777776666555544 456777777777775 777777777777776665
No 2
>KOG4341|consensus
Probab=99.96 E-value=2.3e-29 Score=218.00 Aligned_cols=318 Identities=30% Similarity=0.554 Sum_probs=223.7
Q ss_pred CCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCcc
Q psy5339 92 QLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRL 171 (479)
Q Consensus 92 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 171 (479)
.|++|.+.||..+.+.....+...+|++++|.+.+|..+++.....+.+.|++|+++++..|..+++..+..+.+.|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45555555554444444555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ceEEcCCcc-cCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhcccccc
Q psy5339 172 RALDIGKCD-VSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQ 250 (479)
Q Consensus 172 ~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~ 250 (479)
++++++++. +...+++.+.+++..++.+...+|.....+.+..+...++.+.++++..|
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c-------------------- 278 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHC-------------------- 278 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhh--------------------
Confidence 555555553 44555666666666677776667766655656555555555544444443
Q ss_pred ccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHH
Q psy5339 251 ISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFG 330 (479)
Q Consensus 251 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 330 (479)
..+++++.+.+...+..|+.|..++|..+++..+..+.+.+++|+.|.+..|.++++.+
T Consensus 279 ---------------------~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 279 ---------------------NQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred ---------------------ccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh
Confidence 35666666666667778888888888888888888887777888888888888888888
Q ss_pred HHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHH---HhCCCCcEEEecCCC-CCHH
Q psy5339 331 LYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLA---RSCTRLRALDIGKCD-VSDA 406 (479)
Q Consensus 331 ~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~-i~~~ 406 (479)
+..+...++.|+.+++..|..+.+..+..++.+|+.|+.+.++.|..++|+++..+. .....|..+.+++|+ +++.
T Consensus 338 ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 338 FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 888888888888888888888888778888888899999999988888888776654 245688999999998 6677
Q ss_pred HHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecc
Q psy5339 407 GLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQD 451 (479)
Q Consensus 407 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 451 (479)
.++.+.. |++|+++++.+|..++..++..+..++|+++..-+..
T Consensus 418 ~Le~l~~-c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 418 TLEHLSI-CRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred HHHHHhh-CcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 7777765 9999999999999999999999999999988776554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=9.1e-24 Score=222.13 Aligned_cols=415 Identities=16% Similarity=0.070 Sum_probs=191.4
Q ss_pred cchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCC
Q psy5339 13 QLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQ 92 (479)
Q Consensus 13 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 92 (479)
...|++|++++|..... ....++.+++|++|++++| .+.. .++..+.++++|++|++++| .+.... +.....+++
T Consensus 139 l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n-~l~~-~~p~~~~~l~~L~~L~L~~n-~l~~~~-p~~l~~l~~ 213 (968)
T PLN00113 139 IPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGN-VLVG-KIPNSLTNLTSLEFLTLASN-QLVGQI-PRELGQMKS 213 (968)
T ss_pred cCCCCEEECcCCccccc-CChHHhcCCCCCEEECccC-cccc-cCChhhhhCcCCCeeeccCC-CCcCcC-ChHHcCcCC
Confidence 45678888888854322 2233667788888888876 3322 23344567778888888774 444322 222234677
Q ss_pred CcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccc
Q psy5339 93 LKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLR 172 (479)
Q Consensus 93 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 172 (479)
|++|+++++ .++.. +......+++|++|+++++. +.. .++.....+++|+.|+++++.... .....+ ..+++|+
T Consensus 214 L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l-~~l~~L~ 287 (968)
T PLN00113 214 LKWIYLGYN-NLSGE-IPYEIGGLTSLNHLDLVYNN-LTG-PIPSSLGNLKNLQYLFLYQNKLSG-PIPPSI-FSLQKLI 287 (968)
T ss_pred ccEEECcCC-ccCCc-CChhHhcCCCCCEEECcCce-ecc-ccChhHhCCCCCCEEECcCCeeec-cCchhH-hhccCcC
Confidence 777777763 33321 12223445667777776542 211 122223455666666666543211 111111 2235566
Q ss_pred eEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhc------c
Q psy5339 173 ALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCK------R 246 (479)
Q Consensus 173 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~------~ 246 (479)
+|++++|.+.......+ ..+++|+.|+++++. +.. ..+..+..+++|+.|++++|.+.......+..... .
T Consensus 288 ~L~Ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~-~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls 364 (968)
T PLN00113 288 SLDLSDNSLSGEIPELV-IQLQNLEILHLFSNN-FTG-KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364 (968)
T ss_pred EEECcCCeeccCCChhH-cCCCCCcEEECCCCc-cCC-cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECC
Confidence 66665555433221111 234555555555442 211 11122234455555555554433221111111000 0
Q ss_pred ccc-------------cccc-----------cc-cCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccC
Q psy5339 247 CCI-------------QISC-----------LT-ASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLT 301 (479)
Q Consensus 247 ~~~-------------~~~~-----------~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 301 (479)
.+. .+.. ++ .....++|+.|+++++. +..... ..+..++.|+.|++++ +.+.
T Consensus 365 ~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~-l~~~~p-~~~~~l~~L~~L~Ls~-N~l~ 441 (968)
T PLN00113 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS-FSGELP-SEFTKLPLVYFLDISN-NNLQ 441 (968)
T ss_pred CCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE-eeeECC-hhHhcCCCCCEEECcC-Cccc
Confidence 000 0000 00 00112234444444321 111111 1122344444444444 2232
Q ss_pred cchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHH
Q psy5339 302 DIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDD 381 (479)
Q Consensus 302 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 381 (479)
......+ ..+++|+.|++++| .+... +.... ..++|+.|+++++ .+.......+ ..+++|+.|++++|.....
T Consensus 442 ~~~~~~~-~~l~~L~~L~L~~n-~~~~~-~p~~~-~~~~L~~L~ls~n-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~- 514 (968)
T PLN00113 442 GRINSRK-WDMPSLQMLSLARN-KFFGG-LPDSF-GSKRLENLDLSRN-QFSGAVPRKL-GSLSELMQLKLSENKLSGE- 514 (968)
T ss_pred CccChhh-ccCCCCcEEECcCc-eeeee-cCccc-ccccceEEECcCC-ccCCccChhh-hhhhccCEEECcCCcceee-
Confidence 2211111 12355555555554 22111 00000 1246666766663 3332221222 2456777788777643211
Q ss_pred HHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccC
Q psy5339 382 AITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 382 ~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 455 (479)
+......+++|++|++++|.++......+. .+++|+.|++++|. ++... ...+..+++|+.|++++|+++
T Consensus 515 -~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~-l~~~~-p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 515 -IPDELSSCKKLVSLDLSHNQLSGQIPASFS-EMPVLSQLDLSQNQ-LSGEI-PKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred -CChHHcCccCCCEEECCCCcccccCChhHh-CcccCCEEECCCCc-ccccC-ChhHhcCcccCEEeccCCcce
Confidence 111223577888888888877654444443 47888888888884 43322 222345678888888888754
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=4.3e-23 Score=217.08 Aligned_cols=417 Identities=15% Similarity=0.068 Sum_probs=209.6
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.++.||++++.+... ....+..+++|++|++++| .+.......++..+++|++|+++++ .++... + ...+++|+
T Consensus 70 ~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~-p--~~~l~~L~ 143 (968)
T PLN00113 70 RVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSI-P--RGSIPNLE 143 (968)
T ss_pred cEEEEEecCCCcccc-CChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCC-cccccc-C--ccccCCCC
Confidence 466777776643322 2234566777777777776 3432222334446777777777773 443211 1 12356777
Q ss_pred EEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceE
Q psy5339 95 ELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRAL 174 (479)
Q Consensus 95 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 174 (479)
+|+++++ .++.. +......+++|++|+++++. +.. .++.....+++|++|+++++.... .... ....+++|+.|
T Consensus 144 ~L~Ls~n-~~~~~-~p~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~~L~~L~L~~n~l~~-~~p~-~l~~l~~L~~L 217 (968)
T PLN00113 144 TLDLSNN-MLSGE-IPNDIGSFSSLKVLDLGGNV-LVG-KIPNSLTNLTSLEFLTLASNQLVG-QIPR-ELGQMKSLKWI 217 (968)
T ss_pred EEECcCC-ccccc-CChHHhcCCCCCEEECccCc-ccc-cCChhhhhCcCCCeeeccCCCCcC-cCCh-HHcCcCCccEE
Confidence 7777763 33321 22223445677777776642 211 112223456677777776654221 1111 12334667777
Q ss_pred EcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhc------ccc
Q psy5339 175 DIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCK------RCC 248 (479)
Q Consensus 175 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~------~~~ 248 (479)
++++|.+.......+ ..+++|+.|+++++. +.. .++..+..+++|+.|++++|.+.......+..... ..+
T Consensus 218 ~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 218 YLGYNNLSGEIPYEI-GGLTSLNHLDLVYNN-LTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred ECcCCccCCcCChhH-hcCCCCCEEECcCce-ecc-ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 777666544322222 335667777776652 221 22333445666777777666654322222211100 000
Q ss_pred ccccccc-cCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCC
Q psy5339 249 IQISCLT-ASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVT 327 (479)
Q Consensus 249 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~ 327 (479)
.-...++ .....++|++|+++++ .+..... .....+++|+.|++++ +.+.......+ ..+++|+.|++++| .++
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n-~~~~~~~-~~~~~l~~L~~L~L~~-n~l~~~~p~~l-~~~~~L~~L~Ls~n-~l~ 369 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSN-NFTGKIP-VALTSLPRLQVLQLWS-NKFSGEIPKNL-GKHNNLTVLDLSTN-NLT 369 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCC-ccCCcCC-hhHhcCCCCCEEECcC-CCCcCcCChHH-hCCCCCcEEECCCC-eeE
Confidence 0000000 0122345666666653 2222111 2224566666666666 33432222222 22356666666664 333
Q ss_pred cHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHH
Q psy5339 328 DFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAG 407 (479)
Q Consensus 328 ~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~ 407 (479)
......+ ...++|+.|+++++ .+....... ...+++|+.|++.+|.. +.. +......+++|+.|++++|.++...
T Consensus 370 ~~~p~~~-~~~~~L~~L~l~~n-~l~~~~p~~-~~~~~~L~~L~L~~n~l-~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~ 444 (968)
T PLN00113 370 GEIPEGL-CSSGNLFKLILFSN-SLEGEIPKS-LGACRSLRRVRLQDNSF-SGE-LPSEFTKLPLVYFLDISNNNLQGRI 444 (968)
T ss_pred eeCChhH-hCcCCCCEEECcCC-EecccCCHH-HhCCCCCCEEECcCCEe-eeE-CChhHhcCCCCCEEECcCCcccCcc
Confidence 2211222 22346677777663 333222222 23568888888888653 221 1222235788888888888876543
Q ss_pred HHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccChHHHH
Q psy5339 408 LRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYR 460 (479)
Q Consensus 408 ~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 460 (479)
...+. .+++|+.|++++|.. ...... . ...++|+.|++++|+++.....
T Consensus 445 ~~~~~-~l~~L~~L~L~~n~~-~~~~p~-~-~~~~~L~~L~ls~n~l~~~~~~ 493 (968)
T PLN00113 445 NSRKW-DMPSLQMLSLARNKF-FGGLPD-S-FGSKRLENLDLSRNQFSGAVPR 493 (968)
T ss_pred Chhhc-cCCCCcEEECcCcee-eeecCc-c-cccccceEEECcCCccCCccCh
Confidence 33333 488899999999843 321111 1 1347899999999987754333
No 5
>KOG4194|consensus
Probab=99.86 E-value=3.3e-23 Score=187.31 Aligned_cols=367 Identities=19% Similarity=0.191 Sum_probs=167.8
Q ss_pred cccCCCCCcccccc--cccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 17 QFLDLTDCSCIQIS--CLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 17 ~~L~ls~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
+.||.++..+..++ .+..+. ...-+.||+++| .+.+..+. .+.++|+|+++++.. +.++. ++.+.+...+|+
T Consensus 55 ~lldcs~~~lea~~~~~l~g~l-p~~t~~LdlsnN-kl~~id~~-~f~nl~nLq~v~l~~-N~Lt~--IP~f~~~sghl~ 128 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFL-PSQTQTLDLSNN-KLSHIDFE-FFYNLPNLQEVNLNK-NELTR--IPRFGHESGHLE 128 (873)
T ss_pred eeeecCccccccccccccCCcC-ccceeeeecccc-ccccCcHH-HHhcCCcceeeeecc-chhhh--ccccccccccee
Confidence 55666666433321 111111 134456888887 55555543 347788888888887 56653 556666667788
Q ss_pred EEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceE
Q psy5339 95 ELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRAL 174 (479)
Q Consensus 95 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 174 (479)
+|++.+ +.|+...-.++ ...|.|++|+++.. .+.......+. .-.++++|++.++. ++.-....| ..+.+|..|
T Consensus 129 ~L~L~~-N~I~sv~se~L-~~l~alrslDLSrN-~is~i~~~sfp-~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tl 202 (873)
T KOG4194|consen 129 KLDLRH-NLISSVTSEEL-SALPALRSLDLSRN-LISEIPKPSFP-AKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTL 202 (873)
T ss_pred EEeeec-cccccccHHHH-HhHhhhhhhhhhhc-hhhcccCCCCC-CCCCceEEeecccc-ccccccccc-cccchheee
Confidence 888886 45555433333 23366777777652 22221111111 12456666665542 222111111 122466666
Q ss_pred EcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhcccccccccc
Q psy5339 175 DIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCL 254 (479)
Q Consensus 175 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (479)
.|+.|+++.-....+ +.+|+|+.|++..+. +.... ..-+..+++|+.|.+..|++....-..
T Consensus 203 kLsrNrittLp~r~F-k~L~~L~~LdLnrN~-irive-~ltFqgL~Sl~nlklqrN~I~kL~DG~--------------- 264 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSF-KRLPKLESLDLNRNR-IRIVE-GLTFQGLPSLQNLKLQRNDISKLDDGA--------------- 264 (873)
T ss_pred ecccCcccccCHHHh-hhcchhhhhhccccc-eeeeh-hhhhcCchhhhhhhhhhcCcccccCcc---------------
Confidence 666666554333222 335666666665542 21110 111335566666666665533110000
Q ss_pred ccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHH
Q psy5339 255 TASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYEL 334 (479)
Q Consensus 255 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 334 (479)
...+.++++|++..+ .+....-. +..++..|+.|+++. +.+........ .++++|+.|+++.+ .++......+
T Consensus 265 --Fy~l~kme~l~L~~N-~l~~vn~g-~lfgLt~L~~L~lS~-NaI~rih~d~W-sftqkL~~LdLs~N-~i~~l~~~sf 337 (873)
T KOG4194|consen 265 --FYGLEKMEHLNLETN-RLQAVNEG-WLFGLTSLEQLDLSY-NAIQRIHIDSW-SFTQKLKELDLSSN-RITRLDEGSF 337 (873)
T ss_pred --eeeecccceeecccc-hhhhhhcc-cccccchhhhhccch-hhhheeecchh-hhcccceeEecccc-ccccCChhHH
Confidence 011223555555542 22221111 123455566666655 44444433333 12355666666552 3332221111
Q ss_pred HHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCC---ccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHH
Q psy5339 335 AKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEA---VSDDAITVLARSCTRLRALDIGKCDVSDAGLRAL 411 (479)
Q Consensus 335 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l 411 (479)
... ..|++|.++. +.++...-.. ...+.+|++|+++.+.. +.| .......+++|+.|++.+|++....-.++
T Consensus 338 ~~L-~~Le~LnLs~-Nsi~~l~e~a-f~~lssL~~LdLr~N~ls~~IED--aa~~f~gl~~LrkL~l~gNqlk~I~krAf 412 (873)
T KOG4194|consen 338 RVL-SQLEELNLSH-NSIDHLAEGA-FVGLSSLHKLDLRSNELSWCIED--AAVAFNGLPSLRKLRLTGNQLKSIPKRAF 412 (873)
T ss_pred HHH-HHhhhhcccc-cchHHHHhhH-HHHhhhhhhhcCcCCeEEEEEec--chhhhccchhhhheeecCceeeecchhhh
Confidence 111 1455555554 3333221111 11334555555554321 122 11111235555555555555444333333
Q ss_pred HhhCCCCcEEeccCC
Q psy5339 412 AESCPNIKKLSLRQC 426 (479)
Q Consensus 412 ~~~~~~L~~L~l~~~ 426 (479)
. ++++|+.|+|.+|
T Consensus 413 s-gl~~LE~LdL~~N 426 (873)
T KOG4194|consen 413 S-GLEALEHLDLGDN 426 (873)
T ss_pred c-cCcccceecCCCC
Confidence 3 2555555555555
No 6
>KOG4194|consensus
Probab=99.84 E-value=2.2e-23 Score=188.45 Aligned_cols=383 Identities=16% Similarity=0.161 Sum_probs=253.0
Q ss_pred Ccccchh--cccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhh
Q psy5339 10 SPTQLLL--QFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVP 87 (479)
Q Consensus 10 ~~~~~~L--~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 87 (479)
++..... ++||+++|.+..+. +..|.++++|+.+++..| .++. ++.+.....+|+.|++.+ +.++...-+.+.
T Consensus 72 l~g~lp~~t~~LdlsnNkl~~id-~~~f~nl~nLq~v~l~~N-~Lt~--IP~f~~~sghl~~L~L~~-N~I~sv~se~L~ 146 (873)
T KOG4194|consen 72 LKGFLPSQTQTLDLSNNKLSHID-FEFFYNLPNLQEVNLNKN-ELTR--IPRFGHESGHLEKLDLRH-NLISSVTSEELS 146 (873)
T ss_pred cCCcCccceeeeeccccccccCc-HHHHhcCCcceeeeeccc-hhhh--cccccccccceeEEeeec-cccccccHHHHH
Confidence 4445544 56999999665553 445889999999999997 4533 555555567899999999 677776555554
Q ss_pred hcCCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHh
Q psy5339 88 SFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARS 167 (479)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 167 (479)
.++.|+.||++. +.++...-..+.+ .+++++|++.+ +.+++.+...+ ..+.+|..|.++.+. ++.-. ...++.
T Consensus 147 -~l~alrslDLSr-N~is~i~~~sfp~-~~ni~~L~La~-N~It~l~~~~F-~~lnsL~tlkLsrNr-ittLp-~r~Fk~ 219 (873)
T KOG4194|consen 147 -ALPALRSLDLSR-NLISEIPKPSFPA-KVNIKKLNLAS-NRITTLETGHF-DSLNSLLTLKLSRNR-ITTLP-QRSFKR 219 (873)
T ss_pred -hHhhhhhhhhhh-chhhcccCCCCCC-CCCceEEeecc-ccccccccccc-cccchheeeecccCc-ccccC-HHHhhh
Confidence 468899999998 5565543333322 36799999987 45554433332 345689999998753 33322 334455
Q ss_pred cCccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccc
Q psy5339 168 CTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRC 247 (479)
Q Consensus 168 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 247 (479)
+++|+.|+|..|++.....-.+ +++++|+.|.+..+. +.... ...+-.+.++++|+++.|.+....-..+
T Consensus 220 L~~L~~LdLnrN~irive~ltF-qgL~Sl~nlklqrN~-I~kL~-DG~Fy~l~kme~l~L~~N~l~~vn~g~l------- 289 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEGLTF-QGLPSLQNLKLQRND-ISKLD-DGAFYGLEKMEHLNLETNRLQAVNEGWL------- 289 (873)
T ss_pred cchhhhhhccccceeeehhhhh-cCchhhhhhhhhhcC-ccccc-Ccceeeecccceeecccchhhhhhcccc-------
Confidence 7999999999998766433333 558999999998763 32110 1112367899999999998654322222
Q ss_pred cccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCC
Q psy5339 248 CIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVT 327 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~ 327 (479)
...+.|+.|+++. +.+.......+ ..+++|+.|+++. +.++......+... ..|+.|.++.+ .++
T Consensus 290 ----------fgLt~L~~L~lS~-NaI~rih~d~W-sftqkL~~LdLs~-N~i~~l~~~sf~~L-~~Le~LnLs~N-si~ 354 (873)
T KOG4194|consen 290 ----------FGLTSLEQLDLSY-NAIQRIHIDSW-SFTQKLKELDLSS-NRITRLDEGSFRVL-SQLEELNLSHN-SID 354 (873)
T ss_pred ----------cccchhhhhccch-hhhheeecchh-hhcccceeEeccc-cccccCChhHHHHH-HHhhhhccccc-chH
Confidence 2334588899988 45555555555 4589999999999 78887766666443 89999999994 665
Q ss_pred cHHHHHHHHcCCCccEEeccccCCCCh--hHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCH
Q psy5339 328 DFGLYELAKLGATLRYLSVAKCDQVSD--AGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSD 405 (479)
Q Consensus 328 ~~~~~~l~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 405 (479)
...-.. .....+|++|+++. +.+.. ++.......+++|++|++.|+. +....-.. ...+++|++|+|.+|.|..
