Query psy5339
Match_columns 479
No_of_seqs 278 out of 2793
Neff 11.3
Searched_HMMs 29240
Date Sat Aug 17 00:03:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 3.8E-37 1.3E-41 306.8 36.3 410 37-475 103-539 (594)
2 3ogk_B Coronatine-insensitive 100.0 1.4E-36 4.9E-41 302.4 31.9 391 59-476 106-547 (592)
3 2p1m_B Transport inhibitor res 100.0 1.1E-34 3.8E-39 289.0 34.3 412 13-453 104-542 (594)
4 3ogk_B Coronatine-insensitive 100.0 1.1E-33 3.6E-38 281.7 32.3 415 13-453 72-549 (592)
5 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-31 3.8E-36 258.8 36.7 408 40-472 4-460 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 3.1E-31 1.1E-35 255.7 35.8 410 14-447 3-460 (461)
7 3rgz_A Protein brassinosteroid 99.9 1.4E-28 4.8E-33 250.7 -5.8 135 313-456 394-528 (768)
8 3t6q_A CD180 antigen; protein- 99.9 2E-27 6.7E-32 237.1 1.8 87 363-455 474-560 (606)
9 3rgz_A Protein brassinosteroid 99.9 1.8E-27 6.1E-32 242.6 -0.1 159 286-455 393-551 (768)
10 3vq2_A TLR4, TOLL-like recepto 99.9 9.8E-27 3.4E-31 232.0 1.5 112 10-127 52-163 (606)
11 3t6q_A CD180 antigen; protein- 99.9 5.8E-27 2E-31 233.6 -0.2 410 9-458 52-539 (606)
12 2z81_A CD282 antigen, TOLL-lik 99.9 1E-25 3.5E-30 222.0 7.3 80 365-455 431-510 (549)
13 2z63_A TOLL-like receptor 4, v 99.9 1E-26 3.4E-31 230.4 -2.4 417 15-455 29-531 (570)
14 2z7x_B TOLL-like receptor 1, v 99.9 2.1E-24 7.1E-29 211.0 14.0 395 14-455 21-481 (520)
15 1o6v_A Internalin A; bacterial 99.9 1.5E-23 5.3E-28 201.5 19.1 188 14-232 46-233 (466)
16 2z81_A CD282 antigen, TOLL-lik 99.9 3.2E-25 1.1E-29 218.5 6.8 410 15-457 27-488 (549)
17 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-25 3.8E-30 224.4 2.9 408 8-457 24-512 (606)
18 1o6v_A Internalin A; bacterial 99.9 5.8E-23 2E-27 197.5 19.2 347 36-456 43-389 (466)
19 4eco_A Uncharacterized protein 99.9 8E-26 2.7E-30 225.2 -1.7 358 59-458 200-603 (636)
20 4fmz_A Internalin; leucine ric 99.9 1.9E-22 6.4E-27 186.6 20.3 306 62-455 41-346 (347)
21 4fmz_A Internalin; leucine ric 99.9 3.7E-22 1.3E-26 184.6 19.6 305 35-427 40-344 (347)
22 1ziw_A TOLL-like receptor 3; i 99.9 1.5E-24 5.2E-29 219.1 3.8 214 9-234 18-236 (680)
23 4ecn_A Leucine-rich repeat pro 99.9 1.6E-24 5.4E-29 219.5 2.8 359 58-459 441-844 (876)
24 2ast_B S-phase kinase-associat 99.9 3.8E-21 1.3E-25 177.0 22.9 206 260-471 92-300 (336)
25 3j0a_A TOLL-like receptor 5; m 99.9 1.1E-25 3.7E-30 231.8 -8.7 167 8-182 17-187 (844)
26 1ziw_A TOLL-like receptor 3; i 99.9 1.5E-23 5E-28 211.9 5.8 88 10-101 93-181 (680)
27 2ca6_A RAN GTPase-activating p 99.9 2.8E-20 9.4E-25 174.4 27.6 273 166-470 29-333 (386)
28 3j0a_A TOLL-like receptor 5; m 99.9 3.6E-25 1.2E-29 228.0 -7.2 407 9-456 43-518 (844)
29 4ecn_A Leucine-rich repeat pro 99.9 1.3E-23 4.6E-28 212.7 2.8 354 34-428 443-839 (876)
30 3v47_A TOLL-like receptor 5B a 99.9 2E-23 6.9E-28 200.6 3.6 133 15-153 31-164 (455)
31 3v47_A TOLL-like receptor 5B a 99.9 5.7E-23 2E-27 197.5 6.0 386 17-455 13-408 (455)
32 3bz5_A Internalin-J, INLJ; leu 99.9 8.6E-23 2.9E-27 194.6 6.9 184 13-232 41-224 (457)
33 2z7x_B TOLL-like receptor 1, v 99.9 9.3E-23 3.2E-27 199.3 7.3 398 10-436 41-488 (520)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.2E-23 2.5E-27 201.8 6.5 405 15-455 53-510 (562)
35 4eco_A Uncharacterized protein 99.9 5.5E-24 1.9E-28 212.0 -1.8 357 34-428 201-599 (636)
36 2ast_B S-phase kinase-associat 99.9 9.2E-21 3.1E-25 174.4 19.6 258 170-457 48-308 (336)
37 2z63_A TOLL-like receptor 4, v 99.9 1.1E-23 3.8E-28 208.6 -3.3 379 9-428 47-530 (570)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-21 3.7E-26 193.4 5.7 381 9-435 71-516 (562)
39 3bz5_A Internalin-J, INLJ; leu 99.8 5.1E-21 1.7E-25 182.4 9.4 307 33-426 36-349 (457)
40 3o6n_A APL1; leucine-rich repe 99.8 4.2E-21 1.4E-25 180.4 6.3 98 363-470 270-367 (390)
41 2ca6_A RAN GTPase-activating p 99.8 2.5E-18 8.6E-23 161.1 24.8 185 283-472 90-308 (386)
42 4g8a_A TOLL-like receptor 4; l 99.8 1.2E-21 3.9E-26 196.8 -2.9 432 7-455 43-580 (635)
43 3o6n_A APL1; leucine-rich repe 99.8 2.8E-19 9.4E-24 167.9 12.1 317 37-437 43-359 (390)
44 3goz_A Leucine-rich repeat-con 99.8 5.5E-18 1.9E-22 157.1 19.8 80 162-242 15-102 (362)
45 1jl5_A Outer protein YOPM; leu 99.8 4.1E-20 1.4E-24 176.0 5.2 162 259-456 235-410 (454)
46 3oja_B Anopheles plasmodium-re 99.8 1.2E-19 4E-24 179.8 7.0 60 38-101 50-109 (597)
47 1jl5_A Outer protein YOPM; leu 99.8 9E-20 3.1E-24 173.6 2.8 15 390-404 356-370 (454)
48 3oja_B Anopheles plasmodium-re 99.8 7.3E-19 2.5E-23 174.1 8.0 317 14-413 51-367 (597)
49 4g8a_A TOLL-like receptor 4; l 99.7 8.4E-19 2.9E-23 176.0 3.9 410 9-437 71-588 (635)
50 3goz_A Leucine-rich repeat-con 99.7 1.8E-16 6E-21 147.0 19.1 279 174-471 3-313 (362)
51 2id5_A Lingo-1, leucine rich r 99.7 8.5E-20 2.9E-24 176.3 -3.7 181 262-455 153-333 (477)
52 2id5_A Lingo-1, leucine rich r 99.7 4.7E-19 1.6E-23 171.1 -0.6 300 15-377 33-332 (477)
53 3o53_A Protein LRIM1, AGAP0063 99.6 2.6E-17 9E-22 149.5 2.8 58 390-450 213-270 (317)
54 1xku_A Decorin; proteoglycan, 99.6 3.5E-17 1.2E-21 149.9 2.6 197 15-232 32-228 (330)
55 1wwl_A Monocyte differentiatio 99.6 3.2E-17 1.1E-21 148.6 0.9 157 143-328 149-310 (312)
56 1xku_A Decorin; proteoglycan, 99.6 1.5E-17 5.1E-22 152.3 -2.4 156 285-453 169-330 (330)
57 3o53_A Protein LRIM1, AGAP0063 99.6 2E-16 6.8E-21 143.7 4.9 233 162-464 27-259 (317)
58 2z80_A TOLL-like receptor 2, v 99.6 1.6E-16 5.6E-21 146.8 4.2 257 143-455 52-314 (353)
59 3un9_A NLR family member X1; l 99.6 1.3E-14 4.5E-19 133.8 15.4 194 261-460 72-288 (372)
60 2ft3_A Biglycan; proteoglycan, 99.6 3.1E-17 1.1E-21 150.3 -2.3 196 15-232 34-229 (332)
61 1wwl_A Monocyte differentiatio 99.6 4.3E-17 1.5E-21 147.7 -2.6 158 287-457 149-311 (312)
62 2z80_A TOLL-like receptor 2, v 99.6 1.5E-15 5E-20 140.4 7.1 280 15-326 32-314 (353)
63 3un9_A NLR family member X1; l 99.6 1.7E-13 5.7E-18 126.5 18.3 176 286-466 71-263 (372)
64 2z66_A Variable lymphocyte rec 99.6 5.5E-17 1.9E-21 146.9 -5.0 14 218-231 76-89 (306)
65 2ft3_A Biglycan; proteoglycan, 99.5 1.8E-17 6.2E-22 151.8 -9.7 88 363-453 239-331 (332)
66 3g06_A SSPH2 (leucine-rich rep 99.5 4.1E-14 1.4E-18 138.9 13.3 106 286-412 200-305 (622)
67 3g06_A SSPH2 (leucine-rich rep 99.5 2.2E-14 7.6E-19 140.8 11.3 85 365-463 221-305 (622)
68 1ogq_A PGIP-2, polygalacturona 99.5 1.5E-17 5.1E-22 150.7 -10.7 177 262-453 126-302 (313)
69 3oja_A Leucine-rich immune mol 99.5 1.1E-15 3.9E-20 146.9 0.9 237 169-450 34-270 (487)
70 4glp_A Monocyte differentiatio 99.5 1.1E-15 3.8E-20 138.4 0.2 161 285-458 143-310 (310)
71 1h6u_A Internalin H; cell adhe 99.5 1.1E-13 3.7E-18 124.9 11.5 193 218-456 39-231 (308)
72 2z66_A Variable lymphocyte rec 99.5 9.8E-16 3.3E-20 138.7 -3.8 231 194-455 28-261 (306)
73 3e4g_A ATP synthase subunit S, 99.5 5.9E-14 2E-18 112.2 6.3 91 340-433 62-156 (176)
74 3zyi_A Leucine-rich repeat-con 99.5 4.5E-15 1.5E-19 142.0 -0.4 153 169-348 75-227 (452)
75 3zyj_A Leucine-rich repeat-con 99.5 4.3E-15 1.5E-19 141.6 -0.9 227 169-427 64-290 (440)
76 4fcg_A Uncharacterized protein 99.5 5E-15 1.7E-19 134.9 -0.4 59 260-322 252-310 (328)
77 1h6u_A Internalin H; cell adhe 99.5 2E-13 6.8E-18 123.2 10.0 192 12-233 39-230 (308)
78 3e4g_A ATP synthase subunit S, 99.4 1.7E-13 6E-18 109.4 7.9 104 366-472 62-172 (176)
79 3zyj_A Leucine-rich repeat-con 99.4 7.2E-15 2.5E-19 140.0 -0.2 228 143-403 64-291 (440)
80 4fcg_A Uncharacterized protein 99.4 6.2E-15 2.1E-19 134.3 -0.9 162 283-455 146-314 (328)
81 3zyi_A Leucine-rich repeat-con 99.4 4.2E-15 1.4E-19 142.1 -2.2 177 143-348 75-251 (452)
82 1ozn_A Reticulon 4 receptor; N 99.4 2.3E-14 7.9E-19 128.1 2.6 109 193-323 31-139 (285)
83 3oja_A Leucine-rich immune mol 99.4 5.6E-14 1.9E-18 135.0 5.0 238 37-346 32-269 (487)
84 1ogq_A PGIP-2, polygalacturona 99.4 2.5E-15 8.5E-20 136.1 -5.7 160 284-455 122-281 (313)
85 1ozn_A Reticulon 4 receptor; N 99.4 3.8E-14 1.3E-18 126.7 1.9 131 169-323 32-163 (285)
86 4glp_A Monocyte differentiatio 99.4 2.4E-13 8.3E-18 123.0 6.1 236 40-328 65-308 (310)
87 2ra8_A Uncharacterized protein 99.3 4.6E-12 1.6E-16 115.7 11.5 175 284-466 136-331 (362)
88 1io0_A Tropomodulin; LRR prote 99.3 2.1E-10 7.3E-15 94.6 17.2 132 331-464 28-175 (185)
89 2ra8_A Uncharacterized protein 99.3 6.8E-11 2.3E-15 108.0 14.7 184 260-453 138-341 (362)
90 2o6q_A Variable lymphocyte rec 99.3 1.2E-12 4E-17 115.9 2.7 181 261-454 37-217 (270)
91 1h6t_A Internalin B; cell adhe 99.3 1.1E-11 3.9E-16 110.6 9.0 173 260-459 45-217 (291)
92 4ezg_A Putative uncharacterize 99.3 4.9E-12 1.7E-16 106.1 5.9 152 286-456 43-195 (197)
93 3rfs_A Internalin B, repeat mo 99.3 1.2E-12 4.1E-17 116.0 2.2 197 218-455 39-235 (272)
94 2z62_A TOLL-like receptor 4, v 99.2 2.4E-13 8.2E-18 120.9 -2.8 111 339-455 124-237 (276)
95 2z62_A TOLL-like receptor 4, v 99.2 5.3E-13 1.8E-17 118.7 -0.7 37 391-428 200-236 (276)
96 1p9a_G Platelet glycoprotein I 99.2 1.3E-12 4.5E-17 116.5 1.8 201 218-455 8-208 (290)
97 1h6t_A Internalin B; cell adhe 99.2 5E-11 1.7E-15 106.4 9.5 171 218-431 44-214 (291)
98 4ezg_A Putative uncharacterize 99.2 9.7E-11 3.3E-15 98.1 9.6 80 339-426 112-191 (197)
99 1m9s_A Internalin B; cell inva 99.1 2.7E-11 9.3E-16 118.8 6.0 191 15-235 22-212 (605)
100 3rfs_A Internalin B, repeat mo 99.1 1.6E-11 5.4E-16 108.7 2.6 192 169-426 41-232 (272)
101 2xwt_C Thyrotropin receptor; s 99.1 3.3E-12 1.1E-16 110.8 -2.8 153 285-452 78-236 (239)
102 1m9s_A Internalin B; cell inva 99.1 1E-10 3.6E-15 114.6 7.2 169 11-205 40-208 (605)
103 2o6q_A Variable lymphocyte rec 99.1 1.4E-11 4.9E-16 108.9 0.3 135 285-428 83-217 (270)
104 2je0_A Acidic leucine-rich nuc 99.1 9.1E-11 3.1E-15 93.4 4.6 132 286-451 16-149 (149)
105 2xwt_C Thyrotropin receptor; s 99.0 3.2E-12 1.1E-16 110.9 -4.8 192 251-456 23-219 (239)
106 1io0_A Tropomodulin; LRR prote 99.0 6.2E-09 2.1E-13 85.7 14.8 112 356-468 27-149 (185)
107 1p9a_G Platelet glycoprotein I 99.0 7.8E-11 2.7E-15 105.0 3.2 36 285-322 98-133 (290)
108 2je0_A Acidic leucine-rich nuc 99.0 5.7E-10 2E-14 88.7 7.1 83 259-348 15-97 (149)
109 2ell_A Acidic leucine-rich nuc 99.0 4.3E-11 1.5E-15 97.5 0.5 136 285-455 22-160 (168)
110 1xeu_A Internalin C; cellular 99.0 2.1E-10 7.1E-15 100.7 4.1 56 259-322 39-94 (263)
111 3m19_A Variable lymphocyte rec 99.0 8.4E-11 2.9E-15 102.7 1.1 82 261-348 35-116 (251)
112 3m19_A Variable lymphocyte rec 99.0 1.2E-10 4.1E-15 101.7 1.7 159 287-456 35-193 (251)
113 3cvr_A Invasion plasmid antige 99.0 5.2E-10 1.8E-14 108.5 6.2 192 220-464 59-252 (571)
114 1xeu_A Internalin C; cellular 98.9 2.8E-10 9.6E-15 99.9 2.3 170 12-234 17-186 (263)
115 2ell_A Acidic leucine-rich nuc 98.9 9.5E-10 3.2E-14 89.4 3.7 41 141-181 118-159 (168)
116 4ay9_X Follicle-stimulating ho 98.9 3.3E-11 1.1E-15 110.8 -6.2 92 7-101 21-114 (350)
117 1pgv_A TMD-1, tropomodulin TMD 98.8 2.7E-07 9.3E-12 75.2 16.3 127 330-457 32-172 (197)
118 4ay9_X Follicle-stimulating ho 98.8 1E-10 3.5E-15 107.6 -4.5 180 169-375 30-212 (350)
119 3cvr_A Invasion plasmid antige 98.8 2.4E-09 8.3E-14 103.8 4.6 192 15-243 60-253 (571)
120 2v70_A SLIT-2, SLIT homolog 2 98.8 6.4E-10 2.2E-14 94.7 -0.7 152 263-427 13-164 (220)
121 1pgv_A TMD-1, tropomodulin TMD 98.7 2.5E-07 8.7E-12 75.4 12.8 112 355-467 31-154 (197)
122 1a9n_A U2A', U2A'; complex (nu 98.7 1.1E-08 3.8E-13 83.7 4.7 65 389-455 86-153 (176)
123 2o6s_A Variable lymphocyte rec 98.7 1.5E-09 5.2E-14 91.7 -1.1 38 389-427 122-159 (208)
124 2xot_A Amphoterin-induced prot 98.7 3.1E-09 1.1E-13 98.0 0.7 64 389-454 134-201 (361)
125 1dce_A Protein (RAB geranylger 98.7 6.8E-10 2.3E-14 108.2 -4.2 87 140-233 460-546 (567)
126 2v9t_B SLIT homolog 2 protein 98.6 2.6E-09 8.9E-14 90.9 -0.5 132 287-427 32-163 (220)
127 1a9n_A U2A', U2A'; complex (nu 98.6 1.9E-08 6.4E-13 82.3 4.3 43 141-183 111-154 (176)
128 2xot_A Amphoterin-induced prot 98.6 1.5E-08 5.2E-13 93.4 4.1 164 261-433 39-206 (361)
129 3e6j_A Variable lymphocyte rec 98.6 6.7E-09 2.3E-13 89.0 1.5 59 286-348 39-97 (229)
130 1ds9_A Outer arm dynein; leuci 98.6 2.6E-09 9E-14 89.4 -1.3 86 364-457 92-187 (198)
131 2o6s_A Variable lymphocyte rec 98.6 7.7E-09 2.6E-13 87.3 0.6 88 363-455 74-161 (208)
132 2v9t_B SLIT homolog 2 protein 98.6 1E-08 3.5E-13 87.3 0.7 132 262-403 33-164 (220)
133 2v70_A SLIT-2, SLIT homolog 2 98.5 1.9E-08 6.4E-13 85.6 2.0 133 262-403 33-165 (220)
134 3sb4_A Hypothetical leucine ri 98.5 5.2E-09 1.8E-13 95.2 -1.8 196 260-470 100-324 (329)
135 3e6j_A Variable lymphocyte rec 98.5 1.8E-08 6.1E-13 86.4 1.2 62 261-327 40-101 (229)
136 1ds9_A Outer arm dynein; leuci 98.5 1.8E-08 6.1E-13 84.3 0.4 130 60-201 43-181 (198)
137 3sb4_A Hypothetical leucine ri 98.5 2.9E-08 9.9E-13 90.3 1.8 104 117-232 25-136 (329)
138 1dce_A Protein (RAB geranylger 98.4 1.9E-07 6.6E-12 91.0 4.2 125 40-176 442-567 (567)
139 1w8a_A SLIT protein; signaling 98.3 3.8E-07 1.3E-11 75.6 3.1 129 17-156 11-139 (192)
140 1w8a_A SLIT protein; signaling 98.2 1.4E-07 4.9E-12 78.2 -0.4 35 288-323 30-64 (192)
141 2wfh_A SLIT homolog 2 protein 98.2 5E-07 1.7E-11 74.9 1.7 39 389-428 100-138 (193)
142 2wfh_A SLIT homolog 2 protein 98.1 9.5E-07 3.2E-11 73.2 2.8 127 17-156 13-139 (193)
143 4b8c_D Glucose-repressible alc 98.1 1.4E-07 4.8E-12 95.0 -3.5 110 284-405 221-330 (727)
144 2o6r_A Variable lymphocyte rec 98.1 6.3E-07 2.2E-11 73.2 0.5 64 389-455 74-137 (177)
145 4b8c_D Glucose-repressible alc 97.9 7.1E-07 2.4E-11 89.9 -1.6 110 34-155 219-328 (727)
146 2o6r_A Variable lymphocyte rec 97.9 4.8E-06 1.6E-10 67.9 3.0 129 16-156 9-137 (177)
147 3rw6_A Nuclear RNA export fact 97.7 5.5E-05 1.9E-09 65.3 6.7 84 62-150 167-258 (267)
148 3g39_A Variable lymphocyte rec 97.7 1.9E-05 6.4E-10 63.8 3.4 102 16-127 11-112 (170)
149 2r9u_A Variable lymphocyte rec 97.7 2.1E-05 7.2E-10 63.7 3.4 101 17-127 15-115 (174)
150 3rw6_A Nuclear RNA export fact 97.5 0.0001 3.5E-09 63.6 5.9 38 389-426 168-206 (267)
151 3g39_A Variable lymphocyte rec 97.5 3.2E-05 1.1E-09 62.4 2.7 81 15-100 31-111 (170)
152 2r9u_A Variable lymphocyte rec 97.5 4.2E-05 1.4E-09 62.0 2.9 81 15-100 34-114 (174)
153 4fs7_A Uncharacterized protein 97.5 1.4E-06 4.9E-11 81.2 -7.1 38 34-74 66-103 (394)
154 4fdw_A Leucine rich hypothetic 97.3 2.5E-05 8.5E-10 72.6 -1.2 240 170-454 136-382 (401)
155 2ifg_A High affinity nerve gro 97.1 0.00037 1.3E-08 63.5 4.4 62 35-100 27-89 (347)
156 4fdw_A Leucine rich hypothetic 97.0 3E-05 1E-09 72.1 -3.8 218 170-426 158-380 (401)
157 2ifg_A High affinity nerve gro 96.9 0.00035 1.2E-08 63.7 2.6 86 10-101 27-113 (347)
158 4fs7_A Uncharacterized protein 96.5 0.00027 9.1E-09 65.8 -1.2 61 9-74 66-126 (394)
159 4gt6_A Cell surface protein; l 86.6 0.26 8.9E-06 45.4 2.0 80 363-453 309-389 (394)
160 3rfe_A Platelet glycoprotein I 83.5 0.51 1.8E-05 35.4 2.0 41 392-433 32-72 (130)
161 3rfe_A Platelet glycoprotein I 82.0 1.1 3.9E-05 33.5 3.4 34 16-50 33-66 (130)
162 4gt6_A Cell surface protein; l 71.0 2.8 9.7E-05 38.3 3.6 126 10-151 261-386 (394)
163 4h09_A Hypothetical leucine ri 61.1 2 6.7E-05 39.2 0.4 57 363-425 284-342 (379)
164 4h09_A Hypothetical leucine ri 52.1 3.7 0.00013 37.3 0.6 105 12-126 238-342 (379)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=3.8e-37 Score=306.77 Aligned_cols=410 Identities=21% Similarity=0.336 Sum_probs=312.6
Q ss_pred cccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHH---HHHHH
Q psy5339 37 TQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFG---LYELA 113 (479)
Q Consensus 37 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~l~ 113 (479)
.+++|++|++++| .+.+..+..+...+++|++|++++|..+++.++..+...+++|++|++++|. +++.+ +..+.
T Consensus 103 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 103 SYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP 180 (594)
T ss_dssp HCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred hCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence 4567888888876 4666666666556778888888877667766677777667788888887753 43322 33334
Q ss_pred HhCCCccEEecCCCC-CCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceEEcCCcc--cCHHHH---H
Q psy5339 114 KLGATLRYLSVAKCD-QVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD--VSDAGL---R 187 (479)
Q Consensus 114 ~~~~~L~~L~l~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~---~ 187 (479)
..+++|++|+++++. .++...+..+...+++|++|++.++... ..+..+...+++|++|++..+. +....+ .
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH--HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH--HHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 456778888887764 4666667777777788888888776432 2255566667788888776553 222222 2
Q ss_pred HHHHcCCCCcEE-ecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEE
Q psy5339 188 ALAESCPNIKKL-SLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFL 266 (479)
Q Consensus 188 ~l~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 266 (479)
.....+++|+.+ .+. ......+..+...+++|++|++++|.+.+.++..+.. ..++|++|
T Consensus 259 ~~l~~~~~L~~Ls~~~---~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~----------------~~~~L~~L 319 (594)
T 2p1m_B 259 VALSGCKELRCLSGFW---DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC----------------QCPKLQRL 319 (594)
T ss_dssp HHHHTCTTCCEEECCB---TCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHT----------------TCTTCCEE
T ss_pred HHHhcCCCcccccCCc---ccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHh----------------cCCCcCEE
Confidence 223557777777 333 2334555556667899999999999987766555432 23469999
Q ss_pred ecCCCCCCChhhHHHHHhcCCCccEEEe--------ccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcC
Q psy5339 267 DLTDCSNVDDQGLSLIVSNCPQLIYLYL--------RRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLG 338 (479)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l--------~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 338 (479)
++.++ +.+.++..+...+++|+.|++ .+++.+++.++..+...+++|++|.+.. +.+++.++..+...+
T Consensus 320 ~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~ 396 (594)
T 2p1m_B 320 WVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIARNR 396 (594)
T ss_dssp EEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHC
T ss_pred eCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHhhC
Confidence 99985 667777777778999999999 3456788888877777789999997655 689999888888888
Q ss_pred CCccEEecc-----ccCCCC----hhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHH
Q psy5339 339 ATLRYLSVA-----KCDQVS----DAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLR 409 (479)
Q Consensus 339 ~~L~~L~l~-----~~~~l~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~ 409 (479)
++|++|+++ +|+.++ +.++..+...+++|++|++++ .+++.++..+...+++|+.|++++|.+++.++.
T Consensus 397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~ 474 (594)
T 2p1m_B 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH 474 (594)
T ss_dssp TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH
T ss_pred CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH
Confidence 999999999 677888 778888888999999999977 689989988888899999999999999999999
Q ss_pred HHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccChHHHHHHHHhhhhcceeccC
Q psy5339 410 ALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCIIEHTN 475 (479)
Q Consensus 410 ~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~~i~~~~ 475 (479)
.+...+++|++|++++|+ +++.++..+...+++|+.|++++|++++++++.+...+|++++.++.
T Consensus 475 ~l~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 475 HVLSGCDSLRKLEIRDCP-FGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp HHHHHCTTCCEEEEESCS-CCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred HHHhcCCCcCEEECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 998889999999999995 58888877777889999999999999999999998889998876654
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.4e-36 Score=302.42 Aligned_cols=391 Identities=20% Similarity=0.313 Sum_probs=266.7
Q ss_pred HHHhcCCcccEEecccccccchhhHhhhhhcCCC-CcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCCh---HH
Q psy5339 59 LIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQ-LKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSD---AG 134 (479)
Q Consensus 59 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~ 134 (479)
.+...+++|++|++++| .+++..+..+...++. |++|++++|..++..++..+...+++|++|+++++. +.+ ..
T Consensus 106 ~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~ 183 (592)
T 3ogk_B 106 EISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKW 183 (592)
T ss_dssp HHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHH
T ss_pred HHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhH
Confidence 33334444444444443 3444433333332333 444444444334444444444444444444444431 111 11
Q ss_pred HHHHHHhCCccceeeccCccc--cchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHcCC------------------
Q psy5339 135 LKVIARRCYKLRYLNARGCEA--VSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCP------------------ 194 (479)
Q Consensus 135 l~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~------------------ 194 (479)
+..+...+++|++|+++++.. .....+..+...+++|++|+++++.+.. +......++
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccchHH
Confidence 333344444444444443322 1223333344444444444444444332 112222344
Q ss_pred ---------CCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeE
Q psy5339 195 ---------NIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQF 265 (479)
Q Consensus 195 ---------~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 265 (479)
+|+.+.+.+. ....+..++..+++|++|++++|.+.+.++..+.. ..++|++
T Consensus 262 ~~~~l~~~~~L~~L~l~~~---~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~----------------~~~~L~~ 322 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYM---GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ----------------KCPNLEV 322 (592)
T ss_dssp SSSCCCCCTTCCEEEETTC---CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT----------------TCTTCCE
T ss_pred HHHHhhccccccccCcccc---chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH----------------hCcCCCE
Confidence 4444444432 22344555667889999999999877666544322 2345999
Q ss_pred EecCCCCCCChhhHHHHHhcCCCccEEEecc----------CCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHH
Q psy5339 266 LDLTDCSNVDDQGLSLIVSNCPQLIYLYLRR----------CVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELA 335 (479)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 335 (479)
|++.+ .+.+.++..+...+++|++|++.+ |+.+++.++..+...+++|++|+++. +.+++.++..+.
T Consensus 323 L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~ 399 (592)
T 3ogk_B 323 LETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLESIG 399 (592)
T ss_dssp EEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHHHHH
T ss_pred EeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHHHHH
Confidence 99984 577778888888899999999995 78898888888777789999999954 789999998888
Q ss_pred HcCCCccEEeccc---cCCCCh----hHHHHHHHhCCCccEEeccCCC-CccHHHHHHHHHhCCCCcEEEecCCCCCHHH
Q psy5339 336 KLGATLRYLSVAK---CDQVSD----AGLKVIARRCYKLRYLNARGCE-AVSDDAITVLARSCTRLRALDIGKCDVSDAG 407 (479)
Q Consensus 336 ~~~~~L~~L~l~~---~~~l~~----~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~ 407 (479)
..+++|++|++++ |+.+++ .++..+...+++|++|++++|. .+++..+..+...+++|+.|++++|++++.+
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 479 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH
Confidence 8888999999973 567775 4777788889999999998765 4788888888888999999999999999999
Q ss_pred HHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccChHHHHHHHHhhhhcceeccCC
Q psy5339 408 LRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCIIEHTNP 476 (479)
Q Consensus 408 ~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~~i~~~~~ 476 (479)
+..+...+++|++|++++|+ +++.++..+...+++|+.|++++|++++.+++.+.+.+|.+++.++..
T Consensus 480 ~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 99998889999999999996 888888888888999999999999999999999999999988876653
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.1e-34 Score=289.01 Aligned_cols=412 Identities=22% Similarity=0.308 Sum_probs=329.2
Q ss_pred cchhcccCCCCCcccccccccccc-cccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhh---Hhhhhh
Q psy5339 13 QLLLQFLDLTDCSCIQISCLTASP-TQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIG---IKYVPS 88 (479)
Q Consensus 13 ~~~L~~L~ls~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~ 88 (479)
...|++|++++|.+... ....+. .+++|++|++++|..+++..+..+..++++|++|++++| .+++.+ +..+..
T Consensus 104 ~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-DVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC-EEECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC-ccCCcchHHHHHHhh
Confidence 44688999988853332 223333 578999999999977888888888889999999999997 466544 444555
Q ss_pred cCCCCcEEEeecCc-ccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccc-cchh---HHHH
Q psy5339 89 FCSQLKELSVSDCT-QVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEA-VSDD---AITV 163 (479)
Q Consensus 89 ~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~-~~~~---~~~~ 163 (479)
.+++|++|+++++. .++...+..+...+++|++|++++|..+ .++..+...+++|++|.+..+.. .... .+..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH--HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH--HHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 78899999999865 4667778888888999999999987443 44778888999999999876542 2222 2233
Q ss_pred HHHhcCccceE-EcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHh
Q psy5339 164 LARSCTRLRAL-DIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKK 242 (479)
Q Consensus 164 ~~~~~~~L~~L-~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 242 (479)
....+++|+.| .+.+ .....+..+...+++|++|+++++. +++..+..++..+++|++|++++| +.+.++..+..
T Consensus 260 ~l~~~~~L~~Ls~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~ 335 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWD--AVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAS 335 (594)
T ss_dssp HHHTCTTCCEEECCBT--CCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHH
T ss_pred HHhcCCCcccccCCcc--cchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHH
Confidence 44667899988 3433 2333444455568999999999986 888888888889999999999998 66666666654
Q ss_pred hhccccccccccccCCcccceeEEec--------CCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCC
Q psy5339 243 YCKRCCIQISCLTASPTQLLLQFLDL--------TDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQ 314 (479)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~L~~L~l--------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 314 (479)
.. ++|++|++ .++..+.+.++..+...+++|+.|.+.. +.+++..+..+...+++
T Consensus 336 ~~----------------~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~ 398 (594)
T 2p1m_B 336 TC----------------KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIARNRPN 398 (594)
T ss_dssp HC----------------TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTT
T ss_pred hC----------------CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHhhCCC
Confidence 32 24999999 4456788888888877899999997655 88999888888777899
Q ss_pred CcEEecc-----CCCCCC----cHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHH
Q psy5339 315 LKELSVS-----DCTQVT----DFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITV 385 (479)
Q Consensus 315 L~~L~l~-----~~~~~~----~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 385 (479)
|++|+++ +|+.++ +.++..+...+++|++|++++ .+++.++..+...+++|+.|++++|. +++.++..
T Consensus 399 L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~ 475 (594)
T 2p1m_B 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHH 475 (594)
T ss_dssp CCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHH
T ss_pred cceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHH
Confidence 9999999 567888 678888888889999999975 78999999888889999999999976 78888888
Q ss_pred HHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccc
Q psy5339 386 LARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQ 453 (479)
Q Consensus 386 l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 453 (479)
+...+++|++|++++|++++.++..+...+++|++|++++|+ ++..++..+...+|+|+...+..+.
T Consensus 476 l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 476 VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS-VSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC-CBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred HHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC-CCHHHHHHHHHhCCCCEEEEecCCC
Confidence 878899999999999999999998888889999999999995 5888888888888999877776654
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.1e-33 Score=281.71 Aligned_cols=415 Identities=19% Similarity=0.263 Sum_probs=329.4
Q ss_pred cchhcccCCCCCcccccc-----ccc--------c-cccccccceeccCCCCCCchhhHHHHHhcCCc-ccEEecccccc
Q psy5339 13 QLLLQFLDLTDCSCIQIS-----CLT--------A-SPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQ-LIYLYLRRCVK 77 (479)
Q Consensus 13 ~~~L~~L~ls~~~~~~~~-----~~~--------~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~ 77 (479)
...|++|++++|...... .+. . ...+++|++|++++| .+.+..+..+...+++ |++|++++|..
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCC
Confidence 445899999887422100 000 1 126789999999998 6887776666555666 99999999877
Q ss_pred cchhhHhhhhhcCCCCcEEEeecCcccCcHH---HHHHHHhCCCccEEecCCCCC--CChHHHHHHHHhCCccceeeccC
Q psy5339 78 LTDIGIKYVPSFCSQLKELSVSDCTQVTDFG---LYELAKLGATLRYLSVAKCDQ--VSDAGLKVIARRCYKLRYLNARG 152 (479)
Q Consensus 78 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~--~~~~~l~~l~~~~~~L~~L~l~~ 152 (479)
++..++..+...+++|++|++++| .+++.+ +..+...+++|++|+++++.. +....+..+...+++|++|++.+
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred cCHHHHHHHHhhCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 888788888888999999999986 444333 666778899999999987532 35677888888999999999998
Q ss_pred ccccchhHHHHHHHhcCccceEEcCCcc-------------------------cCHHHHHHHHHcCCCCcEEecCCCCCc
Q psy5339 153 CEAVSDDAITVLARSCTRLRALDIGKCD-------------------------VSDAGLRALAESCPNIKKLSLRQCDLV 207 (479)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------------------~~~~~~~~l~~~~~~L~~L~l~~~~~~ 207 (479)
+.... +......+++|++|++++.. .....+..+...+++|++|+++++. +
T Consensus 230 ~~~~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l 305 (592)
T 3ogk_B 230 FEILE---LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-L 305 (592)
T ss_dssp CBGGG---GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-C
T ss_pred ccHHH---HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-C
Confidence 65332 33555667888888886421 1122344455668899999999985 8
Q ss_pred ChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCC----------CCCCChh
Q psy5339 208 TDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTD----------CSNVDDQ 277 (479)
Q Consensus 208 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~~~~~ 277 (479)
++..+..++..+++|++|+++ +.+.+.++..+...+ ++|++|++++ |+.+.+.
T Consensus 306 ~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~----------------~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 306 ETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYC----------------KQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp CHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHC----------------TTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred CHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhC----------------CCCCEEEeecCccccccccccCccCHH
Confidence 888888888899999999999 666777776665433 2499999995 7889988
Q ss_pred hHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccC---CCCCCc----HHHHHHHHcCCCccEEeccccC
Q psy5339 278 GLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSD---CTQVTD----FGLYELAKLGATLRYLSVAKCD 350 (479)
Q Consensus 278 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~---~~~~~~----~~~~~l~~~~~~L~~L~l~~~~ 350 (479)
++..+...+++|++|++.. +.+++..+..+...+++|++|++++ |+.+++ .++..+...+++|++|++++|.
T Consensus 369 ~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~ 447 (592)
T 3ogk_B 369 GLIALAQGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ 447 (592)
T ss_dssp HHHHHHHHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred HHHHHHhhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence 8888888899999999955 8899988888877789999999973 567776 4677778888999999998755
Q ss_pred -CCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCccc
Q psy5339 351 -QVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLV 429 (479)
Q Consensus 351 -~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l 429 (479)
.+++.++..+...+++|+.|++++|. +++.++..+...+++|++|++++|++++.++..+...+++|++|++++|. +
T Consensus 448 ~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-i 525 (592)
T 3ogk_B 448 GGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-A 525 (592)
T ss_dssp GGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-C
T ss_pred CCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-C
Confidence 48888898888889999999999875 88888888888899999999999999999999888889999999999995 8
Q ss_pred chhhHHHHHHcCccccEEEecccc
Q psy5339 430 TDRGVQCIAYYCRGLQQLNIQDCQ 453 (479)
Q Consensus 430 ~~~~~~~~~~~~~~L~~L~l~~~~ 453 (479)
++.++..+...+|.++...+..++
T Consensus 526 t~~~~~~l~~~~p~l~~~~~~~~~ 549 (592)
T 3ogk_B 526 SMTGQDLMQMARPYWNIELIPSRR 549 (592)
T ss_dssp CTTCTTGGGGCCTTEEEEEECCC-
T ss_pred CHHHHHHHHHhCCCcEEEEecCcc
Confidence 998888887888888877776653
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.1e-31 Score=258.75 Aligned_cols=408 Identities=22% Similarity=0.290 Sum_probs=211.3
Q ss_pred ccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhh---hhhcCCCCcEEEeecCcccCcHHHHHHHHhC
Q psy5339 40 LLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKY---VPSFCSQLKELSVSDCTQVTDFGLYELAKLG 116 (479)
Q Consensus 40 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 116 (479)
+|++|+++++ .+.+..+..++..+++|++|++++| .+++..... ....+++|++|++++ +.+++.+...+...+
T Consensus 4 ~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 4 DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRS-NELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTT-CCCHHHHHHHHHHTT
T ss_pred cceehhhhhc-ccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCC-CcCChHHHHHHHHHH
Confidence 3444444443 3444444443444444444444443 333332111 122234444444444 234433333333333
Q ss_pred C----CccEEecCCCCCCChHH---HHHHHHhCCccceeeccCccccchhHHHHHHHh----cCccceEEcCCcccCHHH
Q psy5339 117 A----TLRYLSVAKCDQVSDAG---LKVIARRCYKLRYLNARGCEAVSDDAITVLARS----CTRLRALDIGKCDVSDAG 185 (479)
Q Consensus 117 ~----~L~~L~l~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~ 185 (479)
+ +|++|+++++ .+++.+ +......+++|++|+++++. +.+..+..+... .++|++|++++|.+++..
T Consensus 81 ~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp CSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred hhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 3 3444444443 233221 22222334445555554432 222223222221 124555555555444322
Q ss_pred HH---HHHHcCCCCcEEecCCCCCcChHHHHHHHh----hCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCC
Q psy5339 186 LR---ALAESCPNIKKLSLRQCDLVTDRGVQCIAY----YCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASP 258 (479)
Q Consensus 186 ~~---~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (479)
.. .....+++|++|+++++ .+.+.++..+.. ..++|++|++++|.+...+...+.....
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~------------- 224 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA------------- 224 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-------------
T ss_pred HHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-------------
Confidence 21 12222455555555544 233333332222 1335555555555555444333332211
Q ss_pred cccceeEEecCCCCCCChhhHHHHH----hcCCCccEEEeccCCccCcchhcccc---ccCCCCcEEeccCCCCCCcHHH
Q psy5339 259 TQLLLQFLDLTDCSNVDDQGLSLIV----SNCPQLIYLYLRRCVKLTDIGIKYVP---SFCSQLKELSVSDCTQVTDFGL 331 (479)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~ 331 (479)
..++|++|+++++ .+.+.+...+. ..+++|+.|++++ +.+++.+...+. ..+++|++|++++| .+++.+.
T Consensus 225 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~ 301 (461)
T 1z7x_W 225 SKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWE-CGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGA 301 (461)
T ss_dssp HCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTT-SCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHH
T ss_pred hCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcC-CCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHH
Confidence 1123555555553 33333332222 1356777777777 356665433332 23477777777774 6666655
Q ss_pred HHHHHc----CCCccEEeccccCCCChhHHH---HHHHhCCCccEEeccCCCCccHHHHHHHHHh----CCCCcEEEecC
Q psy5339 332 YELAKL----GATLRYLSVAKCDQVSDAGLK---VIARRCYKLRYLNARGCEAVSDDAITVLARS----CTRLRALDIGK 400 (479)
Q Consensus 332 ~~l~~~----~~~L~~L~l~~~~~l~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~ 400 (479)
..+... .++|++|++++| .+++.+.. .....+++|++|++++| .+++.+...+... .++|++|++++
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCC
Confidence 554442 257888888874 46655433 33345788999999886 5777666655533 56899999999
Q ss_pred CCCCHHHHHHHHh---hCCCCcEEeccCCcccchhhHHHHHHcCc----cccEEEecccccC---hHHHHHHHHhhhhcc
Q psy5339 401 CDVSDAGLRALAE---SCPNIKKLSLRQCDLVTDRGVQCIAYYCR----GLQQLNIQDCQIS---VEGYRAVKKYCKRCI 470 (479)
Q Consensus 401 ~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~~~~~----~L~~L~l~~~~i~---~~~~~~l~~~~~~~~ 470 (479)
|.++++++..+.. .+++|++|++++| .+++.++..+...++ +|+.|++.++... .+.++.+.+..|.+.
T Consensus 380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~ 458 (461)
T 1z7x_W 380 CDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR 458 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSE
T ss_pred CCCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcE
Confidence 9999876665543 4889999999999 678877776665443 5888888877655 455666777777776
Q ss_pred ee
Q psy5339 471 IE 472 (479)
Q Consensus 471 i~ 472 (479)
|.
T Consensus 459 i~ 460 (461)
T 1z7x_W 459 VI 460 (461)
T ss_dssp EE
T ss_pred ee
Confidence 53
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=3.1e-31 Score=255.65 Aligned_cols=410 Identities=23% Similarity=0.305 Sum_probs=310.2
Q ss_pred chhcccCCCCCcccccccccccccccccceeccCCCCCCchh---hHHHHHhcCCcccEEecccccccchhhHhhhhhcC
Q psy5339 14 LLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQ---GLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFC 90 (479)
Q Consensus 14 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 90 (479)
..|++||++++.+........+..+++|++|++++| .+++. .++..+..+++|++|++++ +.+++.+...+...+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRS-NELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTT-CCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCC-CcCChHHHHHHHHHH
Confidence 467899999997655544444778899999999998 57765 4566678889999999999 588887777777767
Q ss_pred C----CCcEEEeecCcccCcHHHHHH---HHhCCCccEEecCCCCCCChHHHHHHHHh----CCccceeeccCccccchh
Q psy5339 91 S----QLKELSVSDCTQVTDFGLYEL---AKLGATLRYLSVAKCDQVSDAGLKVIARR----CYKLRYLNARGCEAVSDD 159 (479)
Q Consensus 91 ~----~L~~L~l~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~l~~l~~~----~~~L~~L~l~~~~~~~~~ 159 (479)
+ +|++|++++| .+++.++..+ ...+++|++|+++++ .+++.+...+... .++|++|+++++. +...
T Consensus 81 ~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~ 157 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAA 157 (461)
T ss_dssp CSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGG
T ss_pred hhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHH
Confidence 6 7999999985 6776554443 456789999999985 4777777666554 4579999999884 3333
Q ss_pred H---HHHHHHhcCccceEEcCCcccCHHHHHHHHH----cCCCCcEEecCCCCCcChHH---HHHHHhhCCCCcEEEccC
Q psy5339 160 A---ITVLARSCTRLRALDIGKCDVSDAGLRALAE----SCPNIKKLSLRQCDLVTDRG---VQCIAYYCRGLQQLNIQD 229 (479)
Q Consensus 160 ~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~ 229 (479)
. +......+++|++|++++|.+++.....+.. ..++|+.|+++++ .++..+ +...+..+++|++|++++
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 3 3444556799999999999998877766654 3469999999998 565543 555667899999999999
Q ss_pred cccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhh---HHHHHhcCCCccEEEeccCCccCcchhc
Q psy5339 230 CQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQG---LSLIVSNCPQLIYLYLRRCVKLTDIGIK 306 (479)
Q Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 306 (479)
|.+.+.++..+..... ...++|++|++++| .+.+.+ +...+..+++|+.|++++ +.+++.+..
T Consensus 237 n~l~~~~~~~l~~~~~------------~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~ 302 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLL------------HPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGAR 302 (461)
T ss_dssp SBCHHHHHHHHHHHHT------------STTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHH
T ss_pred CcCChHHHHHHHHHHh------------cCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCC-CCCchHHHH
Confidence 9999888877765332 12346999999996 677665 334445689999999999 578777665
Q ss_pred ccccc----CCCCcEEeccCCCCCCcHHHH---HHHHcCCCccEEeccccCCCChhHHHHHHHh----CCCccEEeccCC
Q psy5339 307 YVPSF----CSQLKELSVSDCTQVTDFGLY---ELAKLGATLRYLSVAKCDQVSDAGLKVIARR----CYKLRYLNARGC 375 (479)
Q Consensus 307 ~l~~~----~~~L~~L~l~~~~~~~~~~~~---~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~----~~~L~~L~l~~~ 375 (479)
.+... .++|++|++++| .+++.+.. .....+++|++|++++ +.+++.++..+... .++|++|++++|
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccC-CccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 55433 259999999996 67766533 3445568999999999 57888877766653 579999999997
Q ss_pred CCccHHHHHH---HHHhCCCCcEEEecCCCCCHHHHHHHHhhCC----CCcEEeccCCcccch---hhHHHHHHcCcccc
Q psy5339 376 EAVSDDAITV---LARSCTRLRALDIGKCDVSDAGLRALAESCP----NIKKLSLRQCDLVTD---RGVQCIAYYCRGLQ 445 (479)
Q Consensus 376 ~~~~~~~~~~---l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~----~L~~L~l~~~~~l~~---~~~~~~~~~~~~L~ 445 (479)
.+++.++.. ....+++|++|++++|++++.++..+.+.++ +|+.|.+.++. ... ..+..+....|+|+
T Consensus 381 -~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~-~~~~~~~~l~~l~~~~p~l~ 458 (461)
T 1z7x_W 381 -DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY-WSEEMEDRLQALEKDKPSLR 458 (461)
T ss_dssp -CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC-CCHHHHHHHHHHHHHCTTSE
T ss_pred -CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc-cCHHHHHHHHHHhccCCCcE
Confidence 477755443 3356899999999999999999998887554 59999998874 332 44555666778887
Q ss_pred EE
Q psy5339 446 QL 447 (479)
Q Consensus 446 ~L 447 (479)
.+
T Consensus 459 i~ 460 (461)
T 1z7x_W 459 VI 460 (461)
T ss_dssp EE
T ss_pred ee
Confidence 65
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.4e-28 Score=250.68 Aligned_cols=135 Identities=18% Similarity=0.075 Sum_probs=72.7
Q ss_pred CCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCC
Q psy5339 313 SQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTR 392 (479)
Q Consensus 313 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 392 (479)
++|+.|++++| .++.. +......+++|++|+++++ .++...... ...+++|+.|++++|..... +......+++
T Consensus 394 ~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~ 467 (768)
T 3rgz_A 394 NTLQELYLQNN-GFTGK-IPPTLSNCSELVSLHLSFN-YLSGTIPSS-LGSLSKLRDLKLWLNMLEGE--IPQELMYVKT 467 (768)
T ss_dssp CCCCEEECCSS-EEEEE-CCGGGGGCTTCCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCCCSC--CCGGGGGCTT
T ss_pred CCccEEECCCC-ccccc-cCHHHhcCCCCCEEECcCC-cccCcccHH-HhcCCCCCEEECCCCcccCc--CCHHHcCCCC
Confidence 45566666554 33221 1111233456777777663 232211111 23567777777777643211 1111235778
Q ss_pred CcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccCh
Q psy5339 393 LRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISV 456 (479)
Q Consensus 393 L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~ 456 (479)
|++|++++|.++......+. .+++|++|++++|. ++..... .+..+++|+.|++++|+++.
T Consensus 468 L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~-l~~~~p~-~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNR-LTGEIPK-WIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSC-CCSCCCG-GGGGCTTCCEEECCSSCCEE
T ss_pred ceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCc-cCCcCCh-HHhcCCCCCEEECCCCcccC
Confidence 88888888876643323333 47888888888883 4432211 12456788888888887653
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=2e-27 Score=237.06 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=43.2
Q ss_pred hCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCc
Q psy5339 363 RCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCR 442 (479)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 442 (479)
.+++|++|++++|. ++... ......+++|++|++++|++++.....+. .+++| .|++++| .++..... .+..++
T Consensus 474 ~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L-~L~L~~N-~l~~~~~~-~~~~l~ 547 (606)
T 3t6q_A 474 TLGRLEILVLSFCD-LSSID-QHAFTSLKMMNHVDLSHNRLTSSSIEALS-HLKGI-YLNLASN-HISIILPS-LLPILS 547 (606)
T ss_dssp GCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECCSSCCCGGGGGGGT-TCCSC-EEECCSS-CCCCCCGG-GHHHHH
T ss_pred cCCCccEEECCCCc-cCccC-hhhhccccCCCEEECCCCccCcCChhHhC-ccccc-EEECcCC-cccccCHh-hcccCC
Confidence 45566666666543 22110 01112456666666666666554433333 25556 6666666 34432211 123346
Q ss_pred cccEEEecccccC
Q psy5339 443 GLQQLNIQDCQIS 455 (479)
Q Consensus 443 ~L~~L~l~~~~i~ 455 (479)
+|+.|++++|+++
T Consensus 548 ~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 548 QQRTINLRQNPLD 560 (606)
T ss_dssp TSSEEECTTCCEE
T ss_pred CCCEEeCCCCCcc
Confidence 6777777777643
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1.8e-27 Score=242.56 Aligned_cols=159 Identities=17% Similarity=0.074 Sum_probs=105.9
Q ss_pred CCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCC
Q psy5339 286 CPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCY 365 (479)
Q Consensus 286 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 365 (479)
+++|+.|++++ +.+.......+ ..+++|+.|++++| .++.... .....+++|+.|+++++ .+....... ...++
T Consensus 393 ~~~L~~L~L~~-n~l~~~~p~~l-~~l~~L~~L~Ls~N-~l~~~~p-~~l~~l~~L~~L~L~~n-~l~~~~p~~-~~~l~ 466 (768)
T 3rgz_A 393 KNTLQELYLQN-NGFTGKIPPTL-SNCSELVSLHLSFN-YLSGTIP-SSLGSLSKLRDLKLWLN-MLEGEIPQE-LMYVK 466 (768)
T ss_dssp TCCCCEEECCS-SEEEEECCGGG-GGCTTCCEEECCSS-EEESCCC-GGGGGCTTCCEEECCSS-CCCSCCCGG-GGGCT
T ss_pred cCCccEEECCC-CccccccCHHH-hcCCCCCEEECcCC-cccCccc-HHHhcCCCCCEEECCCC-cccCcCCHH-HcCCC
Confidence 56777888777 35544333333 34589999999996 4443211 22344679999999984 444221112 23679
Q ss_pred CccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCcccc
Q psy5339 366 KLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQ 445 (479)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 445 (479)
+|++|++++|..... +......+++|++|++++|.+++.....+. .+++|++|++++|. ++.... ..+..+++|+
T Consensus 467 ~L~~L~L~~N~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~-l~~~~p-~~l~~l~~L~ 541 (768)
T 3rgz_A 467 TLETLILDFNDLTGE--IPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNS-FSGNIP-AELGDCRSLI 541 (768)
T ss_dssp TCCEEECCSSCCCSC--CCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSC-CEEECC-GGGGGCTTCC
T ss_pred CceEEEecCCcccCc--CCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCc-ccCcCC-HHHcCCCCCC
Confidence 999999999754321 122234689999999999998754434444 48999999999994 443221 2235789999
Q ss_pred EEEecccccC
Q psy5339 446 QLNIQDCQIS 455 (479)
Q Consensus 446 ~L~l~~~~i~ 455 (479)
.|++++|+++
T Consensus 542 ~L~Ls~N~l~ 551 (768)
T 3rgz_A 542 WLDLNTNLFN 551 (768)
T ss_dssp EEECCSSEEE
T ss_pred EEECCCCccC
Confidence 9999999865
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=9.8e-27 Score=232.01 Aligned_cols=112 Identities=21% Similarity=0.062 Sum_probs=62.7
Q ss_pred CcccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhc
Q psy5339 10 SPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSF 89 (479)
Q Consensus 10 ~~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 89 (479)
+.....|++|++++|.+..+. ...|..+++|++|++++| .+.... +..++++++|++|++++| .++...... ...
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~-~~~~~~l~~L~~L~Ls~n-~l~~~~-p~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~ 126 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGN-PIQSFS-PGSFSGLTSLENLVAVET-KLASLESFP-IGQ 126 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTC-CCCCCC-TTSSTTCTTCCEEECTTS-CCCCSSSSC-CTT
T ss_pred ccCCccCcEEeCCCCcccccC-HHHhhchhhcCEeECCCC-cccccC-hhhcCCcccCCEEEccCC-ccccccccc-cCC
Confidence 445567788888877544432 234667777888888776 343321 233466777777777774 444322112 234
Q ss_pred CCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCC
Q psy5339 90 CSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKC 127 (479)
Q Consensus 90 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 127 (479)
+++|++|+++++ .++...++.....+++|++|+++++
T Consensus 127 l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 127 LITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCC
Confidence 566777777663 3332222223344566677666654
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.92 E-value=5.8e-27 Score=233.65 Aligned_cols=410 Identities=19% Similarity=0.149 Sum_probs=246.8
Q ss_pred cCcccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhh
Q psy5339 9 ASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPS 88 (479)
Q Consensus 9 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 88 (479)
++.....|++|++++|.+..+. ...|..+++|++|++++| .+... .+..++.+++|++|+++++ .++......+ .