T Consensus 355 ~l~e~a-f~~lssL~~LdLr~-N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krA-fsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 355 HLAEGA-FVGLSSLHKLDLRS-NELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRA-FSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred HHHhhH-HHHhhhhhhhcCcC-CeEEEEEecchhhhccchhhhheeecCce-eeecchhh-hccCcccceecCCCCccee
Confidence 432222 23345899999987 44321 1222333468999999999964 33322222 2368999999999999766
Q ss_pred HHHHHHHhhCCCCcEEeccCCcccchhhHH
Q psy5339 406 AGLRALAESCPNIKKLSLRQCDLVTDRGVQ 435 (479)
Q Consensus 406 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 435 (479)
....++.. + +|++|.+..-..+-|..+.
T Consensus 431 Iq~nAFe~-m-~Lk~Lv~nSssflCDCql~ 458 (873)
T KOG4194|consen 431 IQPNAFEP-M-ELKELVMNSSSFLCDCQLK 458 (873)
T ss_pred eccccccc-c-hhhhhhhcccceEEeccHH
Confidence 55555443 3 7888877655444444333
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=2.4e-17 Score=151.57 Aligned_cols=262 Identities=21% Similarity=0.285 Sum_probs=138.7
Q ss_pred HHHHHHHhcCccceEEcCCcccCHHHHHHHH---HcCCCCcEEecCCCCCcC--h---HHHHHHHhhCCCCcEEEccCcc
Q psy5339 160 AITVLARSCTRLRALDIGKCDVSDAGLRALA---ESCPNIKKLSLRQCDLVT--D---RGVQCIAYYCRGLQQLNIQDCQ 231 (479)
Q Consensus 160 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~--~---~~~~~~~~~~~~L~~L~l~~~~ 231 (479)
.+..++....+|++|++.++.+++.....+. ...++++.++++++. +. . ..+...+..+++|++|++++|.
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 3344444456677777777777665443333 334557777776542 22 1 1222333345566666666666
Q ss_pred cchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhcccc--
Q psy5339 232 ISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVP-- 309 (479)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-- 309 (479)
+.......+. .+... ++|+.|++++| .+.+.+...+.
T Consensus 93 ~~~~~~~~~~---------------------------------------~l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~ 131 (319)
T cd00116 93 LGPDGCGVLE---------------------------------------SLLRS-SSLQELKLNNN-GLGDRGLRLLAKG 131 (319)
T ss_pred CChhHHHHHH---------------------------------------HHhcc-CcccEEEeeCC-ccchHHHHHHHHH
Confidence 4432222221 11122 33555555552 33332222211
Q ss_pred -ccC-CCCcEEeccCCCCCCcHHHHH---HHHcCCCccEEeccccCCCChhHHHHHHH---hCCCccEEeccCCCCccHH
Q psy5339 310 -SFC-SQLKELSVSDCTQVTDFGLYE---LAKLGATLRYLSVAKCDQVSDAGLKVIAR---RCYKLRYLNARGCEAVSDD 381 (479)
Q Consensus 310 -~~~-~~L~~L~l~~~~~~~~~~~~~---l~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~ 381 (479)
..+ ++|+.|++++| .++..+... .....++|++|++++ +.+++.++..+.. .+++|+.|++++|. +++.
T Consensus 132 l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~ 208 (319)
T cd00116 132 LKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLAN-NGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDE 208 (319)
T ss_pred HHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcC-CCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChH
Confidence 112 56666666664 444332222 222334666777666 3455444444332 23477777777753 4443
Q ss_pred HHHH---HHHhCCCCcEEEecCCCCCHHHHHHHHhhC----CCCcEEeccCCcccchhhHHHH---HHcCccccEEEecc
Q psy5339 382 AITV---LARSCTRLRALDIGKCDVSDAGLRALAESC----PNIKKLSLRQCDLVTDRGVQCI---AYYCRGLQQLNIQD 451 (479)
Q Consensus 382 ~~~~---l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~----~~L~~L~l~~~~~l~~~~~~~~---~~~~~~L~~L~l~~ 451 (479)
+... ....+++|++|++++|++++.++..+...+ +.|++|++++| .+++.+...+ ...+++|+.+++++
T Consensus 209 ~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 3332 233466777777777777776666666543 57777777777 5655444333 33445777778888
Q ss_pred cccChHHHHHHHHhhh
Q psy5339 452 CQISVEGYRAVKKYCK 467 (479)
Q Consensus 452 ~~i~~~~~~~l~~~~~ 467 (479)
|.+++++.+.+.+..+
T Consensus 288 N~l~~~~~~~~~~~~~ 303 (319)
T cd00116 288 NKFGEEGAQLLAESLL 303 (319)
T ss_pred CCCcHHHHHHHHHHHh
Confidence 7777776666655443
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=1.3e-16 Score=146.60 Aligned_cols=88 Identities=26% Similarity=0.320 Sum_probs=44.0
Q ss_pred CCCccEEeccCCCCccHHHHHHHHHhC----CCCcEEEecCCCCCHHHHHHHHh---hCCCCcEEeccCCcccchhhHHH
Q psy5339 364 CYKLRYLNARGCEAVSDDAITVLARSC----TRLRALDIGKCDVSDAGLRALAE---SCPNIKKLSLRQCDLVTDRGVQC 436 (479)
Q Consensus 364 ~~~L~~L~l~~~~~~~~~~~~~l~~~~----~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~ 436 (479)
+++|++|++++|. +++.++..+...+ +.|++|++++|.+++.+...+.+ .+++|+++++++| .+++.+...
T Consensus 220 ~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~~~~~ 297 (319)
T cd00116 220 LKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEEGAQL 297 (319)
T ss_pred cCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHHHHHH
Confidence 4555555555542 4444444433332 46666666666665544444433 2345666666666 445443332
Q ss_pred HH---HcC-ccccEEEecccc
Q psy5339 437 IA---YYC-RGLQQLNIQDCQ 453 (479)
Q Consensus 437 ~~---~~~-~~L~~L~l~~~~ 453 (479)
+. ... +.|+.+++.+++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 298 LAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHhhcCCchhhcccCCCC
Confidence 22 222 456666666554
No 9
>KOG0444|consensus
Probab=99.70 E-value=1.3e-19 Score=165.75 Aligned_cols=365 Identities=16% Similarity=0.155 Sum_probs=177.8
Q ss_pred cccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHhCCC
Q psy5339 39 LLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGAT 118 (479)
Q Consensus 39 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 118 (479)
+-.+-+|+++| .+....++.-+..+.+++-|.+.. +++.. ++.-...+.+|++|.++.+ ++.. +..-...+|.
T Consensus 7 pFVrGvDfsgN-DFsg~~FP~~v~qMt~~~WLkLnr-t~L~~--vPeEL~~lqkLEHLs~~HN-~L~~--vhGELs~Lp~ 79 (1255)
T KOG0444|consen 7 PFVRGVDFSGN-DFSGDRFPHDVEQMTQMTWLKLNR-TKLEQ--VPEELSRLQKLEHLSMAHN-QLIS--VHGELSDLPR 79 (1255)
T ss_pred ceeecccccCC-cCCCCcCchhHHHhhheeEEEech-hhhhh--ChHHHHHHhhhhhhhhhhh-hhHh--hhhhhccchh
Confidence 33444555554 344344455555566666666655 34432 2222233556666666653 2221 1112233455
Q ss_pred ccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHcCCCCcE
Q psy5339 119 LRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKK 198 (479)
Q Consensus 119 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 198 (479)
|+++.++. +++...+++.-.-++..|+.|+++.+..- +....+ ...+++-.|++++|+|....-. +.-++..|-.
T Consensus 80 LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLShNqL~--EvP~~L-E~AKn~iVLNLS~N~IetIPn~-lfinLtDLLf 154 (1255)
T KOG0444|consen 80 LRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLSHNQLR--EVPTNL-EYAKNSIVLNLSYNNIETIPNS-LFINLTDLLF 154 (1255)
T ss_pred hHHHhhhc-cccccCCCCchhcccccceeeecchhhhh--hcchhh-hhhcCcEEEEcccCccccCCch-HHHhhHhHhh
Confidence 66665554 33444444433334566666666654311 111111 1225666777777765432211 2222445556
Q ss_pred EecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhh
Q psy5339 199 LSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQG 278 (479)
Q Consensus 199 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 278 (479)
|+++++ .+ +.++.-...+..|+.|++++|.+.-- .+...|.++.|+.|++++. .-+...
T Consensus 155 LDLS~N-rL--e~LPPQ~RRL~~LqtL~Ls~NPL~hf-----------------QLrQLPsmtsL~vLhms~T-qRTl~N 213 (1255)
T KOG0444|consen 155 LDLSNN-RL--EMLPPQIRRLSMLQTLKLSNNPLNHF-----------------QLRQLPSMTSLSVLHMSNT-QRTLDN 213 (1255)
T ss_pred hccccc-hh--hhcCHHHHHHhhhhhhhcCCChhhHH-----------------HHhcCccchhhhhhhcccc-cchhhc
Confidence 666654 22 33444455666677777777664322 2223344455666666662 222222
Q ss_pred HHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHH
Q psy5339 279 LSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLK 358 (479)
Q Consensus 279 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 358 (479)
++.-...+.+|..++++. +.++..+-... .+++|+.|++++ +.++..... ...+.+|++|+++. ++++...
T Consensus 214 ~Ptsld~l~NL~dvDlS~-N~Lp~vPecly--~l~~LrrLNLS~-N~iteL~~~--~~~W~~lEtLNlSr-NQLt~LP-- 284 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSE-NNLPIVPECLY--KLRNLRRLNLSG-NKITELNMT--EGEWENLETLNLSR-NQLTVLP-- 284 (1255)
T ss_pred CCCchhhhhhhhhccccc-cCCCcchHHHh--hhhhhheeccCc-Cceeeeecc--HHHHhhhhhhcccc-chhccch--
Confidence 222234556677777766 45544322111 236777777777 355543221 12233677777776 4444321
Q ss_pred HHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCC--CHHHHHHHHhhCCCCcEEeccCCcccchhhHHH
Q psy5339 359 VIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDV--SDAGLRALAESCPNIKKLSLRQCDLVTDRGVQC 436 (479)
Q Consensus 359 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i--~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 436 (479)
.-...+++|+.|.+.++ .++-++++.-...+.+|+++..++|.+ ..++ +. .|+.|+.|.++.|..+|-..
T Consensus 285 ~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~LElVPEg---lc-RC~kL~kL~L~~NrLiTLPe--- 356 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKLELVPEG---LC-RCVKLQKLKLDHNRLITLPE--- 356 (1255)
T ss_pred HHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccccccCchh---hh-hhHHHHHhcccccceeechh---
Confidence 11223456666666553 344444443333455666666666652 2222 22 36666777776665555322
Q ss_pred HHHcCccccEEEecccc
Q psy5339 437 IAYYCRGLQQLNIQDCQ 453 (479)
Q Consensus 437 ~~~~~~~L~~L~l~~~~ 453 (479)
.+..++.|+.|++..|+
T Consensus 357 aIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhcCCcceeeccCCc
Confidence 12344666666666665
No 10
>KOG2120|consensus
Probab=99.68 E-value=1.8e-16 Score=132.40 Aligned_cols=251 Identities=21% Similarity=0.272 Sum_probs=164.8
Q ss_pred CCchhhHHHHHhcCCcccEEeccc-ccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCC
Q psy5339 51 NVDDQGLSLIVSNCPQLIYLYLRR-CVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQ 129 (479)
Q Consensus 51 ~~~~~~~~~~~~~~~~L~~L~l~~-~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 129 (479)
.+.|+.+..+|+.++.=+-|.+.+ |.. +-.+++.-...+.+|+.+ ..+.+.....+... ....+.+... .
T Consensus 100 slpDEill~IFs~L~kk~LL~~~~VC~R-----fyr~~~de~lW~~lDl~~-r~i~p~~l~~l~~r--gV~v~Rlar~-~ 170 (419)
T KOG2120|consen 100 SLPDEILLGIFSCLCKKELLKVSGVCKR-----FYRLASDESLWQTLDLTG-RNIHPDVLGRLLSR--GVIVFRLARS-F 170 (419)
T ss_pred cCCHHHHHHHHHhccHHHHHHHHHHHHH-----HhhccccccceeeeccCC-CccChhHHHHHHhC--CeEEEEcchh-h
Confidence 466777777777765544444443 211 222333446788899987 67777666666543 4455555431 2
Q ss_pred CChHHHHHHH-HhCCccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcC
Q psy5339 130 VSDAGLKVIA-RRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVT 208 (479)
Q Consensus 130 ~~~~~l~~l~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 208 (479)
+.+..+.... ..-..|++++++.. .++...+..+.+.|.+|+.|.+.+++++|.....+++ -.+|+.++++.|..++
T Consensus 171 ~~~prlae~~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 171 MDQPRLAEHFSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFT 248 (419)
T ss_pred hcCchhhhhhhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccc
Confidence 2233222222 12246999999874 5677788888999999999999999999998888887 6899999999999999
Q ss_pred hHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCC-CCChhhHHHHHhcCC
Q psy5339 209 DRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCS-NVDDQGLSLIVSNCP 287 (479)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~ 287 (479)
+.++.-++.+|+.|.+|+++.|....+.+..+... -.++|+.|+++|+. ++....+..+...||
T Consensus 249 ~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h---------------ise~l~~LNlsG~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 249 ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH---------------ISETLTQLNLSGYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred hhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh---------------hchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence 99999999999999999999998655443333221 12246667776652 233445555556666
Q ss_pred CccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCc
Q psy5339 288 QLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTD 328 (479)
Q Consensus 288 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 328 (479)
+|.+|++++|..+.+..+..+.++ +.|++|.++.|..+..
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf-~~L~~lSlsRCY~i~p 353 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKF-NYLQHLSLSRCYDIIP 353 (419)
T ss_pred ceeeeccccccccCchHHHHHHhc-chheeeehhhhcCCCh
Confidence 666666666666655444444333 5666666666644443
No 11
>KOG2120|consensus
Probab=99.67 E-value=2.1e-16 Score=131.99 Aligned_cols=204 Identities=22% Similarity=0.353 Sum_probs=101.4
Q ss_pred CCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCC
Q psy5339 195 NIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNV 274 (479)
Q Consensus 195 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 274 (479)
.|+.+++++. .++...+..+++.|.+|+.|.+.|+.+.+.....+++
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-------------------------------- 232 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-------------------------------- 232 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc--------------------------------
Confidence 4555666544 4555555555556666666666555555444444433
Q ss_pred ChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccC-CCC
Q psy5339 275 DDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCD-QVS 353 (479)
Q Consensus 275 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~l~ 353 (479)
-.+|+.|+++.|++++..++..+...|+.|..|+++.|.-.++..-..+....++|+.|++++|. ++.
T Consensus 233 -----------N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~ 301 (419)
T KOG2120|consen 233 -----------NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ 301 (419)
T ss_pred -----------cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh
Confidence 34444444444444444444444444444445555544222222111122233455555555432 233
Q ss_pred hhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCC-CCHHHHHHHHhhCCCCcEEeccCCcccchh
Q psy5339 354 DAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD-VSDAGLRALAESCPNIKKLSLRQCDLVTDR 432 (479)
Q Consensus 354 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 432 (479)
...+..+...||+|..|++++|..+++..+..+. .++.|++|.++.|- |..+.+..+.. .|.|.+|++.|| +.+.
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~l~s-~psl~yLdv~g~--vsdt 377 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETLLELNS-KPSLVYLDVFGC--VSDT 377 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhcCCChHHeeeecc-CcceEEEEeccc--cCch
Confidence 4445555556666666666666656554444333 35666666666664 43333333332 566666666665 3444
Q ss_pred hHHHHHHcCccccE
Q psy5339 433 GVQCIAYYCRGLQQ 446 (479)
Q Consensus 433 ~~~~~~~~~~~L~~ 446 (479)
..+-+...+++|+.
T Consensus 378 ~mel~~e~~~~lki 391 (419)
T KOG2120|consen 378 TMELLKEMLSHLKI 391 (419)
T ss_pred HHHHHHHhCccccc
Confidence 44444445555543
No 12
>KOG1909|consensus
Probab=99.64 E-value=3e-15 Score=128.08 Aligned_cols=274 Identities=18% Similarity=0.273 Sum_probs=174.3
Q ss_pred HHHhcCccceEEcCCcccCHHHHHHHHHcC---CCCcEEecCCC--CCcChHH------HHHHHhhCCCCcEEEccCccc
Q psy5339 164 LARSCTRLRALDIGKCDVSDAGLRALAESC---PNIKKLSLRQC--DLVTDRG------VQCIAYYCRGLQQLNIQDCQI 232 (479)
Q Consensus 164 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~---~~L~~L~l~~~--~~~~~~~------~~~~~~~~~~L~~L~l~~~~~ 232 (479)
.......+++++++++.+..+....+.+.+ ++|+..++++. ....+.. +...+..+|+|+.|+|+.|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 333457888888888888877666665444 56666666642 0111111 122234668999999999999
Q ss_pred chhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccC
Q psy5339 233 SVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFC 312 (479)
Q Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 312 (479)
+..+++.+..+..+ .++|++|.+.+| .+...+-..+.. .|..|... .. ...-
T Consensus 105 G~~g~~~l~~ll~s-------------~~~L~eL~L~N~-Glg~~ag~~l~~---al~~l~~~--kk---------~~~~ 156 (382)
T KOG1909|consen 105 GPKGIRGLEELLSS-------------CTDLEELYLNNC-GLGPEAGGRLGR---ALFELAVN--KK---------AASK 156 (382)
T ss_pred CccchHHHHHHHHh-------------ccCHHHHhhhcC-CCChhHHHHHHH---HHHHHHHH--hc---------cCCC
Confidence 88888888776653 224777777775 344333333322 11111110 01 1112
Q ss_pred CCCcEEeccCCCCCCcHHHH---HHHHcCCCccEEeccccCCCChhHHHHH---HHhCCCccEEeccCCCCccHHHHHH-
Q psy5339 313 SQLKELSVSDCTQVTDFGLY---ELAKLGATLRYLSVAKCDQVSDAGLKVI---ARRCYKLRYLNARGCEAVSDDAITV- 385 (479)
Q Consensus 313 ~~L~~L~l~~~~~~~~~~~~---~l~~~~~~L~~L~l~~~~~l~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~- 385 (479)
++|+.+...+| .+.+.+.. ...+..|.|+.+.+.. +.+...++..+ ...||.|+.|++.++. ++..+-..