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~-~ 126 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIH-EDTFQSQHRLDTLVLTAN-PLIFM-AETALSGPKALKHLFFIQT-GISSIDFIPL-H 126 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTC-CCSEE-CTTTTSSCTTCCEEECTTS-CCSCGGGSCC-T
T ss_pred HhccCccceEEECCCCccceeC-hhhccCccccCeeeCCCC-ccccc-ChhhhcccccccEeecccc-CcccCCcchh-c
Confidence 3556667888888888544432 234677778888888876 34321 1233466777777777773 5554322222 3
Q ss_pred cCCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccc--eeeccCccccc---------
Q psy5339 89 FCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLR--YLNARGCEAVS--------- 157 (479)
Q Consensus 89 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~--~L~l~~~~~~~--------- 157 (479)
.+++|++|+++++ .++......+.. +++|++|+++++ .+..... .....+++|+ .|+++++....
T Consensus 127 ~l~~L~~L~L~~n-~l~~~~~~~~~~-l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~ 202 (606)
T 3t6q_A 127 NQKTLESLYLGSN-HISSIKLPKGFP-TEKLKVLDFQNN-AIHYLSK-EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202 (606)
T ss_dssp TCTTCCEEECCSS-CCCCCCCCTTCC-CTTCCEEECCSS-CCCEECH-HHHHTTTTCCSEEEECTTCCCCEECTTTTTTC
T ss_pred cCCcccEEECCCC-cccccCcccccC-CcccCEEEcccC-cccccCh-hhhhhhcccceeEEecCCCccCccChhHhhhc
Confidence 4566777777663 333221112112 456666666553 2221111 1122344444 34443322100
Q ss_pred ----------------------------------------------------------------hhHHHHHHHhcCccce
Q psy5339 158 ----------------------------------------------------------------DDAITVLARSCTRLRA 173 (479)
Q Consensus 158 ----------------------------------------------------------------~~~~~~~~~~~~~L~~ 173 (479)
.......+..+++|++
T Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 282 (606)
T 3t6q_A 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282 (606)
T ss_dssp EEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred cccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCE
Confidence 0000111334589999
Q ss_pred EEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccc
Q psy5339 174 LDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISC 253 (479)
Q Consensus 174 L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (479)
|+++++.++. +......+++|+.|+++++. +.... ...+..+++|+.|++++|.+......
T Consensus 283 L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~--------------- 343 (606)
T 3t6q_A 283 LDLTATHLSE--LPSGLVGLSTLKKLVLSANK-FENLC-QISASNFPSLTHLSIKGNTKRLELGT--------------- 343 (606)
T ss_dssp EECTTSCCSC--CCSSCCSCTTCCEEECTTCC-CSBGG-GGCGGGCTTCSEEECCSCSSCCBCCS---------------
T ss_pred EeccCCccCC--CChhhcccccCCEEECccCC-cCcCc-hhhhhccCcCCEEECCCCCcccccch---------------
Confidence 9999998763 11123457899999999873 43322 23456889999999999975421100
Q ss_pred cccCCcccceeEEecCCCCCCChhh-HHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHH
Q psy5339 254 LTASPTQLLLQFLDLTDCSNVDDQG-LSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLY 332 (479)
Q Consensus 254 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 332 (479)
......++|++|+++++ .+.... ....+..+++|+.|++++ +.+.......+. .+++|++|++++| .++.....
T Consensus 344 -~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~ 418 (606)
T 3t6q_A 344 -GCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSY-NEPLSLKTEAFK-ECPQLELLDLAFT-RLKVKDAQ 418 (606)
T ss_dssp -STTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCS-CSCEEECTTTTT-TCTTCSEEECTTC-CEECCTTC
T ss_pred -hhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCC-CcCCcCCHHHhc-CCccCCeEECCCC-cCCCcccc
Confidence 01234557999999985 343322 122235789999999999 566655444443 3489999999996 44433222
Q ss_pred HHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHH--HHHHHhCCCCcEEEecCCCCCHHHHHH
Q psy5339 333 ELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAI--TVLARSCTRLRALDIGKCDVSDAGLRA 410 (479)
Q Consensus 333 ~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~i~~~~~~~ 410 (479)
.....+++|++|+++++ .++...... ...+++|++|++++|.. +...+ ......+++|++|++++|.+++.....
T Consensus 419 ~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 495 (606)
T 3t6q_A 419 SPFQNLHLLKVLNLSHS-LLDISSEQL-FDGLPALQHLNLQGNHF-PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495 (606)
T ss_dssp CTTTTCTTCCEEECTTC-CCBTTCTTT-TTTCTTCCEEECTTCBC-GGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred hhhhCcccCCEEECCCC-ccCCcCHHH-HhCCCCCCEEECCCCCC-CccccccchhhccCCCccEEECCCCccCccChhh
Confidence 22345679999999984 444332222 23679999999999753 32111 112346899999999999987644344
Q ss_pred HHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccChHH
Q psy5339 411 LAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEG 458 (479)
Q Consensus 411 l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 458 (479)
+. .+++|++|++++| .++...... ...++.| .|++++|+++...
T Consensus 496 ~~-~l~~L~~L~Ls~N-~l~~~~~~~-l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 496 FT-SLKMMNHVDLSHN-RLTSSSIEA-LSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp TT-TCTTCCEEECCSS-CCCGGGGGG-GTTCCSC-EEECCSSCCCCCC
T ss_pred hc-cccCCCEEECCCC-ccCcCChhH-hCccccc-EEECcCCcccccC
Confidence 43 4899999999999 566654433 3567899 9999999977543
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=1e-25 Score=222.03 Aligned_cols=80 Identities=14% Similarity=0.134 Sum_probs=52.2
Q ss_pred CCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccc
Q psy5339 365 YKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGL 444 (479)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 444 (479)
++|+.|++++|. ++. +...+++|++|++++|+++. +... ..+++|++|++++| .++..... .+..+++|
T Consensus 431 ~~L~~L~Ls~N~-l~~-----~~~~l~~L~~L~Ls~N~l~~--ip~~-~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L 499 (549)
T 2z81_A 431 QTLEVLDVSNNN-LDS-----FSLFLPRLQELYISRNKLKT--LPDA-SLFPVLLVMKISRN-QLKSVPDG-IFDRLTSL 499 (549)
T ss_dssp TTCSEEECCSSC-CSC-----CCCCCTTCCEEECCSSCCSS--CCCG-GGCTTCCEEECCSS-CCCCCCTT-GGGGCTTC
T ss_pred CCceEEECCCCC-hhh-----hcccCChhcEEECCCCccCc--CCCc-ccCccCCEEecCCC-ccCCcCHH-HHhcCccc
Confidence 456666666653 221 11357888888888888762 2222 24788999999998 55543222 23567899
Q ss_pred cEEEecccccC
Q psy5339 445 QQLNIQDCQIS 455 (479)
Q Consensus 445 ~~L~l~~~~i~ 455 (479)
+.|++++|+++
T Consensus 500 ~~L~l~~N~~~ 510 (549)
T 2z81_A 500 QKIWLHTNPWD 510 (549)
T ss_dssp CEEECCSSCBC
T ss_pred CEEEecCCCcc
Confidence 99999999854
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=1e-26 Score=230.42 Aligned_cols=417 Identities=18% Similarity=0.149 Sum_probs=238.3
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.+++||+++|.+..+.. ..+..+++|++|++++| .+.... +..+.++++|++|+++++ .++...... ...+++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n-~i~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~ 103 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGN-PIQSLALGA-FSGLSSLQ 103 (570)
T ss_dssp SCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTC-CCCEECTTT-TTTCTTCC
T ss_pred cccEEEccCCccCccCh-hHhhCCCCceEEECCCC-cCCccC-cccccCchhCCEEeCcCC-cCCccCHhh-hcCccccc
Confidence 57888988886554432 34777888888888887 454322 234567888888888884 565433222 34467888
Q ss_pred EEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccc--hhHHHHHHHh-----
Q psy5339 95 ELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVS--DDAITVLARS----- 167 (479)
Q Consensus 95 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~----- 167 (479)
+|+++++ .++...... ...+++|++|+++++. +....++.....+++|++|+++++.... ...+..+...
T Consensus 104 ~L~L~~n-~l~~l~~~~-~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 104 KLVAVET-NLASLENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp EEECTTS-CCCCSTTCS-CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred ccccccc-ccccCCCcc-ccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence 8888774 344321111 2345778888887642 2221122224466777888777654211 1122222110
Q ss_pred ------------------cCccceEEcCCcccCHHHHH------------------------------------------
Q psy5339 168 ------------------CTRLRALDIGKCDVSDAGLR------------------------------------------ 187 (479)
Q Consensus 168 ------------------~~~L~~L~l~~~~~~~~~~~------------------------------------------ 187 (479)
..+|++|+++++......+.
T Consensus 181 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred hcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 01234444433311100000
Q ss_pred ---------------HHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhH---HHHhhhccccc
Q psy5339 188 ---------------ALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYR---AVKKYCKRCCI 249 (479)
Q Consensus 188 ---------------~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~~~~~ 249 (479)
.....+++|+.|+++++. +. .++..+..+ +|++|++++|.+...... .+..+....+.
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~--~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IE--RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-EC--SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCB
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCcc-ch--hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCc
Confidence 111234677788777652 22 122223344 777777777765421110 00000000000
Q ss_pred cccccccCCcccceeEEecCCCCCCChhh-HHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCc
Q psy5339 250 QISCLTASPTQLLLQFLDLTDCSNVDDQG-LSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTD 328 (479)
Q Consensus 250 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 328 (479)
+.........++|++|+++++ .+.... .......+++|+.|++++ +.+...... + ..+++|++|++++| .+..
T Consensus 337 -~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~-~-~~l~~L~~L~l~~n-~l~~ 410 (570)
T 2z63_A 337 -GGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSN-F-LGLEQLEHLDFQHS-NLKQ 410 (570)
T ss_dssp -SCCBCCCCBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCS-CSEEEEEEE-E-ETCTTCCEEECTTS-EEES
T ss_pred -cccccccccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCC-Ccccccccc-c-cccCCCCEEEccCC-cccc
Confidence 111111245678999999885 343321 122345789999999998 455554333 3 34589999999985 4443
Q ss_pred HHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q psy5339 329 FGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGL 408 (479)
Q Consensus 329 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 408 (479)
.........+++|++|+++++ .+..... .....+++|++|++++|. +++..+......+++|++|++++|.+++...
T Consensus 411 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 487 (570)
T 2z63_A 411 MSEFSVFLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487 (570)
T ss_dssp CTTSCTTTTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred ccchhhhhcCCCCCEEeCcCC-cccccch-hhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCCh
Confidence 222122345679999999985 3333211 222467999999999975 3321122233468999999999999876544
Q ss_pred HHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccC
Q psy5339 409 RALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 409 ~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 455 (479)
..+. .+++|++|++++| .++..... .+..+++|+.|++++|+++
T Consensus 488 ~~~~-~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 488 TAFN-SLSSLQVLNMASN-QLKSVPDG-IFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp TTTT-TCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred hhhh-cccCCCEEeCCCC-cCCCCCHH-HhhcccCCcEEEecCCccc
Confidence 4444 4899999999999 56654322 2357899999999999865
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=211.04 Aligned_cols=395 Identities=13% Similarity=0.100 Sum_probs=216.0
Q ss_pred chhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCC
Q psy5339 14 LLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQL 93 (479)
Q Consensus 14 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 93 (479)
..|++||+++|.+..+. ...+..+++|++|++++| .+.... +..+.++++|++|++++ +.++. ++.. .+++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~-N~l~~--lp~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNYISELW-TSDILSLSKLRILIISHN-RIQYLD-ISVFKFNQELEYLDLSH-NKLVK--ISCH--PTVNL 92 (520)
T ss_dssp TTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSS-CCCEEE-GGGGTTCTTCCEEECCS-SCCCE--EECC--CCCCC
T ss_pred ccccEEECCCCcccccC-hhhccccccccEEecCCC-ccCCcC-hHHhhcccCCCEEecCC-Cceee--cCcc--ccCCc
Confidence 35677777777544332 123566677777777776 444321 23346667777777777 35553 2222 46777
Q ss_pred cEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCcc--ceeeccCccc--cc--hhHHHH----
Q psy5339 94 KELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKL--RYLNARGCEA--VS--DDAITV---- 163 (479)
Q Consensus 94 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L--~~L~l~~~~~--~~--~~~~~~---- 163 (479)
++|+++++ .++...++.....+++|++|+++++ .+.... ...+++| +.|++.++.. .. ...+..
T Consensus 93 ~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~----~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~ 166 (520)
T 2z7x_B 93 KHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTT-HLEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166 (520)
T ss_dssp SEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEES-SCCGGG----GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEE
T ss_pred cEEeccCC-ccccccchhhhccCCcceEEEecCc-ccchhh----ccccccceeeEEEeecccccccccccccccccccc
Confidence 77777763 3443222222344567777777663 333322 2334555 7777665432 00 000100
Q ss_pred ------------------HHHhcCccceEEcCCcc-------cCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHh-
Q psy5339 164 ------------------LARSCTRLRALDIGKCD-------VSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAY- 217 (479)
Q Consensus 164 ------------------~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~- 217 (479)
....+++|+.|++++|. +.. .+. -...+++|+.|+++++ .+....+..+..
T Consensus 167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~-~l~~l~~L~~L~l~~~-~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS-ILA-KLQTNPKLSNLTLNNI-ETTWNSFIRILQL 243 (520)
T ss_dssp EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH-HHH-GGGGCTTCCEEEEEEE-EEEHHHHHHHHHH
T ss_pred eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec-chh-hhccccchhhcccccc-ccCHHHHHHHHHH
Confidence 00123455555555543 111 111 1233566666666654 333333332221
Q ss_pred -hCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccc--------------------------eeEEecCC
Q psy5339 218 -YCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLL--------------------------LQFLDLTD 270 (479)
Q Consensus 218 -~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------------------L~~L~l~~ 270 (479)
..++|++|++++|.+.......+... .....++ |+.|++++
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~------------~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDY------------SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCC------------CSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEES
T ss_pred hhhCcccEEEeecccccCccccchhhc------------ccccCceeEeccccccceecchhhhhcccccCceeEEEcCC
Confidence 23566666666665432100000000 0022333 44444444
Q ss_pred CCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcH-HHHHHHHcCCCccEEecccc
Q psy5339 271 CSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDF-GLYELAKLGATLRYLSVAKC 349 (479)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~ 349 (479)
+. +..... ...+++|+.|++++ +.+.+.....+ ..+++|+.|++++| .++.. .+......+++|++|++++
T Consensus 312 n~-l~~~~~---~~~l~~L~~L~Ls~-n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~- 383 (520)
T 2z7x_B 312 TR-MVHMLC---PSKISPFLHLDFSN-NLLTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQ- 383 (520)
T ss_dssp SC-CCCCCC---CSSCCCCCEEECCS-SCCCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCS-
T ss_pred Cc-cccccc---hhhCCcccEEEeEC-CccChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCC-
Confidence 32 111110 14678899999988 56666444444 34589999999995 67753 2334455677999999998
Q ss_pred CCCCh-hHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhC-CCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCc
Q psy5339 350 DQVSD-AGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSC-TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCD 427 (479)
Q Consensus 350 ~~l~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 427 (479)
+.++. ... .....+++|++|++++|. ++.... ..+ ++|+.|++++|.++. +..-...+++|++|++++|
T Consensus 384 N~l~~~l~~-~~~~~l~~L~~L~Ls~N~-l~~~~~----~~l~~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L~~N- 454 (520)
T 2z7x_B 384 NSVSYDEKK-GDCSWTKSLLSLNMSSNI-LTDTIF----RCLPPRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASN- 454 (520)
T ss_dssp SCCBCCGGG-CSCCCCTTCCEEECCSSC-CCGGGG----GSCCTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSS-
T ss_pred CcCCccccc-chhccCccCCEEECcCCC-CCcchh----hhhcccCCEEECCCCcccc--cchhhhcCCCCCEEECCCC-
Confidence 44544 221 122356899999999975 432111 123 699999999999872 2221225899999999999
Q ss_pred ccchhhHHHHHHcCccccEEEecccccC
Q psy5339 428 LVTDRGVQCIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 428 ~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 455 (479)
.++..... .+..+++|+.|++++|+++
T Consensus 455 ~l~~l~~~-~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 455 QLKSVPDG-IFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCCCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred cCCccCHH-HhccCCcccEEECcCCCCc
Confidence 56643222 2456799999999999976
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.5e-23 Score=201.52 Aligned_cols=188 Identities=18% Similarity=0.164 Sum_probs=92.0
Q ss_pred chhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCC
Q psy5339 14 LLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQL 93 (479)
Q Consensus 14 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 93 (479)
..++.|+++++.... ++.+..+++|++|++++| .+.... . +..+++|++|+++++ .++... . ...+++|
T Consensus 46 ~~l~~L~l~~~~i~~---l~~~~~l~~L~~L~Ls~n-~l~~~~--~-~~~l~~L~~L~l~~n-~l~~~~--~-~~~l~~L 114 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNN-QLTDIT--P-LKNLTKLVDILMNNN-QIADIT--P-LANLTNL 114 (466)
T ss_dssp HTCCEEECCSSCCCC---CTTGGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCCG--G-GTTCTTC
T ss_pred ccccEEecCCCCCcc---CcchhhhcCCCEEECCCC-ccCCch--h-hhccccCCEEECCCC-ccccCh--h-hcCCCCC
Confidence 346666666664332 233555666777777766 343322 1 466667777777663 444322 1 3446667
Q ss_pred cEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccce
Q psy5339 94 KELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRA 173 (479)
Q Consensus 94 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 173 (479)
++|+++++ .++.... ...+++|++|+++++. +... .. ...+++|++|++.+.. ..... ...+++|++
T Consensus 115 ~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~l~~~~-~~~~~----~~~l~~L~~ 181 (466)
T 1o6v_A 115 TGLTLFNN-QITDIDP---LKNLTNLNRLELSSNT-ISDI--SA-LSGLTSLQQLSFGNQV-TDLKP----LANLTTLER 181 (466)
T ss_dssp CEEECCSS-CCCCCGG---GTTCTTCSEEEEEEEE-ECCC--GG-GTTCTTCSEEEEEESC-CCCGG----GTTCTTCCE
T ss_pred CEEECCCC-CCCCChH---HcCCCCCCEEECCCCc-cCCC--hh-hccCCcccEeecCCcc-cCchh----hccCCCCCE
Confidence 77777664 3333211 3445666666666542 2211 11 2345666666664211 11111 233456666
Q ss_pred EEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCccc
Q psy5339 174 LDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQI 232 (479)
Q Consensus 174 L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 232 (479)
|+++++.+.... . ...+++|+.|+++++. +..... +..+++|+.|++++|.+
T Consensus 182 L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 182 LDISSNKVSDIS--V-LAKLTNLESLIATNNQ-ISDITP---LGILTNLDELSLNGNQL 233 (466)
T ss_dssp EECCSSCCCCCG--G-GGGCTTCSEEECCSSC-CCCCGG---GGGCTTCCEEECCSSCC
T ss_pred EECcCCcCCCCh--h-hccCCCCCEEEecCCc-cccccc---ccccCCCCEEECCCCCc
Confidence 666666544321 1 2335566666665542 221111 23455566666655553
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=3.2e-25 Score=218.49 Aligned_cols=410 Identities=14% Similarity=0.102 Sum_probs=223.2
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.|++||+++|.+..+. ...+..+++|++|++++| .+.... +..+..+++|++|+++++ .++......+ ..+++|+
T Consensus 27 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~ 101 (549)
T 2z81_A 27 AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSS-RINTIE-GDAFYSLGSLEHLDLSDN-HLSSLSSSWF-GPLSSLK 101 (549)
T ss_dssp TCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTS-CCCSCCHHHH-TTCTTCC
T ss_pred CccEEECcCCccCccC-hhhhhcCCcccEEECCCC-CcCccC-hhhccccccCCEEECCCC-ccCccCHHHh-ccCCCCc
Confidence 6888888888654432 234677888888888887 454322 234567788888888884 6665433333 4578888
Q ss_pred EEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceE
Q psy5339 95 ELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRAL 174 (479)
Q Consensus 95 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 174 (479)
+|+++++ .++..+.......+++|++|+++++..++.... .....+++|++|+++++.... .... ....+++|++|
T Consensus 102 ~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~-~l~~l~~L~~L 177 (549)
T 2z81_A 102 YLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLRN-YQSQ-SLKSIRDIHHL 177 (549)
T ss_dssp EEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCE-ECTT-TTTTCSEEEEE
T ss_pred EEECCCC-cccccchhhhhhccCCccEEECCCCccccccCH-hhhhcccccCeeeccCCcccc-cChh-hhhccccCceE
Confidence 8888874 444322222234567888888877542332111 113456778888887654221 1111 12234677777
Q ss_pred EcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHH--HHHHHhhCCCCcEEEccCcccchhhhHHHHhhhcccccccc
Q psy5339 175 DIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRG--VQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQIS 252 (479)
Q Consensus 175 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (479)
+++++...... ..+...+++|+.|+++++. +.... ...+...+++|+.|+++++.+.+..+..+....... ..+.
T Consensus 178 ~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~-~~L~ 254 (549)
T 2z81_A 178 TLHLSESAFLL-EIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI-LELS 254 (549)
T ss_dssp EEECSBSTTHH-HHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC-TTCC
T ss_pred ecccCcccccc-hhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh-cccc
Confidence 77777654322 2223446777777777652 22110 001112345666666666666555554443322110 0000
Q ss_pred c------------------cccCCcc-----------------------------cceeEEecCCCCCCChhhHHHHHhc
Q psy5339 253 C------------------LTASPTQ-----------------------------LLLQFLDLTDCSNVDDQGLSLIVSN 285 (479)
Q Consensus 253 ~------------------~~~~~~~-----------------------------~~L~~L~l~~~~~~~~~~~~~~~~~ 285 (479)
. ....... .+|++|+++++ .+... ...+...
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~i-p~~~~~~ 332 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLV-PCSFSQH 332 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCC-CHHHHHH
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-ccccC-CHHHHhc
Confidence 0 0001112 24555555553 22211 1122245
Q ss_pred CCCccEEEeccCCccCcchhc--cccccCCCCcEEeccCCCCCCcHHH-HHHHHcCCCccEEeccccCCCChhHHHHHHH
Q psy5339 286 CPQLIYLYLRRCVKLTDIGIK--YVPSFCSQLKELSVSDCTQVTDFGL-YELAKLGATLRYLSVAKCDQVSDAGLKVIAR 362 (479)
Q Consensus 286 ~~~L~~L~l~~~~~l~~~~~~--~l~~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 362 (479)
+++|+.|++++ +.+.+.... .....+++|+.|++++| .++.... ......+++|++|+++++ .++. +.....
T Consensus 333 l~~L~~L~Ls~-N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~~~ 407 (549)
T 2z81_A 333 LKSLEFLDLSE-NLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHP--MPDSCQ 407 (549)
T ss_dssp CTTCCEEECCS-SCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCC--CCSCCC
T ss_pred CccccEEEccC-CccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCcc--CChhhc
Confidence 67777777777 455543211 11123467777777774 5555332 233445667777777773 4432 111122
Q ss_pred hCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCc
Q psy5339 363 RCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCR 442 (479)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 442 (479)
.+++|++|++++|. ++. +.. ...++|++|++++|.+++. ...+++|++|++++| .++... . ...++
T Consensus 408 ~~~~L~~L~Ls~N~-l~~--l~~--~~~~~L~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N-~l~~ip--~-~~~l~ 473 (549)
T 2z81_A 408 WPEKMRFLNLSSTG-IRV--VKT--CIPQTLEVLDVSNNNLDSF-----SLFLPRLQELYISRN-KLKTLP--D-ASLFP 473 (549)
T ss_dssp CCTTCCEEECTTSC-CSC--CCT--TSCTTCSEEECCSSCCSCC-----CCCCTTCCEEECCSS-CCSSCC--C-GGGCT
T ss_pred ccccccEEECCCCC-ccc--ccc--hhcCCceEEECCCCChhhh-----cccCChhcEEECCCC-ccCcCC--C-cccCc
Confidence 45677777777764 221 000 0125788888888877642 135888999999999 555321 1 23578
Q ss_pred cccEEEecccccChH
Q psy5339 443 GLQQLNIQDCQISVE 457 (479)
Q Consensus 443 ~L~~L~l~~~~i~~~ 457 (479)
+|+.|++++|+++..
T Consensus 474 ~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 474 VLLVMKISRNQLKSV 488 (549)
T ss_dssp TCCEEECCSSCCCCC
T ss_pred cCCEEecCCCccCCc
Confidence 999999999987753
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=1.1e-25 Score=224.41 Aligned_cols=408 Identities=16% Similarity=0.110 Sum_probs=211.5
Q ss_pred ccCccc--chhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhh
Q psy5339 8 TASPTQ--LLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKY 85 (479)
Q Consensus 8 ~~~~~~--~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 85 (479)
+++|.. ..+++|++++|.+..+.. ..+..+++|++|++++| .+.... +..+.++++|++|+++++ .++......
T Consensus 24 ~~ip~~~~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~i~-~~~~~~l~~L~~L~Ls~n-~l~~~~p~~ 99 (606)
T 3vq2_A 24 SKVPDDIPSSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRC-EIETIE-DKAWHGLHHLSNLILTGN-PIQSFSPGS 99 (606)
T ss_dssp SSCCTTSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTC-CCCCCCTTS
T ss_pred ccCCCCCCCCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCC-cccccC-HHHhhchhhcCEeECCCC-cccccChhh
Confidence 345543 468999999997655433 35888999999999998 555422 344588999999999994 676543233
Q ss_pred hhhcCCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccc--hhHHHH
Q psy5339 86 VPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVS--DDAITV 163 (479)
Q Consensus 86 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~--~~~~~~ 163 (479)
...+++|++|+++++ .++...... ...+++|++|+++++. +....++.....+++|++|+++++.... ...+..
T Consensus 100 -~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 100 -FSGLTSLENLVAVET-KLASLESFP-IGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp -STTCTTCCEEECTTS-CCCCSSSSC-CTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred -cCCcccCCEEEccCC-ccccccccc-cCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence 355899999999985 443321111 3456899999999863 3322233345678999999999875321 222233
Q ss_pred HHHhc-----------------------CccceEEcCCcccCHHHHHHHHHcCCCCcEEecC------------------
Q psy5339 164 LARSC-----------------------TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLR------------------ 202 (479)
Q Consensus 164 ~~~~~-----------------------~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~------------------ 202 (479)
+...- .+|++|+++++.+...........++.++.+.+.
T Consensus 176 l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~ 255 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGG
T ss_pred hhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHh
Confidence 22111 1445555555544433333333334444433331
Q ss_pred --------------CCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEec
Q psy5339 203 --------------QCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDL 268 (479)
Q Consensus 203 --------------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 268 (479)
....+..... . +..+++|+.|+++++.+. .++..+..++|++|++
T Consensus 256 ~~l~~l~l~~l~l~~~~~~~~~~~-~-~~~l~~L~~L~l~~~~~~-------------------~l~~l~~~~~L~~L~l 314 (606)
T 3vq2_A 256 EGLCDVTIDEFRLTYTNDFSDDIV-K-FHCLANVSAMSLAGVSIK-------------------YLEDVPKHFKWQSLSI 314 (606)
T ss_dssp TTGGGSEEEEEEECCCTTCCGGGG-S-CGGGTTCSEEEEESCCCC-------------------CCCCCCTTCCCSEEEE
T ss_pred hhhhhccHhheecccccccccccc-c-cccCCCCCEEEecCccch-------------------hhhhccccccCCEEEc
Confidence 0001111111 1 233445555555554432 1222233334555555
Q ss_pred CCCCCCChhhHHHHHhcCCCccEEEeccC---------------------CccCcch-hccccccCCCCcEEeccCCCCC
Q psy5339 269 TDCSNVDDQGLSLIVSNCPQLIYLYLRRC---------------------VKLTDIG-IKYVPSFCSQLKELSVSDCTQV 326 (479)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---------------------~~l~~~~-~~~l~~~~~~L~~L~l~~~~~~ 326 (479)
++|.. ... +.+ .+++|+.|+++++ +.+.... .......+++|++|++++| .+
T Consensus 315 ~~n~l-~~l--p~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l 388 (606)
T 3vq2_A 315 IRCQL-KQF--PTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GA 388 (606)
T ss_dssp ESCCC-SSC--CCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SE
T ss_pred ccccC-ccc--ccC--CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-cc
Confidence 55322 111 111 3445555555443 2222211 0011112244555555443 22
Q ss_pred CcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHH
Q psy5339 327 TDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDA 406 (479)
Q Consensus 327 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 406 (479)
+... .....+++|++|+++++ .+...........+++|++|++++|..... .......+++|++|++++|.+++.
T Consensus 389 ~~~~--~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 389 IIMS--ANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKID--FDGIFLGLTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp EEEC--CCCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCCEEC--CTTTTTTCTTCCEEECTTCEEGGG
T ss_pred ccch--hhccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCCCCcc--chhhhcCCCCCCEEECCCCcCCCc
Confidence 2111 11122345555555552 222211111123456777777776542211 111123567777777777776543
Q ss_pred HHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccChH
Q psy5339 407 GLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVE 457 (479)
Q Consensus 407 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 457 (479)
.+......+++|++|++++| .++..... .+..+++|+.|++++|+++..
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKC-QLEQISWG-VFDTLHRLQLLNMSHNNLLFL 512 (606)
T ss_dssp EECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSCCSCE
T ss_pred chHHhhccCCCCCEEECCCC-cCCccChh-hhcccccCCEEECCCCcCCCc
Confidence 22222234778888888888 45543222 134668888888888887654
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=5.8e-23 Score=197.50 Aligned_cols=347 Identities=19% Similarity=0.170 Sum_probs=246.3
Q ss_pred ccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHh
Q psy5339 36 PTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKL 115 (479)
Q Consensus 36 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 115 (479)
..+.+++.|++.++ .+.. ++. +..+++|++|++++| .+++.. . ...+++|++|+++++ .++.... ...
T Consensus 43 ~~l~~l~~L~l~~~-~i~~--l~~-~~~l~~L~~L~Ls~n-~l~~~~--~-~~~l~~L~~L~l~~n-~l~~~~~---~~~ 110 (466)
T 1o6v_A 43 TDLDQVTTLQADRL-GIKS--IDG-VEYLNNLTQINFSNN-QLTDIT--P-LKNLTKLVDILMNNN-QIADITP---LAN 110 (466)
T ss_dssp HHHHTCCEEECCSS-CCCC--CTT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCCGG---GTT
T ss_pred hHhccccEEecCCC-CCcc--Ccc-hhhhcCCCEEECCCC-ccCCch--h-hhccccCCEEECCCC-ccccChh---hcC
Confidence 44688999999987 4443 222 578999999999995 676543 2 456899999999985 4554322 456
Q ss_pred CCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHcCCC
Q psy5339 116 GATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPN 195 (479)
Q Consensus 116 ~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 195 (479)
+++|++|+++++. +.... . ...+++|++|+++++....... ...+++|++|++++. +... .. ...+++
T Consensus 111 l~~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~~-~~~~--~~-~~~l~~ 178 (466)
T 1o6v_A 111 LTNLTGLTLFNNQ-ITDID--P-LKNLTNLNRLELSSNTISDISA----LSGLTSLQQLSFGNQ-VTDL--KP-LANLTT 178 (466)
T ss_dssp CTTCCEEECCSSC-CCCCG--G-GTTCTTCSEEEEEEEEECCCGG----GTTCTTCSEEEEEES-CCCC--GG-GTTCTT
T ss_pred CCCCCEEECCCCC-CCCCh--H-HcCCCCCCEEECCCCccCCChh----hccCCcccEeecCCc-ccCc--hh-hccCCC
Confidence 7999999999863 33322 1 4678999999999875433222 345689999999743 2221 11 345899
Q ss_pred CcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCC
Q psy5339 196 IKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVD 275 (479)
Q Consensus 196 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 275 (479)
|+.|+++++. +.... .+..+++|++|++++|.+.... .....++|++|+++++ .+.
T Consensus 179 L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~l~~~~-------------------~~~~l~~L~~L~l~~n-~l~ 234 (466)
T 1o6v_A 179 LERLDISSNK-VSDIS---VLAKLTNLESLIATNNQISDIT-------------------PLGILTNLDELSLNGN-QLK 234 (466)
T ss_dssp CCEEECCSSC-CCCCG---GGGGCTTCSEEECCSSCCCCCG-------------------GGGGCTTCCEEECCSS-CCC
T ss_pred CCEEECcCCc-CCCCh---hhccCCCCCEEEecCCcccccc-------------------cccccCCCCEEECCCC-Ccc
Confidence 9999999874 43321 2568899999999999865321 1233456999999996 344
Q ss_pred hhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChh
Q psy5339 276 DQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDA 355 (479)
Q Consensus 276 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 355 (479)
... ....+++|+.|++++ +.+..... + ..+++|+.|++++| .++.... ...+++|+.|+++++ .++..
T Consensus 235 ~~~---~l~~l~~L~~L~l~~-n~l~~~~~--~-~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~ 302 (466)
T 1o6v_A 235 DIG---TLASLTNLTDLDLAN-NQISNLAP--L-SGLTKLTELKLGAN-QISNISP---LAGLTALTNLELNEN-QLEDI 302 (466)
T ss_dssp CCG---GGGGCTTCSEEECCS-SCCCCCGG--G-TTCTTCSEEECCSS-CCCCCGG---GTTCTTCSEEECCSS-CCSCC
T ss_pred cch---hhhcCCCCCEEECCC-Cccccchh--h-hcCCCCCEEECCCC-ccCcccc---ccCCCccCeEEcCCC-cccCc
Confidence 321 235789999999999 45655432 2 34589999999996 5654322 445789999999984 45443
Q ss_pred HHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHH
Q psy5339 356 GLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQ 435 (479)
Q Consensus 356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 435 (479)
.. ...+++|+.|++++|....... ...+++|++|++++|.+++. ..+. .+++|+.|++++| .+++...
T Consensus 303 ~~---~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~--~~l~-~l~~L~~L~l~~n-~l~~~~~- 370 (466)
T 1o6v_A 303 SP---ISNLKNLTYLTLYFNNISDISP----VSSLTKLQRLFFYNNKVSDV--SSLA-NLTNINWLSAGHN-QISDLTP- 370 (466)
T ss_dssp GG---GGGCTTCSEEECCSSCCSCCGG----GGGCTTCCEEECCSSCCCCC--GGGT-TCTTCCEEECCSS-CCCBCGG-
T ss_pred hh---hcCCCCCCEEECcCCcCCCchh----hccCccCCEeECCCCccCCc--hhhc-cCCCCCEEeCCCC-ccCccch-
Confidence 22 3478999999999985432211 34789999999999998764 3333 5899999999999 4555433
Q ss_pred HHHHcCccccEEEecccccCh
Q psy5339 436 CIAYYCRGLQQLNIQDCQISV 456 (479)
Q Consensus 436 ~~~~~~~~L~~L~l~~~~i~~ 456 (479)
...+++|+.|++++|+++.
T Consensus 371 --~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 371 --LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --GTTCTTCCEEECCCEEEEC
T ss_pred --hhcCCCCCEEeccCCcccC
Confidence 4678999999999998765
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=8e-26 Score=225.16 Aligned_cols=358 Identities=12% Similarity=0.081 Sum_probs=197.7
Q ss_pred HHHhcCCcccEEecccccccchh----------------hHhhhhh--cCCCCcEEEeecCcccCcHHHHHHHHhCCCcc
Q psy5339 59 LIVSNCPQLIYLYLRRCVKLTDI----------------GIKYVPS--FCSQLKELSVSDCTQVTDFGLYELAKLGATLR 120 (479)
Q Consensus 59 ~~~~~~~~L~~L~l~~~~~l~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 120 (479)
..++++++|++|+++++ .++.. .++.... .+++|++|++++|..... ++.....+++|+
T Consensus 200 ~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~ 276 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK--LPTFLKALPEMQ 276 (636)
T ss_dssp GGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS--CCTTTTTCSSCC
T ss_pred HHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc--ChHHHhcCCCCC
Confidence 34566777888888773 56542 0222223 567788888877532221 112234457777
Q ss_pred EEecCCCCCCChHHHHHHHHh------CCccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHcCC
Q psy5339 121 YLSVAKCDQVSDAGLKVIARR------CYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCP 194 (479)
Q Consensus 121 ~L~l~~~~~~~~~~l~~l~~~------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 194 (479)
+|+++++..++...++.-... +++|++|+++++..... ........+++|++|++++|.+..... ....++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~ 353 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF-PVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEI 353 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC-CCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc-CchhhhccCCCCCEEeCcCCcCccchh--hhCCCC
Confidence 888777543554223332223 37777787777643311 001133455777788877776542111 223356
Q ss_pred CCcEEecCCCCCcChHHHHHHHhhCCC-CcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCC
Q psy5339 195 NIKKLSLRQCDLVTDRGVQCIAYYCRG-LQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSN 273 (479)
Q Consensus 195 ~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 273 (479)
+|+.|+++++ .+. .++..+..+++ |+.|++++|.+.. +.........++|++|+++++ .
T Consensus 354 ~L~~L~L~~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~----------------lp~~~~~~~l~~L~~L~Ls~N-~ 413 (636)
T 4eco_A 354 KLASLNLAYN-QIT--EIPANFCGFTEQVENLSFAHNKLKY----------------IPNIFDAKSVSVMSAIDFSYN-E 413 (636)
T ss_dssp EESEEECCSS-EEE--ECCTTSEEECTTCCEEECCSSCCSS----------------CCSCCCTTCSSCEEEEECCSS-C
T ss_pred CCCEEECCCC-ccc--cccHhhhhhcccCcEEEccCCcCcc----------------cchhhhhcccCccCEEECcCC-c
Confidence 7777777766 232 22233445666 8888888777441 111111122336888888874 3
Q ss_pred CChhhHHHHHh-------cCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcC-------C
Q psy5339 274 VDDQGLSLIVS-------NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLG-------A 339 (479)
Q Consensus 274 ~~~~~~~~~~~-------~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-------~ 339 (479)
+.......+ . .+++|+.|++++ +.+...+.. +...+++|+.|++++| .++.... ...... +
T Consensus 414 l~~~~p~~l-~~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~-~~~~l~~L~~L~Ls~N-~l~~i~~-~~~~~~~~~~~~l~ 488 (636)
T 4eco_A 414 IGSVDGKNF-DPLDPTPFKGINVSSINLSN-NQISKFPKE-LFSTGSPLSSINLMGN-MLTEIPK-NSLKDENENFKNTY 488 (636)
T ss_dssp TTTTTTCSS-CTTCSSCCCCCCEEEEECCS-SCCCSCCTH-HHHTTCCCSEEECCSS-CCSBCCS-SSSEETTEECTTGG
T ss_pred CCCcchhhh-cccccccccCCCCCEEECcC-CccCcCCHH-HHccCCCCCEEECCCC-CCCCcCH-HHhccccccccccC
Confidence 332211111 1 456888888888 566643222 2233578888888885 5542111 111111 2
Q ss_pred CccEEeccccCCCChhHHHHHH-HhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecC------CCCCHHHHHHHH
Q psy5339 340 TLRYLSVAKCDQVSDAGLKVIA-RRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGK------CDVSDAGLRALA 412 (479)
Q Consensus 340 ~L~~L~l~~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~------~~i~~~~~~~l~ 412 (479)
+|++|++++ +.++... ..+. ..+++|+.|++++|. ++. +......+++|++|++++ |.+.......+.
T Consensus 489 ~L~~L~Ls~-N~l~~lp-~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 489 LLTSIDLRF-NKLTKLS-DDFRATTLPYLVGIDLSYNS-FSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp GCCEEECCS-SCCCBCC-GGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred CccEEECcC-CcCCccC-hhhhhccCCCcCEEECCCCC-CCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 788888887 4455321 1111 267888888888865 332 222233588888998854 444433222333
Q ss_pred hhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccChHH
Q psy5339 413 ESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEG 458 (479)
Q Consensus 413 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 458 (479)
.+++|++|++++|. ++..... ..++|+.|++++|++....
T Consensus 564 -~l~~L~~L~Ls~N~-l~~ip~~----~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 564 -LCPSLTQLQIGSND-IRKVNEK----ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp -GCSSCCEEECCSSC-CCBCCSC----CCTTCCEEECCSCTTCEEE
T ss_pred -cCCCCCEEECCCCc-CCccCHh----HhCcCCEEECcCCCCcccc
Confidence 48889999999884 4442211 2378999999999866544
No 20
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.9e-22 Score=186.57 Aligned_cols=306 Identities=18% Similarity=0.211 Sum_probs=173.3
Q ss_pred hcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHh
Q psy5339 62 SNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARR 141 (479)
Q Consensus 62 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~ 141 (479)
..+++|++|+++++ .+.+. +. ...+++|++|+++++ .++.... ...+++|++|+++++ .+.+. . ....
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~--~~-~~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i~~~--~-~~~~ 108 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASI--QG-IEYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KITDI--S-ALQN 108 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCC--TT-GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCC--G-GGTT
T ss_pred hhcccccEEEEeCC-ccccc--hh-hhhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cccCc--h-HHcC
Confidence 34678888888884 55542 22 344788888888874 4443221 344566777776664 22221 1 1234
Q ss_pred CCccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCC
Q psy5339 142 CYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRG 221 (479)
Q Consensus 142 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 221 (479)
+++|++|+++ ++.+..... ...+++|+.|+++++........ +..+++
T Consensus 109 l~~L~~L~l~--------------------------~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~ 156 (347)
T 4fmz_A 109 LTNLRELYLN--------------------------EDNISDISP---LANLTKMYSLNLGANHNLSDLSP---LSNMTG 156 (347)
T ss_dssp CTTCSEEECT--------------------------TSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGG---GTTCTT
T ss_pred CCcCCEEECc--------------------------CCcccCchh---hccCCceeEEECCCCCCcccccc---hhhCCC
Confidence 4455555554 444332111 22345555555555432221111 334555
Q ss_pred CcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccC
Q psy5339 222 LQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLT 301 (479)
Q Consensus 222 L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 301 (479)
|+.|++++|.+..... ....++|++|+++++. +..... ...+++|+.|++++ +.+.
T Consensus 157 L~~L~l~~~~~~~~~~-------------------~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~-n~l~ 212 (347)
T 4fmz_A 157 LNYLTVTESKVKDVTP-------------------IANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYV-NQIT 212 (347)
T ss_dssp CCEEECCSSCCCCCGG-------------------GGGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEEECCS-SCCC
T ss_pred CcEEEecCCCcCCchh-------------------hccCCCCCEEEccCCc-cccccc---ccCCCccceeeccc-CCCC
Confidence 5555555555332111 1123345566665532 222111 34567777777777 3444
Q ss_pred cchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHH
Q psy5339 302 DIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDD 381 (479)
Q Consensus 302 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 381 (479)
+... ...+++|++|++++| .+++... ...+++|++|+++++ .++... ....+++|++|++++|. +++.
T Consensus 213 ~~~~---~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~l~~n~-l~~~ 280 (347)
T 4fmz_A 213 DITP---VANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTN-QISDIN---AVKDLTKLKMLNVGSNQ-ISDI 280 (347)
T ss_dssp CCGG---GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCCC
T ss_pred CCch---hhcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCC-ccCCCh---hHhcCCCcCEEEccCCc-cCCC
Confidence 4332 233467777777774 4444322 345567777777773 444321 13367889999998874 3332
Q ss_pred HHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccC
Q psy5339 382 AITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 382 ~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 455 (479)
. ....+++|++|++++|++++.....+.. +++|++|++++|+ ++.... ...+++|+.|++++|+++
T Consensus 281 --~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 281 --S-VLNNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp --G-GGGGCTTCSEEECCSSCCCGGGHHHHHT-CTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC---
T ss_pred --h-hhcCCCCCCEEECcCCcCCCcChhHhhc-cccCCEEEccCCc-cccccC---hhhhhccceeehhhhccc
Confidence 1 2346899999999999998877766664 9999999999994 555333 467899999999999886
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=3.7e-22 Score=184.59 Aligned_cols=305 Identities=20% Similarity=0.178 Sum_probs=168.7
Q ss_pred cccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHH
Q psy5339 35 SPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAK 114 (479)
Q Consensus 35 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 114 (479)
+..+++|++|+++++ .+... +. +..+++|++|++++| .+++.. . ...+++|++|+++++ .++... ...
T Consensus 40 ~~~l~~L~~L~l~~~-~i~~~--~~-~~~~~~L~~L~l~~n-~i~~~~--~-~~~l~~L~~L~L~~n-~i~~~~---~~~ 107 (347)
T 4fmz_A 40 QEELESITKLVVAGE-KVASI--QG-IEYLTNLEYLNLNGN-QITDIS--P-LSNLVKLTNLYIGTN-KITDIS---ALQ 107 (347)
T ss_dssp HHHHTTCSEEECCSS-CCCCC--TT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCCG---GGT
T ss_pred chhcccccEEEEeCC-ccccc--hh-hhhcCCccEEEccCC-ccccch--h-hhcCCcCCEEEccCC-cccCch---HHc
Confidence 456677777777776 34331 22 466777888888774 555432 2 345677888887774 444321 134
Q ss_pred hCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHcCC
Q psy5339 115 LGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCP 194 (479)
Q Consensus 115 ~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 194 (479)
.+++|++|+++++. +..... ...+++|+.|+++++........ ...+++|++|+++++.+..... ...++
T Consensus 108 ~l~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~---~~~l~ 177 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-ISDISP---LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKVKDVTP---IANLT 177 (347)
T ss_dssp TCTTCSEEECTTSC-CCCCGG---GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSCCCCCGG---GGGCT
T ss_pred CCCcCCEEECcCCc-ccCchh---hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCCcCCchh---hccCC
Confidence 56778888887653 222111 44678888888887754332211 3456788888888887654322 34578
Q ss_pred CCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCC
Q psy5339 195 NIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNV 274 (479)
Q Consensus 195 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 274 (479)
+|+.|+++++. +..... +..+++|+.|++++|.+..... ....++|++|+++++. +
T Consensus 178 ~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~~-------------------~~~~~~L~~L~l~~n~-l 233 (347)
T 4fmz_A 178 DLYSLSLNYNQ-IEDISP---LASLTSLHYFTAYVNQITDITP-------------------VANMTRLNSLKIGNNK-I 233 (347)
T ss_dssp TCSEEECTTSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGG-------------------GGGCTTCCEEECCSSC-C
T ss_pred CCCEEEccCCc-cccccc---ccCCCccceeecccCCCCCCch-------------------hhcCCcCCEEEccCCc-c
Confidence 89999998873 332211 4577888888888877432111 1122235555554431 2
Q ss_pred ChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCCh
Q psy5339 275 DDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSD 354 (479)
Q Consensus 275 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 354 (479)
..... ...+++|+.|++++ +.++.. .. ...+++|++|+++++ .+++
T Consensus 234 ~~~~~---~~~l~~L~~L~l~~-n~l~~~--~~---------------------------~~~l~~L~~L~l~~n-~l~~ 279 (347)
T 4fmz_A 234 TDLSP---LANLSQLTWLEIGT-NQISDI--NA---------------------------VKDLTKLKMLNVGSN-QISD 279 (347)
T ss_dssp CCCGG---GTTCTTCCEEECCS-SCCCCC--GG---------------------------GTTCTTCCEEECCSS-CCCC
T ss_pred CCCcc---hhcCCCCCEEECCC-CccCCC--hh---------------------------HhcCCCcCEEEccCC-ccCC
Confidence 21111 23444555555554 233322 11 222344555555442 2322
Q ss_pred hHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCc
Q psy5339 355 AGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCD 427 (479)
Q Consensus 355 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 427 (479)
.. ....+++|+.|++++|. ++......+ ..+++|++|++++|++++... ...+++|++|++++|+
T Consensus 280 ~~---~~~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 280 IS---VLNNLSQLNSLFLNNNQ-LGNEDMEVI-GGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp CG---GGGGCTTCSEEECCSSC-CCGGGHHHH-HTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC-
T ss_pred Ch---hhcCCCCCCEEECcCCc-CCCcChhHh-hccccCCEEEccCCccccccC---hhhhhccceeehhhhc
Confidence 21 12345677777777754 333222222 257777777777777664322 2347778888888773
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1.5e-24 Score=219.12 Aligned_cols=214 Identities=15% Similarity=0.148 Sum_probs=132.5
Q ss_pred cCccc--chhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhh
Q psy5339 9 ASPTQ--LLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYV 86 (479)
Q Consensus 9 ~~~~~--~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 86 (479)
++|.. ..+++|++++|.+..+. ...+..+++|++|++++| .+.... +..+.++++|++|+++++ .++..... .
T Consensus 18 ~ip~~~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~l~~~-~ 92 (680)
T 1ziw_A 18 QVPDDLPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFN-TISKLE-PELCQKLPMLKVLNLQHN-ELSQLSDK-T 92 (680)
T ss_dssp SCCSCSCTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSS-CCCCCC-TTHHHHCTTCCEEECCSS-CCCCCCTT-T
T ss_pred ccccccCCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCC-ccCccC-HHHHhcccCcCEEECCCC-ccCccChh-h
Confidence 45543 37999999999655443 334788999999999997 454322 345688999999999994 66643222 2
Q ss_pred hhcCCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHH-
Q psy5339 87 PSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLA- 165 (479)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~- 165 (479)
...+++|++|+++++ .++.... .....+++|++|+++++. +..... .....+++|++|+++++.... .....+.
T Consensus 93 ~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~ 167 (680)
T 1ziw_A 93 FAFCTNLTELHLMSN-SIQKIKN-NPFVKQKNLITLDLSHNG-LSSTKL-GTQVQLENLQELLLSNNKIQA-LKSEELDI 167 (680)
T ss_dssp TTTCTTCSEEECCSS-CCCCCCS-CTTTTCTTCCEEECCSSC-CSCCCC-CSSSCCTTCCEEECCSSCCCC-BCHHHHGG
T ss_pred hccCCCCCEEECCCC-ccCccCh-hHccccCCCCEEECCCCc-ccccCc-hhhcccccCCEEEccCCcccc-cCHHHhhc
Confidence 345799999999985 4443211 123456899999998853 222111 112467899999998864322 1222221
Q ss_pred HhcCccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHh--hCCCCcEEEccCcccch
Q psy5339 166 RSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAY--YCRGLQQLNIQDCQISV 234 (479)
Q Consensus 166 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~ 234 (479)
..+++|++|++++|.+....... ...+++|+.+++.++ .+.......+.. ..++|+.|++++|.+..
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLST 236 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEECTTC-CCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred cccccccEEECCCCcccccChhh-hhhhhhhhhhhcccc-ccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence 13478999999988765422222 233677777777765 333322222211 23677777777776543
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.6e-24 Score=219.50 Aligned_cols=359 Identities=14% Similarity=0.091 Sum_probs=205.1
Q ss_pred HHHHhcCCcccEEecccccccchh----------------hHhhhhh--cCCCCcEEEeecCcccCcHHHHHHHHhCCCc
Q psy5339 58 SLIVSNCPQLIYLYLRRCVKLTDI----------------GIKYVPS--FCSQLKELSVSDCTQVTDFGLYELAKLGATL 119 (479)
Q Consensus 58 ~~~~~~~~~L~~L~l~~~~~l~~~----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 119 (479)
+..+.++++|++|++++ +.++.. .++.... .+++|++|++++|..... ++.....+++|
T Consensus 441 P~~l~~L~~L~~L~Ls~-N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L 517 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFAN-SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPEL 517 (876)
T ss_dssp CGGGGGCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSSC
T ss_pred hHHHhcCCCCCEEECcC-CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCCC
Confidence 34466778888888888 466652 1233223 578888888887542222 22334456788
Q ss_pred cEEecCCCCCCChHHHHHHHH-------hCCccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHc
Q psy5339 120 RYLSVAKCDQVSDAGLKVIAR-------RCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAES 192 (479)
Q Consensus 120 ~~L~l~~~~~~~~~~l~~l~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 192 (479)
+.|+++++..++...++.-.. .+++|+.|+++++....... ......+++|+.|++++|.+.. +. ....
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~-~~~l~~L~~L~~L~Ls~N~l~~--lp-~~~~ 593 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA-SASLQKMVKLGLLDCVHNKVRH--LE-AFGT 593 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC-HHHHTTCTTCCEEECTTSCCCB--CC-CCCT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC-hhhhhcCCCCCEEECCCCCccc--ch-hhcC
Confidence 888888754355422332222 33588888888765331111 0133456788888888887762 22 2344
Q ss_pred CCCCcEEecCCCCCcChHHHHHHHhhCCC-CcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCC
Q psy5339 193 CPNIKKLSLRQCDLVTDRGVQCIAYYCRG-LQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDC 271 (479)
Q Consensus 193 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 271 (479)
+++|+.|+++++. +. .++..+..+++ |+.|++++|.+.. +.........++|+.|+++++
T Consensus 594 L~~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~L~~----------------lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 594 NVKLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNKLKY----------------IPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp TSEESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSCCCS----------------CCSCCCTTCSSCEEEEECCSS
T ss_pred CCcceEEECcCCc-cc--cchHHHhhccccCCEEECcCCCCCc----------------CchhhhccccCCCCEEECcCC
Confidence 6788888888763 43 23333456677 8888888887541 111111122234888888875
Q ss_pred CCCChhhH--H-HH-HhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHH-------cCCC
Q psy5339 272 SNVDDQGL--S-LI-VSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAK-------LGAT 340 (479)
Q Consensus 272 ~~~~~~~~--~-~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-------~~~~ 340 (479)
.+..... . .+ ...+++|+.|++++ +.+...+.. +...+++|+.|++++| .++.... .+.. .+++
T Consensus 655 -~l~g~ip~l~~~l~~~~~~~L~~L~Ls~-N~L~~lp~~-~~~~l~~L~~L~Ls~N-~L~~ip~-~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 655 -KIGSEGRNISCSMDDYKGINASTVTLSY-NEIQKFPTE-LFATGSPISTIILSNN-LMTSIPE-NSLKPKDGNYKNTYL 729 (876)
T ss_dssp -CTTTTSSSCSSCTTTCCCCCEEEEECCS-SCCCSCCHH-HHHTTCCCSEEECCSC-CCSCCCT-TSSSCTTSCCTTGGG
T ss_pred -cCCCccccchhhhccccCCCcCEEEccC-CcCCccCHH-HHccCCCCCEEECCCC-cCCccCh-HHhccccccccccCC
Confidence 3322100 0 00 01234788888888 466643222 2234578888888885 5542111 1111 1127
Q ss_pred ccEEeccccCCCChhHHHHHH--HhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecC------CCCCHHHHHHHH
Q psy5339 341 LRYLSVAKCDQVSDAGLKVIA--RRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGK------CDVSDAGLRALA 412 (479)
Q Consensus 341 L~~L~l~~~~~l~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~------~~i~~~~~~~l~ 412 (479)
|+.|+++++ .++.. .... ..+++|+.|++++|. ++. +......+++|+.|+|++ |.+.......+.