T Consensus 157 ~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~L 233 (382)
T KOG1909|consen 157 PKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVAL 233 (382)
T ss_pred cceEEEEeecc-ccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHH
Confidence 67888888774 55544433 3344557888888887 56666655333 3468999999998864 45444333
Q ss_pred --HHHhCCCCcEEEecCCCCCHHHHHHHHh----hCCCCcEEeccCCcccchhhHHHH---HHcCccccEEEeccccc--
Q psy5339 386 --LARSCTRLRALDIGKCDVSDAGLRALAE----SCPNIKKLSLRQCDLVTDRGVQCI---AYYCRGLQQLNIQDCQI-- 454 (479)
Q Consensus 386 --l~~~~~~L~~L~l~~~~i~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~~~~~---~~~~~~L~~L~l~~~~i-- 454 (479)
....+|+|++|++++|.+...+..++.+ ..|+|+.|.+.+| .++..+...+ +...|.|+.|+|++|.+
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l~e 312 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRLGE 312 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccccc
Confidence 3345778999999999988877766664 5788999999999 6776554432 33468899999999998
Q ss_pred ChHHHHHHHHhhhhc
Q psy5339 455 SVEGYRAVKKYCKRC 469 (479)
Q Consensus 455 ~~~~~~~l~~~~~~~ 469 (479)
.++++..+....+..
T Consensus 313 ~de~i~ei~~~~~~~ 327 (382)
T KOG1909|consen 313 KDEGIDEIASKFDTA 327 (382)
T ss_pred cchhHHHHHHhcccc
Confidence 677888777766543
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.61 E-value=3.1e-15 Score=158.16 Aligned_cols=106 Identities=17% Similarity=0.424 Sum_probs=42.4
Q ss_pred hcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHh
Q psy5339 284 SNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARR 363 (479)
Q Consensus 284 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 363 (479)
..+++|+.|++++|..+...+... .+++|+.|++++|..+... ....++|+.|++++ +.++... .-...
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~-----p~~~~nL~~L~Ls~-n~i~~iP--~si~~ 867 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTF-----PDISTNISDLNLSR-TGIEEVP--WWIEK 867 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccccc-----cccccccCEeECCC-CCCccCh--HHHhc
Confidence 345555555555544433321111 1345555555554333211 11123455555544 2332211 11123
Q ss_pred CCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCC
Q psy5339 364 CYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD 402 (479)
Q Consensus 364 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 402 (479)
+++|+.|++++|+.+.. +......+++|+.+++++|.
T Consensus 868 l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCc
Confidence 45555555555544432 11111234455555555553
No 14
>KOG1947|consensus
Probab=99.59 E-value=6.8e-15 Score=143.68 Aligned_cols=280 Identities=29% Similarity=0.503 Sum_probs=171.4
Q ss_pred cCccceEEcCC--cccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCc-c-cchhh--hHHHH
Q psy5339 168 CTRLRALDIGK--CDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDC-Q-ISVEG--YRAVK 241 (479)
Q Consensus 168 ~~~L~~L~l~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~-~~~~~--~~~l~ 241 (479)
...++.+.... ..........+...++.|+.+.+.++..+.+..+..+...++.|++|+++++ . +...+ ...+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 239 (482)
T KOG1947|consen 160 LANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLL 239 (482)
T ss_pred HHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhh
Confidence 34555554443 3456666666666688888888888877777777777888888999888873 2 11111 11111
Q ss_pred hhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEecc
Q psy5339 242 KYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVS 321 (479)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~ 321 (479)
. ...+|+.++++.+..+.+.++..+...|++|+.|.+.+|..+++.++..+...++.|++|+++
T Consensus 240 ~----------------~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~ 303 (482)
T KOG1947|consen 240 S----------------ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLS 303 (482)
T ss_pred h----------------hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeee
Confidence 1 123477777777766777777777777888888887777667777777777777788888888
Q ss_pred CCCCCCcHHHHHHHHcCCCccEEeccccC---CCChhHHHHHHHhCC-CccEEeccCCCCccHHHHHHHHHhCCCCcEEE
Q psy5339 322 DCTQVTDFGLYELAKLGATLRYLSVAKCD---QVSDAGLKVIARRCY-KLRYLNARGCEAVSDDAITVLARSCTRLRALD 397 (479)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~---~l~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~ 397 (479)
+|..+++.++..+...+++++.+.+..+. .+++..+........ .+..+.+.+|..+++..+.... .......+.
T Consensus 304 ~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~ 382 (482)
T KOG1947|consen 304 GCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELS 382 (482)
T ss_pred cCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHH
Confidence 87777777777776667776666554432 344433333322221 3333333333333333322222 111111233
Q ss_pred ecCCC-CCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccc-cChHHHHHHHHh
Q psy5339 398 IGKCD-VSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQ-ISVEGYRAVKKY 465 (479)
Q Consensus 398 l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~l~~~ 465 (479)
+.+|+ ++ ..+......+..++.|+++.|..+++..+......+..+..+++.++. ++...+..+...
T Consensus 383 l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 383 LRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred hcCCcccc-hHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhhcc
Confidence 33443 33 333333333444689999999888888877766557888999999987 666666555443
No 15
>KOG0618|consensus
Probab=99.58 E-value=1.2e-16 Score=152.98 Aligned_cols=84 Identities=21% Similarity=0.191 Sum_probs=50.6
Q ss_pred CcccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhc
Q psy5339 10 SPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSF 89 (479)
Q Consensus 10 ~~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 89 (479)
..+...|+.||+++|...+.+ ..+..+.+|+.|+++.+ .+.. ++...+++.+|+++.|.+ +.+.. .+.-...
T Consensus 41 ~~~~v~L~~l~lsnn~~~~fp--~~it~l~~L~~ln~s~n-~i~~--vp~s~~~~~~l~~lnL~~-n~l~~--lP~~~~~ 112 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQISSFP--IQITLLSHLRQLNLSRN-YIRS--VPSSCSNMRNLQYLNLKN-NRLQS--LPASISE 112 (1081)
T ss_pred hhheeeeEEeeccccccccCC--chhhhHHHHhhcccchh-hHhh--Cchhhhhhhcchhheecc-chhhc--CchhHHh
Confidence 344455788888888544332 22556677888888876 3433 234446677788888876 45432 2222334
Q ss_pred CCCCcEEEeecC
Q psy5339 90 CSQLKELSVSDC 101 (479)
Q Consensus 90 ~~~L~~L~l~~~ 101 (479)
+++|+.|+++++
T Consensus 113 lknl~~LdlS~N 124 (1081)
T KOG0618|consen 113 LKNLQYLDLSFN 124 (1081)
T ss_pred hhcccccccchh
Confidence 567777887763
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.57 E-value=1.9e-14 Score=152.18 Aligned_cols=313 Identities=18% Similarity=0.248 Sum_probs=177.6
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.||.|++.++.....+ ......+|+.|+++++ .+.. ++..+..+++|+.|+++++..+... +. ...+++|+
T Consensus 590 ~Lr~L~~~~~~l~~lP---~~f~~~~L~~L~L~~s-~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~i--p~-ls~l~~Le 660 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMP---SNFRPENLVKLQMQGS-KLEK--LWDGVHSLTGLRNIDLRGSKNLKEI--PD-LSMATNLE 660 (1153)
T ss_pred ccEEEEecCCCCCCCC---CcCCccCCcEEECcCc-cccc--cccccccCCCCCEEECCCCCCcCcC--Cc-cccCCccc
Confidence 4788888887544332 2224578999999886 4543 3344567889999999886555432 22 23468899
Q ss_pred EEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceE
Q psy5339 95 ELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRAL 174 (479)
Q Consensus 95 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 174 (479)
+|++++|..+.. ++.....+++|+.|++++|..+..... . ..+++|+.|++++|..... +....++|++|
T Consensus 661 ~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~--~-i~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L 730 (1153)
T PLN03210 661 TLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILPT--G-INLKSLYRLNLSGCSRLKS-----FPDISTNISWL 730 (1153)
T ss_pred EEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCccCC--c-CCCCCCCEEeCCCCCCccc-----cccccCCcCee
Confidence 999988766543 334445678899999988866543211 1 1568888999988754321 22224678888
Q ss_pred EcCCcccCHHHHHHHHHcCCCCcEEecCCCCCc--Ch--HH-HHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccc
Q psy5339 175 DIGKCDVSDAGLRALAESCPNIKKLSLRQCDLV--TD--RG-VQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCI 249 (479)
Q Consensus 175 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~--~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~ 249 (479)
+++++.+... .... .+++|+.|.+.++... .. .. ........++|+.|++++|.........
T Consensus 731 ~L~~n~i~~l--P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s---------- 797 (1153)
T PLN03210 731 DLDETAIEEF--PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS---------- 797 (1153)
T ss_pred ecCCCccccc--cccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh----------
Confidence 8888875431 1111 2566777766653210 00 00 0011123467777777776522111111
Q ss_pred cccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcH
Q psy5339 250 QISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDF 329 (479)
Q Consensus 250 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 329 (479)
...+++|+.|++++|..+... +.. ..+++|+.|++++|..+... .....+|+.|+++++ .++..
T Consensus 798 -------i~~L~~L~~L~Ls~C~~L~~L--P~~-~~L~sL~~L~Ls~c~~L~~~-----p~~~~nL~~L~Ls~n-~i~~i 861 (1153)
T PLN03210 798 -------IQNLHKLEHLEIENCINLETL--PTG-INLESLESLDLSGCSRLRTF-----PDISTNISDLNLSRT-GIEEV 861 (1153)
T ss_pred -------hhCCCCCCEEECCCCCCcCee--CCC-CCccccCEEECCCCCccccc-----cccccccCEeECCCC-CCccC
Confidence 122345777777776544421 111 14667777777776554322 122256777777763 55432
Q ss_pred HHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCcc
Q psy5339 330 GLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVS 379 (479)
Q Consensus 330 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 379 (479)
......+++|+.|++++|+++..... ....+++|+.+++++|..++
T Consensus 862 --P~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 862 --PWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred --hHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccc
Confidence 22234456777777777766654322 12245667777777776554
No 17
>KOG1947|consensus
Probab=99.57 E-value=2.5e-14 Score=139.74 Aligned_cols=283 Identities=34% Similarity=0.598 Sum_probs=150.7
Q ss_pred CCccEEecCCCC-CCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceEEcCCc-c---cCHHHHHHHHH
Q psy5339 117 ATLRYLSVAKCD-QVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKC-D---VSDAGLRALAE 191 (479)
Q Consensus 117 ~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~---~~~~~~~~l~~ 191 (479)
..++.+....+. .........+...++.|+.+.+.++..+.+.....+...+++|++|+++++ . ........+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS 240 (482)
T ss_pred HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh
Confidence 344444444332 222333444444456666666666665555555555555666666666652 1 11222233445
Q ss_pred cCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcc-cchhhhHHHHhhhccccccccccccCCcccceeEEecCC
Q psy5339 192 SCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQ-ISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTD 270 (479)
Q Consensus 192 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 270 (479)
.+++|+.++++.+..+++.++..+...|++|+.|.+.+|. +++.++..+...++ .|++|++++
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~----------------~L~~L~l~~ 304 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCP----------------SLRELDLSG 304 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcC----------------cccEEeeec
Confidence 5566666666666556666666666666666666655555 44444444443322 255555555
Q ss_pred CCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCC-cHHHHHHHHcCCCccEEecccc
Q psy5339 271 CSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVT-DFGLYELAKLGATLRYLSVAKC 349 (479)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~~L~~L~l~~~ 349 (479)
|..+.+.++..+...|++++.|.+..+.. ++.++.+.+.++.... +.........++.++.+.+..+
T Consensus 305 c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~ 372 (482)
T KOG1947|consen 305 CHGLTDSGLEALLKNCPNLRELKLLSLNG------------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC 372 (482)
T ss_pred CccchHHHHHHHHHhCcchhhhhhhhcCC------------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh
Confidence 55555555655556666666655544322 2344444444433333 2333344444555555555554
Q ss_pred CCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCC-CCHHHHHHHHhhCCCCcEEeccCCcc
Q psy5339 350 DQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD-VSDAGLRALAESCPNIKKLSLRQCDL 428 (479)
Q Consensus 350 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~~ 428 (479)
. ..+.+.. +.+.+|+.++ ..+......+..++.|+++.|. .++..+......+.+++.+++.++..
T Consensus 373 ~-~~~~~~~-----------~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 373 G-ISDLGLE-----------LSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred h-ccCcchH-----------HHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 4 3333332 3334444444 3344333334447888888876 66666666655477788888888877
Q ss_pred cchhhHHHHHHc
Q psy5339 429 VTDRGVQCIAYY 440 (479)
Q Consensus 429 l~~~~~~~~~~~ 440 (479)
++......+...
T Consensus 440 ~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 440 ITLKSLEGFASN 451 (482)
T ss_pred ccchhhhhhhcc
Confidence 777666544443
No 18
>KOG0444|consensus
Probab=99.55 E-value=8.7e-17 Score=147.60 Aligned_cols=370 Identities=15% Similarity=0.112 Sum_probs=222.8
Q ss_pred cchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCC
Q psy5339 13 QLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQ 92 (479)
Q Consensus 13 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 92 (479)
..+.|-.|+++|...-.........++.++-|.|... .+ ..++..++++.+|++|.+.+ +++.. +..-.+.+|.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L--~~vPeEL~~lqkLEHLs~~H-N~L~~--vhGELs~Lp~ 79 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KL--EQVPEELSRLQKLEHLSMAH-NQLIS--VHGELSDLPR 79 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hh--hhChHHHHHHhhhhhhhhhh-hhhHh--hhhhhccchh
Confidence 4466778888884331111122345666777777663 33 33667778888888888888 56543 2222344688
Q ss_pred CcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccc
Q psy5339 93 LKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLR 172 (479)
Q Consensus 93 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 172 (479)
|+.+.+.. +++...+++.-.-.+..|+.|+++.. .+. ..+.-....+++-.|++++++.- .....++-++..|-
T Consensus 80 LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLShN-qL~--EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 80 LRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLSHN-QLR--EVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLTDLL 153 (1255)
T ss_pred hHHHhhhc-cccccCCCCchhcccccceeeecchh-hhh--hcchhhhhhcCcEEEEcccCccc--cCCchHHHhhHhHh
Confidence 88888887 55666566555555577888888763 332 22333445578888888876422 22233444457778
Q ss_pred eEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhcccccccc
Q psy5339 173 ALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQIS 252 (479)
Q Consensus 173 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (479)
.|++++|++..- ..-...+..|++|.+++++ +....+.. +..+++|+.|.+++.+-+-..+..
T Consensus 154 fLDLS~NrLe~L--PPQ~RRL~~LqtL~Ls~NP-L~hfQLrQ-LPsmtsL~vLhms~TqRTl~N~Pt------------- 216 (1255)
T KOG0444|consen 154 FLDLSNNRLEML--PPQIRRLSMLQTLKLSNNP-LNHFQLRQ-LPSMTSLSVLHMSNTQRTLDNIPT------------- 216 (1255)
T ss_pred hhccccchhhhc--CHHHHHHhhhhhhhcCCCh-hhHHHHhc-CccchhhhhhhcccccchhhcCCC-------------
Confidence 889998875431 1112336788899998864 22222221 234556667777776633221111
Q ss_pred ccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHH
Q psy5339 253 CLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLY 332 (479)
Q Consensus 253 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 332 (479)
....+.+|..++++.+ +++. ++.....+++|+.|++++ +.++...+.. ..+.+|++|+++.+ +++.. .
T Consensus 217 ---sld~l~NL~dvDlS~N-~Lp~--vPecly~l~~LrrLNLS~-N~iteL~~~~--~~W~~lEtLNlSrN-QLt~L--P 284 (1255)
T KOG0444|consen 217 ---SLDDLHNLRDVDLSEN-NLPI--VPECLYKLRNLRRLNLSG-NKITELNMTE--GEWENLETLNLSRN-QLTVL--P 284 (1255)
T ss_pred ---chhhhhhhhhcccccc-CCCc--chHHHhhhhhhheeccCc-CceeeeeccH--HHHhhhhhhccccc-hhccc--h
Confidence 1123345888888873 4432 333345688999999999 6776654332 23478999999984 66542 2
Q ss_pred HHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCC-CH-HHHHH
Q psy5339 333 ELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDV-SD-AGLRA 410 (479)
Q Consensus 333 ~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i-~~-~~~~~ 410 (479)
...-..++|+.|.+.+ ++++-+++..-...+.+|+.+...++. +. .++.-...|++|+.|.|+.|.+ +- +++.
T Consensus 285 ~avcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~-LE--lVPEglcRC~kL~kL~L~~NrLiTLPeaIH- 359 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNK-LE--LVPEGLCRCVKLQKLKLDHNRLITLPEAIH- 359 (1255)
T ss_pred HHHhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhccc-cc--cCchhhhhhHHHHHhcccccceeechhhhh-
Confidence 2222334788887776 677777666555455677777777643 21 1222222688999999999983 31 2222
Q ss_pred HHhhCCCCcEEeccCCcccch
Q psy5339 411 LAESCPNIKKLSLRQCDLVTD 431 (479)
Q Consensus 411 l~~~~~~L~~L~l~~~~~l~~ 431 (479)
-+|.|+.|++..|+++-.
T Consensus 360 ---lL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 360 ---LLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred ---hcCCcceeeccCCcCccC
Confidence 368899999999987653
No 19
>KOG0618|consensus
Probab=99.52 E-value=1.4e-15 Score=145.80 Aligned_cols=102 Identities=21% Similarity=0.242 Sum_probs=72.0
Q ss_pred hcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcE
Q psy5339 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKE 95 (479)
Q Consensus 16 L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 95 (479)
+.+|+++.|..++.+ +.+....-+|+.||++++ .+.+ ++..+..+++|+.|.++. +.+... +.-...+.+|+.
T Consensus 23 ~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn-~~~~--fp~~it~l~~L~~ln~s~-n~i~~v--p~s~~~~~~l~~ 95 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNN-QISS--FPIQITLLSHLRQLNLSR-NYIRSV--PSSCSNMRNLQY 95 (1081)
T ss_pred HHhhhccccccccCc-hHHhhheeeeEEeecccc-cccc--CCchhhhHHHHhhcccch-hhHhhC--chhhhhhhcchh
Confidence 899999999777655 555666677999999998 4433 445556778999999988 566543 344456789999
Q ss_pred EEeecCcccCcHHHHHHHHhCCCccEEecCCC
Q psy5339 96 LSVSDCTQVTDFGLYELAKLGATLRYLSVAKC 127 (479)
Q Consensus 96 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 127 (479)
+.+.+ +.... .+.-.....+|+.|++++.
T Consensus 96 lnL~~-n~l~~--lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 96 LNLKN-NRLQS--LPASISELKNLQYLDLSFN 124 (1081)
T ss_pred heecc-chhhc--CchhHHhhhcccccccchh
Confidence 99996 44332 2222334478999999874
No 20
>KOG1909|consensus
Probab=99.49 E-value=1.4e-12 Score=111.94 Aligned_cols=235 Identities=21% Similarity=0.293 Sum_probs=164.4
Q ss_pred HHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCC--CCChhhH------HHHH
Q psy5339 212 VQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCS--NVDDQGL------SLIV 283 (479)
Q Consensus 212 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~------~~~~ 283 (479)
+.........++++++++|.++.+..+.+.+...+. +.|+..++++.. ...+..+ ....