T Consensus 730 L~~L~Ls~N-~L~~l--p~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 730 LTTIDLRFN-KLTSL--SDDFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp CCEEECCSS-CCCCC--CGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred ccEEECCCC-CCccc--hHHhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 888888874 45422 1222 267888888888864 332 222233678888888876 444432222333
Q ss_pred hhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccChHHH
Q psy5339 413 ESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGY 459 (479)
Q Consensus 413 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 459 (479)
.+++|+.|++++|. ++..... ..++|+.|++++|++.....
T Consensus 804 -~L~~L~~L~Ls~N~-L~~Ip~~----l~~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 804 -TCPSLIQLQIGSND-IRKVDEK----LTPQLYILDIADNPNISIDV 844 (876)
T ss_dssp -GCSSCCEEECCSSC-CCBCCSC----CCSSSCEEECCSCTTCEEEC
T ss_pred -cCCCCCEEECCCCC-CCccCHh----hcCCCCEEECCCCCCCccCh
Confidence 48889999998884 4432211 23688999999998765443
No 24
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=3.8e-21 Score=176.96 Aligned_cols=206 Identities=20% Similarity=0.313 Sum_probs=150.3
Q ss_pred ccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCC
Q psy5339 260 QLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGA 339 (479)
Q Consensus 260 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 339 (479)
.++|++|+++++ .+.+..+......+++|++|++++| .+++.....+.. +++|++|++++|..+++.++......++
T Consensus 92 ~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 92 PFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred CCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 345777777764 3555556666677888888888884 566655555544 5788888888866777767777677777
Q ss_pred CccEEeccccCCCChhHHHHHHHhCC-CccEEeccCCC-CccHHHHHHHHHhCCCCcEEEecCCC-CCHHHHHHHHhhCC
Q psy5339 340 TLRYLSVAKCDQVSDAGLKVIARRCY-KLRYLNARGCE-AVSDDAITVLARSCTRLRALDIGKCD-VSDAGLRALAESCP 416 (479)
Q Consensus 340 ~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~ 416 (479)
+|++|++++|..+++.++......++ +|++|++++|. .+++..+......+++|++|++++|. +++..+..+.. ++
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-l~ 247 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LN 247 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-CT
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC-CC
Confidence 88888888865777777677667778 88888888876 57766777676678888888888888 77766666654 78
Q ss_pred CCcEEeccCCcccchhhHHHHHHcCccccEEEecccccChHHHHHHHHhhhhcce
Q psy5339 417 NIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCII 471 (479)
Q Consensus 417 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~~i 471 (479)
+|++|++++|..+++.++..+ ..+++|+.|++++| ++++++..+...++++.+
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l 300 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQI 300 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEE
T ss_pred CCCEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc-cCHHHHHHHHhhCcceEE
Confidence 888888888876666655333 45788888888888 888888888777777665
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=1.1e-25 Score=231.79 Aligned_cols=167 Identities=17% Similarity=0.071 Sum_probs=98.0
Q ss_pred ccCccc-chhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhh
Q psy5339 8 TASPTQ-LLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYV 86 (479)
Q Consensus 8 ~~~~~~-~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 86 (479)
+++|.. ..+++|||++|.+..+. ...+..+++|++|++++|...... .+..+.++++|++|+++++ .++..... .
T Consensus 17 ~~vP~lp~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~Ls~N-~l~~~~p~-~ 92 (844)
T 3j0a_A 17 TQVPQVLNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLTI-DKEAFRNLPNLRILDLGSS-KIYFLHPD-A 92 (844)
T ss_dssp SCCCSSCTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTCCCCEE-CTTTTSSCTTCCEEECTTC-CCCEECTT-S
T ss_pred CCCCCCCCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCCCCCcccc-CHHHhcCCCCCCEEECCCC-cCcccCHh-H
Confidence 445542 35789999888655442 345788888888888887333221 1334577888888888884 66543222 2
Q ss_pred hhcCCCCcEEEeecCcccCcHHHH-HHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccc--hhHHHH
Q psy5339 87 PSFCSQLKELSVSDCTQVTDFGLY-ELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVS--DDAITV 163 (479)
Q Consensus 87 ~~~~~~L~~L~l~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~--~~~~~~ 163 (479)
...+++|++|++++| .++..... .....+++|++|+++++. +...........+++|++|+++++.... ...+..
T Consensus 93 ~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 93 FQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp SCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred ccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 345788888888874 44421111 113346788888888753 3222222234567888888888764321 122332
Q ss_pred HHHhcCccceEEcCCcccC
Q psy5339 164 LARSCTRLRALDIGKCDVS 182 (479)
Q Consensus 164 ~~~~~~~L~~L~l~~~~~~ 182 (479)
+.. ++|+.|+++++.+.
T Consensus 171 l~~--~~L~~L~L~~n~l~ 187 (844)
T 3j0a_A 171 LQG--KTLSFFSLAANSLY 187 (844)
T ss_dssp HHH--CSSCCCEECCSBSC
T ss_pred ccC--CccceEECCCCccc
Confidence 221 56777777766543
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=1.5e-23 Score=211.89 Aligned_cols=88 Identities=22% Similarity=0.067 Sum_probs=53.6
Q ss_pred CcccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhh-h
Q psy5339 10 SPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVP-S 88 (479)
Q Consensus 10 ~~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~ 88 (479)
+.....|++|++++|.+..+. ...+..+++|++|++++| .+.... +..+.++++|++|+++++ .++......+. .
T Consensus 93 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~ 168 (680)
T 1ziw_A 93 FAFCTNLTELHLMSNSIQKIK-NNPFVKQKNLITLDLSHN-GLSSTK-LGTQVQLENLQELLLSNN-KIQALKSEELDIF 168 (680)
T ss_dssp TTTCTTCSEEECCSSCCCCCC-SCTTTTCTTCCEEECCSS-CCSCCC-CCSSSCCTTCCEEECCSS-CCCCBCHHHHGGG
T ss_pred hccCCCCCEEECCCCccCccC-hhHccccCCCCEEECCCC-cccccC-chhhcccccCCEEEccCC-cccccCHHHhhcc
Confidence 344567888888888654332 234677888888888887 343221 222356778888888874 55543322221 2
Q ss_pred cCCCCcEEEeecC
Q psy5339 89 FCSQLKELSVSDC 101 (479)
Q Consensus 89 ~~~~L~~L~l~~~ 101 (479)
.+++|++|+++++
T Consensus 169 ~~~~L~~L~L~~n 181 (680)
T 1ziw_A 169 ANSSLKKLELSSN 181 (680)
T ss_dssp TTCEESEEECTTC
T ss_pred ccccccEEECCCC
Confidence 3467777777764
No 27
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.8e-20 Score=174.43 Aligned_cols=273 Identities=14% Similarity=0.172 Sum_probs=136.3
Q ss_pred HhcCccceEEcCCcccCHHHHHHHHH---cCCCCcEEecCCCC--CcCh---HH---HHHHHhhCCCCcEEEccCcccch
Q psy5339 166 RSCTRLRALDIGKCDVSDAGLRALAE---SCPNIKKLSLRQCD--LVTD---RG---VQCIAYYCRGLQQLNIQDCQISV 234 (479)
Q Consensus 166 ~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~--~~~~---~~---~~~~~~~~~~L~~L~l~~~~~~~ 234 (479)
..+++|++|++++|.+++.....+.. .+++|+.|+++++. .+.. .+ +...+..+++|++|++++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 34567777777777777766555442 45777777777652 1211 12 22223466777777777777665
Q ss_pred hhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCC
Q psy5339 235 EGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQ 314 (479)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 314 (479)
.+...+..... ..++|++|++++| .+.......+...+..+... .+....++
T Consensus 109 ~~~~~l~~~l~-------------~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~--------------~~~~~~~~ 160 (386)
T 2ca6_A 109 TAQEPLIDFLS-------------KHTPLEHLYLHNN-GLGPQAGAKIARALQELAVN--------------KKAKNAPP 160 (386)
T ss_dssp TTHHHHHHHHH-------------HCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHH--------------HHHHTCCC
T ss_pred HHHHHHHHHHH-------------hCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhh--------------hhcccCCC
Confidence 54443332211 1122555555543 23222222111111000000 00000045
Q ss_pred CcEEeccCCCCCCcHHHHH---HHHcCCCccEEeccccCCCChhHHHHHHH----hCCCccEEeccCCCCccHHHHHH--
Q psy5339 315 LKELSVSDCTQVTDFGLYE---LAKLGATLRYLSVAKCDQVSDAGLKVIAR----RCYKLRYLNARGCEAVSDDAITV-- 385 (479)
Q Consensus 315 L~~L~l~~~~~~~~~~~~~---l~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~-- 385 (479)
|++|++++| .+++.++.. ....+++|++|++++ +.+++.++..+.. .+++|+.|++++|. +++.+...
T Consensus 161 L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~ 237 (386)
T 2ca6_A 161 LRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQ-NGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALA 237 (386)
T ss_dssp CCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCS-SCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHH
T ss_pred CcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcC-CCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHH
Confidence 555555553 444333332 222344566666655 3455544333322 45666666666653 44433222
Q ss_pred -HHHhCCCCcEEEecCCCCCHHHHHHHHhh-----CCCCcEEeccCCcccchhhHH----HHHHcCccccEEEecccccC
Q psy5339 386 -LARSCTRLRALDIGKCDVSDAGLRALAES-----CPNIKKLSLRQCDLVTDRGVQ----CIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 386 -l~~~~~~L~~L~l~~~~i~~~~~~~l~~~-----~~~L~~L~l~~~~~l~~~~~~----~~~~~~~~L~~L~l~~~~i~ 455 (479)
....+++|++|+|++|.+++.+...+... +++|++|++++| .++..++. .+...+++|+.|++++|+++
T Consensus 238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 23446667777777777666655544432 566777777776 45553222 22234567777777777766
Q ss_pred hHH--HHHHHHhhhhcc
Q psy5339 456 VEG--YRAVKKYCKRCI 470 (479)
Q Consensus 456 ~~~--~~~l~~~~~~~~ 470 (479)
..+ +..+...+++.+
T Consensus 317 ~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 317 EEDDVVDEIREVFSTRG 333 (386)
T ss_dssp TTSHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHhhhcC
Confidence 555 466665555544
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=3.6e-25 Score=227.96 Aligned_cols=407 Identities=16% Similarity=0.104 Sum_probs=209.7
Q ss_pred cCcccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhh-hh
Q psy5339 9 ASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKY-VP 87 (479)
Q Consensus 9 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~ 87 (479)
.+..+..|++||+++|..........+..+++|++|++++| .+... .+..+..+++|++|++++| .+++..... ..
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 119 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFL-HPDAFQGLFHLFELRLYFC-GLSDAVLKDGYF 119 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEE-CTTSSCSCSSCCCEECTTC-CCSSCCSTTCCC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCccc-CHhHccCCcccCEeeCcCC-CCCcccccCccc
Confidence 46677789999999885433333455788899999999987 45432 2344678899999999995 666432221 23
Q ss_pred hcCCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCC--CChHHHHHHHHhCCccceeeccCccccchhHHHHHH
Q psy5339 88 SFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQ--VSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLA 165 (479)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 165 (479)
..+++|++|+++++ .++..........+++|++|+++++.. .....+..+.. ++|+.|+++++........ .+
T Consensus 120 ~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~--~~L~~L~L~~n~l~~~~~~-~~- 194 (844)
T 3j0a_A 120 RNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG--KTLSFFSLAANSLYSRVSV-DW- 194 (844)
T ss_dssp SSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH--CSSCCCEECCSBSCCCCCC-CC-
T ss_pred cccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC--CccceEECCCCcccccccc-ch-
Confidence 55789999999984 454432223345678999999987521 12233333321 6777777776543221100 00
Q ss_pred Hhc------CccceEEcCCcccCHHHHHHHHHc-------------------------------------CCCCcEEecC
Q psy5339 166 RSC------TRLRALDIGKCDVSDAGLRALAES-------------------------------------CPNIKKLSLR 202 (479)
Q Consensus 166 ~~~------~~L~~L~l~~~~~~~~~~~~l~~~-------------------------------------~~~L~~L~l~ 202 (479)
..+ .+|+.|++++|.++......+... .++|+.|+++
T Consensus 195 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls 274 (844)
T 3j0a_A 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274 (844)
T ss_dssp CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECT
T ss_pred hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECC
Confidence 001 137777777775433222111111 1456666666
Q ss_pred CCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHH
Q psy5339 203 QCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLI 282 (479)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 282 (479)
++. +... ....+..+++|+.|++++|.+....... ....++|++|+++++ .+...... .
T Consensus 275 ~n~-l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~-----------------~~~l~~L~~L~Ls~N-~l~~~~~~-~ 333 (844)
T 3j0a_A 275 HGF-VFSL-NSRVFETLKDLKVLNLAYNKINKIADEA-----------------FYGLDNLQVLNLSYN-LLGELYSS-N 333 (844)
T ss_dssp TCC-CCEE-CSCCSSSCCCCCEEEEESCCCCEECTTT-----------------TTTCSSCCEEEEESC-CCSCCCSC-S
T ss_pred CCc-cccc-ChhhhhcCCCCCEEECCCCcCCCCChHH-----------------hcCCCCCCEEECCCC-CCCccCHH-H
Confidence 542 2211 1122334566666666666543221111 122334666666653 22211111 1
Q ss_pred HhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEecccc-------------
Q psy5339 283 VSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKC------------- 349 (479)
Q Consensus 283 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~------------- 349 (479)
+..+++|+.|++++ +.+.......+ ..+++|+.|++++| .++... ..++|+.|+++++
T Consensus 334 ~~~l~~L~~L~L~~-N~i~~~~~~~~-~~l~~L~~L~Ls~N-~l~~i~------~~~~L~~L~l~~N~l~~l~~~~~~l~ 404 (844)
T 3j0a_A 334 FYGLPKVAYIDLQK-NHIAIIQDQTF-KFLEKLQTLDLRDN-ALTTIH------FIPSIPDIFLSGNKLVTLPKINLTAN 404 (844)
T ss_dssp CSSCTTCCEEECCS-CCCCCCCSSCS-CSCCCCCEEEEETC-CSCCCS------SCCSCSEEEEESCCCCCCCCCCTTCC
T ss_pred hcCCCCCCEEECCC-CCCCccChhhh-cCCCCCCEEECCCC-CCCccc------CCCCcchhccCCCCcccccccccccc
Confidence 23455666666665 34444333222 22356666666553 333211 1334444444431
Q ss_pred ------CCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHH----HHHHhhCCCCc
Q psy5339 350 ------DQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGL----RALAESCPNIK 419 (479)
Q Consensus 350 ------~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~----~~l~~~~~~L~ 419 (479)
+.++..........+++|+.|++++|.. +..........+++|+.|++++|.++.... ......+++|+
T Consensus 405 ~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~ 483 (844)
T 3j0a_A 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRF-SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483 (844)
T ss_dssp EEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC-CCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE
T ss_pred eeecccCccccCchhhhhhcCCccceeeCCCCcc-cccccccccccCCccccccCCCCccccccccccchhhhcCccccc
Confidence 2333322222233566677777666532 210000011125667777777766541100 01112357777
Q ss_pred EEeccCCcccchhhHHHHHHcCccccEEEecccccCh
Q psy5339 420 KLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISV 456 (479)
Q Consensus 420 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~ 456 (479)
.|++++| .++..... .+..+++|+.|++++|+++.
T Consensus 484 ~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 484 VLYLNHN-YLNSLPPG-VFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp CCCCCHH-HHTTCCTT-SSSSCCSCSEEEEESCCCSS
T ss_pred EEECCCC-cccccChh-HccchhhhheeECCCCCCCc
Confidence 7888877 44432221 12467889999999998764
No 29
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.87 E-value=1.3e-23 Score=212.70 Aligned_cols=354 Identities=13% Similarity=0.116 Sum_probs=230.2
Q ss_pred ccccccccceeccCCCCCCchh----------------hHHHHHh--cCCcccEEecccccccchhhHhhhhhcCCCCcE
Q psy5339 34 ASPTQLLLQFLDLTDCSNVDDQ----------------GLSLIVS--NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKE 95 (479)
Q Consensus 34 ~~~~l~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 95 (479)
.++.+++|++|++++| .+... .++..+. ++++|++|++++| .+... ++.....+++|++
T Consensus 443 ~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-~l~~~-iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-PNMTQ-LPDFLYDLPELQS 519 (876)
T ss_dssp GGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-TTCCS-CCGGGGGCSSCCE
T ss_pred HHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-CCCcc-ChHHHhCCCCCCE
Confidence 4778899999999998 56542 2444444 8999999999996 44332 2334456899999
Q ss_pred EEeecCcccCcHHHHH----HH---HhCCCccEEecCCCCCCChHHHHH--HHHhCCccceeeccCccccchhHHHHHHH
Q psy5339 96 LSVSDCTQVTDFGLYE----LA---KLGATLRYLSVAKCDQVSDAGLKV--IARRCYKLRYLNARGCEAVSDDAITVLAR 166 (479)
Q Consensus 96 L~l~~~~~~~~~~~~~----l~---~~~~~L~~L~l~~~~~~~~~~l~~--l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 166 (479)
|+++++..++...++. +. ..+++|+.|+++++ .+. .++. ....+++|+.|+++++.... +. .+.
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~---lp-~~~ 592 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHNKVRH---LE-AFG 592 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTSCCCB---CC-CCC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCCCccc---ch-hhc
Confidence 9999854366412222 22 23569999999985 343 2333 46688999999999875431 11 334
Q ss_pred hcCccceEEcCCcccCHHHHHHHHHcCCC-CcEEecCCCCCcChHHHHHHHhhC--CCCcEEEccCcccchhhhHHHHhh
Q psy5339 167 SCTRLRALDIGKCDVSDAGLRALAESCPN-IKKLSLRQCDLVTDRGVQCIAYYC--RGLQQLNIQDCQISVEGYRAVKKY 243 (479)
Q Consensus 167 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~ 243 (479)
.+++|+.|++++|.+.. +......+++ |+.|+++++. +. .++..+... ++|+.|++++|.+.....
T Consensus 593 ~L~~L~~L~Ls~N~l~~--lp~~l~~l~~~L~~L~Ls~N~-L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip------ 661 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEE--IPEDFCAFTDQVEGLGFSHNK-LK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGR------ 661 (876)
T ss_dssp TTSEESEEECCSSCCSC--CCTTSCEECTTCCEEECCSSC-CC--SCCSCCCTTCSSCEEEEECCSSCTTTTSS------
T ss_pred CCCcceEEECcCCcccc--chHHHhhccccCCEEECcCCC-CC--cCchhhhccccCCCCEEECcCCcCCCccc------
Confidence 56899999999998772 2222344677 9999999874 44 223333333 349999999998653210
Q ss_pred hccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccc------cCCCCcE
Q psy5339 244 CKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPS------FCSQLKE 317 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~------~~~~L~~ 317 (479)
.+..-......++|+.|+++++ .+... ...+...+++|+.|++++ +.+...+...+.. .+++|+.
T Consensus 662 ------~l~~~l~~~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~~~~~~~l~nl~~L~~ 732 (876)
T 4ecn_A 662 ------NISCSMDDYKGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSN-NLMTSIPENSLKPKDGNYKNTYLLTT 732 (876)
T ss_dssp ------SCSSCTTTCCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCS-CCCSCCCTTSSSCTTSCCTTGGGCCE
T ss_pred ------cchhhhccccCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCC-CcCCccChHHhccccccccccCCccE
Confidence 0000001112347999999995 44432 333445789999999999 5776443332221 1238999
Q ss_pred EeccCCCCCCcHHHHHHH--HcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCC-----CccHHHHHHHHHhC
Q psy5339 318 LSVSDCTQVTDFGLYELA--KLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCE-----AVSDDAITVLARSC 390 (479)
Q Consensus 318 L~l~~~~~~~~~~~~~l~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~l~~~~ 390 (479)
|++++| .++. +.... ..+++|+.|++++ +.++. +..-...+++|+.|++++|. .+.. .+......+
T Consensus 733 L~Ls~N-~L~~--lp~~l~~~~l~~L~~L~Ls~-N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~-~ip~~l~~L 805 (876)
T 4ecn_A 733 IDLRFN-KLTS--LSDDFRATTLPYLSNMDVSY-NCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILR-QWPTGITTC 805 (876)
T ss_dssp EECCSS-CCCC--CCGGGSTTTCTTCCEEECCS-SCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCC-CCCTTGGGC
T ss_pred EECCCC-CCcc--chHHhhhccCCCcCEEEeCC-CCCCc--cchhhhcCCCCCEEECCCCCCcccccccc-cChHHHhcC
Confidence 999996 6663 22222 2678999999998 45554 22223378999999998743 1111 112222468
Q ss_pred CCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcc
Q psy5339 391 TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDL 428 (479)
Q Consensus 391 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 428 (479)
++|+.|+|++|.++.. ..- .+++|+.|++++|+.
T Consensus 806 ~~L~~L~Ls~N~L~~I--p~~--l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 806 PSLIQLQIGSNDIRKV--DEK--LTPQLYILDIADNPN 839 (876)
T ss_dssp SSCCEEECCSSCCCBC--CSC--CCSSSCEEECCSCTT
T ss_pred CCCCEEECCCCCCCcc--CHh--hcCCCCEEECCCCCC
Confidence 9999999999997421 111 247899999999954
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=2e-23 Score=200.64 Aligned_cols=133 Identities=15% Similarity=0.106 Sum_probs=69.5
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.|++||+++|.+..+. ...+..+++|++|++++| .+.....+..+..+++|++|+++++ .++......+ ..+++|+
T Consensus 31 ~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~ 106 (455)
T 3v47_A 31 HVNYVDLSLNSIAELN-ETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAF-NGLANLE 106 (455)
T ss_dssp TCCEEECCSSCCCEEC-TTTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTT-TTCTTCC
T ss_pred ccCEEEecCCccCcCC-hhHhccCccccEEECcCC-cccceECcccccccccCCEEeCCCC-ccCccChhhc-cCcccCC
Confidence 5777777777544332 234666777777777776 3321111233466777777777773 5544322222 3467777
Q ss_pred EEEeecCcccCcHHHHH-HHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCc
Q psy5339 95 ELSVSDCTQVTDFGLYE-LAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGC 153 (479)
Q Consensus 95 ~L~l~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 153 (479)
+|++++| .++...... ....+++|++|+++++. +.......+...+++|++|+++++
T Consensus 107 ~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 107 VLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp EEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTC
T ss_pred EEeCCCC-CCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCC
Confidence 7777764 444321111 13345666666666542 221111112334556666666554
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=5.7e-23 Score=197.46 Aligned_cols=386 Identities=14% Similarity=0.078 Sum_probs=186.1
Q ss_pred cccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEE
Q psy5339 17 QFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKEL 96 (479)
Q Consensus 17 ~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 96 (479)
+..+.+++.+..++. + .++|++|+++++ .+.... +..+.++++|++|+++++ .+...........+++|++|
T Consensus 13 ~~~~c~~~~l~~lp~---l--~~~l~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L 84 (455)
T 3v47_A 13 YNAICINRGLHQVPE---L--PAHVNYVDLSLN-SIAELN-ETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIIL 84 (455)
T ss_dssp TEEECCSSCCSSCCC---C--CTTCCEEECCSS-CCCEEC-TTTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEE
T ss_pred cccCcCCCCcccCCC---C--CCccCEEEecCC-ccCcCC-hhHhccCccccEEECcCC-cccceECcccccccccCCEE
Confidence 345555554433332 2 278999999997 555422 344578999999999995 44322112233457899999
Q ss_pred EeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHH-HHHHhCCccceeeccCccccchhHHHHHHHhcCccceEE
Q psy5339 97 SVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLK-VIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALD 175 (479)
Q Consensus 97 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 175 (479)
+++++ .++... ......+++|++|+++++ .+...... .....+++|++|+++++... ......+...+++|++|+
T Consensus 85 ~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 85 KLDYN-QFLQLE-TGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp ECTTC-TTCEEC-TTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCC-SCCCCGGGGGCTTCCEEE
T ss_pred eCCCC-ccCccC-hhhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccC-ccCcccccCCCCcccEEe
Confidence 99984 444321 112234567777777764 33322111 11334566666666665321 111111223345666666
Q ss_pred cCCcccCHHHHHHHHH-cCCCCcEEecCCCCCcChHH-------HHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccc
Q psy5339 176 IGKCDVSDAGLRALAE-SCPNIKKLSLRQCDLVTDRG-------VQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRC 247 (479)
Q Consensus 176 l~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 247 (479)
+++|.+.......+.. ..++|+.++++++. +.... .......+++|++|++++|.+.......+.....
T Consensus 161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~-- 237 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA-- 237 (455)
T ss_dssp CTTCCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT--
T ss_pred CCCCcccccChhhhhccccccccccccccCc-ccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc--
Confidence 6666543221111111 01345555555442 11100 0000112244555555555444433333322110
Q ss_pred cccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccc-cCCCCcEEeccCCCCC
Q psy5339 248 CIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPS-FCSQLKELSVSDCTQV 326 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~ 326 (479)
.++|+.|+++++...... +. . ..+.+.....+.. ..++|+.|++++| .+
T Consensus 238 ------------~~~L~~L~l~~~~~~~~~-~~---------------~-~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l 287 (455)
T 3v47_A 238 ------------GTKIQSLILSNSYNMGSS-FG---------------H-TNFKDPDNFTFKGLEASGVKTCDLSKS-KI 287 (455)
T ss_dssp ------------TCCEEEEECTTCTTTSCC-TT---------------C-CSSCCCCTTTTGGGTTSCCCEEECCSS-CC
T ss_pred ------------ccceeeEeeccccccccc-cc---------------h-hhhccCcccccccccccCceEEEecCc-cc
Confidence 112444444443111100 00 0 0000000000000 1246666666663 44
Q ss_pred CcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHH
Q psy5339 327 TDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDA 406 (479)
Q Consensus 327 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~ 406 (479)
+... ......+++|++|++++ +.++......+ ..+++|++|++++|. ++... ......+++|++|++++|.+++.
T Consensus 288 ~~~~-~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~ 362 (455)
T 3v47_A 288 FALL-KSVFSHFTDLEQLTLAQ-NEINKIDDNAF-WGLTHLLKLNLSQNF-LGSID-SRMFENLDKLEVLDLSYNHIRAL 362 (455)
T ss_dssp CEEC-TTTTTTCTTCCEEECTT-SCCCEECTTTT-TTCTTCCEEECCSSC-CCEEC-GGGGTTCTTCCEEECCSSCCCEE
T ss_pred cccc-hhhcccCCCCCEEECCC-CcccccChhHh-cCcccCCEEECCCCc-cCCcC-hhHhcCcccCCEEECCCCccccc
Confidence 4321 11123345666776666 33433221111 245777777777764 32211 11223577888888888877654
Q ss_pred HHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccC
Q psy5339 407 GLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 407 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 455 (479)
....+. .+++|++|++++| .++..... .+..+++|+.|++++|+++
T Consensus 363 ~~~~~~-~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 363 GDQSFL-GLPNLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CTTTTT-TCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred Chhhcc-ccccccEEECCCC-ccccCCHh-HhccCCcccEEEccCCCcc
Confidence 333333 3788888888888 45543222 2346678888888888755
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=8.6e-23 Score=194.60 Aligned_cols=184 Identities=18% Similarity=0.171 Sum_probs=97.3
Q ss_pred cchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCC
Q psy5339 13 QLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQ 92 (479)
Q Consensus 13 ~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 92 (479)
...|++|++++|.+..+ +.+..+++|++|++++| .+.... ++.+++|++|+++++ .++... ...+++
T Consensus 41 l~~L~~L~Ls~n~l~~~---~~l~~l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N-~l~~~~----~~~l~~ 107 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSN-KLTNLD----VTPLTK 107 (457)
T ss_dssp HTTCCEEECCSSCCCCC---TTGGGCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSS-CCSCCC----CTTCTT
T ss_pred cCCCCEEEccCCCcccC---hhhcccCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCC-CCceee----cCCCCc
Confidence 44567777777644433 24566677777777776 444321 456677777777773 555431 234567
Q ss_pred CcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccc
Q psy5339 93 LKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLR 172 (479)
Q Consensus 93 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 172 (479)
|++|+++++ .++... ...+++|++|+++++ .++... ...+++|++|+++++....... ...+++|+
T Consensus 108 L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N-~l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~ 173 (457)
T 3bz5_A 108 LTYLNCDTN-KLTKLD----VSQNPLLTYLNCARN-TLTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQLT 173 (457)
T ss_dssp CCEEECCSS-CCSCCC----CTTCTTCCEEECTTS-CCSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTTCC
T ss_pred CCEEECCCC-cCCeec----CCCCCcCCEEECCCC-ccceec----cccCCcCCEEECCCCCcccccc----cccCCcCC
Confidence 777777763 444321 234566677766654 222211 2345666666666553322211 12345666
Q ss_pred eEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCccc
Q psy5339 173 ALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQI 232 (479)
Q Consensus 173 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 232 (479)
+|++++|.++... ...+++|+.|+++++ .++... +..+++|+.|++++|.+
T Consensus 174 ~L~ls~n~l~~l~----l~~l~~L~~L~l~~N-~l~~~~----l~~l~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 174 TLDCSFNKITELD----VSQNKLLNRLNCDTN-NITKLD----LNQNIQLTFLDCSSNKL 224 (457)
T ss_dssp EEECCSSCCCCCC----CTTCTTCCEEECCSS-CCSCCC----CTTCTTCSEEECCSSCC
T ss_pred EEECCCCccceec----cccCCCCCEEECcCC-cCCeec----cccCCCCCEEECcCCcc
Confidence 6666666554421 233556666666655 232221 33456666666666653
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=9.3e-23 Score=199.35 Aligned_cols=398 Identities=12% Similarity=0.088 Sum_probs=239.9
Q ss_pred CcccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhc
Q psy5339 10 SPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSF 89 (479)
Q Consensus 10 ~~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 89 (479)
+.....|++|++++|.+.... ...+..+++|++|++++| .+.. ++.. .+++|++|+++++ .++...++.....
T Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~--lp~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~ 113 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQYLD-ISVFKFNQELEYLDLSHN-KLVK--ISCH--PTVNLKHLDLSFN-AFDALPICKEFGN 113 (520)
T ss_dssp HTTCTTCCEEECCSSCCCEEE-GGGGTTCTTCCEEECCSS-CCCE--EECC--CCCCCSEEECCSS-CCSSCCCCGGGGG
T ss_pred ccccccccEEecCCCccCCcC-hHHhhcccCCCEEecCCC-ceee--cCcc--ccCCccEEeccCC-ccccccchhhhcc
Confidence 445667999999999755442 235788999999999998 5553 2222 7899999999994 7765444344456
Q ss_pred CCCCcEEEeecCcccCcHHHHHHHHhCCCc--cEEecCCCCCC-Ch---HHHHH----------------------HHHh
Q psy5339 90 CSQLKELSVSDCTQVTDFGLYELAKLGATL--RYLSVAKCDQV-SD---AGLKV----------------------IARR 141 (479)
Q Consensus 90 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L--~~L~l~~~~~~-~~---~~l~~----------------------l~~~ 141 (479)
+++|++|++++ +.++...+ ..+++| +.|+++++... .. ..+.. ....
T Consensus 114 l~~L~~L~L~~-n~l~~~~~----~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~ 188 (520)
T 2z7x_B 114 MSQLKFLGLST-THLEKSSV----LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188 (520)
T ss_dssp CTTCCEEEEEE-SSCCGGGG----GGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTT
T ss_pred CCcceEEEecC-cccchhhc----cccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhc
Confidence 89999999998 45665332 334667 99988775320 10 11111 0123
Q ss_pred CCccceeeccCccc---c--chhHHHHHHHhcCccceEEcCCcccCHHHHHHHHH--cCCCCcEEecCCCCCcChHHHHH
Q psy5339 142 CYKLRYLNARGCEA---V--SDDAITVLARSCTRLRALDIGKCDVSDAGLRALAE--SCPNIKKLSLRQCDLVTDRGVQC 214 (479)
Q Consensus 142 ~~~L~~L~l~~~~~---~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~ 214 (479)
+++|+.++++++.. . ....+. ....+++|+.|+++++.++...+..+.. ..++|+.|+++++. +... ++.
T Consensus 189 l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~p~ 265 (520)
T 2z7x_B 189 VANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK-LQGQ-LDF 265 (520)
T ss_dssp CSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE-EESC-CCC
T ss_pred ccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc-ccCc-ccc
Confidence 56777777776430 0 011112 2234578888888888877665554432 24688888887652 2210 111
Q ss_pred HH-----hhCCCCcEEEccCcccchhhhHHHHhhh---------ccccccccccccCCcccceeEEecCCCCCCChhhHH
Q psy5339 215 IA-----YYCRGLQQLNIQDCQISVEGYRAVKKYC---------KRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLS 280 (479)
Q Consensus 215 ~~-----~~~~~L~~L~l~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 280 (479)
.+ ..+++|+.++++++.+. .....+.... ...+ .+.........++|++|+++++ .+......
T Consensus 266 ~~~~~~~~~l~~L~~l~l~~n~~~-~p~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 342 (520)
T 2z7x_B 266 RDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGT-RMVHMLCPSKISPFLHLDFSNN-LLTDTVFE 342 (520)
T ss_dssp CCCCCCSCCCCEEEEEEEEECCCC-SCTHHHHHHHHTCCCSEEEEESS-CCCCCCCCSSCCCCCEEECCSS-CCCTTTTT
T ss_pred chhhcccccCceeEecccccccee-cchhhhhcccccCceeEEEcCCC-ccccccchhhCCcccEEEeECC-ccChhhhh
Confidence 11 34555666666665541 1101111110 0000 1122222246678999999995 45442222
Q ss_pred HHHhcCCCccEEEeccCCccCcch-hccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHH
Q psy5339 281 LIVSNCPQLIYLYLRRCVKLTDIG-IKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKV 359 (479)
Q Consensus 281 ~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 359 (479)
. +..+++|+.|++++ +.+...+ +......+++|++|++++| .++...........++|++|++++ +.++......
T Consensus 343 ~-~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~ 418 (520)
T 2z7x_B 343 N-CGHLTELETLILQM-NQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSS-NILTDTIFRC 418 (520)
T ss_dssp T-CCCCSSCCEEECCS-SCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCS-SCCCGGGGGS
T ss_pred h-hccCCCCCEEEccC-CccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccCccCCEEECcC-CCCCcchhhh
Confidence 2 35789999999999 5676532 2222234589999999995 555421112233457999999998 4565432221
Q ss_pred HHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHH
Q psy5339 360 IARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQC 436 (479)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 436 (479)
+ .++|+.|++++|. ++ .+......+++|++|++++|+++..... ....+++|++|++++|+...+.....
T Consensus 419 l---~~~L~~L~Ls~N~-l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~ 488 (520)
T 2z7x_B 419 L---PPRIKVLDLHSNK-IK--SIPKQVVKLEALQELNVASNQLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCPRID 488 (520)
T ss_dssp C---CTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred h---cccCCEEECCCCc-cc--ccchhhhcCCCCCEEECCCCcCCccCHH-HhccCCcccEEECcCCCCcccCCchH
Confidence 1 1699999999975 44 2332223789999999999998742222 23358999999999996544444333
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=7.2e-23 Score=201.76 Aligned_cols=405 Identities=14% Similarity=0.124 Sum_probs=213.6
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.+++|++++|.+..+. ...+..+++|++|++++| .+.... +..+..+++|++|++++ +.++. ++.. .+++|+
T Consensus 53 ~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~-N~l~~--lp~~--~l~~L~ 124 (562)
T 3a79_B 53 RTKALSLSQNSISELR-MPDISFLSELRVLRLSHN-RIRSLD-FHVFLFNQDLEYLDVSH-NRLQN--ISCC--PMASLR 124 (562)
T ss_dssp TCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSC-CCCEEC-TTTTTTCTTCCEEECTT-SCCCE--ECSC--CCTTCS
T ss_pred CcCEEECCCCCccccC-hhhhccCCCccEEECCCC-CCCcCC-HHHhCCCCCCCEEECCC-CcCCc--cCcc--ccccCC
Confidence 5677777777544332 224566677777777776 444321 23345667777777777 35553 2222 466777
Q ss_pred EEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCcc--ceeeccCccc--cc--hhHHHH-----
Q psy5339 95 ELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKL--RYLNARGCEA--VS--DDAITV----- 163 (479)
Q Consensus 95 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L--~~L~l~~~~~--~~--~~~~~~----- 163 (479)
+|+++++ .++..........+++|++|++++. .+....+ ..+++| +.|+++++.. .. ...+..
T Consensus 125 ~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~ 198 (562)
T 3a79_B 125 HLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198 (562)
T ss_dssp EEECCSS-CCSBCCCCGGGGGCTTCCEEEEECS-BCCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEE
T ss_pred EEECCCC-CccccCchHhhcccCcccEEecCCC-ccccCch----hhhhhceeeEEEeecccccccccCcccccccCcce
Confidence 7777763 4443222222344567777777663 3332222 223344 6666665432 00 000000
Q ss_pred -----------------HHHhcCccceEEcCCcccCHH----HHHHHHHcCCCCcEEecCCCCCcChHHHHHHHh--hCC
Q psy5339 164 -----------------LARSCTRLRALDIGKCDVSDA----GLRALAESCPNIKKLSLRQCDLVTDRGVQCIAY--YCR 220 (479)
Q Consensus 164 -----------------~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~ 220 (479)
....+++|+.++++++...-. .... ....++|+.+++.++ .+.+..+..+.. ..+
T Consensus 199 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~-l~~l~~L~~L~L~~~-~l~~~~~~~~~~~~~~~ 276 (562)
T 3a79_B 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE-LTRGPTLLNVTLQHI-ETTWKCSVKLFQFFWPR 276 (562)
T ss_dssp EEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH-HHSCSSCEEEEEEEE-EECHHHHHHHHHHHTTS
T ss_pred EEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH-HhccCcceEEEecCC-cCcHHHHHHHHHhhhcc
Confidence 001124555555555532111 1111 233566666666654 333333332221 234
Q ss_pred CCcEEEccCcccchhhhHHHHhhhccccccccccc---------cC--------CcccceeEEecCCCCCCChhhHHHHH
Q psy5339 221 GLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLT---------AS--------PTQLLLQFLDLTDCSNVDDQGLSLIV 283 (479)
Q Consensus 221 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------~~--------~~~~~L~~L~l~~~~~~~~~~~~~~~ 283 (479)
+|++|++++|.+.......+..... ..+..+. .. ....+|++|+++++. +..... .
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~---~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~~---~ 349 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSE---TALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVC---P 349 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCS---CSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC-CCCCCC---C
T ss_pred cccEEEEeccEeeccccchhhhccc---ccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC-cccccC---c
Confidence 7777777776643210000000000 0000000 00 001236666666542 221110 1
Q ss_pred hcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcH-HHHHHHHcCCCccEEeccccCCCChhHHHHHHH
Q psy5339 284 SNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDF-GLYELAKLGATLRYLSVAKCDQVSDAGLKVIAR 362 (479)
Q Consensus 284 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 362 (479)
..+++|+.|++++ +.+.+.....+ ..+++|+.|++++| .++.. .+.......++|++|++++ +.++.........
T Consensus 350 ~~l~~L~~L~l~~-n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~ 425 (562)
T 3a79_B 350 PSPSSFTFLNFTQ-NVFTDSVFQGC-STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSL-NSLNSHAYDRTCA 425 (562)
T ss_dssp SSCCCCCEEECCS-SCCCTTTTTTC-CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTT-SCCBSCCSSCCCC
T ss_pred cCCCCceEEECCC-Cccccchhhhh-cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCC-CcCCCccChhhhc
Confidence 4578899999988 56666444444 34589999999995 67653 2333345567999999998 4444311111223
Q ss_pred hCCCccEEeccCCCCccHHHHHHHHHhC-CCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcC
Q psy5339 363 RCYKLRYLNARGCEAVSDDAITVLARSC-TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC 441 (479)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 441 (479)
.+++|++|++++|. ++... ...+ ++|++|++++|.++... ..+. .+++|++|++++| .++..... ....+
T Consensus 426 ~l~~L~~L~l~~n~-l~~~~----~~~l~~~L~~L~L~~N~l~~ip-~~~~-~l~~L~~L~L~~N-~l~~l~~~-~~~~l 496 (562)
T 3a79_B 426 WAESILVLNLSSNM-LTGSV----FRCLPPKVKVLDLHNNRIMSIP-KDVT-HLQALQELNVASN-QLKSVPDG-VFDRL 496 (562)
T ss_dssp CCTTCCEEECCSSC-CCGGG----GSSCCTTCSEEECCSSCCCCCC-TTTT-SSCCCSEEECCSS-CCCCCCTT-STTTC
T ss_pred CcccCCEEECCCCC-CCcch----hhhhcCcCCEEECCCCcCcccC-hhhc-CCCCCCEEECCCC-CCCCCCHH-HHhcC
Confidence 56899999999975 44211 1234 69999999999977311 1122 5899999999999 56642221 24577
Q ss_pred ccccEEEecccccC
Q psy5339 442 RGLQQLNIQDCQIS 455 (479)
Q Consensus 442 ~~L~~L~l~~~~i~ 455 (479)
++|+.|++++|++.
T Consensus 497 ~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 497 TSLQYIWLHDNPWD 510 (562)
T ss_dssp TTCCCEECCSCCBC
T ss_pred CCCCEEEecCCCcC
Confidence 99999999999965
No 35
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=5.5e-24 Score=211.96 Aligned_cols=357 Identities=12% Similarity=0.081 Sum_probs=231.2
Q ss_pred ccccccccceeccCCCCCCchh----------------hHHHHHh--cCCcccEEecccccccchhhHhhhhhcCCCCcE
Q psy5339 34 ASPTQLLLQFLDLTDCSNVDDQ----------------GLSLIVS--NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKE 95 (479)
Q Consensus 34 ~~~~l~~L~~L~l~~~~~~~~~----------------~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 95 (479)
.++.+++|++|++++| .+... .++..+. ++++|++|++++| .+... ++.....+++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~ 277 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTK-LPTFLKALPEMQL 277 (636)
T ss_dssp GGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSS-CCTTTTTCSSCCE
T ss_pred HHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCcc-ChHHHhcCCCCCE
Confidence 3778999999999998 46542 1445556 8999999999996 54432 2333456899999
Q ss_pred EEeecCcccCcHHHHHHHHh------CCCccEEecCCCCCCChHHHHH--HHHhCCccceeeccCccccchhHHHHHHHh
Q psy5339 96 LSVSDCTQVTDFGLYELAKL------GATLRYLSVAKCDQVSDAGLKV--IARRCYKLRYLNARGCEAVSDDAITVLARS 167 (479)
Q Consensus 96 L~l~~~~~~~~~~~~~l~~~------~~~L~~L~l~~~~~~~~~~l~~--l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 167 (479)
|+++++..++...++..... +++|++|+++++ .++ .++. ....+++|++|+++++....... ....
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~ 351 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGS 351 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCCcCccchh---hhCC
Confidence 99998543665223332222 489999999986 344 2333 46688999999999875431211 2344
Q ss_pred cCccceEEcCCcccCHHHHHHHHHcCCC-CcEEecCCCCCcChHHHHHHHhh--CCCCcEEEccCcccchhhhHHHHhhh
Q psy5339 168 CTRLRALDIGKCDVSDAGLRALAESCPN-IKKLSLRQCDLVTDRGVQCIAYY--CRGLQQLNIQDCQISVEGYRAVKKYC 244 (479)
Q Consensus 168 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~ 244 (479)
+++|++|++++|.+.. +..-...+++ |+.|+++++. +. .++..+.. +++|+.|++++|.+.......+..
T Consensus 352 l~~L~~L~L~~N~l~~--lp~~l~~l~~~L~~L~Ls~N~-l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-- 424 (636)
T 4eco_A 352 EIKLASLNLAYNQITE--IPANFCGFTEQVENLSFAHNK-LK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP-- 424 (636)
T ss_dssp EEEESEEECCSSEEEE--CCTTSEEECTTCCEEECCSSC-CS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT--
T ss_pred CCCCCEEECCCCcccc--ccHhhhhhcccCcEEEccCCc-Cc--ccchhhhhcccCccCEEECcCCcCCCcchhhhcc--
Confidence 6899999999998761 2122344677 9999999874 43 22222223 348999999999865422111100
Q ss_pred ccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhcccccc------CCCCcEE
Q psy5339 245 KRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSF------CSQLKEL 318 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~------~~~L~~L 318 (479)
........++|++|+++++ .+... ...+...+++|+.|++++ +.+...+...+... +++|+.|
T Consensus 425 --------~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 425 --------LDPTPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLMG-NMLTEIPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp --------TCSSCCCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECCS-SCCSBCCSSSSEETTEECTTGGGCCEE
T ss_pred --------cccccccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECCC-CCCCCcCHHHhccccccccccCCccEE
Confidence 0001113457999999995 44432 223445689999999999 57775443333221 1289999
Q ss_pred eccCCCCCCcHHHHHHH--HcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCC-----CccHHHHHHHHHhCC
Q psy5339 319 SVSDCTQVTDFGLYELA--KLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCE-----AVSDDAITVLARSCT 391 (479)
Q Consensus 319 ~l~~~~~~~~~~~~~l~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~~l~~~~~ 391 (479)
++++| .++. +.... ..+++|++|++++ +.++. +......+++|+.|++++|. .+.. .+......++
T Consensus 494 ~Ls~N-~l~~--lp~~~~~~~l~~L~~L~Ls~-N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~-~~p~~l~~l~ 566 (636)
T 4eco_A 494 DLRFN-KLTK--LSDDFRATTLPYLVGIDLSY-NSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLR-EWPEGITLCP 566 (636)
T ss_dssp ECCSS-CCCB--CCGGGSTTTCTTCCEEECCS-SCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCC-CCCTTGGGCS
T ss_pred ECcCC-cCCc--cChhhhhccCCCcCEEECCC-CCCCC--cChhhhcCCCCCEEECCCCcccccCcccc-cChHHHhcCC
Confidence 99995 6663 22222 2678999999998 45554 22223368999999996532 1111 1122223689
Q ss_pred CCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcc
Q psy5339 392 RLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDL 428 (479)
Q Consensus 392 ~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 428 (479)
+|++|++++|.++..... ..++|+.|++++|+.
T Consensus 567 ~L~~L~Ls~N~l~~ip~~----~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 567 SLTQLQIGSNDIRKVNEK----ITPNISVLDIKDNPN 599 (636)
T ss_dssp SCCEEECCSSCCCBCCSC----CCTTCCEEECCSCTT
T ss_pred CCCEEECCCCcCCccCHh----HhCcCCEEECcCCCC
Confidence 999999999997432111 248899999999953
No 36
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=9.2e-21 Score=174.42 Aligned_cols=258 Identities=19% Similarity=0.279 Sum_probs=162.2
Q ss_pred ccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccc
Q psy5339 170 RLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCI 249 (479)
Q Consensus 170 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~ 249 (479)
.++.++++++.+.+..+..+.. ++++.++++++. +...... ...+++|++|++++|.+...++.....
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~--~~l~~L~l~~n~-l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~------- 115 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSF-MDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILS------- 115 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHH--TTCSEEECTTCE-ECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHT-------
T ss_pred hheeeccccccCCHHHHHhhhh--ccceEEEcCCcc-ccccchh--hccCCCCCEEEccCCCcCHHHHHHHHh-------
Confidence 3566666666655444333221 456666666542 2111100 124566666666666655443333322
Q ss_pred cccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcH
Q psy5339 250 QISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDF 329 (479)
Q Consensus 250 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 329 (479)
..++|++|+++++ .+.+.....+ ..+++|++|++++|..+++..+......+++|++|++++|..+++.
T Consensus 116 ---------~~~~L~~L~L~~~-~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 116 ---------QCSKLQNLSLEGL-RLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 184 (336)
T ss_dssp ---------TBCCCSEEECTTC-BCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred ---------hCCCCCEEeCcCc-ccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence 1224666666664 3444444443 4577888888887556666555555555678888888886577776
Q ss_pred HHHHHHHcCC-CccEEeccccC-CCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCC-CCCHH
Q psy5339 330 GLYELAKLGA-TLRYLSVAKCD-QVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKC-DVSDA 406 (479)
Q Consensus 330 ~~~~l~~~~~-~L~~L~l~~~~-~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~ 406 (479)
++......++ +|++|++++|. .+++..+......+++|++|++++|..+++..+..+. .+++|++|++++| .+++.
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGG
T ss_pred HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHH
Confidence 6666666777 88888888765 5776777777777888888888887666665555443 5788888888888 47776
Q ss_pred HHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccChH
Q psy5339 407 GLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVE 457 (479)
Q Consensus 407 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 457 (479)
++..+.. +++|+.|++++| +++.++..+.. +++.|++++|.++..
T Consensus 264 ~~~~l~~-~~~L~~L~l~~~--i~~~~~~~l~~---~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 264 TLLELGE-IPTLKTLQVFGI--VPDGTLQLLKE---ALPHLQINCSHFTTI 308 (336)
T ss_dssp GGGGGGG-CTTCCEEECTTS--SCTTCHHHHHH---HSTTSEESCCCSCCT
T ss_pred HHHHHhc-CCCCCEEeccCc--cCHHHHHHHHh---hCcceEEecccCccc
Confidence 6655554 888888888888 67767666553 344455777776643
No 37
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.1e-23 Score=208.58 Aligned_cols=379 Identities=18% Similarity=0.136 Sum_probs=210.9
Q ss_pred cCcccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhh
Q psy5339 9 ASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPS 88 (479)
Q Consensus 9 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 88 (479)
++..+..|++||+++|.+..+. ...+..+++|++|++++| .+.... +..+..+++|++|+++++ .++...... ..
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~l~~~~-~~ 121 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGN-PIQSLA-LGAFSGLSSLQKLVAVET-NLASLENFP-IG 121 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTS-CCCCSTTCS-CT
T ss_pred HhhCCCCceEEECCCCcCCccC-cccccCchhCCEEeCcCC-cCCccC-HhhhcCcccccccccccc-ccccCCCcc-cc
Confidence 3455667888888888654432 234677888888888887 343321 233566778888888773 555422111 23
Q ss_pred cCCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCCh---HHHHHHHHhC-----------------------
Q psy5339 89 FCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSD---AGLKVIARRC----------------------- 142 (479)
Q Consensus 89 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~l~~l~~~~----------------------- 142 (479)
.+++|++|+++++ .++...++.....+++|++|+++++. +.. ..+..+. .+
T Consensus 122 ~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~-~L~~~~~~L~l~~n~l~~~~~~~~~ 198 (570)
T 2z63_A 122 HLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAFK 198 (570)
T ss_dssp TCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHH-TCTTCCCEEECTTCCCCEECTTTTT
T ss_pred ccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchh-ccchhhhhcccCCCCceecCHHHhc
Confidence 4677777777763 34332222223445677777776642 211 1111111 11
Q ss_pred -CccceeeccCccccch--------------------------------------------------------hHHHHHH
Q psy5339 143 -YKLRYLNARGCEAVSD--------------------------------------------------------DAITVLA 165 (479)
Q Consensus 143 -~~L~~L~l~~~~~~~~--------------------------------------------------------~~~~~~~ 165 (479)
.+|+.|++.++..... .......
T Consensus 199 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~ 278 (570)
T 2z63_A 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278 (570)
T ss_dssp TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT
T ss_pred cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh
Confidence 1233333332200000 0000112
Q ss_pred HhcCccceEEcCCcccCHHHHHHHHH--------------------cCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEE
Q psy5339 166 RSCTRLRALDIGKCDVSDAGLRALAE--------------------SCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQL 225 (479)
Q Consensus 166 ~~~~~L~~L~l~~~~~~~~~~~~l~~--------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 225 (479)
..+++|++|+++++.+.. +..... .+++|+.|+++++........ ..+++|++|
T Consensus 279 ~~l~~L~~L~l~~~~l~~--l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L 352 (570)
T 2z63_A 279 NCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFL 352 (570)
T ss_dssp GGGTTCSEEEEESCEECS--CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC----CBCTTCCEE
T ss_pred cCcCcccEEEecCccchh--hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc----ccCCCCCEE
Confidence 234667777777665442 111111 234444444444321111000 355667777
Q ss_pred EccCcccchhh--hHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcc
Q psy5339 226 NIQDCQISVEG--YRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDI 303 (479)
Q Consensus 226 ~l~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 303 (479)
++++|.+...+ ...+ ...++|++|+++++. +...... +..+++|+.|++++ +.+...
T Consensus 353 ~l~~n~l~~~~~~~~~~-----------------~~~~~L~~L~l~~n~-l~~~~~~--~~~l~~L~~L~l~~-n~l~~~ 411 (570)
T 2z63_A 353 DLSRNGLSFKGCCSQSD-----------------FGTTSLKYLDLSFNG-VITMSSN--FLGLEQLEHLDFQH-SNLKQM 411 (570)
T ss_dssp ECCSSCCBEEEEEEHHH-----------------HTCSCCCEEECCSCS-EEEEEEE--EETCTTCCEEECTT-SEEESC
T ss_pred eCcCCccCccccccccc-----------------cccCccCEEECCCCc-ccccccc--ccccCCCCEEEccC-Cccccc
Confidence 77776654321 1111 234569999999863 3322111 35789999999999 456554
Q ss_pred hhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHH
Q psy5339 304 GIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAI 383 (479)
Q Consensus 304 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 383 (479)
........+++|++|++++| .+.... ......+++|++|+++++ .+++..+......+++|++|++++|. ++...
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~- 486 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHT-HTRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLS- 486 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTS-CCEECC-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEEC-
T ss_pred cchhhhhcCCCCCEEeCcCC-cccccc-hhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCc-cccCC-
Confidence 33233345689999999996 444321 122345679999999985 34322222233467999999999975 33211
Q ss_pred HHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcc
Q psy5339 384 TVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDL 428 (479)
Q Consensus 384 ~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 428 (479)
......+++|++|++++|.+++.....+ ..+++|+.|++++|+.
T Consensus 487 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 487 PTAFNSLSSLQVLNMASNQLKSVPDGIF-DRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCB
T ss_pred hhhhhcccCCCEEeCCCCcCCCCCHHHh-hcccCCcEEEecCCcc
Confidence 1122368999999999999775433333 3589999999999964
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=1.1e-21 Score=193.39 Aligned_cols=381 Identities=13% Similarity=0.100 Sum_probs=233.0
Q ss_pred cCcccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhh
Q psy5339 9 ASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPS 88 (479)
Q Consensus 9 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 88 (479)
++.....|++|++++|.+..+. ...+..+++|++|++++| .+.. ++.. .+++|++|++++ +.++....+....
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~--lp~~--~l~~L~~L~Ls~-N~l~~l~~p~~~~ 143 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHN-RLQN--ISCC--PMASLRHLDLSF-NDFDVLPVCKEFG 143 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTS-CCCE--ECSC--CCTTCSEEECCS-SCCSBCCCCGGGG
T ss_pred hhccCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCC-cCCc--cCcc--ccccCCEEECCC-CCccccCchHhhc
Confidence 4556678999999999665443 245788999999999998 5553 2222 789999999999 4777644433445
Q ss_pred cCCCCcEEEeecCcccCcHHHHHHHHhCCCc--cEEecCCCCCC-Ch---HHHHH----------------------HHH
Q psy5339 89 FCSQLKELSVSDCTQVTDFGLYELAKLGATL--RYLSVAKCDQV-SD---AGLKV----------------------IAR 140 (479)
Q Consensus 89 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L--~~L~l~~~~~~-~~---~~l~~----------------------l~~ 140 (479)
.+++|++|++++ +.++...+.. +++| +.|+++++... .. ..+.. ...