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~-------------~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL 88 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASK-------------KELREVNLSDMFTGRLKDEIPEALKMLSKAL 88 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhc-------------ccceeeehHhhhcCCcHHHHHHHHHHHHHHH
Confidence 444445667778888888888877777776654421 136666666531 1222221 1223
Q ss_pred hcCCCccEEEeccCCccCcchhcc---ccccCCCCcEEeccCCCCCCcHHHHHH------------HHcCCCccEEeccc
Q psy5339 284 SNCPQLIYLYLRRCVKLTDIGIKY---VPSFCSQLKELSVSDCTQVTDFGLYEL------------AKLGATLRYLSVAK 348 (479)
Q Consensus 284 ~~~~~L~~L~l~~~~~l~~~~~~~---l~~~~~~L~~L~l~~~~~~~~~~~~~l------------~~~~~~L~~L~l~~ 348 (479)
..+|+|+.|++++ +.+...++.. +...+..|++|.+.+| .++..+-..+ ....+.|+.+..++
T Consensus 89 ~~~~~L~~ldLSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 89 LGCPKLQKLDLSD-NAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred hcCCceeEeeccc-cccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 4678999999998 7777765544 3455689999999997 6665543332 22467999999987
Q ss_pred cCCCChhHH---HHHHHhCCCccEEeccCCCCccHHHH---HHHHHhCCCCcEEEecCCCCCHHHHHHHHh---hCCCCc
Q psy5339 349 CDQVSDAGL---KVIARRCYKLRYLNARGCEAVSDDAI---TVLARSCTRLRALDIGKCDVSDAGLRALAE---SCPNIK 419 (479)
Q Consensus 349 ~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~---~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~ 419 (479)
+.+.+.+. ....+..|.|+.+.++.+. +...++ ..-..+||+|++|+|.+|-++.++-..+++ .+|+|+
T Consensus 167 -Nrlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 167 -NRLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred -cccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 56655543 3445667999999999864 444333 334568999999999999999988877776 467799
Q ss_pred EEeccCCcccchhhHHHHH----HcCccccEEEecccccChHHHHHHHH
Q psy5339 420 KLSLRQCDLVTDRGVQCIA----YYCRGLQQLNIQDCQISVEGYRAVKK 464 (479)
Q Consensus 420 ~L~l~~~~~l~~~~~~~~~----~~~~~L~~L~l~~~~i~~~~~~~l~~ 464 (479)
+|++++| .+...|...+. ...|.|+.|.+.+|.|+.++...+..
T Consensus 245 El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 245 ELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred eeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence 9999999 78876655443 45789999999999999988877654
No 21
>KOG3207|consensus
Probab=99.39 E-value=1.5e-13 Score=121.17 Aligned_cols=190 Identities=15% Similarity=0.110 Sum_probs=126.3
Q ss_pred eeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCcc
Q psy5339 263 LQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLR 342 (479)
Q Consensus 263 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 342 (479)
++.|+++.+-......+..++..+|+|+.|+++. +.+....-......++.|+.|.++.| .++...+..+...+|+|+
T Consensus 148 v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 148 VRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLE 225 (505)
T ss_pred ceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHH
Confidence 4444444422234555667778899999999988 55544322222234589999999998 788888888888999999
Q ss_pred EEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHH-----HHHhhCCC
Q psy5339 343 YLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLR-----ALAESCPN 417 (479)
Q Consensus 343 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~-----~l~~~~~~ 417 (479)
.|++..+..+...... ..-+..|+.|+|+++..++........ .+|.|+.|.++.|++++.... .....+|+
T Consensus 226 ~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~-~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 226 VLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVG-TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred Hhhhhcccccceecch--hhhhhHHhhccccCCcccccccccccc-cccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 9999884322211111 112357899999998777654444443 689999999999986653322 22345899
Q ss_pred CcEEeccCCcccchhhHHHHHHcCccccEEEecccccChHH
Q psy5339 418 IKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEG 458 (479)
Q Consensus 418 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 458 (479)
|+.|++..| .+.++..-.-...+++|+.|.+..|.++.+.
T Consensus 303 L~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~ 342 (505)
T KOG3207|consen 303 LEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNYLNKET 342 (505)
T ss_pred ceeeecccC-ccccccccchhhccchhhhhhcccccccccc
Confidence 999999999 4555332222345678888888888766543
No 22
>KOG3207|consensus
Probab=99.37 E-value=2.2e-13 Score=120.18 Aligned_cols=229 Identities=22% Similarity=0.212 Sum_probs=156.2
Q ss_pred EEeecCcccCcHHHHHHHHh---CCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccc
Q psy5339 96 LSVSDCTQVTDFGLYELAKL---GATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLR 172 (479)
Q Consensus 96 L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 172 (479)
+.+++ ..+...++..+++. +.+|+.+.++++ .+...+....++.|++++.|+++++-......+..++..+|+|+
T Consensus 98 ~si~n-K~vE~iGfDki~akQsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le 175 (505)
T KOG3207|consen 98 LSISN-KQVEFIGFDKIAAKQSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLE 175 (505)
T ss_pred hhhcC-ceeEEecHHHHHHHhhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccch
Confidence 33443 45555566666543 566888888875 45555554677889999999999877777778888888999999
Q ss_pred eEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcc-cchhhhHHHHhhhccccccc
Q psy5339 173 ALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQ-ISVEGYRAVKKYCKRCCIQI 251 (479)
Q Consensus 173 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~~~~~~ 251 (479)
.|+++.|++....-......++.|+.|.++.| ++++..+......+|+|+.|.+.+|. +..
T Consensus 176 ~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~----------------- 237 (505)
T KOG3207|consen 176 NLNLSSNRLSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILI----------------- 237 (505)
T ss_pred hcccccccccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccce-----------------
Confidence 99999987432111222224689999999999 68889999999999999999999984 211
Q ss_pred cccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccc-----cccCCCCcEEeccCCCCC
Q psy5339 252 SCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYV-----PSFCSQLKELSVSDCTQV 326 (479)
Q Consensus 252 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-----~~~~~~L~~L~l~~~~~~ 326 (479)
.......+..|+.|++++++.+...... ....+|.|..|+++. .++++...... ...+++|++|++..+ ++
T Consensus 238 -~~~~~~i~~~L~~LdLs~N~li~~~~~~-~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I 313 (505)
T KOG3207|consen 238 -KATSTKILQTLQELDLSNNNLIDFDQGY-KVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISEN-NI 313 (505)
T ss_pred -ecchhhhhhHHhhccccCCccccccccc-ccccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeecccC-cc
Confidence 1111122334899999996544443333 336789999999988 56666544333 344589999999994 66
Q ss_pred CcHHHHHHHHcCCCccEEeccc
Q psy5339 327 TDFGLYELAKLGATLRYLSVAK 348 (479)
Q Consensus 327 ~~~~~~~l~~~~~~L~~L~l~~ 348 (479)
.++....-....++|+.|.+..
T Consensus 314 ~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 314 RDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccccccchhhccchhhhhhccc
Confidence 5544333334455777776544
No 23
>KOG0472|consensus
Probab=99.33 E-value=1.3e-14 Score=126.41 Aligned_cols=292 Identities=13% Similarity=0.086 Sum_probs=136.1
Q ss_pred HhCCccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhC
Q psy5339 140 RRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC 219 (479)
Q Consensus 140 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 219 (479)
.+|..|+++++..+. + ........+.++++..|++..+++.+...+... +.+|+.|+++++. + .+++.-+.++
T Consensus 225 ~gcs~L~Elh~g~N~-i-~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~-i--s~Lp~sLgnl 297 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQ-I-EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNND-I--SSLPYSLGNL 297 (565)
T ss_pred CccHHHHHHHhcccH-H-HhhHHHHhcccccceeeeccccccccCchHHHH--hhhhhhhcccCCc-c--ccCCcccccc
Confidence 345566666665432 1 112244555678899999999986653332221 5789999999863 4 2333334455
Q ss_pred CCCcEEEccCcccch-------hhhHHHHhhhcc--ccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCcc
Q psy5339 220 RGLQQLNIQDCQISV-------EGYRAVKKYCKR--CCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLI 290 (479)
Q Consensus 220 ~~L~~L~l~~~~~~~-------~~~~~l~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 290 (479)
.|+.|.+.||.+.. .+-..+.++.+. .+..+..- +.=.-...+.. ...+.. ....-+.+
T Consensus 298 -hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s---------e~~~e~~~t~~-~~~~~~-~~~~i~tk 365 (565)
T KOG0472|consen 298 -HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS---------EGGTETAMTLP-SESFPD-IYAIITTK 365 (565)
T ss_pred -eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC---------cccccccCCCC-CCcccc-hhhhhhhh
Confidence 78888889988543 123333333322 00000000 00000000000 000000 01223445
Q ss_pred EEEeccCCccCcchhccccccC-CCCcEEeccCCCCCCcH----------------------HHHHHHHcCCCccEEecc
Q psy5339 291 YLYLRRCVKLTDIGIKYVPSFC-SQLKELSVSDCTQVTDF----------------------GLYELAKLGATLRYLSVA 347 (479)
Q Consensus 291 ~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~----------------------~~~~l~~~~~~L~~L~l~ 347 (479)
.|++++ ..+++.+.+.+...- .-....+++.+ ++... .+.......++|..|+++
T Consensus 366 iL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskN-qL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~ 443 (565)
T KOG0472|consen 366 ILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKN-QLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS 443 (565)
T ss_pred hhcccc-cccccCCHHHHHHhhhcceEEEecccc-hHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence 555555 344443333221110 12334444442 22110 011222233455555555
Q ss_pred ccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCc
Q psy5339 348 KCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCD 427 (479)
Q Consensus 348 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 427 (479)
+ +.+.+...... .+..|+.|+++.+.. .. ++...-....++.+-.+++++.......+. .+.+|..|++.+|.
T Consensus 444 N-N~Ln~LP~e~~--~lv~Lq~LnlS~NrF-r~--lP~~~y~lq~lEtllas~nqi~~vd~~~l~-nm~nL~tLDL~nNd 516 (565)
T KOG0472|consen 444 N-NLLNDLPEEMG--SLVRLQTLNLSFNRF-RM--LPECLYELQTLETLLASNNQIGSVDPSGLK-NMRNLTTLDLQNND 516 (565)
T ss_pred c-chhhhcchhhh--hhhhhheeccccccc-cc--chHHHhhHHHHHHHHhccccccccChHHhh-hhhhcceeccCCCc
Confidence 4 32322221111 223456666655421 11 111111122334444444554433333333 37889999999994
Q ss_pred ccchhhHHHHHHcCccccEEEecccccChHHHHHH
Q psy5339 428 LVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAV 462 (479)
Q Consensus 428 ~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l 462 (479)
+.. +..+..+|.+|++|.+++|+++.+.-.-+
T Consensus 517 -lq~--IPp~LgnmtnL~hLeL~gNpfr~Pr~~iL 548 (565)
T KOG0472|consen 517 -LQQ--IPPILGNMTNLRHLELDGNPFRQPRHQIL 548 (565)
T ss_pred -hhh--CChhhccccceeEEEecCCccCCCHHHHh
Confidence 332 44557899999999999999886554444
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.12 E-value=1.4e-10 Score=114.74 Aligned_cols=163 Identities=20% Similarity=0.171 Sum_probs=89.3
Q ss_pred ceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCc
Q psy5339 262 LLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATL 341 (479)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 341 (479)
+|+.|+++++ .+... . ...++|+.|++++ +.++..+ ...++|+.|++++| .++.. . ...++|
T Consensus 303 ~L~~LdLS~N-~L~~L--p---~lp~~L~~L~Ls~-N~L~~LP-----~lp~~Lq~LdLS~N-~Ls~L--P---~lp~~L 364 (788)
T PRK15387 303 GLQELSVSDN-QLASL--P---ALPSELCKLWAYN-NQLTSLP-----TLPSGLQELSVSDN-QLASL--P---TLPSEL 364 (788)
T ss_pred ccceeECCCC-ccccC--C---CCccccccccccc-Ccccccc-----ccccccceEecCCC-ccCCC--C---CCCccc
Confidence 4777777663 33321 1 1123566666666 3443321 11146777777773 55431 1 123466
Q ss_pred cEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEE
Q psy5339 342 RYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKL 421 (479)
Q Consensus 342 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L 421 (479)
+.|++++ +.++.. . ...++|+.|++++|. ++. +. ...++|+.|++++|.++. +.. ...+|+.|
T Consensus 365 ~~L~Ls~-N~L~~L--P---~l~~~L~~LdLs~N~-Lt~--LP---~l~s~L~~LdLS~N~Lss--IP~---l~~~L~~L 427 (788)
T PRK15387 365 YKLWAYN-NRLTSL--P---ALPSGLKELIVSGNR-LTS--LP---VLPSELKELMVSGNRLTS--LPM---LPSGLLSL 427 (788)
T ss_pred ceehhhc-cccccC--c---ccccccceEEecCCc-ccC--CC---CcccCCCEEEccCCcCCC--CCc---chhhhhhh
Confidence 6776665 444421 1 123567788887754 331 11 123578888888887653 111 13457778
Q ss_pred eccCCcccchhhHHHHHHcCccccEEEecccccChHHHHHH
Q psy5339 422 SLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAV 462 (479)
Q Consensus 422 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l 462 (479)
++++| .++.. ..-+..+++|+.|++++|+++......+
T Consensus 428 ~Ls~N-qLt~L--P~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 428 SVYRN-QLTRL--PESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhccC-ccccc--ChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 88887 45532 2223456788888888888887666655
No 25
>KOG2982|consensus
Probab=99.02 E-value=2.3e-10 Score=96.36 Aligned_cols=230 Identities=16% Similarity=0.137 Sum_probs=149.0
Q ss_pred ccceEEcCCcccCHHH-HHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhcccc
Q psy5339 170 RLRALDIGKCDVSDAG-LRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCC 248 (479)
Q Consensus 170 ~L~~L~l~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 248 (479)
.++-+.+.++.+..++ +..+...+..++.+++.++..-.+..+.+++..+|.|+.|+++.|++..
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-------------- 111 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-------------- 111 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC--------------
Confidence 3445556666654433 3444455677888888877555677788888888888888888887432
Q ss_pred ccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCC----ccCcchhccccccCCCCcEEeccCCC
Q psy5339 249 IQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCV----KLTDIGIKYVPSFCSQLKELSVSDCT 324 (479)
Q Consensus 249 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~l~~~~~~~l~~~~~~L~~L~l~~~~ 324 (479)
.+..++ .+..+|+.|.+.+ +.+++.........+|.++.|+++.++ .+.+...+.. .+.++.|....|.
T Consensus 112 -~I~~lp--~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~---s~~v~tlh~~~c~ 184 (418)
T KOG2982|consen 112 -DIKSLP--LPLKNLRVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW---STEVLTLHQLPCL 184 (418)
T ss_pred -ccccCc--ccccceEEEEEcC-CCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccccc---chhhhhhhcCCcH
Confidence 122222 3455799999988 678888777778889999999988831 2333333332 2577788888875
Q ss_pred CCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCC
Q psy5339 325 QVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVS 404 (479)
Q Consensus 325 ~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 404 (479)
.........+.+.+|++..+.+..|+ +.+..-..-....|.+-.|+++.++.-+..++..+ ..+|.|..|.++++++.
T Consensus 185 ~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~idswasvD~L-n~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 185 EQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNIDSWASVDAL-NGFPQLVDLRVSENPLS 262 (418)
T ss_pred HHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcccccccHHHHHHH-cCCchhheeeccCCccc
Confidence 55555566677788999988887743 33333333344567778888887543333444444 46899999999999876
Q ss_pred HHH-----HHHHHhhCCCCcEEe
Q psy5339 405 DAG-----LRALAESCPNIKKLS 422 (479)
Q Consensus 405 ~~~-----~~~l~~~~~~L~~L~ 422 (479)
|.- ..-+...+++++.|+
T Consensus 263 d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 263 DPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred ccccCCcceEEEEeeccceEEec
Confidence 531 111222456666554
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.02 E-value=4.9e-10 Score=110.93 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=40.3
Q ss_pred CCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCC
Q psy5339 313 SQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTR 392 (479)
Q Consensus 313 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 392 (479)
.+|+.|++++| .++... ...++|+.|++++ +.++... . .+.+|+.|++++|. ++. +..-...+++
T Consensus 382 ~~L~~LdLs~N-~Lt~LP-----~l~s~L~~LdLS~-N~LssIP--~---l~~~L~~L~Ls~Nq-Lt~--LP~sl~~L~~ 446 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLP-----VLPSELKELMVSG-NRLTSLP--M---LPSGLLSLSVYRNQ-LTR--LPESLIHLSS 446 (788)
T ss_pred cccceEEecCC-cccCCC-----CcccCCCEEEccC-CcCCCCC--c---chhhhhhhhhccCc-ccc--cChHHhhccC
Confidence 35566666553 333211 1123566666665 3333211 1 12345666666643 331 2222224667
Q ss_pred CcEEEecCCCCCHHHHHHH
Q psy5339 393 LRALDIGKCDVSDAGLRAL 411 (479)
Q Consensus 393 L~~L~l~~~~i~~~~~~~l 411 (479)
|+.|++++|++++..+..+
T Consensus 447 L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 447 ETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCeEECCCCCCCchHHHHH
Confidence 7777777777766555544
No 27
>KOG3665|consensus
Probab=99.00 E-value=8.4e-10 Score=108.74 Aligned_cols=159 Identities=21% Similarity=0.222 Sum_probs=120.6
Q ss_pred ceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCc
Q psy5339 262 LLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATL 341 (479)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 341 (479)
+|++|+++|...+....+..+...+|.|+.|.+.+ -.+....+..++..+|+|.+|||+++ ++++. .-....++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~LknL 197 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGT-NISNL---SGISRLKNL 197 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCC-CccCc---HHHhccccH
Confidence 58888888866666666667777899999999999 56666667788888899999999995 66654 222345689
Q ss_pred cEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHH-HH---HHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCC
Q psy5339 342 RYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDA-IT---VLARSCTRLRALDIGKCDVSDAGLRALAESCPN 417 (479)
Q Consensus 342 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~---~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~ 417 (479)
+.|.+.+-.--+...+..+. ++++|+.||++.-....+.. +. .....+|+|+.||.|++.++++.++.+....|+
T Consensus 198 q~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 99988875444445566665 68999999999865544431 11 123458999999999999999999999998999
Q ss_pred CcEEeccCC
Q psy5339 418 IKKLSLRQC 426 (479)
Q Consensus 418 L~~L~l~~~ 426 (479)
|+.+.+-+|
T Consensus 277 L~~i~~~~~ 285 (699)
T KOG3665|consen 277 LQQIAALDC 285 (699)
T ss_pred Hhhhhhhhh
Confidence 998887765
No 28
>KOG2982|consensus
Probab=98.97 E-value=1e-09 Score=92.51 Aligned_cols=213 Identities=15% Similarity=0.099 Sum_probs=111.6
Q ss_pred CcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCC
Q psy5339 196 IKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVD 275 (479)
Q Consensus 196 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 275 (479)
++-+.+.++..-+...+..+...++.++++++.+|.++ .
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-----------------------------------------d 85 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-----------------------------------------D 85 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-----------------------------------------c
Confidence 44455555532233344455556667777777776643 3
Q ss_pred hhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccC----C
Q psy5339 276 DQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCD----Q 351 (479)
Q Consensus 276 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~----~ 351 (479)
+..+..+..++|.|+.|+++. +.+... +..+.-...+|+.|.+.+ ..++...........|.+++|.++.++ +
T Consensus 86 WseI~~ile~lP~l~~LNls~-N~L~s~-I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n 162 (418)
T KOG2982|consen 86 WSEIGAILEQLPALTTLNLSC-NSLSSD-IKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLN 162 (418)
T ss_pred HHHHHHHHhcCccceEeeccC-CcCCCc-cccCcccccceEEEEEcC-CCCChhhhhhhhhcchhhhhhhhccchhhhhc
Confidence 444555666777777777765 444332 222221125777777776 466666666666666666666666521 1
Q ss_pred CChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccch
Q psy5339 352 VSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTD 431 (479)
Q Consensus 352 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 431 (479)
+.+..... +-+.+++|...+|..........+...+|++..+.+..|++.+..-+.-.+.+|.+-.|+++.+ ++.+
T Consensus 163 ~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~ids 238 (418)
T KOG2982|consen 163 LDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDS 238 (418)
T ss_pred cccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-cccc
Confidence 12221111 1234555555555433333344445556666666666666555444444444555555666555 4444
Q ss_pred hhHHHHHHcCccccEEEecccccCh
Q psy5339 432 RGVQCIAYYCRGLQQLNIQDCQISV 456 (479)
Q Consensus 432 ~~~~~~~~~~~~L~~L~l~~~~i~~ 456 (479)
++.-.-...++.|..|.++++++.+
T Consensus 239 wasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 239 WASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HHHHHHHcCCchhheeeccCCcccc
Confidence 4333333455666666666665543
No 29
>KOG0472|consensus
Probab=98.90 E-value=3.4e-10 Score=99.33 Aligned_cols=82 Identities=22% Similarity=0.291 Sum_probs=46.1
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.|..|+|.+|. +..++.|+.+..|+++++..+ .++.- -+...+++++|..||++. +++++..-+ + -.+.+|+
T Consensus 207 ~L~~LyL~~Nk---i~~lPef~gcs~L~Elh~g~N-~i~~l-pae~~~~L~~l~vLDLRd-Nklke~Pde-~-clLrsL~ 278 (565)
T KOG0472|consen 207 SLELLYLRRNK---IRFLPEFPGCSLLKELHVGEN-QIEML-PAEHLKHLNSLLVLDLRD-NKLKEVPDE-I-CLLRSLE 278 (565)
T ss_pred hhHHHHhhhcc---cccCCCCCccHHHHHHHhccc-HHHhh-HHHHhcccccceeeeccc-cccccCchH-H-HHhhhhh
Confidence 35556666663 334445666777777777765 44321 123334677777777777 566553221 1 2246677
Q ss_pred EEEeecCcccC
Q psy5339 95 ELSVSDCTQVT 105 (479)
Q Consensus 95 ~L~l~~~~~~~ 105 (479)
+||+++ +.++
T Consensus 279 rLDlSN-N~is 288 (565)
T KOG0472|consen 279 RLDLSN-NDIS 288 (565)
T ss_pred hhcccC-Cccc
Confidence 777776 4444
No 30
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.86 E-value=1.3e-07 Score=79.04 Aligned_cols=227 Identities=16% Similarity=0.207 Sum_probs=124.5
Q ss_pred HHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCC--CCChh---hHH---H
Q psy5339 210 RGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCS--NVDDQ---GLS---L 281 (479)
Q Consensus 210 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~---~~~---~ 281 (479)
.++...+..+..+++++++||.++.+.++.+.+.... ..+|+...+++.. ...+. .+. .
T Consensus 20 k~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~-------------~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~ 86 (388)
T COG5238 20 KGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIAN-------------VRNLRVVNFSDAFTGRDKDELYSNLVMLLK 86 (388)
T ss_pred hHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhh-------------hcceeEeehhhhhhcccHHHHHHHHHHHHH
Confidence 3344444457888899999999988888888775542 1136666665421 11111 111 1
Q ss_pred HHhcCCCccEEEeccCCccCcchhccc---cccCCCCcEEeccCCCCCCcHHHHHHH------------HcCCCccEEec
Q psy5339 282 IVSNCPQLIYLYLRRCVKLTDIGIKYV---PSFCSQLKELSVSDCTQVTDFGLYELA------------KLGATLRYLSV 346 (479)
Q Consensus 282 ~~~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l~------------~~~~~L~~L~l 346 (479)
..-.||.|+..++++ +.+.....+.+ ......|++|.+++| .+...+-..+. ..-|.|+++..
T Consensus 87 aLlkcp~l~~v~LSD-NAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 87 ALLKCPRLQKVDLSD-NAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHhcCCcceeeeccc-cccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 234689999999998 66665544332 233478999999986 55543322222 12356666666
Q ss_pred cccCCCChh---HHHHHHHhCCCccEEeccCCCCccHHHHHHHH----HhCCCCcEEEecCCCCCHHHHHHHHhh---CC
Q psy5339 347 AKCDQVSDA---GLKVIARRCYKLRYLNARGCEAVSDDAITVLA----RSCTRLRALDIGKCDVSDAGLRALAES---CP 416 (479)
Q Consensus 347 ~~~~~l~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~i~~~~~~~l~~~---~~ 416 (479)
+. +.+... -+....+.-.+|+.+.+..+ .+...++..++ ..+.+|+.|++..|.++..+-..++.. .+
T Consensus 165 gr-NRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 165 GR-NRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred cc-chhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 55 222211 11122222246666666653 35554443332 345666666666666666555555442 34
Q ss_pred CCcEEeccCCcccchhhHHHHHH-----cCccccEEEeccccc
Q psy5339 417 NIKKLSLRQCDLVTDRGVQCIAY-----YCRGLQQLNIQDCQI 454 (479)
Q Consensus 417 ~L~~L~l~~~~~l~~~~~~~~~~-----~~~~L~~L~l~~~~i 454 (479)
.|+.|.+.+| .++..|...+.. ..|+|..|...+|.+
T Consensus 243 ~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 243 LLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred hhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 4666666666 455555444332 235566666666543
No 31
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.85 E-value=3.8e-08 Score=82.20 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=58.9
Q ss_pred cCccceEEcCCcccCHHHHHHHHHcC---CCCcEEecCCCC--CcCh------HHHHHHHhhCCCCcEEEccCcccchhh
Q psy5339 168 CTRLRALDIGKCDVSDAGLRALAESC---PNIKKLSLRQCD--LVTD------RGVQCIAYYCRGLQQLNIQDCQISVEG 236 (479)
Q Consensus 168 ~~~L~~L~l~~~~~~~~~~~~l~~~~---~~L~~L~l~~~~--~~~~------~~~~~~~~~~~~L~~L~l~~~~~~~~~ 236 (479)
...++++++++|.+..+....+.... .+|+..+++... ...+ ..+...+..||.|+..+++.|.++...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 47788888888888877777666544 455555555320 0111 112233447899999999999988877
Q ss_pred hHHHHhhhccccccccccccCCcccceeEEecCCC
Q psy5339 237 YRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDC 271 (479)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 271 (479)
.+.+.++... .++|++|.+.+|
T Consensus 109 ~e~L~d~is~-------------~t~l~HL~l~Nn 130 (388)
T COG5238 109 PEELGDLISS-------------STDLVHLKLNNN 130 (388)
T ss_pred chHHHHHHhc-------------CCCceeEEeecC
Confidence 7777666542 334888888775
No 32
>KOG3665|consensus
Probab=98.84 E-value=1.3e-08 Score=100.53 Aligned_cols=156 Identities=21% Similarity=0.204 Sum_probs=63.9
Q ss_pred cccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHhCCC
Q psy5339 39 LLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGAT 118 (479)
Q Consensus 39 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 118 (479)
.+|++||++|...+...+...+..-+|.|++|.+.+ ..+....+..+..++|+|..||++++ +++.. .-...+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGT-NISNL---SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCC-CccCc---HHHhcccc
Confidence 445555555443333333333333445555555555 34444344444444555555555542 23321 11222344
Q ss_pred ccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchh-HHHH---HHHhcCccceEEcCCcccCHHHHHHHHHcCC
Q psy5339 119 LRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDD-AITV---LARSCTRLRALDIGKCDVSDAGLRALAESCP 194 (479)
Q Consensus 119 L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 194 (479)
|+.|.+.+-...+...+..+. .+++|+.||++........ .+.. -...+|+|+.||.+++.++.+.++.+...-|
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHP 275 (699)
T ss_pred HHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCc
Confidence 444444443222222233322 3455555555443222221 1111 1112345555555555555555544444444
Q ss_pred CCcEEe
Q psy5339 195 NIKKLS 200 (479)
Q Consensus 195 ~L~~L~ 200 (479)
+|+.+.
T Consensus 276 ~L~~i~ 281 (699)
T KOG3665|consen 276 NLQQIA 281 (699)
T ss_pred cHhhhh
Confidence 444433
No 33
>KOG4237|consensus
Probab=98.73 E-value=1.4e-09 Score=95.26 Aligned_cols=289 Identities=16% Similarity=0.070 Sum_probs=154.8
Q ss_pred cccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEE
Q psy5339 17 QFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKEL 96 (479)
Q Consensus 17 ~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 96 (479)
..++|..|.+..++ ..+|+.+++|+.|||+.| .+.... +..++.+++|..|.+.+.+++++..-..+. .+..|+.|
T Consensus 70 veirLdqN~I~~iP-~~aF~~l~~LRrLdLS~N-~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~-gL~slqrL 145 (498)
T KOG4237|consen 70 VEIRLDQNQISSIP-PGAFKTLHRLRRLDLSKN-NISFIA-PDAFKGLASLLSLVLYGNNKITDLPKGAFG-GLSSLQRL 145 (498)
T ss_pred eEEEeccCCcccCC-hhhccchhhhceeccccc-chhhcC-hHhhhhhHhhhHHHhhcCCchhhhhhhHhh-hHHHHHHH
Confidence 45666677544443 345888899999999987 665544 455677888888877776677775433333 35667777
Q ss_pred EeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHH-HHHhCCccceeeccCccccchhHHHHHHH---------
Q psy5339 97 SVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKV-IARRCYKLRYLNARGCEAVSDDAITVLAR--------- 166 (479)
Q Consensus 97 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~-l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--------- 166 (479)
.+.- +.+.-. .......++++.-|.+.+.. + ..+.. ..+....++.+++..+.++.+=.+.+...
T Consensus 146 llNa-n~i~Ci-r~~al~dL~~l~lLslyDn~-~--q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 146 LLNA-NHINCI-RQDALRDLPSLSLLSLYDNK-I--QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred hcCh-hhhcch-hHHHHHHhhhcchhcccchh-h--hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 7764 233322 22233344666666665421 1 11111 12233556666665544332211111100
Q ss_pred -hcCccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhc
Q psy5339 167 -SCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCK 245 (479)
Q Consensus 167 -~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 245 (479)
...-.....+.+.++..+...........+.+ .+....+........-++.+++|+.|++++|.+....-..+....
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s-~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a- 298 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPS-RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA- 298 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHH-hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh-
Confidence 00111111222222222222222111111111 112222344455555578999999999999997654333333222
Q ss_pred cccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCC
Q psy5339 246 RCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQ 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 325 (479)
.++.|.+.+ +++....- .++.++..|+.|++++ +.++-.....+... ..|..|.+-.++.
T Consensus 299 ----------------~l~eL~L~~-N~l~~v~~-~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~-~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 299 ----------------ELQELYLTR-NKLEFVSS-GMFQGLSGLKTLSLYD-NQITTVAPGAFQTL-FSLSTLNLLSNPF 358 (498)
T ss_pred ----------------hhhhhhcCc-chHHHHHH-HhhhccccceeeeecC-CeeEEEeccccccc-ceeeeeehccCcc
Confidence 288888877 34443333 3457889999999999 78877666665443 6888999877544
Q ss_pred CCcHHHHHHHH
Q psy5339 326 VTDFGLYELAK 336 (479)
Q Consensus 326 ~~~~~~~~l~~ 336 (479)
--+..+.++..
T Consensus 359 ~CnC~l~wl~~ 369 (498)
T KOG4237|consen 359 NCNCRLAWLGE 369 (498)
T ss_pred cCccchHHHHH
Confidence 44444444433
No 34
>KOG4237|consensus
Probab=98.73 E-value=3e-09 Score=93.29 Aligned_cols=86 Identities=16% Similarity=0.103 Sum_probs=39.8
Q ss_pred hCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCc
Q psy5339 363 RCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCR 442 (479)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 442 (479)
.+++|++|+++++. ++... .........+++|.|..|.+....-.. ..++..|+.|++++| .|+...... +....
T Consensus 272 ~L~~L~~lnlsnN~-i~~i~-~~aFe~~a~l~eL~L~~N~l~~v~~~~-f~~ls~L~tL~L~~N-~it~~~~~a-F~~~~ 346 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNK-ITRIE-DGAFEGAAELQELYLTRNKLEFVSSGM-FQGLSGLKTLSLYDN-QITTVAPGA-FQTLF 346 (498)
T ss_pred hcccceEeccCCCc-cchhh-hhhhcchhhhhhhhcCcchHHHHHHHh-hhccccceeeeecCC-eeEEEeccc-ccccc
Confidence 45566666666532 33211 111123445566666666543322222 223555666666666 444433222 23445
Q ss_pred cccEEEecccc
Q psy5339 443 GLQQLNIQDCQ 453 (479)
Q Consensus 443 ~L~~L~l~~~~ 453 (479)
+|.+|++-.|+
T Consensus 347 ~l~~l~l~~Np 357 (498)
T KOG4237|consen 347 SLSTLNLLSNP 357 (498)
T ss_pred eeeeeehccCc
Confidence 55666655554
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.72 E-value=5.5e-08 Score=97.12 Aligned_cols=237 Identities=14% Similarity=0.133 Sum_probs=132.9
Q ss_pred CccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhcccc
Q psy5339 169 TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCC 248 (479)
Q Consensus 169 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 248 (479)
++++.|++++|.++.... .+ .++|+.|+++++ .+.. ++.. ..++|+.|++++|.+...
T Consensus 199 ~~L~~L~Ls~N~LtsLP~-~l---~~nL~~L~Ls~N-~Lts--LP~~--l~~~L~~L~Ls~N~L~~L------------- 256 (754)
T PRK15370 199 EQITTLILDNNELKSLPE-NL---QGNIKTLYANSN-QLTS--IPAT--LPDTIQEMELSINRITEL------------- 256 (754)
T ss_pred cCCcEEEecCCCCCcCCh-hh---ccCCCEEECCCC-cccc--CChh--hhccccEEECcCCccCcC-------------
Confidence 467777887777653211 11 357788887766 3432 2211 124677788887764421
Q ss_pred ccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCc
Q psy5339 249 IQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTD 328 (479)
Q Consensus 249 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 328 (479)
+.. ...+|+.|+++++ .+.. ++. .-+++|+.|++++ +.++..+.. + .++|+.|++++| .++.
T Consensus 257 ------P~~-l~s~L~~L~Ls~N-~L~~--LP~--~l~~sL~~L~Ls~-N~Lt~LP~~-l---p~sL~~L~Ls~N-~Lt~ 318 (754)
T PRK15370 257 ------PER-LPSALQSLDLFHN-KISC--LPE--NLPEELRYLSVYD-NSIRTLPAH-L---PSGITHLNVQSN-SLTA 318 (754)
T ss_pred ------Chh-HhCCCCEEECcCC-ccCc--ccc--ccCCCCcEEECCC-CccccCccc-c---hhhHHHHHhcCC-cccc
Confidence 100 0124777877763 4432 111 1134788888877 455532211 1 146777888774 4443
Q ss_pred HHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q psy5339 329 FGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGL 408 (479)
Q Consensus 329 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 408 (479)
.. . ...++|+.|+++++ .++...- . -+++|+.|++++|. ++. +... ..++|+.|++++|.++...
T Consensus 319 LP--~--~l~~sL~~L~Ls~N-~Lt~LP~-~---l~~sL~~L~Ls~N~-L~~--LP~~--lp~~L~~LdLs~N~Lt~LP- 383 (754)
T PRK15370 319 LP--E--TLPPGLKTLEAGEN-ALTSLPA-S---LPPELQVLDVSKNQ-ITV--LPET--LPPTITTLDVSRNALTNLP- 383 (754)
T ss_pred CC--c--cccccceeccccCC-ccccCCh-h---hcCcccEEECCCCC-CCc--CChh--hcCCcCEEECCCCcCCCCC-
Confidence 11 0 12357888888774 3432211 1 13688888888864 332 1111 1368888999888866311
Q ss_pred HHHHhhCCCCcEEeccCCcccch--hhHHHHHHcCccccEEEecccccChHHHHHHHH
Q psy5339 409 RALAESCPNIKKLSLRQCDLVTD--RGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKK 464 (479)
Q Consensus 409 ~~l~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 464 (479)
..+ .++|+.|++++| .++. ..+..+...++.+..|++.+|+++...+..+..
T Consensus 384 ~~l---~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~~ 437 (754)
T PRK15370 384 ENL---PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQR 437 (754)
T ss_pred HhH---HHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHHHH
Confidence 111 135888888888 4443 234444555678888999999988777766543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=1.7e-08 Score=81.46 Aligned_cols=103 Identities=25% Similarity=0.283 Sum_probs=27.1
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.+|.|+|++|.+..+..+. ..+.+|+.|++++| .+.. +.. +..+++|++|++++ +.+++.. +.+...+|+|+
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~--~~l~~L~~L~Ls~N-~I~~--l~~-l~~L~~L~~L~L~~-N~I~~i~-~~l~~~lp~L~ 91 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLG--ATLDKLEVLDLSNN-QITK--LEG-LPGLPRLKTLDLSN-NRISSIS-EGLDKNLPNLQ 91 (175)
T ss_dssp ----------------S----TT-TT--EEE-TTS---S----TT-----TT--EEE--S-S---S-C-HHHHHH-TT--
T ss_pred ccccccccccccccccchh--hhhcCCCEEECCCC-CCcc--ccC-ccChhhhhhcccCC-CCCCccc-cchHHhCCcCC
Confidence 4677777777544443332 14567777777776 4443 222 34567777777777 5666532 12333467777
Q ss_pred EEEeecCcccCcHHHHHHHHhCCCccEEecCC
Q psy5339 95 ELSVSDCTQVTDFGLYELAKLGATLRYLSVAK 126 (479)
Q Consensus 95 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 126 (479)
+|++++ +.+.+..--.-...+|+|+.|++.+
T Consensus 92 ~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 92 ELYLSN-NKISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp EEE-TT-S---SCCCCGGGGG-TT--EEE-TT
T ss_pred EEECcC-CcCCChHHhHHHHcCCCcceeeccC
Confidence 777776 4444321111112345555555554
No 37
>KOG1259|consensus
Probab=98.55 E-value=3.3e-08 Score=83.80 Aligned_cols=126 Identities=14% Similarity=0.180 Sum_probs=55.2
Q ss_pred CCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCC
Q psy5339 287 PQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYK 366 (479)
Q Consensus 287 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 366 (479)
..|+.+++++ +.++... .-....|.++.|+++++ .+...+- ....++|..|++++ +.++.. ......+.+
T Consensus 284 q~LtelDLS~-N~I~~iD--ESvKL~Pkir~L~lS~N-~i~~v~n---La~L~~L~~LDLS~-N~Ls~~--~Gwh~KLGN 353 (490)
T KOG1259|consen 284 QELTELDLSG-NLITQID--ESVKLAPKLRRLILSQN-RIRTVQN---LAELPQLQLLDLSG-NLLAEC--VGWHLKLGN 353 (490)
T ss_pred hhhhhccccc-cchhhhh--hhhhhccceeEEecccc-ceeeehh---hhhcccceEeeccc-chhHhh--hhhHhhhcC
Confidence 4556666666 4443321 11223356666666663 4433211 11223566666665 333221 111123345
Q ss_pred ccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCH-HHHHHHHhhCCCCcEEeccCCc
Q psy5339 367 LRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSD-AGLRALAESCPNIKKLSLRQCD 427 (479)
Q Consensus 367 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~ 427 (479)
++.|.++++. +.+ +..+. .+=+|..||+++|+|.. +.+..+. .+|-|+.+.+.+|+
T Consensus 354 IKtL~La~N~-iE~--LSGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG-~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQNK-IET--LSGLR-KLYSLVNLDLSSNQIEELDEVNHIG-NLPCLETLRLTGNP 410 (490)
T ss_pred Eeeeehhhhh-Hhh--hhhhH-hhhhheeccccccchhhHHHhcccc-cccHHHHHhhcCCC
Confidence 5666665532 211 11111 13345566666665433 2233333 25556666666654
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.47 E-value=1.9e-07 Score=75.45 Aligned_cols=115 Identities=23% Similarity=0.258 Sum_probs=48.8
Q ss_pred eeecccCc-ccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhh
Q psy5339 4 ISCLTASP-TQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIG 82 (479)
Q Consensus 4 ~~~~~~~~-~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 82 (479)
|+....+. ....|+.||+++|.+.++ ..+..+++|+.|++++| .+.... ..+...+|+|++|++++ +++.+..