T Consensus 144 ~l~~L~~L~L~~-n~l~~~~~~~----l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~ 218 (562)
T 3a79_B 144 NLTKLTFLGLSA-AKFRQLDLLP----VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218 (562)
T ss_dssp GCTTCCEEEEEC-SBCCTTTTGG----GTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEES
T ss_pred ccCcccEEecCC-CccccCchhh----hhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhccc
Confidence 689999999998 5666543332 3455 99998774320 10 00000 011
Q ss_pred hCCccceeeccCccccc--hhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHc--CCCCcEEecCCCCCcCh-------
Q psy5339 141 RCYKLRYLNARGCEAVS--DDAITVLARSCTRLRALDIGKCDVSDAGLRALAES--CPNIKKLSLRQCDLVTD------- 209 (479)
Q Consensus 141 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~~L~~L~l~~~~~~~~------- 209 (479)
.+++|+.++++++.... ...........++|+.+++.++.+.+..+..+... .++|+.|+++++. +..
T Consensus 219 ~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ip~~~~ 297 (562)
T 3a79_B 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT-ITERIDREEF 297 (562)
T ss_dssp SEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE-ECSCCCCCCC
T ss_pred ccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE-eeccccchhh
Confidence 24566677776542110 01111223345777778887777766554443321 2477777776652 210
Q ss_pred ------------------------HHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeE
Q psy5339 210 ------------------------RGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQF 265 (479)
Q Consensus 210 ------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 265 (479)
..+..++ ...+|+.|++++|.+. ........++|++
T Consensus 298 ~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~-~~~~L~~L~l~~n~~~-------------------~~~~~~~l~~L~~ 357 (562)
T 3a79_B 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVF-AEMNIKMLSISDTPFI-------------------HMVCPPSPSSFTF 357 (562)
T ss_dssp CCCSCSCCEEEEEEEEECCCSSCHHHHHHHH-HTCCCSEEEEESSCCC-------------------CCCCCSSCCCCCE
T ss_pred hcccccchheehhhcccceeecChhhhhhhh-ccCcceEEEccCCCcc-------------------cccCccCCCCceE
Confidence 1121111 1244666666655532 1122245667999
Q ss_pred EecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcch-hccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEE
Q psy5339 266 LDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIG-IKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYL 344 (479)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 344 (479)
|+++++ .+...... .+..+++|+.|++++ +.++... .......+++|+.|++++| .++...........++|++|
T Consensus 358 L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 358 LNFTQN-VFTDSVFQ-GCSTLKRLQTLILQR-NGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp EECCSS-CCCTTTTT-TCCSCSSCCEEECCS-SCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEE
T ss_pred EECCCC-ccccchhh-hhcccCCCCEEECCC-CCcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEE
Confidence 999995 44442222 235789999999999 5776532 2222234589999999995 55431111123345799999
Q ss_pred eccccCCCChhHHHHHHHhC-CCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEec
Q psy5339 345 SVAKCDQVSDAGLKVIARRC-YKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSL 423 (479)
Q Consensus 345 ~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l 423 (479)
++++ +.++.... ..+ ++|+.|++++|. ++. +..-...+++|++|++++|.++..... ....+++|+.|++
T Consensus 434 ~l~~-n~l~~~~~----~~l~~~L~~L~L~~N~-l~~--ip~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~l 504 (562)
T 3a79_B 434 NLSS-NMLTGSVF----RCLPPKVKVLDLHNNR-IMS--IPKDVTHLQALQELNVASNQLKSVPDG-VFDRLTSLQYIWL 504 (562)
T ss_dssp ECCS-SCCCGGGG----SSCCTTCSEEECCSSC-CCC--CCTTTTSSCCCSEEECCSSCCCCCCTT-STTTCTTCCCEEC
T ss_pred ECCC-CCCCcchh----hhhcCcCCEEECCCCc-Ccc--cChhhcCCCCCCEEECCCCCCCCCCHH-HHhcCCCCCEEEe
Confidence 9998 45654322 233 699999999974 442 222122689999999999997742221 1335899999999
Q ss_pred cCCcccchhhHH
Q psy5339 424 RQCDLVTDRGVQ 435 (479)
Q Consensus 424 ~~~~~l~~~~~~ 435 (479)
++|+...+....
T Consensus 505 ~~N~~~c~c~~~ 516 (562)
T 3a79_B 505 HDNPWDCTCPGI 516 (562)
T ss_dssp CSCCBCCCHHHH
T ss_pred cCCCcCCCcchH
Confidence 999754444433
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=5.1e-21 Score=182.39 Aligned_cols=307 Identities=18% Similarity=0.181 Sum_probs=185.4
Q ss_pred cccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHH
Q psy5339 33 TASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYEL 112 (479)
Q Consensus 33 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 112 (479)
..++.+++|++|+++++ .+... + .+..+++|++|+++++ .++... ...+++|++|+++++ .++...
T Consensus 36 ~~~~~l~~L~~L~Ls~n-~l~~~--~-~l~~l~~L~~L~Ls~n-~l~~~~----~~~l~~L~~L~Ls~N-~l~~~~---- 101 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNS-SITDM--T-GIEKLTGLTKLICTSN-NITTLD----LSQNTNLTYLACDSN-KLTNLD---- 101 (457)
T ss_dssp EEHHHHTTCCEEECCSS-CCCCC--T-TGGGCTTCSEEECCSS-CCSCCC----CTTCTTCSEEECCSS-CCSCCC----
T ss_pred cChhHcCCCCEEEccCC-CcccC--h-hhcccCCCCEEEccCC-cCCeEc----cccCCCCCEEECcCC-CCceee----
Confidence 35678899999999998 56542 2 3588999999999994 777632 355799999999984 566532
Q ss_pred HHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceEEcCCcc-cCHHHHHHHHH
Q psy5339 113 AKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD-VSDAGLRALAE 191 (479)
Q Consensus 113 ~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~ 191 (479)
...+++|++|+++++ .++... ...+++|++|+++++..... . ...+++|++|++++|. +.... ..
T Consensus 102 ~~~l~~L~~L~L~~N-~l~~l~----~~~l~~L~~L~l~~N~l~~l-~----l~~l~~L~~L~l~~n~~~~~~~----~~ 167 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTN-KLTKLD----VSQNPLLTYLNCARNTLTEI-D----VSHNTQLTELDCHLNKKITKLD----VT 167 (457)
T ss_dssp CTTCTTCCEEECCSS-CCSCCC----CTTCTTCCEEECTTSCCSCC-C----CTTCTTCCEEECTTCSCCCCCC----CT
T ss_pred cCCCCcCCEEECCCC-cCCeec----CCCCCcCCEEECCCCcccee-c----cccCCcCCEEECCCCCcccccc----cc
Confidence 345789999999885 343321 45678899999887653321 1 3346788888888884 33221 23
Q ss_pred cCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCC
Q psy5339 192 SCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDC 271 (479)
Q Consensus 192 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 271 (479)
.+++|+.|+++++ .++... +..+++|+.|++++|.+... .....++|++|+++++
T Consensus 168 ~l~~L~~L~ls~n-~l~~l~----l~~l~~L~~L~l~~N~l~~~--------------------~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 168 PQTQLTTLDCSFN-KITELD----VSQNKLLNRLNCDTNNITKL--------------------DLNQNIQLTFLDCSSN 222 (457)
T ss_dssp TCTTCCEEECCSS-CCCCCC----CTTCTTCCEEECCSSCCSCC--------------------CCTTCTTCSEEECCSS
T ss_pred cCCcCCEEECCCC-ccceec----cccCCCCCEEECcCCcCCee--------------------ccccCCCCCEEECcCC
Confidence 4688888888877 344322 45778888888888875532 1233456888888874
Q ss_pred CCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCC
Q psy5339 272 SNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQ 351 (479)
Q Consensus 272 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 351 (479)
.+.... ...+++|+.|++++ +.++..... .+++|+.|+++++ +|+.|+++++..
T Consensus 223 -~l~~ip----~~~l~~L~~L~l~~-N~l~~~~~~----~l~~L~~L~l~~n----------------~L~~L~l~~n~~ 276 (457)
T 3bz5_A 223 -KLTEID----VTPLTQLTYFDCSV-NPLTELDVS----TLSKLTTLHCIQT----------------DLLEIDLTHNTQ 276 (457)
T ss_dssp -CCSCCC----CTTCTTCSEEECCS-SCCSCCCCT----TCTTCCEEECTTC----------------CCSCCCCTTCTT
T ss_pred -cccccC----ccccCCCCEEEeeC-CcCCCcCHH----HCCCCCEEeccCC----------------CCCEEECCCCcc
Confidence 444422 35678888888888 566655432 2355655555442 233333333222
Q ss_pred CChhHHHHHHHhCCCccEEeccCCCCccHHH-----HHH-HHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccC
Q psy5339 352 VSDAGLKVIARRCYKLRYLNARGCEAVSDDA-----ITV-LARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQ 425 (479)
Q Consensus 352 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~~-l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~ 425 (479)
..... ...+++|+.|++++|....... +.. -...+++|++|++++|.++.. .+ ..+++|+.|++++
T Consensus 277 ~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l-~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 277 LIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DV-SHNTKLKSLSCVN 348 (457)
T ss_dssp CCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CC-TTCTTCSEEECCS
T ss_pred CCccc----ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---cc-ccCCcCcEEECCC
Confidence 21111 1123444444444432111000 000 001246677777777776542 12 2467777777777
Q ss_pred C
Q psy5339 426 C 426 (479)
Q Consensus 426 ~ 426 (479)
|
T Consensus 349 N 349 (457)
T 3bz5_A 349 A 349 (457)
T ss_dssp S
T ss_pred C
Confidence 6
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=4.2e-21 Score=180.35 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=56.8
Q ss_pred hCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCc
Q psy5339 363 RCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCR 442 (479)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 442 (479)
.+++|++|++++|. ++. +......+++|++|++++|+++... ..+ ..+++|++|++++| .++... ...++
T Consensus 270 ~l~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~L~~n~l~~~~-~~~-~~l~~L~~L~L~~N-~i~~~~----~~~~~ 339 (390)
T 3o6n_A 270 KMQRLERLYISNNR-LVA--LNLYGQPIPTLKVLDLSHNHLLHVE-RNQ-PQFDRLENLYLDHN-SIVTLK----LSTHH 339 (390)
T ss_dssp TCSSCCEEECCSSC-CCE--EECSSSCCTTCCEEECCSSCCCCCG-GGH-HHHTTCSEEECCSS-CCCCCC----CCTTC
T ss_pred ccccCCEEECCCCc-Ccc--cCcccCCCCCCCEEECCCCcceecC-ccc-cccCcCCEEECCCC-ccceeC----chhhc
Confidence 34556666665543 221 1111124677888888887765321 112 23677888888887 355443 24567
Q ss_pred cccEEEecccccChHHHHHHHHhhhhcc
Q psy5339 443 GLQQLNIQDCQISVEGYRAVKKYCKRCI 470 (479)
Q Consensus 443 ~L~~L~l~~~~i~~~~~~~l~~~~~~~~ 470 (479)
+|+.|++++|+++......+....++..
T Consensus 340 ~L~~L~l~~N~~~~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 340 TLKNLTLSHNDWDCNSLRALFRNVARPA 367 (390)
T ss_dssp CCSEEECCSSCEEHHHHHHHTTTCCTTT
T ss_pred cCCEEEcCCCCccchhHHHHHHHHHhhc
Confidence 8888888888877776666655554433
No 41
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=2.5e-18 Score=161.08 Aligned_cols=185 Identities=21% Similarity=0.317 Sum_probs=136.4
Q ss_pred HhcCCCccEEEeccCCccCcchhccc---cccCCCCcEEeccCCCCCCcHHHHHHHHc---C---------CCccEEecc
Q psy5339 283 VSNCPQLIYLYLRRCVKLTDIGIKYV---PSFCSQLKELSVSDCTQVTDFGLYELAKL---G---------ATLRYLSVA 347 (479)
Q Consensus 283 ~~~~~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~---------~~L~~L~l~ 347 (479)
+..+++|++|++++ +.+.+.+...+ ...+++|++|++++| .+++.+...+... . ++|++|+++
T Consensus 90 l~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 90 LLKCPKLHTVRLSD-NAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp HTTCTTCCEEECCS-CCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HhhCCcccEEECCC-CcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 35678999999988 57776543322 234589999999995 6765554444332 2 799999999
Q ss_pred ccCCCChhHHHH---HHHhCCCccEEeccCCCCccHHHHHHHHH----hCCCCcEEEecCCCCCHHHHHHHH---hhCCC
Q psy5339 348 KCDQVSDAGLKV---IARRCYKLRYLNARGCEAVSDDAITVLAR----SCTRLRALDIGKCDVSDAGLRALA---ESCPN 417 (479)
Q Consensus 348 ~~~~l~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~i~~~~~~~l~---~~~~~ 417 (479)
+ +.+++.++.. ....+++|++|++++| .+++.++..+.. .+++|++|+|++|.+++.+...+. ..+++
T Consensus 168 ~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 168 R-NRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp S-SCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred C-CCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 9 5677666664 3447899999999997 577776555443 789999999999999987666554 35899
Q ss_pred CcEEeccCCcccchhhHHHHHH---c--CccccEEEecccccChHHHHHHHHh----hhhccee
Q psy5339 418 IKKLSLRQCDLVTDRGVQCIAY---Y--CRGLQQLNIQDCQISVEGYRAVKKY----CKRCIIE 472 (479)
Q Consensus 418 L~~L~l~~~~~l~~~~~~~~~~---~--~~~L~~L~l~~~~i~~~~~~~l~~~----~~~~~i~ 472 (479)
|++|++++| .+++.+...+.. . +++|+.|++++|.++..++..+... ++++...
T Consensus 246 L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 246 LRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp CCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred cCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 999999999 578766554333 2 7999999999999999877666553 3555543
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=1.2e-21 Score=196.82 Aligned_cols=432 Identities=16% Similarity=0.088 Sum_probs=227.1
Q ss_pred cccCcccc--hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHh
Q psy5339 7 LTASPTQL--LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIK 84 (479)
Q Consensus 7 ~~~~~~~~--~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (479)
++++|... .+++|||++|.+..+.. ..|..+++|++|+|++| .++... +..+.++++|++|++++ ++++.....
T Consensus 43 l~~vP~~lp~~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~Ls~N-~i~~i~-~~~f~~L~~L~~L~Ls~-N~l~~l~~~ 118 (635)
T 4g8a_A 43 FYKIPDNLPFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTG-NPIQSLALG 118 (635)
T ss_dssp CSSCCSSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTT-CCCCEECGG
T ss_pred cCccCCCCCcCCCEEEeeCCCCCCCCH-HHHhCCCCCCEEECCCC-cCCCcC-hhHhcCCCCCCEEEccC-CcCCCCCHH
Confidence 45677654 68999999997655533 35888999999999998 555322 23468899999999999 477654333
Q ss_pred hhhhcCCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCcccc--chhHHH
Q psy5339 85 YVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAV--SDDAIT 162 (479)
Q Consensus 85 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~--~~~~~~ 162 (479)
. ...+++|++|+++++ .++...- .....+++|++|+++++ .+.....+.....+++|++|+++++... ....+.
T Consensus 119 ~-f~~L~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 119 A-FSGLSSLQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp G-GTTCTTCCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred H-hcCCCCCCEEECCCC-cCCCCCh-hhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 3 355899999999985 4543211 11345689999999885 3332223334567899999999986532 223333
Q ss_pred HHHHhcCc-----------------------cceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCC-----CcC---h--
Q psy5339 163 VLARSCTR-----------------------LRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCD-----LVT---D-- 209 (479)
Q Consensus 163 ~~~~~~~~-----------------------L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-----~~~---~-- 209 (479)
.+...... ++.+++.++.............++.++...+.... .+. .
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 33222112 23344444433333333333444444433321000 000 0
Q ss_pred ---------------------HHHHHH----------------------HhhCCCCcEEEccCcccchhhhHHHHhhhcc
Q psy5339 210 ---------------------RGVQCI----------------------AYYCRGLQQLNIQDCQISVEGYRAVKKYCKR 246 (479)
Q Consensus 210 ---------------------~~~~~~----------------------~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 246 (479)
...... +.....++.|++.++.+.......+......
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l 354 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 354 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEE
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhc
Confidence 000000 1122344555555444221110000000000
Q ss_pred --ccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcc---------------------
Q psy5339 247 --CCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDI--------------------- 303 (479)
Q Consensus 247 --~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--------------------- 303 (479)
..............++|+.++++++..............+++|+.+++..+ .....
T Consensus 355 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~~~~~~l~~L~~l~l~~~~~~ 433 (635)
T 4g8a_A 355 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLK 433 (635)
T ss_dssp EEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC-SEEEECSCCTTCTTCCEEECTTSEEE
T ss_pred ccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccc-ccccccccccccccccchhhhhcccc
Confidence 000001111222345677777776422111111111234555555555442 11111
Q ss_pred --hhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHH
Q psy5339 304 --GIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDD 381 (479)
Q Consensus 304 --~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 381 (479)
........+++++.++++.+ .+... ........+.++.|+++++...... .......+++|++|++++|. ++..
T Consensus 434 ~~~~~~~~~~l~~l~~l~ls~n-~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~-~~~~~~~l~~L~~L~Ls~N~-L~~l 509 (635)
T 4g8a_A 434 QMSEFSVFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQ-LEQL 509 (635)
T ss_dssp STTSSCTTTTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSC-CCEE
T ss_pred cccccccccccccccccccccc-ccccc-cccccccchhhhhhhhhhccccccc-CchhhhhccccCEEECCCCc-cCCc
Confidence 00111122345666666553 32221 1122234568888888874322211 11223467899999999975 3321
Q ss_pred HHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcC-ccccEEEecccccC
Q psy5339 382 AITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC-RGLQQLNIQDCQIS 455 (479)
Q Consensus 382 ~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~i~ 455 (479)
. ......+++|++|+|++|.++......+ ..+++|++|++++| .++......+ ..+ ++|+.|++++|+++
T Consensus 510 ~-~~~f~~l~~L~~L~Ls~N~l~~l~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l-~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 510 S-PTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp C-TTTTTTCTTCCEEECTTSCCCBCCCGGG-TTCTTCCEEECTTS-CCCBCCSSCT-TCCCTTCCEEECTTCCBC
T ss_pred C-hHHHcCCCCCCEEECCCCcCCCCChhHH-hCCCCCCEEECCCC-cCCCCCHHHH-HhhhCcCCEEEeeCCCCc
Confidence 1 1122368999999999998765332233 34899999999999 5554333222 234 68999999998854
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=2.8e-19 Score=167.94 Aligned_cols=317 Identities=14% Similarity=0.159 Sum_probs=162.5
Q ss_pred cccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHhC
Q psy5339 37 TQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLG 116 (479)
Q Consensus 37 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 116 (479)
.+.++++++++++ .++... ...+..+++|++|+++++ .+++.....+ ..+++|++|+++++ .++... ......+
T Consensus 43 ~l~~l~~l~l~~~-~l~~l~-~~~~~~l~~L~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l 116 (390)
T 3o6n_A 43 TLNNQKIVTFKNS-TMRKLP-AALLDSFRQVELLNLNDL-QIEEIDTYAF-AYAHTIQKLYMGFN-AIRYLP-PHVFQNV 116 (390)
T ss_dssp GGCCCSEEEEESC-EESEEC-THHHHHCCCCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS-CCCCCC-TTTTTTC
T ss_pred ccCCceEEEecCC-chhhCC-hhHhcccccCcEEECCCC-cccccChhhc-cCCCCcCEEECCCC-CCCcCC-HHHhcCC
Confidence 3567777777775 343322 234566777777777773 5554322222 34677777777764 343321 1112345
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHcCCCC
Q psy5339 117 ATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNI 196 (479)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 196 (479)
++|++|+++++ .+... ...+...+++|++|+++++..... . ......+++|++|+++++.++... ...+++|
T Consensus 117 ~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L 188 (390)
T 3o6n_A 117 PLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNNNLERI-E-DDTFQATTSLQNLQLSSNRLTHVD----LSLIPSL 188 (390)
T ss_dssp TTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCBC-C-TTTTSSCTTCCEEECCSSCCSBCC----GGGCTTC
T ss_pred CCCCEEECCCC-ccCcC-CHHHhcCCCCCcEEECCCCccCcc-C-hhhccCCCCCCEEECCCCcCCccc----ccccccc
Confidence 66777777664 22211 011124566777777776542211 1 111233467777777777765432 2346777
Q ss_pred cEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCCh
Q psy5339 197 KKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDD 276 (479)
Q Consensus 197 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 276 (479)
+.++++++ .+... ...++|++|++++|.+... + ....++|++|+++++ .+.+
T Consensus 189 ~~L~l~~n-~l~~~------~~~~~L~~L~l~~n~l~~~-------------------~-~~~~~~L~~L~l~~n-~l~~ 240 (390)
T 3o6n_A 189 FHANVSYN-LLSTL------AIPIAVEELDASHNSINVV-------------------R-GPVNVELTILKLQHN-NLTD 240 (390)
T ss_dssp SEEECCSS-CCSEE------ECCSSCSEEECCSSCCCEE-------------------E-CCCCSSCCEEECCSS-CCCC
T ss_pred ceeecccc-ccccc------CCCCcceEEECCCCeeeec-------------------c-ccccccccEEECCCC-CCcc
Confidence 77777765 33221 2345677777777764321 1 112245777777764 3332
Q ss_pred hhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhH
Q psy5339 277 QGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAG 356 (479)
Q Consensus 277 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 356 (479)
. .....+++|+.|++++ +.+.......+.. +++|+.|++++| .++... ...
T Consensus 241 ~---~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~-l~~L~~L~L~~n-~l~~~~--~~~--------------------- 291 (390)
T 3o6n_A 241 T---AWLLNYPGLVEVDLSY-NELEKIMYHPFVK-MQRLERLYISNN-RLVALN--LYG--------------------- 291 (390)
T ss_dssp C---GGGGGCTTCSEEECCS-SCCCEEESGGGTT-CSSCCEEECCSS-CCCEEE--CSS---------------------
T ss_pred c---HHHcCCCCccEEECCC-CcCCCcChhHccc-cccCCEEECCCC-cCcccC--ccc---------------------
Confidence 2 1234567777777776 4555543333322 366777777664 333210 001
Q ss_pred HHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHH
Q psy5339 357 LKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQC 436 (479)
Q Consensus 357 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~ 436 (479)
..+++|++|++++|. ++. +......+++|++|++++|++++.. ...+++|+.|++++|+ ++......
T Consensus 292 -----~~l~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~L~~L~l~~N~-~~~~~~~~ 358 (390)
T 3o6n_A 292 -----QPIPTLKVLDLSHNH-LLH--VERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHND-WDCNSLRA 358 (390)
T ss_dssp -----SCCTTCCEEECCSSC-CCC--CGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSC-EEHHHHHH
T ss_pred -----CCCCCCCEEECCCCc-cee--cCccccccCcCCEEECCCCccceeC----chhhccCCEEEcCCCC-ccchhHHH
Confidence 133555555555543 221 1111123566666666666654432 2235666666666663 44444433
Q ss_pred H
Q psy5339 437 I 437 (479)
Q Consensus 437 ~ 437 (479)
.
T Consensus 359 ~ 359 (390)
T 3o6n_A 359 L 359 (390)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=5.5e-18 Score=157.12 Aligned_cols=80 Identities=13% Similarity=0.108 Sum_probs=40.0
Q ss_pred HHHHHhcCccceEEcCCcccCHHHHH---HHHHcCC-CCcEEecCCCCCcChHH---HHHHHhhC-CCCcEEEccCcccc
Q psy5339 162 TVLARSCTRLRALDIGKCDVSDAGLR---ALAESCP-NIKKLSLRQCDLVTDRG---VQCIAYYC-RGLQQLNIQDCQIS 233 (479)
Q Consensus 162 ~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~-~L~~L~l~~~~~~~~~~---~~~~~~~~-~~L~~L~l~~~~~~ 233 (479)
..+....++|++|++++|.+++.... .....++ +|++|+++++ .++..+ +...+... ++|++|++++|.+.
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 33444444577777776665443321 2223345 6666666665 343322 22222232 66666666666655
Q ss_pred hhhhHHHHh
Q psy5339 234 VEGYRAVKK 242 (479)
Q Consensus 234 ~~~~~~l~~ 242 (479)
+.+...+..
T Consensus 94 ~~~~~~l~~ 102 (362)
T 3goz_A 94 YKSSDELVK 102 (362)
T ss_dssp GSCHHHHHH
T ss_pred hHHHHHHHH
Confidence 554444433
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.79 E-value=4.1e-20 Score=175.96 Aligned_cols=162 Identities=19% Similarity=0.217 Sum_probs=75.2
Q ss_pred cccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcC
Q psy5339 259 TQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLG 338 (479)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 338 (479)
..++|++|+++++ .+... ...+++|+.|++++ +.+... ....++|+.|++++| .++.. ....
T Consensus 235 ~l~~L~~L~l~~N-~l~~l-----~~~~~~L~~L~l~~-N~l~~l-----~~~~~~L~~L~ls~N-~l~~l-----~~~~ 296 (454)
T 1jl5_A 235 NLPFLTTIYADNN-LLKTL-----PDLPPSLEALNVRD-NYLTDL-----PELPQSLTFLDVSEN-IFSGL-----SELP 296 (454)
T ss_dssp TCTTCCEEECCSS-CCSSC-----CSCCTTCCEEECCS-SCCSCC-----CCCCTTCCEEECCSS-CCSEE-----SCCC
T ss_pred CCCCCCEEECCCC-cCCcc-----cccccccCEEECCC-Cccccc-----CcccCcCCEEECcCC-ccCcc-----cCcC
Confidence 4445666666653 22211 01235666666666 344331 112356777777764 44431 0123
Q ss_pred CCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCC
Q psy5339 339 ATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNI 418 (479)
Q Consensus 339 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 418 (479)
++|++|++++ +.++.. ....++|++|++++|. ++. +...+++|++|++++|.++. +.. .+++|
T Consensus 297 ~~L~~L~l~~-N~l~~i-----~~~~~~L~~L~Ls~N~-l~~-----lp~~~~~L~~L~L~~N~l~~--lp~---~l~~L 359 (454)
T 1jl5_A 297 PNLYYLNASS-NEIRSL-----CDLPPSLEELNVSNNK-LIE-----LPALPPRLERLIASFNHLAE--VPE---LPQNL 359 (454)
T ss_dssp TTCCEEECCS-SCCSEE-----CCCCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSCCSC--CCC---CCTTC
T ss_pred CcCCEEECcC-CcCCcc-----cCCcCcCCEEECCCCc-ccc-----ccccCCcCCEEECCCCcccc--ccc---hhhhc
Confidence 5777777776 344331 1112478888888764 332 11235788888888888663 221 36788
Q ss_pred cEEeccCCcccch--h---hH---------HHHHHcCccccEEEecccccCh
Q psy5339 419 KKLSLRQCDLVTD--R---GV---------QCIAYYCRGLQQLNIQDCQISV 456 (479)
Q Consensus 419 ~~L~l~~~~~l~~--~---~~---------~~~~~~~~~L~~L~l~~~~i~~ 456 (479)
++|++++|. ++. . .+ ..+...+++|+.|++++|+++.