T Consensus 31 I~~Ie~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~~-N~I~~l~ 104 (175)
T PF14580_consen 31 ISTIENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNN-RISSIS-EGLDKNLPNLQELYLSN-NKISDLN 104 (175)
T ss_dssp -----S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS----S-C-HHHHHH-TT--EEE-TT-S---SCC
T ss_pred cccccchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCC-CCCccc-cchHHhCCcCCEEECcC-CcCCChH
Confidence 44455555 456899999999965554 45677899999999998 665422 23335789999999999 6887643
Q ss_pred -HhhhhhcCCCCcEEEeecCcccCcH-H-HHHHHHhCCCccEEecCC
Q psy5339 83 -IKYVPSFCSQLKELSVSDCTQVTDF-G-LYELAKLGATLRYLSVAK 126 (479)
Q Consensus 83 -~~~~~~~~~~L~~L~l~~~~~~~~~-~-~~~l~~~~~~L~~L~l~~ 126 (479)
+..+ ..+++|+.|++.++ .++.. . -..+...+|+|+.|+-..
T Consensus 105 ~l~~L-~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 105 ELEPL-SSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp CCGGG-GG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred HhHHH-HcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEE
Confidence 3333 45899999999984 44422 1 223445567777776543
No 39
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.43 E-value=1.2e-06 Score=87.66 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=50.4
Q ss_pred CCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCC
Q psy5339 287 PQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYK 366 (479)
Q Consensus 287 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 366 (479)
++|+.|++++ +.++..+. . ..++|+.|++++| .++.. .. ...++|+.|++++| .++.... .+. +.
T Consensus 325 ~sL~~L~Ls~-N~Lt~LP~-~---l~~sL~~L~Ls~N-~L~~L--P~--~lp~~L~~LdLs~N-~Lt~LP~-~l~---~s 389 (754)
T PRK15370 325 PGLKTLEAGE-NALTSLPA-S---LPPELQVLDVSKN-QITVL--PE--TLPPTITTLDVSRN-ALTNLPE-NLP---AA 389 (754)
T ss_pred ccceeccccC-CccccCCh-h---hcCcccEEECCCC-CCCcC--Ch--hhcCCcCEEECCCC-cCCCCCH-hHH---HH
Confidence 4566666655 33333211 1 1246666666664 34321 11 01246666666663 3332111 111 24
Q ss_pred ccEEeccCCCCccH--HHHHHHHHhCCCCcEEEecCCCCCHHHHHHH
Q psy5339 367 LRYLNARGCEAVSD--DAITVLARSCTRLRALDIGKCDVSDAGLRAL 411 (479)
Q Consensus 367 L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l 411 (479)
|+.|++++|. ++. ..+.......+++..|++.+|+++...+..+
T Consensus 390 L~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 390 LQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred HHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHH
Confidence 6666666643 221 1233333345666777777777665544443
No 40
>KOG4658|consensus
Probab=98.38 E-value=3.7e-07 Score=92.86 Aligned_cols=109 Identities=20% Similarity=0.083 Sum_probs=54.9
Q ss_pred ccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHhCC
Q psy5339 38 QLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGA 117 (479)
Q Consensus 38 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 117 (479)
.++|++|-+.++...-......++..+|.|+.||+++|..+.. ++...+.+-+||.|++++ ..++ .++.-...+.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~-t~I~--~LP~~l~~Lk 618 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSD-TGIS--HLPSGLGNLK 618 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccC-CCcc--ccchHHHHHH
Confidence 3456666666542101112233455667777777766544332 333444456666677666 3444 1333333345
Q ss_pred CccEEecCCCCCCChHHHHHHHHhCCccceeeccCc
Q psy5339 118 TLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGC 153 (479)
Q Consensus 118 ~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 153 (479)
.|.+|++........ .+.+...+++|++|.+...
T Consensus 619 ~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhheecccccccccc--ccchhhhcccccEEEeecc
Confidence 666666665432221 1344445667777776554
No 41
>KOG1259|consensus
Probab=98.29 E-value=3.4e-07 Score=77.81 Aligned_cols=230 Identities=17% Similarity=0.178 Sum_probs=111.7
Q ss_pred hHHHHHhcCCcccEEecccccc------cchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCC
Q psy5339 56 GLSLIVSNCPQLIYLYLRRCVK------LTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQ 129 (479)
Q Consensus 56 ~~~~~~~~~~~L~~L~l~~~~~------l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 129 (479)
++..++..+.+|+.|.+++... +....+++-...+.+|+.+.++.|. ...+..+...-|.|+.+.+++..
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~s~- 248 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHNTT- 248 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeeccc-
Confidence 4566667777888888876311 1111122222334667777777653 11222222333666666665421
Q ss_pred CChHHHHHHHHhCCccceeeccCccccchhH-HHHHHHhcCccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcC
Q psy5339 130 VSDAGLKVIARRCYKLRYLNARGCEAVSDDA-ITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVT 208 (479)
Q Consensus 130 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 208 (479)
+.+. +.+. |--...+..+.......+ ..........|+++++++|.++.. ..-.+-.|.++.|+++.+....
T Consensus 249 ~~~~--~~l~---pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~N~i~~ 321 (490)
T KOG1259|consen 249 IQDV--PSLL---PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQI--DESVKLAPKLRRLILSQNRIRT 321 (490)
T ss_pred cccc--cccc---chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhh--hhhhhhccceeEEeccccceee
Confidence 1110 0000 000011111111000000 000111125677888888876542 2223335788888888763222
Q ss_pred hHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCC
Q psy5339 209 DRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQ 288 (479)
Q Consensus 209 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 288 (479)
... +..+++|+.|++++|.+..-.-+. ...-+++.|.++++ .+.+ +..+ ..+-+
T Consensus 322 v~n----La~L~~L~~LDLS~N~Ls~~~Gwh------------------~KLGNIKtL~La~N-~iE~--LSGL-~KLYS 375 (490)
T KOG1259|consen 322 VQN----LAELPQLQLLDLSGNLLAECVGWH------------------LKLGNIKTLKLAQN-KIET--LSGL-RKLYS 375 (490)
T ss_pred ehh----hhhcccceEeecccchhHhhhhhH------------------hhhcCEeeeehhhh-hHhh--hhhh-Hhhhh
Confidence 222 346788888888888754321111 11224777777763 2222 1111 23456
Q ss_pred ccEEEeccCCccCcchhccccccCCCCcEEeccCC
Q psy5339 289 LIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDC 323 (479)
Q Consensus 289 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 323 (479)
|..|++++ +.+.......-...+|.|+++.+.++
T Consensus 376 LvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 376 LVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred heeccccc-cchhhHHHhcccccccHHHHHhhcCC
Confidence 77888887 56655433322344588888888875
No 42
>KOG4658|consensus
Probab=98.20 E-value=1.2e-06 Score=89.11 Aligned_cols=106 Identities=19% Similarity=0.118 Sum_probs=61.7
Q ss_pred hhcccCCCCCcc-cccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCC
Q psy5339 15 LLQFLDLTDCSC-IQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQL 93 (479)
Q Consensus 15 ~L~~L~ls~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 93 (479)
.|++|-+.++.- ........|..++.|++||+++|... ..++..++.+-+||+|++++ +.+. .++.-...+..|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l--~~LP~~I~~Li~LryL~L~~-t~I~--~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL--SKLPSSIGELVHLRYLDLSD-TGIS--HLPSGLGNLKKL 620 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc--CcCChHHhhhhhhhcccccC-CCcc--ccchHHHHHHhh
Confidence 466666655531 11112223666777888888876444 33666677777788888877 4555 234444556677
Q ss_pred cEEEeecCcccCcHHHHHHHHhCCCccEEecCCC
Q psy5339 94 KELSVSDCTQVTDFGLYELAKLGATLRYLSVAKC 127 (479)
Q Consensus 94 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 127 (479)
.+|++..+..... +..+...+++|++|.+...
T Consensus 621 ~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 621 IYLNLEVTGRLES--IPGILLELQSLRVLRLPRS 652 (889)
T ss_pred heecccccccccc--ccchhhhcccccEEEeecc
Confidence 7777776433322 2334444577777777654
No 43
>KOG3864|consensus
Probab=98.16 E-value=2.8e-06 Score=68.15 Aligned_cols=93 Identities=22% Similarity=0.448 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHhCCCCcEEEecCCC-CCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccc-cC
Q psy5339 378 VSDDAITVLARSCTRLRALDIGKCD-VSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQ-IS 455 (479)
Q Consensus 378 ~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-i~ 455 (479)
+..+++.++. .++.++.|.+.+|. +.|.++..+....|+|+.|++++|+.||+.|+..+. .+++|+.|.+.+=+ +.
T Consensus 113 I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 113 IMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHHHHhcCchhhh
Confidence 3333444433 34444444554444 444455544444455555555555555555544332 33555555555433 21
Q ss_pred --hHHHHHHHHhhhhccee
Q psy5339 456 --VEGYRAVKKYCKRCIIE 472 (479)
Q Consensus 456 --~~~~~~l~~~~~~~~i~ 472 (479)
......+++..|++.|.
T Consensus 191 ~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 191 NLELVQRQLEEALPKCDIV 209 (221)
T ss_pred chHHHHHHHHHhCccccee
Confidence 12233455566666653
No 44
>KOG3864|consensus
Probab=98.15 E-value=3.2e-06 Score=67.86 Aligned_cols=85 Identities=25% Similarity=0.407 Sum_probs=43.2
Q ss_pred CCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCC
Q psy5339 314 QLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRL 393 (479)
Q Consensus 314 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 393 (479)
.++.++-+++ .+...++..+... +.++.|.+.+|..+.|.++..+..-.++|+.|+|++|+.||+.++..+. .+++|
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~~l-~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLRDL-RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNL 178 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHhcc-chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hhhhh
Confidence 3455555553 5555555544332 3555555555555555555555544455555555555555555544443 24445
Q ss_pred cEEEecCC
Q psy5339 394 RALDIGKC 401 (479)
Q Consensus 394 ~~L~l~~~ 401 (479)
+.|.+.+-
T Consensus 179 r~L~l~~l 186 (221)
T KOG3864|consen 179 RRLHLYDL 186 (221)
T ss_pred HHHHhcCc
Confidence 54444443
No 45
>KOG0617|consensus
Probab=97.94 E-value=1.7e-07 Score=72.78 Aligned_cols=162 Identities=20% Similarity=0.176 Sum_probs=90.5
Q ss_pred eeecccCcccc---hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccch
Q psy5339 4 ISCLTASPTQL---LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTD 80 (479)
Q Consensus 4 ~~~~~~~~~~~---~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 80 (479)
|+....+|... .+..|.||+|.+..++ +.+..+.+|++|+++++ .+++ ++..++.+|+|+.|+++- +.+..
T Consensus 20 iSsf~~~~gLf~~s~ITrLtLSHNKl~~vp--pnia~l~nlevln~~nn-qie~--lp~~issl~klr~lnvgm-nrl~~ 93 (264)
T KOG0617|consen 20 ISSFEELPGLFNMSNITRLTLSHNKLTVVP--PNIAELKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGM-NRLNI 93 (264)
T ss_pred cccHhhcccccchhhhhhhhcccCceeecC--CcHHHhhhhhhhhcccc-hhhh--cChhhhhchhhhheecch-hhhhc
Confidence 44455555554 4578889999655444 44788899999999987 6644 677778899999999976 45542
Q ss_pred hhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhH
Q psy5339 81 IGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDA 160 (479)
Q Consensus 81 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~ 160 (479)
++.-.+.+|.|+.||+.. +++.+..++.-.-.+..|+.|.+++.+ . +-++.-..++.+|+.|.+..++.++.
T Consensus 94 --lprgfgs~p~levldlty-nnl~e~~lpgnff~m~tlralyl~dnd-f--e~lp~dvg~lt~lqil~lrdndll~l-- 165 (264)
T KOG0617|consen 94 --LPRGFGSFPALEVLDLTY-NNLNENSLPGNFFYMTTLRALYLGDND-F--EILPPDVGKLTNLQILSLRDNDLLSL-- 165 (264)
T ss_pred --CccccCCCchhhhhhccc-cccccccCCcchhHHHHHHHHHhcCCC-c--ccCChhhhhhcceeEEeeccCchhhC--
Confidence 233345578899999886 445443221111111234444444321 1 11222233455666666655432211
Q ss_pred HHHHHHhcCccceEEcCCcc
Q psy5339 161 ITVLARSCTRLRALDIGKCD 180 (479)
Q Consensus 161 ~~~~~~~~~~L~~L~l~~~~ 180 (479)
...+ ..+..|++|.+.+++
T Consensus 166 pkei-g~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 166 PKEI-GDLTRLRELHIQGNR 184 (264)
T ss_pred cHHH-HHHHHHHHHhcccce
Confidence 1111 122556666666665
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.80 E-value=2e-06 Score=56.71 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=39.5
Q ss_pred CCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEeccccc
Q psy5339 391 TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQI 454 (479)
Q Consensus 391 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i 454 (479)
|+|++|++++|.++......+ ..+++|++|++++| .++..... .+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f-~~l~~L~~L~l~~N-~l~~i~~~-~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSF-SNLPNLETLDLSNN-NLTSIPPD-AFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTT-TTGTTESEEEETSS-SESEEETT-TTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHH-cCCCCCCEeEccCC-ccCccCHH-HHcCCCCCCEEeCcCCcC
Confidence 567788888887654322222 24788888888877 45543322 235678888888888864
No 47
>KOG4308|consensus
Probab=97.60 E-value=2.7e-05 Score=74.04 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=15.5
Q ss_pred HHhhCCCCcEEEccCcccchhhhHHHHh
Q psy5339 215 IAYYCRGLQQLNIQDCQISVEGYRAVKK 242 (479)
Q Consensus 215 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 242 (479)
.+...+.|+.|++++|.+++.+...+.+
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~ 137 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCE 137 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHh
Confidence 3344455666666666655555555544
No 48
>KOG1859|consensus
Probab=97.51 E-value=5.9e-06 Score=78.97 Aligned_cols=176 Identities=18% Similarity=0.211 Sum_probs=88.2
Q ss_pred ccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCc---c---hhcccccc--CCCCcEEeccCCCCCCcHHH
Q psy5339 260 QLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTD---I---GIKYVPSF--CSQLKELSVSDCTQVTDFGL 331 (479)
Q Consensus 260 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~---~---~~~~l~~~--~~~L~~L~l~~~~~~~~~~~ 331 (479)
+..|+.|.+.+|+--...++..+- .+|++|.-++ .++. . ....+... +..|...+.+.| .+.. +
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr---~qLe~LIC~~--Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~--m 179 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELR---HQLEKLICHN--SLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVL--M 179 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHH---Hhhhhhhhhc--cHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHh--H
Confidence 445999999988654444444442 2444443222 1110 0 00111111 124445555442 3221 2
Q ss_pred HHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHH
Q psy5339 332 YELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRAL 411 (479)
Q Consensus 332 ~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l 411 (479)
..-....|.++.|+|+. +++++.. ...+|++|+.|+|+++. ++. +..+...-.+|+.|.+++|.++ .+..+
T Consensus 180 D~SLqll~ale~LnLsh-Nk~~~v~---~Lr~l~~LkhLDlsyN~-L~~--vp~l~~~gc~L~~L~lrnN~l~--tL~gi 250 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSH-NKFTKVD---NLRRLPKLKHLDLSYNC-LRH--VPQLSMVGCKLQLLNLRNNALT--TLRGI 250 (1096)
T ss_pred HHHHHHHHHhhhhccch-hhhhhhH---HHHhcccccccccccch-hcc--ccccchhhhhheeeeecccHHH--hhhhH
Confidence 22223345777777777 5555443 23466778888877753 221 2222211123777777777764 23333
Q ss_pred HhhCCCCcEEeccCCcccch-hhHHHHHHcCccccEEEecccccC
Q psy5339 412 AESCPNIKKLSLRQCDLVTD-RGVQCIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 412 ~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~i~ 455 (479)
.+ +.+|+.|+++.| .+.. ..+..+ ..+..|+.|++.+|++-
T Consensus 251 e~-LksL~~LDlsyN-ll~~hseL~pL-wsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 251 EN-LKSLYGLDLSYN-LLSEHSELEPL-WSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred Hh-hhhhhccchhHh-hhhcchhhhHH-HHHHHHHHHhhcCCccc
Confidence 33 667777788777 3332 222222 23467777888887743
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.43 E-value=3.8e-05 Score=50.56 Aligned_cols=57 Identities=30% Similarity=0.308 Sum_probs=31.6
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEeccc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRR 74 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 74 (479)
.|++|++++|.+..+. ...|..+++|++|++++| .+.... +..+..+++|++|++++
T Consensus 2 ~L~~L~l~~n~l~~i~-~~~f~~l~~L~~L~l~~N-~l~~i~-~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIP-PDSFSNLPNLETLDLSNN-NLTSIP-PDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TESEEEETSSTESEEC-TTTTTTGTTESEEEETSS-SESEEE-TTTTTTSTTESEEEETS
T ss_pred cCcEEECCCCCCCccC-HHHHcCCCCCCEeEccCC-ccCccC-HHHHcCCCCCCEEeCcC
Confidence 4566667666444332 234566666777777665 343221 23345666666666666
No 50
>KOG4308|consensus
Probab=97.41 E-value=0.00011 Score=69.85 Aligned_cols=74 Identities=23% Similarity=0.352 Sum_probs=52.1
Q ss_pred cceEEcCCcccCHHHHHHHHHc---CCCCcEEecCCCCCcChHHHHHHHhhC----CCCcEEEccCcccchhhhHHHHhh
Q psy5339 171 LRALDIGKCDVSDAGLRALAES---CPNIKKLSLRQCDLVTDRGVQCIAYYC----RGLQQLNIQDCQISVEGYRAVKKY 243 (479)
Q Consensus 171 L~~L~l~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~l~~~ 243 (479)
+..+.+.+|.+.+.+...+.+. .+.|+.|+++++ .+.+.+...+...+ ..++.|++..|.+...+...+...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 7788888888877666666544 478999999988 56677766665544 345667777777777766666654
Q ss_pred hc
Q psy5339 244 CK 245 (479)
Q Consensus 244 ~~ 245 (479)
..
T Consensus 168 L~ 169 (478)
T KOG4308|consen 168 LE 169 (478)
T ss_pred Hh
Confidence 43
No 51
>KOG1859|consensus
Probab=97.36 E-value=0.00012 Score=70.35 Aligned_cols=82 Identities=22% Similarity=0.275 Sum_probs=56.4
Q ss_pred CCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHh-hCCCCcEEeccCCcccch-hhHHHHHHcC
Q psy5339 364 CYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAE-SCPNIKKLSLRQCDLVTD-RGVQCIAYYC 441 (479)
Q Consensus 364 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~-~~~~L~~L~l~~~~~l~~-~~~~~~~~~~ 441 (479)
++.|+.|+++.+. +++. . ....+++|++|||++|.+... ..+.. +|. |+.|.+++|. ++. .|+ +++
T Consensus 186 l~ale~LnLshNk-~~~v--~-~Lr~l~~LkhLDlsyN~L~~v--p~l~~~gc~-L~~L~lrnN~-l~tL~gi----e~L 253 (1096)
T KOG1859|consen 186 LPALESLNLSHNK-FTKV--D-NLRRLPKLKHLDLSYNCLRHV--PQLSMVGCK-LQLLNLRNNA-LTTLRGI----ENL 253 (1096)
T ss_pred HHHhhhhccchhh-hhhh--H-HHHhcccccccccccchhccc--cccchhhhh-heeeeecccH-HHhhhhH----Hhh
Confidence 4789999999865 4432 2 334689999999999985432 22211 244 9999999994 432 444 466
Q ss_pred ccccEEEecccccChH
Q psy5339 442 RGLQQLNIQDCQISVE 457 (479)
Q Consensus 442 ~~L~~L~l~~~~i~~~ 457 (479)
.+|+.||+++|-+.+.
T Consensus 254 ksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEH 269 (1096)
T ss_pred hhhhccchhHhhhhcc
Confidence 8999999999986643
No 52
>KOG0617|consensus
Probab=97.26 E-value=3.4e-06 Score=65.72 Aligned_cols=131 Identities=19% Similarity=0.142 Sum_probs=87.9
Q ss_pred ccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCC
Q psy5339 12 TQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCS 91 (479)
Q Consensus 12 ~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 91 (479)
...+|++|++++|.+.+.+ ..++.+++|++|++.-+ .+ ..++.-++.+|-|+.|++.+ +.+.+..++.-.-.+.
T Consensus 54 ~l~nlevln~~nnqie~lp--~~issl~klr~lnvgmn-rl--~~lprgfgs~p~levldlty-nnl~e~~lpgnff~m~ 127 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIEELP--TSISSLPKLRILNVGMN-RL--NILPRGFGSFPALEVLDLTY-NNLNENSLPGNFFYMT 127 (264)
T ss_pred HhhhhhhhhcccchhhhcC--hhhhhchhhhheecchh-hh--hcCccccCCCchhhhhhccc-cccccccCCcchhHHH
Confidence 3457899999999665544 34788999999999976 33 23566678999999999999 6777654443222345
Q ss_pred CCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCcc
Q psy5339 92 QLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCE 154 (479)
Q Consensus 92 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 154 (479)
.|+-|.++++ .+.. ++.-...+.+|+.|.++..+-+ .++.-...+.+|++|++.++.
T Consensus 128 tlralyl~dn-dfe~--lp~dvg~lt~lqil~lrdndll---~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 128 TLRALYLGDN-DFEI--LPPDVGKLTNLQILSLRDNDLL---SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHhcCC-Cccc--CChhhhhhcceeEEeeccCchh---hCcHHHHHHHHHHHHhcccce
Confidence 5777777763 2221 2222344577888888764333 344445566789999998864
No 53
>KOG1644|consensus
Probab=97.22 E-value=0.00022 Score=57.54 Aligned_cols=128 Identities=22% Similarity=0.275 Sum_probs=72.0
Q ss_pred cccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEE
Q psy5339 17 QFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKEL 96 (479)
Q Consensus 17 ~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 96 (479)
+.+||.+..+.....+ -.+......+||++| .+.. ...+.++++|..|.+.+ +.++... +.+...+|+|+.|
T Consensus 22 ~e~~LR~lkip~ienl--g~~~d~~d~iDLtdN-dl~~---l~~lp~l~rL~tLll~n-NrIt~I~-p~L~~~~p~l~~L 93 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENL--GATLDQFDAIDLTDN-DLRK---LDNLPHLPRLHTLLLNN-NRITRID-PDLDTFLPNLKTL 93 (233)
T ss_pred cccccccccccchhhc--cccccccceeccccc-chhh---cccCCCccccceEEecC-Ccceeec-cchhhhccccceE
Confidence 6677777744433332 234567788888887 3332 22346678899999988 6777643 3455667889999
Q ss_pred EeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChH-HHH-HHHHhCCccceeeccCcc
Q psy5339 97 SVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDA-GLK-VIARRCYKLRYLNARGCE 154 (479)
Q Consensus 97 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~l~-~l~~~~~~L~~L~l~~~~ 154 (479)
.+.+ +.+...+--.=...+|+|++|.+-+. .++.. ... .+...+|+|+.|++.+..
T Consensus 94 ~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 94 ILTN-NSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred EecC-cchhhhhhcchhccCCccceeeecCC-chhcccCceeEEEEecCcceEeehhhhh
Confidence 9887 44443221111234567777777653 22211 110 122344556666655543
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.16 E-value=0.0005 Score=41.31 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=15.5
Q ss_pred CCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCC
Q psy5339 392 RLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQC 426 (479)
Q Consensus 392 ~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 426 (479)
+|++|++++|+|++ +......+++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 45555665555553 2221223555555555555
No 55
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.11 E-value=0.00038 Score=66.05 Aligned_cols=175 Identities=18% Similarity=0.183 Sum_probs=87.9
Q ss_pred ccccceeccCCCCCCchhhHHHHHhcCC-cccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHhC
Q psy5339 38 QLLLQFLDLTDCSNVDDQGLSLIVSNCP-QLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLG 116 (479)
Q Consensus 38 l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 116 (479)
+..++.+++.++ .+.+ ++....... +|+.|++++ +++... +.-...+++|+.|++++ +.+++. .......
T Consensus 115 ~~~l~~L~l~~n-~i~~--i~~~~~~~~~nL~~L~l~~-N~i~~l--~~~~~~l~~L~~L~l~~-N~l~~l--~~~~~~~ 185 (394)
T COG4886 115 LTNLTSLDLDNN-NITD--IPPLIGLLKSNLKELDLSD-NKIESL--PSPLRNLPNLKNLDLSF-NDLSDL--PKLLSNL 185 (394)
T ss_pred ccceeEEecCCc-cccc--Cccccccchhhcccccccc-cchhhh--hhhhhccccccccccCC-chhhhh--hhhhhhh
Confidence 355666666665 3322 233333342 677777766 455432 11224456677777766 334432 2222134
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHcCCCC
Q psy5339 117 ATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNI 196 (479)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 196 (479)
+.|+.|.+++. .+.+ ++........|+++.+.++..... ........++..+.+.++++... ......++++
T Consensus 186 ~~L~~L~ls~N-~i~~--l~~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l 257 (394)
T COG4886 186 SNLNNLDLSGN-KISD--LPPEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNL 257 (394)
T ss_pred hhhhheeccCC-cccc--CchhhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCceeeec--cchhcccccc
Confidence 56666666653 2221 122122334467777766531111 11112235666666666665431 1222335678
Q ss_pred cEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccc
Q psy5339 197 KKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 233 (479)
Q Consensus 197 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 233 (479)
+.|+++++. +..... +....+++.|+++++.+.
T Consensus 258 ~~L~~s~n~-i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 258 ETLDLSNNQ-ISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ceecccccc-cccccc---ccccCccCEEeccCcccc
Confidence 888888763 322211 446778888888887743
No 56
>KOG2123|consensus
Probab=97.09 E-value=0.00013 Score=61.88 Aligned_cols=105 Identities=22% Similarity=0.244 Sum_probs=63.0
Q ss_pred ccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHh
Q psy5339 36 PTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKL 115 (479)
Q Consensus 36 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 115 (479)
+.+.+.+.|++++| +++|. .+...+|.|+.|.|+- ++++. +..+ ..|++|++|.+.. +.|.+.......+.
T Consensus 16 sdl~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSv-NkIss--L~pl-~rCtrLkElYLRk-N~I~sldEL~YLkn 86 (388)
T KOG2123|consen 16 SDLENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSV-NKISS--LAPL-QRCTRLKELYLRK-NCIESLDELEYLKN 86 (388)
T ss_pred hHHHHhhhhcccCC-CccHH---HHHHhcccceeEEeec-ccccc--chhH-HHHHHHHHHHHHh-cccccHHHHHHHhc
Confidence 34567778888887 67663 3456778888888887 57664 2333 3477888888876 45666555555566
Q ss_pred CCCccEEecCCCCCCCh---HHHHHHHHhCCccceee
Q psy5339 116 GATLRYLSVAKCDQVSD---AGLKVIARRCYKLRYLN 149 (479)
Q Consensus 116 ~~~L~~L~l~~~~~~~~---~~l~~l~~~~~~L~~L~ 149 (479)
+|+|+.|-|....-... .--..+.+.+|+|++|+
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 67777777654221111 11122344556666555
No 57
>KOG2739|consensus
Probab=97.06 E-value=0.00036 Score=58.85 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=37.2
Q ss_pred CCcccEEecccccc-cchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHH-HHHHHHh
Q psy5339 64 CPQLIYLYLRRCVK-LTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAG-LKVIARR 141 (479)
Q Consensus 64 ~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-l~~l~~~ 141 (479)
+|+|++|.++. +. -...++..++..+|+|+++++++ +++....-..-.+.+++|.+|++.+|....... -..+...
T Consensus 64 Lp~LkkL~lsd-n~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 64 LPKLKKLELSD-NYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred cchhhhhcccC-CcccccccceehhhhCCceeEEeecC-CccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 45555665555 21 11224444455556666666655 333321111112233455566665553221111 1123344
Q ss_pred CCccceeecc
Q psy5339 142 CYKLRYLNAR 151 (479)
Q Consensus 142 ~~~L~~L~l~ 151 (479)
+++|+.|+-.
T Consensus 142 l~~L~~LD~~ 151 (260)
T KOG2739|consen 142 LPSLKYLDGC 151 (260)
T ss_pred hhhhcccccc
Confidence 5666666544
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.06 E-value=0.0008 Score=40.43 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=24.2
Q ss_pred CCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccCh
Q psy5339 416 PNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISV 456 (479)
Q Consensus 416 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~ 456 (479)
++|++|++++| .+++.. .....+++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~--~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLP--PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSS-S-SSHG--GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCC-CCcccC--chHhCCCCCCEEEecCCCCCC
Confidence 46777888877 566533 224577788888888877763
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.93 E-value=0.003 Score=58.21 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=17.3
Q ss_pred ceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCcc
Q psy5339 262 LLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKL 300 (479)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 300 (479)
+|++|.+++|..+... +.. -.++|++|.+++|..+
T Consensus 73 sLtsL~Lsnc~nLtsL--P~~--LP~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 73 ELTEITIENCNNLTTL--PGS--IPEGLEKLTVCHCPEI 107 (426)
T ss_pred CCcEEEccCCCCcccC--Cch--hhhhhhheEccCcccc
Confidence 3666666665544221 111 1246666666665433
No 60
>KOG2739|consensus
Probab=96.87 E-value=0.0003 Score=59.31 Aligned_cols=87 Identities=26% Similarity=0.326 Sum_probs=45.0
Q ss_pred CCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCH-HHHHHHHhhCCCCcEEeccCCcccch--hhHHHHHHc
Q psy5339 364 CYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSD-AGLRALAESCPNIKKLSLRQCDLVTD--RGVQCIAYY 440 (479)
Q Consensus 364 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~ 440 (479)
+|+|++|.++.+..-...++..++..+|+|+++++++|.+.+ ..+..+.+ +++|..|++.+|. .+. ..-..++..
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~-l~nL~~Ldl~n~~-~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE-LENLKSLDLFNCS-VTNLDDYREKVFLL 141 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh-hcchhhhhcccCC-ccccccHHHHHHHH
Confidence 356666666654222222344444456777777777776553 23333333 6666677777663 222 122233444
Q ss_pred CccccEEEeccc
Q psy5339 441 CRGLQQLNIQDC 452 (479)
Q Consensus 441 ~~~L~~L~l~~~ 452 (479)
+++|+.|+-.+.
T Consensus 142 l~~L~~LD~~dv 153 (260)
T KOG2739|consen 142 LPSLKYLDGCDV 153 (260)
T ss_pred hhhhcccccccc
Confidence 566666654443
No 61
>PLN03150 hypothetical protein; Provisional
Probab=96.84 E-value=0.0023 Score=64.10 Aligned_cols=14 Identities=29% Similarity=0.342 Sum_probs=6.1
Q ss_pred CCCCcEEEecCCCC
Q psy5339 390 CTRLRALDIGKCDV 403 (479)
Q Consensus 390 ~~~L~~L~l~~~~i 403 (479)
+++|+.|++++|.+
T Consensus 465 l~~L~~LdLs~N~l 478 (623)
T PLN03150 465 ITSLEVLDLSYNSF 478 (623)
T ss_pred CCCCCEEECCCCCC
Confidence 34444444444443
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.81 E-value=0.00099 Score=63.21 Aligned_cols=173 Identities=18% Similarity=0.186 Sum_probs=94.9
Q ss_pred ceeEEecCCCCCCChhhHHHHHhcC-CCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCC
Q psy5339 262 LLQFLDLTDCSNVDDQGLSLIVSNC-PQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGAT 340 (479)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 340 (479)
.++.+++.+. .+.+. ....... ++|+.|++++ +.+.... .-...+++|+.|++++| .+.+.. ......+.
T Consensus 117 ~l~~L~l~~n-~i~~i--~~~~~~~~~nL~~L~l~~-N~i~~l~--~~~~~l~~L~~L~l~~N-~l~~l~--~~~~~~~~ 187 (394)
T COG4886 117 NLTSLDLDNN-NITDI--PPLIGLLKSNLKELDLSD-NKIESLP--SPLRNLPNLKNLDLSFN-DLSDLP--KLLSNLSN 187 (394)
T ss_pred ceeEEecCCc-ccccC--ccccccchhhcccccccc-cchhhhh--hhhhccccccccccCCc-hhhhhh--hhhhhhhh
Confidence 4677777663 22221 1112223 2788888877 5665542 11123478888888874 554422 22213457
Q ss_pred ccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcE
Q psy5339 341 LRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKK 420 (479)
Q Consensus 341 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 420 (479)
|+.|++++ +.+.+..... .....|+++.++++..+.. ......++++..+.+.++++.+. .......++++.
T Consensus 188 L~~L~ls~-N~i~~l~~~~--~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~ 259 (394)
T COG4886 188 LNNLDLSG-NKISDLPPEI--ELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLET 259 (394)
T ss_pred hhheeccC-CccccCchhh--hhhhhhhhhhhcCCcceec---chhhhhcccccccccCCceeeec--cchhccccccce
Confidence 78888877 4554432221 1224477888877643322 11122456677777777775541 112223666888
Q ss_pred EeccCCcccchhhHHHHHHcCccccEEEecccccC
Q psy5339 421 LSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 421 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 455 (479)
|++++| .+++... .....+++.|+++++.++
T Consensus 260 L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 260 LDLSNN-QISSISS---LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred eccccc-ccccccc---ccccCccCEEeccCcccc
Confidence 888888 4555332 345578888888887654
No 63
>PLN03150 hypothetical protein; Provisional
Probab=96.65 E-value=0.003 Score=63.23 Aligned_cols=107 Identities=15% Similarity=0.048 Sum_probs=52.2
Q ss_pred cceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHhCCCcc
Q psy5339 41 LQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLR 120 (479)
Q Consensus 41 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 120 (479)
++.|+|+++ .+.. .++..+..+++|+.|++++ +.+... ++.....+++|+.|+++++ .++.. ++.....+++|+
T Consensus 420 v~~L~L~~n-~L~g-~ip~~i~~L~~L~~L~Ls~-N~l~g~-iP~~~~~l~~L~~LdLs~N-~lsg~-iP~~l~~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQ-GLRG-FIPNDISKLRHLQSINLSG-NSIRGN-IPPSLGSITSLEVLDLSYN-SFNGS-IPESLGQLTSLR 493 (623)
T ss_pred EEEEECCCC-Cccc-cCCHHHhCCCCCCEEECCC-CcccCc-CChHHhCCCCCCEEECCCC-CCCCC-CchHHhcCCCCC
Confidence 566666665 3332 2233456667777777776 355432 2222344666777777663 34321 222334456677
Q ss_pred EEecCCCCCCChHHHHHHHHhCCccceeeccCcc
Q psy5339 121 YLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCE 154 (479)
Q Consensus 121 ~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 154 (479)
.|+++++ .+.......+.....++..+++.++.
T Consensus 494 ~L~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 494 ILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EEECcCC-cccccCChHHhhccccCceEEecCCc
Confidence 7777653 22222112222223345556665543
No 64
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.62 E-value=0.0023 Score=33.34 Aligned_cols=23 Identities=43% Similarity=1.021 Sum_probs=11.6
Q ss_pred CCCCcEEeccCCcccchhhHHHH
Q psy5339 415 CPNIKKLSLRQCDLVTDRGVQCI 437 (479)
Q Consensus 415 ~~~L~~L~l~~~~~l~~~~~~~~ 437 (479)
||+|++|++++|+.+++.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 34555555555555555554433
No 65
>KOG2123|consensus
Probab=96.55 E-value=0.00078 Score=57.30 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=47.1
Q ss_pred hCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHH---HHHH
Q psy5339 363 RCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQ---CIAY 439 (479)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~---~~~~ 439 (479)
.+|.|+.|.++-+. ++. +..+ ..|++|++|.|..|.|.+..--.....+|+|+.|+|..|+-....|-. .+..
T Consensus 39 kMp~lEVLsLSvNk-Iss--L~pl-~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNK-ISS--LAPL-QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred hcccceeEEeeccc-ccc--chhH-HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 44555555555432 221 1111 246666666666666655322222234677777777666554443322 2334
Q ss_pred cCccccEEEecccccChHHH-HHHHHh
Q psy5339 440 YCRGLQQLNIQDCQISVEGY-RAVKKY 465 (479)
Q Consensus 440 ~~~~L~~L~l~~~~i~~~~~-~~l~~~ 465 (479)
.+|+|+.|| +-.++++.+ ++++..
T Consensus 115 ~LPnLkKLD--nv~VteeEle~ALr~g 139 (388)
T KOG2123|consen 115 VLPNLKKLD--NVPVTEEELEEALRDG 139 (388)
T ss_pred Hcccchhcc--CccccHHHHHHHHhcC
Confidence 456666553 223554444 334443
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.51 E-value=0.0034 Score=57.87 Aligned_cols=134 Identities=19% Similarity=0.299 Sum_probs=64.8
Q ss_pred ceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCc
Q psy5339 262 LLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATL 341 (479)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 341 (479)
++++|++++| .+... + .-.++|+.|.+++|..++... ..+ .++|++|++++|..+. ..+++|
T Consensus 53 ~l~~L~Is~c-~L~sL--P---~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~Cs~L~--------sLP~sL 114 (426)
T PRK15386 53 ASGRLYIKDC-DIESL--P---VLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHCPEIS--------GLPESV 114 (426)
T ss_pred CCCEEEeCCC-CCccc--C---CCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCccccc--------cccccc
Confidence 4667777765 23221 1 112357777777766553322 111 1467777777764442 123466
Q ss_pred cEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhC-CCCcE
Q psy5339 342 RYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESC-PNIKK 420 (479)
Q Consensus 342 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~-~~L~~ 420 (479)
+.|++.. +.... +.. -.++|+.|.+.++........... ..++|++|++++|.... +...+ ++|+.
T Consensus 115 e~L~L~~-n~~~~--L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-----LP~~LP~SLk~ 181 (426)
T PRK15386 115 RSLEIKG-SATDS--IKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-----LPEKLPESLQS 181 (426)
T ss_pred ceEEeCC-CCCcc--ccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCccc-----CcccccccCcE
Confidence 6776653 22221 111 224667776644221111111110 12578888888777331 11112 35788
Q ss_pred EeccCC
Q psy5339 421 LSLRQC 426 (479)
Q Consensus 421 L~l~~~ 426 (479)
|.++.+
T Consensus 182 L~ls~n 187 (426)
T PRK15386 182 ITLHIE 187 (426)
T ss_pred EEeccc
Confidence 887665
No 67
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.47 E-value=0.0027 Score=32.39 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=15.2
Q ss_pred CccccEEEecccccChHHHHHHH
Q psy5339 441 CRGLQQLNIQDCQISVEGYRAVK 463 (479)
Q Consensus 441 ~~~L~~L~l~~~~i~~~~~~~l~ 463 (479)
+++|+.|++++|+|++++++++.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 36777888888888887777764
No 68
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.41 E-value=0.0043 Score=32.31 Aligned_cols=22 Identities=32% Similarity=0.691 Sum_probs=10.3
Q ss_pred CCccEEeccCCCCccHHHHHHH
Q psy5339 365 YKLRYLNARGCEAVSDDAITVL 386 (479)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~l 386 (479)
++|++|++++|..++|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4444444444444444444433
No 69
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.26 E-value=0.0036 Score=31.89 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=12.1
Q ss_pred CCCcEEEecCCCCCHHHHHHHH
Q psy5339 391 TRLRALDIGKCDVSDAGLRALA 412 (479)
Q Consensus 391 ~~L~~L~l~~~~i~~~~~~~l~ 412 (479)
++|++|+|++|+|+++++..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5566666666666666665553
No 70
>KOG4579|consensus
Probab=96.21 E-value=0.002 Score=48.73 Aligned_cols=116 Identities=16% Similarity=0.208 Sum_probs=64.9
Q ss_pred CccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCc
Q psy5339 340 TLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIK 419 (479)
Q Consensus 340 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~ 419 (479)
.+-.+++++|.-..-............|..++++++. +.+ .-..+...+|.++.|++++|.+.+...+ ++ .+|.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~-fp~kft~kf~t~t~lNl~~neisdvPeE-~A-am~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKK-FPKKFTIKFPTATTLNLANNEISDVPEE-LA-AMPALR 103 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhh-CCHHHhhccchhhhhhcchhhhhhchHH-Hh-hhHHhh
Confidence 4445666665432111122222233566777777753 221 1123334567788888888887765555 44 378888
Q ss_pred EEeccCCcccchhhHHHHHHcCccccEEEecccccChHHHHHH
Q psy5339 420 KLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAV 462 (479)
Q Consensus 420 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l 462 (479)
.|+++.|+.... ++.+ ..+.++-.|+..+|.+.+..+..+
T Consensus 104 ~lNl~~N~l~~~--p~vi-~~L~~l~~Lds~~na~~eid~dl~ 143 (177)
T KOG4579|consen 104 SLNLRFNPLNAE--PRVI-APLIKLDMLDSPENARAEIDVDLF 143 (177)
T ss_pred hcccccCccccc--hHHH-HHHHhHHHhcCCCCccccCcHHHh
Confidence 888888854322 2222 235677777777777665555543
No 71
>KOG1644|consensus
Probab=96.03 E-value=0.0046 Score=50.22 Aligned_cols=107 Identities=16% Similarity=0.229 Sum_probs=69.8
Q ss_pred CCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHH-HHHHHHhhCCC
Q psy5339 339 ATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDA-GLRALAESCPN 417 (479)
Q Consensus 339 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~ 417 (479)
.....++++.. .+... .....++.|..|.+.++. ++... ..+...+|+|+.|.+.+|.|.+- .+..++. ||.
T Consensus 42 d~~d~iDLtdN-dl~~l---~~lp~l~rL~tLll~nNr-It~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-~p~ 114 (233)
T KOG1644|consen 42 DQFDAIDLTDN-DLRKL---DNLPHLPRLHTLLLNNNR-ITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLAS-CPK 114 (233)
T ss_pred cccceeccccc-chhhc---ccCCCccccceEEecCCc-ceeec-cchhhhccccceEEecCcchhhhhhcchhcc-CCc
Confidence 35667777763 22211 112356889999998864 54311 22334579999999999986553 3555654 999
Q ss_pred CcEEeccCCcccch-hhHH-HHHHcCccccEEEecccc
Q psy5339 418 IKKLSLRQCDLVTD-RGVQ-CIAYYCRGLQQLNIQDCQ 453 (479)
Q Consensus 418 L~~L~l~~~~~l~~-~~~~-~~~~~~~~L~~L~l~~~~ 453 (479)
|++|.+-+|+ +++ .... .+...+|+|+.||..+-.
T Consensus 115 L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 115 LEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 9999999995 443 2222 345677999999987754
No 72
>KOG0531|consensus
Probab=95.77 E-value=0.00093 Score=63.59 Aligned_cols=126 Identities=23% Similarity=0.192 Sum_probs=67.0
Q ss_pred chhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCC
Q psy5339 14 LLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQL 93 (479)
Q Consensus 14 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 93 (479)
..++.+++..+.+.. ....+..+.+|+.+++.++ .+.. +...+..+++|++|++++ +.+++. ..+ ..++.|
T Consensus 72 ~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~-N~I~~i--~~l-~~l~~L 142 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSF-NKITKL--EGL-STLTLL 142 (414)
T ss_pred HhHHhhccchhhhhh--hhcccccccceeeeecccc-chhh--cccchhhhhcchheeccc-cccccc--cch-hhccch
Confidence 345555555553332 1233566677888888876 4433 333246677888888887 566652 222 224557
Q ss_pred cEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCcc
Q psy5339 94 KELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCE 154 (479)
Q Consensus 94 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 154 (479)
+.|+++++ .++.... + ..++.|+.++++++........ . ...+.+++.+.+.++.
T Consensus 143 ~~L~l~~N-~i~~~~~--~-~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 143 KELNLSGN-LISDISG--L-ESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNS 197 (414)
T ss_pred hhheeccC-cchhccC--C-ccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCc
Confidence 88888773 4443211 1 1145666677766422211110 1 2455666666666654
No 73
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.72 E-value=0.019 Score=30.47 Aligned_cols=25 Identities=44% Similarity=0.654 Sum_probs=19.4
Q ss_pred CCCcEEEecCCCCCHHHHHHHHhhC
Q psy5339 391 TRLRALDIGKCDVSDAGLRALAESC 415 (479)
Q Consensus 391 ~~L~~L~l~~~~i~~~~~~~l~~~~ 415 (479)
++|++|+|++|.+++++...+++.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 5688888888888888888777643
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.55 E-value=0.019 Score=30.45 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=20.5
Q ss_pred ccccEEEecccccChHHHHHHHHhh
Q psy5339 442 RGLQQLNIQDCQISVEGYRAVKKYC 466 (479)
Q Consensus 442 ~~L~~L~l~~~~i~~~~~~~l~~~~ 466 (479)
++|++|+|++|.++++++..+.+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 5788899999999988888887654
No 75
>KOG0531|consensus
Probab=95.52 E-value=0.002 Score=61.41 Aligned_cols=107 Identities=25% Similarity=0.162 Sum_probs=74.4
Q ss_pred cCcccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhh
Q psy5339 9 ASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPS 88 (479)
Q Consensus 9 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 88 (479)
++.....|..|++.+|.+..+... +..+.+|++|+++++ .++. +.. +..++.|+.|++.+ +.+.+. ..+ .
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N-~I~~--i~~-l~~l~~L~~L~l~~-N~i~~~--~~~-~ 159 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFN-KITK--LEG-LSTLTLLKELNLSG-NLISDI--SGL-E 159 (414)
T ss_pred ccccccceeeeeccccchhhcccc--hhhhhcchheecccc-cccc--ccc-hhhccchhhheecc-Ccchhc--cCC-c
Confidence 477788899999999966655442 677899999999998 5655 222 35567799999999 577652 222 2
Q ss_pred cCCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCC
Q psy5339 89 FCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKC 127 (479)
Q Consensus 89 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 127 (479)
.++.|+.++++++ .++...-.. ...+..++.+.+.+.
T Consensus 160 ~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 160 SLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred cchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCC
Confidence 2688999999884 454432211 355677888888764
No 76
>KOG4579|consensus
Probab=95.19 E-value=0.0082 Score=45.56 Aligned_cols=105 Identities=19% Similarity=0.205 Sum_probs=54.7
Q ss_pred CCcEEeccCCCCCC-cHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCC
Q psy5339 314 QLKELSVSDCTQVT-DFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTR 392 (479)
Q Consensus 314 ~L~~L~l~~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 392 (479)
.+-.++++.|.-.. ...+..+. ....|+.+++++ +.+.+. ...+...+|.++.|++.++ .+++.... ...+|.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~-~~~el~~i~ls~-N~fk~f-p~kft~kf~t~t~lNl~~n-eisdvPeE--~Aam~a 101 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLS-KGYELTKISLSD-NGFKKF-PKKFTIKFPTATTLNLANN-EISDVPEE--LAAMPA 101 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHh-CCceEEEEeccc-chhhhC-CHHHhhccchhhhhhcchh-hhhhchHH--HhhhHH
Confidence 44556666662110 11122222 233666677766 333222 1234445567777777774 35543333 235778
Q ss_pred CcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCC
Q psy5339 393 LRALDIGKCDVSDAGLRALAESCPNIKKLSLRQC 426 (479)
Q Consensus 393 L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 426 (479)
|+.|+++.|++..+ .+-++. +.+|-.|+..+|
T Consensus 102 Lr~lNl~~N~l~~~-p~vi~~-L~~l~~Lds~~n 133 (177)
T KOG4579|consen 102 LRSLNLRFNPLNAE-PRVIAP-LIKLDMLDSPEN 133 (177)
T ss_pred hhhcccccCccccc-hHHHHH-HHhHHHhcCCCC
Confidence 88888888876532 233333 555666666666
No 77
>KOG3763|consensus
Probab=93.71 E-value=0.12 Score=49.06 Aligned_cols=89 Identities=22% Similarity=0.253 Sum_probs=55.1
Q ss_pred HHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCC--CCH-HHHHHHHhhCCCCcEEeccCCcccch---
Q psy5339 358 KVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD--VSD-AGLRALAESCPNIKKLSLRQCDLVTD--- 431 (479)
Q Consensus 358 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~--i~~-~~~~~l~~~~~~L~~L~l~~~~~l~~--- 431 (479)
.....+.|.+..++++++....-+.+..+.+..|+|+.|+|++|. +.. ..+..+ ....|++|.+.||+-.+.
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhh
Confidence 344445677888888877665556677777778888888888873 222 122222 245677888888865543
Q ss_pred --hhHHHHHHcCccccEEE
Q psy5339 432 --RGVQCIAYYCRGLQQLN 448 (479)
Q Consensus 432 --~~~~~~~~~~~~L~~L~ 448 (479)
..+..+...+|+|..||
T Consensus 289 ~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hHHHHHHHHHhcchheeec
Confidence 33444555667776554
No 78
>KOG3763|consensus
Probab=93.66 E-value=0.13 Score=48.78 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=62.0
Q ss_pred HHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCC--ccHHHHHHHHHhCCCCcEEEecCCCCCH----
Q psy5339 332 YELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEA--VSDDAITVLARSCTRLRALDIGKCDVSD---- 405 (479)
Q Consensus 332 ~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~i~~---- 405 (479)
.......|.+..+.++++.-..-..+..+.+..|+|+.|+|+++.. -++..+..+ ....|++|.+.+|++.+
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhh
Confidence 3344466788899998854445566777888889999999998622 222233333 35678999999998644
Q ss_pred --HHHHHHHhhCCCCcEEe
Q psy5339 406 --AGLRALAESCPNIKKLS 422 (479)
Q Consensus 406 --~~~~~l~~~~~~L~~L~ 422 (479)
+-+.++.+.||+|..||
T Consensus 289 ~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hHHHHHHHHHhcchheeec
Confidence 44666777899988775
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.34 E-value=0.14 Score=23.36 Aligned_cols=13 Identities=15% Similarity=0.547 Sum_probs=6.0
Q ss_pred cccEEEecccccC
Q psy5339 443 GLQQLNIQDCQIS 455 (479)
Q Consensus 443 ~L~~L~l~~~~i~ 455 (479)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5566666666554
No 80
>KOG0532|consensus
Probab=90.51 E-value=0.028 Score=53.23 Aligned_cols=13 Identities=31% Similarity=0.386 Sum_probs=6.2
Q ss_pred hcCCcccEEeccc
Q psy5339 62 SNCPQLIYLYLRR 74 (479)
Q Consensus 62 ~~~~~L~~L~l~~ 74 (479)
.++..|+.|+++.
T Consensus 118 ~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 118 CNLEALTFLDLSS 130 (722)
T ss_pred hhhhHHHHhhhcc
Confidence 3444455555544
No 81
>KOG0532|consensus
Probab=89.87 E-value=0.13 Score=48.91 Aligned_cols=100 Identities=19% Similarity=0.124 Sum_probs=59.3
Q ss_pred hcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcE
Q psy5339 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKE 95 (479)
Q Consensus 16 L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 95 (479)
|+.|-+++|++...+.. ++.+.+|..||.+.| .+ ..++.-++++..|+.|.++. +++.+. .+.+. . -.|.+
T Consensus 145 Lkvli~sNNkl~~lp~~--ig~~~tl~~ld~s~n-ei--~slpsql~~l~slr~l~vrR-n~l~~l-p~El~-~-LpLi~ 215 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSLPEE--IGLLPTLAHLDVSKN-EI--QSLPSQLGYLTSLRDLNVRR-NHLEDL-PEELC-S-LPLIR 215 (722)
T ss_pred ceeEEEecCccccCCcc--cccchhHHHhhhhhh-hh--hhchHHhhhHHHHHHHHHhh-hhhhhC-CHHHh-C-Cceee
Confidence 56666666644433322 446677777787776 33 23455556677788887777 454432 22333 2 34888
Q ss_pred EEeecCcccCcHHHHHHHHhCCCccEEecCCC
Q psy5339 96 LSVSDCTQVTDFGLYELAKLGATLRYLSVAKC 127 (479)
Q Consensus 96 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 127 (479)
||++. ++++. ++.-...+.+|++|.+.+.
T Consensus 216 lDfSc-Nkis~--iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 216 LDFSC-NKISY--LPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred eeccc-Cceee--cchhhhhhhhheeeeeccC
Confidence 88884 66664 3333445578888888764
No 82
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=81.20 E-value=0.95 Score=22.21 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=10.1
Q ss_pred cccEEEecccccC
Q psy5339 443 GLQQLNIQDCQIS 455 (479)
Q Consensus 443 ~L~~L~l~~~~i~ 455 (479)
+|++|++++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4778888888776
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=69.15 E-value=3.7 Score=20.96 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=11.8
Q ss_pred ccccEEEecccccChH
Q psy5339 442 RGLQQLNIQDCQISVE 457 (479)
Q Consensus 442 ~~L~~L~l~~~~i~~~ 457 (479)
++|+.|++++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 5778888888876644
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=69.15 E-value=3.7 Score=20.96 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=11.8
Q ss_pred ccccEEEecccccChH
Q psy5339 442 RGLQQLNIQDCQISVE 457 (479)
Q Consensus 442 ~~L~~L~l~~~~i~~~ 457 (479)
++|+.|++++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 5778888888876644
No 85
>KOG3735|consensus
Probab=66.74 E-value=25 Score=31.76 Aligned_cols=88 Identities=11% Similarity=0.235 Sum_probs=60.8
Q ss_pred hhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHH---hCCCCcEEEecCCCCCHH---HHHHHHhhCCCCcEEeccCCc
Q psy5339 354 DAGLKVIARRCYKLRYLNARGCEAVSDDAITVLAR---SCTRLRALDIGKCDVSDA---GLRALAESCPNIKKLSLRQCD 427 (479)
Q Consensus 354 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~~---~~~~l~~~~~~L~~L~l~~~~ 427 (479)
+..+..+-.+-+.++..+|.+...+....+..+.. ..+..+...+.+....+. ++......++.|++|++.+|
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesn- 265 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESN- 265 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccc-
Confidence 34555666677899999999887787766555543 345667777777766553 33334446888999999999
Q ss_pred ccchhhHHHHHHcCc
Q psy5339 428 LVTDRGVQCIAYYCR 442 (479)
Q Consensus 428 ~l~~~~~~~~~~~~~ 442 (479)
.|+..|+.++...++
T Consensus 266 FItg~gi~a~~~al~ 280 (353)
T KOG3735|consen 266 FITGLGIMALLRALQ 280 (353)
T ss_pred ccccHHHHHHHHHHh
Confidence 788888776665443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.42 E-value=4.8 Score=20.82 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=10.7
Q ss_pred ccccEEEecccccC
Q psy5339 442 RGLQQLNIQDCQIS 455 (479)
Q Consensus 442 ~~L~~L~l~~~~i~ 455 (479)
.+|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56788888888774
No 87
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=58.36 E-value=7.5 Score=20.06 Aligned_cols=10 Identities=20% Similarity=0.395 Sum_probs=4.2
Q ss_pred CcEEEecCCC
Q psy5339 393 LRALDIGKCD 402 (479)
Q Consensus 393 L~~L~l~~~~ 402 (479)
|++|.|.+..
T Consensus 2 LKtL~L~~v~ 11 (26)
T PF07723_consen 2 LKTLHLDSVV 11 (26)
T ss_pred CeEEEeeEEE
Confidence 3444444443
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=51.26 E-value=8.6 Score=19.88 Aligned_cols=14 Identities=29% Similarity=0.601 Sum_probs=10.3
Q ss_pred ccccEEEecccccC
Q psy5339 442 RGLQQLNIQDCQIS 455 (479)
Q Consensus 442 ~~L~~L~l~~~~i~ 455 (479)
++|+.|++++|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 46777888888765
No 89
>KOG3735|consensus
Probab=43.68 E-value=75 Score=28.89 Aligned_cols=80 Identities=13% Similarity=0.157 Sum_probs=36.8
Q ss_pred HHHhCCCccEEecCCCCCCChHHHHHHHHhCCc---cceeeccCc--cccchhHHHHHHHhcCccceEEcCCcccCHHHH
Q psy5339 112 LAKLGATLRYLSVAKCDQVSDAGLKVIARRCYK---LRYLNARGC--EAVSDDAITVLARSCTRLRALDIGKCDVSDAGL 186 (479)
Q Consensus 112 l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~---L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 186 (479)
+...-+.++..++.+...+....+..+...+.+ .+.+.+.+. +......+..+.+.++.|++|++.++.|+..++
T Consensus 193 i~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi 272 (353)
T KOG3735|consen 193 IKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGI 272 (353)
T ss_pred HhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHH
Confidence 334455666666665555555555444443332 222222221 111122233344444556666666666555555
Q ss_pred HHHHH
Q psy5339 187 RALAE 191 (479)
Q Consensus 187 ~~l~~ 191 (479)
.++..
T Consensus 273 ~a~~~ 277 (353)
T KOG3735|consen 273 MALLR 277 (353)
T ss_pred HHHHH
Confidence 54443
No 90
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=30.01 E-value=1.6e+02 Score=19.28 Aligned_cols=54 Identities=13% Similarity=0.254 Sum_probs=26.6
Q ss_pred CCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHh-----hCCCCcEEec
Q psy5339 365 YKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAE-----SCPNIKKLSL 423 (479)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~-----~~~~L~~L~l 423 (479)
.+++.+.+.+...++-..+. .-+=+.+.+....++.+.+..+.. ..|+|+.+.+
T Consensus 11 ~~~~~l~i~~~~~it~~~Ll-----~~nc~~i~l~~~~~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 11 RNLEKLSISSSNWITLDDLL-----NMNCKKIELWNSKFTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CCCCEEEEccCCcccHHHHH-----hcCCCEEEEECCCCCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 34556666544444432222 123445555555566655554443 3556666554
No 91
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=20.53 E-value=66 Score=24.27 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=5.2
Q ss_pred hcCCcccEEeccc
Q psy5339 62 SNCPQLIYLYLRR 74 (479)
Q Consensus 62 ~~~~~L~~L~l~~ 74 (479)
.++++|+.+.+.+
T Consensus 32 ~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 32 SNCTSLKSINFPN 44 (129)
T ss_dssp TT-TT-SEEEESS
T ss_pred ccccccccccccc
Confidence 3444455555543
Done!