T Consensus 360 ~~L~L~~N~-l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 360 KQLHVEYNP-LREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CEEECCSSC-CSSCCCCCTTCCEEECCC------------------------
T ss_pred cEEECCCCC-CCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 888888884 333 1 10 0111123778888898888876
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.2e-19 Score=179.81 Aligned_cols=60 Identities=8% Similarity=0.141 Sum_probs=35.6
Q ss_pred ccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecC
Q psy5339 38 QLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDC 101 (479)
Q Consensus 38 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 101 (479)
+.+++.++++++ .+... ...++..+++|++|+++++ .++......+ ..+++|++|+++++
T Consensus 50 l~~l~~l~l~~~-~l~~l-p~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n 109 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKL-PAALLDSFRQVELLNLNDL-QIEEIDTYAF-AYAHTIQKLYMGFN 109 (597)
T ss_dssp GCCCSEEEESSC-EESEE-CTHHHHHCCCCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS
T ss_pred CCCceEEEeeCC-CCCCc-CHHHHccCCCCcEEECCCC-CCCCCChHHh-cCCCCCCEEECCCC
Confidence 466777777775 33322 1334566777888888773 5554322222 34677777777764
No 47
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=9e-20 Score=173.62 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=8.1
Q ss_pred CCCCcEEEecCCCCC
Q psy5339 390 CTRLRALDIGKCDVS 404 (479)
Q Consensus 390 ~~~L~~L~l~~~~i~ 404 (479)
+++|++|++++|+++
T Consensus 356 l~~L~~L~L~~N~l~ 370 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLR 370 (454)
T ss_dssp CTTCCEEECCSSCCS
T ss_pred hhhccEEECCCCCCC
Confidence 455555555555543
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=7.3e-19 Score=174.11 Aligned_cols=317 Identities=15% Similarity=0.164 Sum_probs=187.7
Q ss_pred chhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCC
Q psy5339 14 LLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQL 93 (479)
Q Consensus 14 ~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 93 (479)
..++.++++++.+..++. ..+..+++|++|++++| .+.... +..+..+++|++|+++++ .++.... .....+++|
T Consensus 51 ~~l~~l~l~~~~l~~lp~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L 125 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDL-QIEEID-TYAFAYAHTIQKLYMGFN-AIRYLPP-HVFQNVPLL 125 (597)
T ss_dssp CCCSEEEESSCEESEECT-HHHHHCCCCSEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred CCceEEEeeCCCCCCcCH-HHHccCCCCcEEECCCC-CCCCCC-hHHhcCCCCCCEEECCCC-cCCCCCH-HHHcCCCCC
Confidence 457888898886554432 23677899999999998 555422 234578999999999995 6765332 233557999
Q ss_pred cEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccce
Q psy5339 94 KELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRA 173 (479)
Q Consensus 94 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 173 (479)
++|+++++ .++... ..+...+++|++|+++++. +.... ...+..+++|++
T Consensus 126 ~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~Ls~N~-l~~~~---------------------------~~~~~~l~~L~~ 175 (597)
T 3oja_B 126 TVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNNN-LERIE---------------------------DDTFQATTSLQN 175 (597)
T ss_dssp CEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCBCC---------------------------TTTTTTCTTCCE
T ss_pred CEEEeeCC-CCCCCC-HHHhccCCCCCEEEeeCCc-CCCCC---------------------------hhhhhcCCcCcE
Confidence 99999985 444211 1112334556666665531 11100 001122355566
Q ss_pred EEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccc
Q psy5339 174 LDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISC 253 (479)
Q Consensus 174 L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (479)
|++++|.++... ...+++|+.|+++++ .+.. +...++|+.|++++|.+...
T Consensus 176 L~L~~N~l~~~~----~~~l~~L~~L~l~~n-~l~~------l~~~~~L~~L~ls~n~l~~~------------------ 226 (597)
T 3oja_B 176 LQLSSNRLTHVD----LSLIPSLFHANVSYN-LLST------LAIPIAVEELDASHNSINVV------------------ 226 (597)
T ss_dssp EECTTSCCSBCC----GGGCTTCSEEECCSS-CCSE------EECCTTCSEEECCSSCCCEE------------------
T ss_pred EECcCCCCCCcC----hhhhhhhhhhhcccC-cccc------ccCCchhheeeccCCccccc------------------
Confidence 666655544321 233566777776665 2322 12345677777777764321
Q ss_pred cccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHH
Q psy5339 254 LTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYE 333 (479)
Q Consensus 254 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 333 (479)
+. ...++|+.|+++++ .+.+. ..+..+++|+.|++++ +.+.......+.. +++|+.|++++| .++.. ..
T Consensus 227 -~~-~~~~~L~~L~L~~n-~l~~~---~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~-l~~L~~L~Ls~N-~l~~l--~~ 295 (597)
T 3oja_B 227 -RG-PVNVELTILKLQHN-NLTDT---AWLLNYPGLVEVDLSY-NELEKIMYHPFVK-MQRLERLYISNN-RLVAL--NL 295 (597)
T ss_dssp -EC-SCCSCCCEEECCSS-CCCCC---GGGGGCTTCSEEECCS-SCCCEEESGGGTT-CSSCCEEECTTS-CCCEE--EC
T ss_pred -cc-ccCCCCCEEECCCC-CCCCC---hhhccCCCCCEEECCC-CccCCCCHHHhcC-ccCCCEEECCCC-CCCCC--Cc
Confidence 11 11235788888775 33332 2235678888888888 5666654444433 478888888884 55542 11
Q ss_pred HHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHh
Q psy5339 334 LAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAE 413 (479)
Q Consensus 334 l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~ 413 (479)
....+++|+.|+++++ .++.... . ...+++|+.|++++|...+ .. ...+++|+.|++++|++.......+..
T Consensus 296 ~~~~l~~L~~L~Ls~N-~l~~i~~-~-~~~l~~L~~L~L~~N~l~~-~~----~~~~~~L~~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 296 YGQPIPTLKVLDLSHN-HLLHVER-N-QPQFDRLENLYLDHNSIVT-LK----LSTHHTLKNLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp SSSCCTTCCEEECCSS-CCCCCGG-G-HHHHTTCSEEECCSSCCCC-CC----CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred ccccCCCCcEEECCCC-CCCccCc-c-cccCCCCCEEECCCCCCCC-cC----hhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence 2233568888888874 4442211 1 1345788888888865322 11 235788888888888887776666654
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=8.4e-19 Score=175.98 Aligned_cols=410 Identities=17% Similarity=0.104 Sum_probs=223.3
Q ss_pred cCcccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhh
Q psy5339 9 ASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPS 88 (479)
Q Consensus 9 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 88 (479)
++..+..||+|||++|.+..+. ..+|..+++|++|+|++| .+.... +..+.++++|++|+++++ .++.... ....
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N-~l~~l~-~~~f~~L~~L~~L~Ls~N-~l~~l~~-~~~~ 145 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGN-PIQSLA-LGAFSGLSSLQKLVAVET-NLASLEN-FPIG 145 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTC-CCCEEC-GGGGTTCTTCCEEECTTS-CCCCSTT-CCCT
T ss_pred HHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCC-cCCCCC-HHHhcCCCCCCEEECCCC-cCCCCCh-hhhh
Confidence 3556678999999999655543 335888999999999998 555422 234688999999999994 7765322 2235
Q ss_pred cCCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCC--CChHHHHHHHHhCCcc---------------------
Q psy5339 89 FCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQ--VSDAGLKVIARRCYKL--------------------- 145 (479)
Q Consensus 89 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~l~~l~~~~~~L--------------------- 145 (479)
.+++|++|+++++ .++..........+++|++|+++++.- +....+..+...-...
T Consensus 146 ~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~ 224 (635)
T 4g8a_A 146 HLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 224 (635)
T ss_dssp TCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC
T ss_pred cCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccch
Confidence 6899999999984 555433344456678999999987521 2222333332211111
Q ss_pred --ceeeccCccccchhHHHHHHHhcCccceEEcC----------------------------------------------
Q psy5339 146 --RYLNARGCEAVSDDAITVLARSCTRLRALDIG---------------------------------------------- 177 (479)
Q Consensus 146 --~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~---------------------------------------------- 177 (479)
+.+++.++. ............++.++...+.
T Consensus 225 ~~~~l~l~~n~-~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 303 (635)
T 4g8a_A 225 RLHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFN 303 (635)
T ss_dssp EEEEEEEESCC-SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTG
T ss_pred hhhhhhhhccc-ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhh
Confidence 222222211 1112222222333333322221
Q ss_pred -----------CcccCHHHHHHHHHcCCCCcEEecCCCCCc--ChHHHH---------------HHHhhCCCCcEEEccC
Q psy5339 178 -----------KCDVSDAGLRALAESCPNIKKLSLRQCDLV--TDRGVQ---------------CIAYYCRGLQQLNIQD 229 (479)
Q Consensus 178 -----------~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--~~~~~~---------------~~~~~~~~L~~L~l~~ 229 (479)
++.+.. +.. ......++.|++.++... ....+. .....+++|+.+++++
T Consensus 304 ~~~~l~~l~~~~~~~~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~ 380 (635)
T 4g8a_A 304 CLTNVSSFSLVSVTIER--VKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 380 (635)
T ss_dssp GGTTCSEEEEESCEEEE--CGG-GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCS
T ss_pred hhccccccccccccccc--ccc-cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhc
Confidence 111000 000 112334555555443100 000000 0011467888888888
Q ss_pred cccchhhh--HHHHhhhc------cccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccC
Q psy5339 230 CQISVEGY--RAVKKYCK------RCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLT 301 (479)
Q Consensus 230 ~~~~~~~~--~~l~~~~~------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 301 (479)
+.+...+. ........ ..+............++|+.+++.++....... ...+..+++++.++++. +.+.
T Consensus 381 n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~l~~l~~l~ls~-n~l~ 458 (635)
T 4g8a_A 381 NGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISH-THTR 458 (635)
T ss_dssp SCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS-SCTTTTCTTCCEEECTT-SCCE
T ss_pred cccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc-ccccccccccccccccc-cccc
Confidence 87543221 11110000 000000001122345567788777643222211 11234678888999888 4555
Q ss_pred cchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHH
Q psy5339 302 DIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDD 381 (479)
Q Consensus 302 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 381 (479)
......+ ..++.|+.|++++|..... .........++|++|+++++ .++...... ...+++|++|++++|. ++..
T Consensus 459 ~~~~~~~-~~~~~L~~L~Ls~N~~~~~-~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~-f~~l~~L~~L~Ls~N~-l~~l 533 (635)
T 4g8a_A 459 VAFNGIF-NGLSSLEVLKMAGNSFQEN-FLPDIFTELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLNMSHNN-FFSL 533 (635)
T ss_dssp ECCTTTT-TTCTTCCEEECTTCEEGGG-EECSCCTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTSC-CCBC
T ss_pred ccccccc-ccchhhhhhhhhhcccccc-cCchhhhhccccCEEECCCC-ccCCcChHH-HcCCCCCCEEECCCCc-CCCC
Confidence 4433333 3448999999998632221 11122344579999999984 555432222 2367999999999974 3321
Q ss_pred HHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhC-CCCcEEeccCCcccchhhHHHH
Q psy5339 382 AITVLARSCTRLRALDIGKCDVSDAGLRALAESC-PNIKKLSLRQCDLVTDRGVQCI 437 (479)
Q Consensus 382 ~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~~~~~ 437 (479)
. ......+++|++|++++|.++......+.. + ++|+.|++++|+..-+.....+
T Consensus 534 ~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~~L~~L~L~~Np~~C~C~~~~~ 588 (635)
T 4g8a_A 534 D-TFPYKCLNSLQVLDYSLNHIMTSKKQELQH-FPSSLAFLNLTQNDFACTCEHQSF 588 (635)
T ss_dssp C-CGGGTTCTTCCEEECTTSCCCBCCSSCTTC-CCTTCCEEECTTCCBCCSGGGHHH
T ss_pred C-hhHHhCCCCCCEEECCCCcCCCCCHHHHHh-hhCcCCEEEeeCCCCcccCCcHHH
Confidence 1 111236899999999999976543333333 4 6799999999976555444333
No 50
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=1.8e-16 Score=146.96 Aligned_cols=279 Identities=8% Similarity=0.018 Sum_probs=194.6
Q ss_pred EEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHH---HHHHHhhCC-CCcEEEccCcccchhhhHHHHhhhccccc
Q psy5339 174 LDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRG---VQCIAYYCR-GLQQLNIQDCQISVEGYRAVKKYCKRCCI 249 (479)
Q Consensus 174 L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~~~~~ 249 (479)
+.++.+.++.. +..+....++|+.|+++++ .++... +...+..++ +|++|++++|.+.+.+...+.......
T Consensus 3 ~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~-- 78 (362)
T 3goz_A 3 YKLTLHPGSNP-VEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI-- 78 (362)
T ss_dssp EECCCCTTCCH-HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS--
T ss_pred cccccccchHH-HHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc--
Confidence 56777777754 3344454566999999998 455433 334556777 899999999999988888777654321
Q ss_pred cccccccCCcccceeEEecCCCCCCChhhHH---HHHhcC-CCccEEEeccCCccCcchhcccccc----CCCCcEEecc
Q psy5339 250 QISCLTASPTQLLLQFLDLTDCSNVDDQGLS---LIVSNC-PQLIYLYLRRCVKLTDIGIKYVPSF----CSQLKELSVS 321 (479)
Q Consensus 250 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~ 321 (479)
.++|++|+++++ .+.+.... ..+..+ ++|+.|++++ +.+++.+...+... .++|++|+++
T Consensus 79 ----------~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 79 ----------PANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGW-NDFSSKSSSEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp ----------CTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCS-SCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred ----------CCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcC-CcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence 135999999996 45544433 334455 8999999999 57888776655432 3699999999
Q ss_pred CCCCCCcHHHHHHH---HcC-CCccEEeccccCCCChhHHHHH---HHhC-CCccEEeccCCCCccHHHH---HHHHHh-
Q psy5339 322 DCTQVTDFGLYELA---KLG-ATLRYLSVAKCDQVSDAGLKVI---ARRC-YKLRYLNARGCEAVSDDAI---TVLARS- 389 (479)
Q Consensus 322 ~~~~~~~~~~~~l~---~~~-~~L~~L~l~~~~~l~~~~~~~~---~~~~-~~L~~L~l~~~~~~~~~~~---~~l~~~- 389 (479)
+| .+++.+...+. ... ++|++|++++ +.+++.+...+ ...+ ++|++|++++|. +++.+. ......
T Consensus 147 ~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~ 223 (362)
T 3goz_A 147 GN-DLGIKSSDELIQILAAIPANVNSLNLRG-NNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSI 223 (362)
T ss_dssp TS-CGGGSCHHHHHHHHHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHS
T ss_pred CC-cCCHHHHHHHHHHHhcCCccccEeeecC-CCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcC
Confidence 95 77765544433 333 4999999999 46665554433 3345 599999999975 555332 222233
Q ss_pred CCCCcEEEecCCCCCHHHHHHHH---hhCCCCcEEeccCCc--ccchhhHHHHHH---cCccccEEEecccccChHHHHH
Q psy5339 390 CTRLRALDIGKCDVSDAGLRALA---ESCPNIKKLSLRQCD--LVTDRGVQCIAY---YCRGLQQLNIQDCQISVEGYRA 461 (479)
Q Consensus 390 ~~~L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~--~l~~~~~~~~~~---~~~~L~~L~l~~~~i~~~~~~~ 461 (479)
.++|++|++++|.+++.+...+. ..+++|+.|++++|. .++..+...+.. .+++|+.|++++|++.+.....
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHH
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHH
Confidence 56999999999999886554444 457899999999994 255555555543 4567899999999998876666
Q ss_pred HHHhhhhcce
Q psy5339 462 VKKYCKRCII 471 (479)
Q Consensus 462 l~~~~~~~~i 471 (479)
+....+++..
T Consensus 304 ~~~~l~~~~~ 313 (362)
T 3goz_A 304 ISNLIRELSG 313 (362)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHCCC
Confidence 6555555443
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.72 E-value=8.5e-20 Score=176.28 Aligned_cols=181 Identities=18% Similarity=0.180 Sum_probs=84.3
Q ss_pred ceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCc
Q psy5339 262 LLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATL 341 (479)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 341 (479)
+|++|+++++ .+...... .+..+++|+.|++++ +.+.......+. .+++|+.|++++|..+..... .. ....+|
T Consensus 153 ~L~~L~l~~n-~l~~~~~~-~l~~l~~L~~L~l~~-n~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~-~~-~~~~~L 226 (477)
T 2id5_A 153 SLEQLTLEKC-NLTSIPTE-ALSHLHGLIVLRLRH-LNINAIRDYSFK-RLYRLKVLEISHWPYLDTMTP-NC-LYGLNL 226 (477)
T ss_dssp TCCEEEEESC-CCSSCCHH-HHTTCTTCCEEEEES-CCCCEECTTCSC-SCTTCCEEEEECCTTCCEECT-TT-TTTCCC
T ss_pred CCCEEECCCC-cCcccChh-HhcccCCCcEEeCCC-CcCcEeChhhcc-cCcccceeeCCCCccccccCc-cc-ccCccc
Confidence 4555555553 22222211 224566666666666 344443333332 235666666666433322110 01 112256
Q ss_pred cEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEE
Q psy5339 342 RYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKL 421 (479)
Q Consensus 342 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L 421 (479)
++|++++ +.++......+ ..+++|+.|++++|. ++.... .....+++|++|++++|.+++.....+. .+++|+.|
T Consensus 227 ~~L~l~~-n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L 301 (477)
T 2id5_A 227 TSLSITH-CNLTAVPYLAV-RHLVYLRFLNLSYNP-ISTIEG-SMLHELLRLQEIQLVGGQLAVVEPYAFR-GLNYLRVL 301 (477)
T ss_dssp SEEEEES-SCCCSCCHHHH-TTCTTCCEEECCSSC-CCEECT-TSCTTCTTCCEEECCSSCCSEECTTTBT-TCTTCCEE
T ss_pred cEEECcC-CcccccCHHHh-cCccccCeeECCCCc-CCccCh-hhccccccCCEEECCCCccceECHHHhc-CcccCCEE
Confidence 6666665 33443322222 345666666666643 221110 0112456666666666665543222222 36666677
Q ss_pred eccCCcccchhhHHHHHHcCccccEEEecccccC
Q psy5339 422 SLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 422 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 455 (479)
++++| .++..... .+..+++|+.|++++|++.
T Consensus 302 ~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 302 NVSGN-QLTTLEES-VFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ECCSS-CCSCCCGG-GBSCGGGCCEEECCSSCEE
T ss_pred ECCCC-cCceeCHh-HcCCCcccCEEEccCCCcc
Confidence 77666 34432211 1234566666776666643
No 52
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.71 E-value=4.7e-19 Score=171.08 Aligned_cols=300 Identities=19% Similarity=0.113 Sum_probs=133.1
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.+++||+++|.+..+. ...+..+++|++|++++| .+.... +..+.++++|++|++++ +.++..... ....+++|+
T Consensus 33 ~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~~~l~~L~ 107 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLN-QDEFASFPHLEELELNEN-IVSAVE-PGAFNNLFNLRTLGLRS-NRLKLIPLG-VFTGLSNLT 107 (477)
T ss_dssp TCSEEECCSSCCCEEC-TTTTTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCS-SCCCSCCTT-SSTTCTTCC
T ss_pred CCcEEECCCCccceEC-HhHccCCCCCCEEECCCC-ccCEeC-hhhhhCCccCCEEECCC-CcCCccCcc-cccCCCCCC
Confidence 4666677666544332 223566666777777665 343321 22345666667777666 345432211 123356666
Q ss_pred EEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceE
Q psy5339 95 ELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRAL 174 (479)
Q Consensus 95 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 174 (479)
+|+++++ .++... ......+++|++|+++++ .+..... .....+ ++|++|
T Consensus 108 ~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l--------------------------~~L~~L 157 (477)
T 2id5_A 108 KLDISEN-KIVILL-DYMFQDLYNLKSLEVGDN-DLVYISH-RAFSGL--------------------------NSLEQL 157 (477)
T ss_dssp EEECTTS-CCCEEC-TTTTTTCTTCCEEEECCT-TCCEECT-TSSTTC--------------------------TTCCEE
T ss_pred EEECCCC-ccccCC-hhHccccccCCEEECCCC-ccceeCh-hhccCC--------------------------CCCCEE
Confidence 6666653 333211 111123345555555442 1111000 001233 455555
Q ss_pred EcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhcccccccccc
Q psy5339 175 DIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCL 254 (479)
Q Consensus 175 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (479)
++++|.++......+ ..+++|+.|+++++. +... ....+..+++|+.|++++|........
T Consensus 158 ~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~-i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~---------------- 218 (477)
T 2id5_A 158 TLEKCNLTSIPTEAL-SHLHGLIVLRLRHLN-INAI-RDYSFKRLYRLKVLEISHWPYLDTMTP---------------- 218 (477)
T ss_dssp EEESCCCSSCCHHHH-TTCTTCCEEEEESCC-CCEE-CTTCSCSCTTCCEEEEECCTTCCEECT----------------
T ss_pred ECCCCcCcccChhHh-cccCCCcEEeCCCCc-CcEe-ChhhcccCcccceeeCCCCccccccCc----------------
Confidence 555554433211111 234555555555442 2111 011123455566666665542111000
Q ss_pred ccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHH
Q psy5339 255 TASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYEL 334 (479)
Q Consensus 255 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 334 (479)
......+|++|+++++ .+...... .+..+++|+.|++++ +.+.......+. .+++|+.|++++| .++......
T Consensus 219 -~~~~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~-n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~- 291 (477)
T 2id5_A 219 -NCLYGLNLTSLSITHC-NLTAVPYL-AVRHLVYLRFLNLSY-NPISTIEGSMLH-ELLRLQEIQLVGG-QLAVVEPYA- 291 (477)
T ss_dssp -TTTTTCCCSEEEEESS-CCCSCCHH-HHTTCTTCCEEECCS-SCCCEECTTSCT-TCTTCCEEECCSS-CCSEECTTT-
T ss_pred -ccccCccccEEECcCC-cccccCHH-HhcCccccCeeECCC-CcCCccChhhcc-ccccCCEEECCCC-ccceECHHH-
Confidence 0011124666666653 33322222 224566666666666 445544433332 2366666666663 444321111
Q ss_pred HHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCC
Q psy5339 335 AKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEA 377 (479)
Q Consensus 335 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 377 (479)
...+++|+.|++++ +.++...... ...+++|+.|++++|+.
T Consensus 292 ~~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 292 FRGLNYLRVLNVSG-NQLTTLEESV-FHSVGNLETLILDSNPL 332 (477)
T ss_dssp BTTCTTCCEEECCS-SCCSCCCGGG-BSCGGGCCEEECCSSCE
T ss_pred hcCcccCCEEECCC-CcCceeCHhH-cCCCcccCEEEccCCCc
Confidence 12345666666666 3333322111 12346667777766543
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=2.6e-17 Score=149.53 Aligned_cols=58 Identities=9% Similarity=0.054 Sum_probs=23.8
Q ss_pred CCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEec
Q psy5339 390 CTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQ 450 (479)
Q Consensus 390 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 450 (479)
+++|++|++++|.++. +......+++|+.|++++|+ ++..........+++|+.|++.
T Consensus 213 l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 213 AAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHH
T ss_pred cCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCC-ccCcCHHHHHhccccceEEECC
Confidence 4455555555554442 11111224455555555552 3322233333344444444444
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.64 E-value=3.5e-17 Score=149.91 Aligned_cols=197 Identities=16% Similarity=0.116 Sum_probs=108.1
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.++.++++++....++.. + .++|++|+++++ .+.... ...+..+++|++|+++++ .++......+ ..+++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~--~--~~~l~~L~L~~n-~i~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD--L--PPDTALLDLQNN-KITEIK-DGDFKNLKNLHTLILINN-KISKISPGAF-APLVKLE 103 (330)
T ss_dssp ETTEEECTTSCCCSCCCS--C--CTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSS-CCCCBCTTTT-TTCTTCC
T ss_pred CCeEEEecCCCccccCcc--C--CCCCeEEECCCC-cCCEeC-hhhhccCCCCCEEECCCC-cCCeeCHHHh-cCCCCCC
Confidence 578888887754443321 2 267888999887 454322 223577889999999884 6665322233 4578899
Q ss_pred EEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceE
Q psy5339 95 ELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRAL 174 (479)
Q Consensus 95 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 174 (479)
+|+++++ .++.... ..+++|++|+++++ .+.... ......+++|+.|+++++..............+++|++|
T Consensus 104 ~L~Ls~n-~l~~l~~----~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 104 RLYLSKN-QLKELPE----KMPKTLQELRVHEN-EITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp EEECCSS-CCSBCCS----SCCTTCCEEECCSS-CCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred EEECCCC-cCCccCh----hhcccccEEECCCC-cccccC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 9999874 4443210 12367888887764 233221 222345677777777765432111111222345677777
Q ss_pred EcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCccc
Q psy5339 175 DIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQI 232 (479)
Q Consensus 175 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 232 (479)
+++++.++.... ...++|+.|+++++ .+.... ...+..+++|+.|++++|.+
T Consensus 177 ~l~~n~l~~l~~----~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 177 RIADTNITTIPQ----GLPPSLTELHLDGN-KITKVD-AASLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp ECCSSCCCSCCS----SCCTTCSEEECTTS-CCCEEC-TGGGTTCTTCCEEECCSSCC
T ss_pred ECCCCccccCCc----cccccCCEEECCCC-cCCccC-HHHhcCCCCCCEEECCCCcC
Confidence 777766542100 11256666666655 232211 11233556666666666653
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=3.2e-17 Score=148.58 Aligned_cols=157 Identities=18% Similarity=0.125 Sum_probs=85.0
Q ss_pred CccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHH-H-HHHH-HHcCCCCcEEecCCCCCcCh--HHHHHHHh
Q psy5339 143 YKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDA-G-LRAL-AESCPNIKKLSLRQCDLVTD--RGVQCIAY 217 (479)
Q Consensus 143 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~-~~~l-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~ 217 (479)
++|++|+++++..... .. ..+..+++|++|++++|++... . ...+ ...+++|+.|+++++ .++. .....++.
T Consensus 149 ~~L~~L~L~~N~l~~~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~ 225 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNF-SC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAA 225 (312)
T ss_dssp TTCCEEEEESCSCCCC-CT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHH
T ss_pred CCCcEEEeeCCCCccc-hH-HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHh
Confidence 5566666655432111 10 1112346777777777765542 1 1121 144677777777776 3432 22334445
Q ss_pred hCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccC
Q psy5339 218 YCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRC 297 (479)
Q Consensus 218 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (479)
.+++|+.|++++|.+.... ........++|++|+++++ .+.. +... -.++|+.|++++
T Consensus 226 ~l~~L~~L~Ls~N~l~~~~----------------~~~~~~~l~~L~~L~Ls~N-~l~~--ip~~--~~~~L~~L~Ls~- 283 (312)
T 1wwl_A 226 ARVQLQGLDLSHNSLRDAA----------------GAPSCDWPSQLNSLNLSFT-GLKQ--VPKG--LPAKLSVLDLSY- 283 (312)
T ss_dssp TTCCCSEEECTTSCCCSSC----------------CCSCCCCCTTCCEEECTTS-CCSS--CCSS--CCSEEEEEECCS-
T ss_pred cCCCCCEEECCCCcCCccc----------------chhhhhhcCCCCEEECCCC-ccCh--hhhh--ccCCceEEECCC-
Confidence 6677888888777754321 0111122356888888774 3331 1111 116888888888
Q ss_pred CccCcchhccccccCCCCcEEeccCCCCCCc
Q psy5339 298 VKLTDIGIKYVPSFCSQLKELSVSDCTQVTD 328 (479)
Q Consensus 298 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 328 (479)
+.++..+ .+ ..+++|+.|+++++ .+++
T Consensus 284 N~l~~~p--~~-~~l~~L~~L~L~~N-~l~~ 310 (312)
T 1wwl_A 284 NRLDRNP--SP-DELPQVGNLSLKGN-PFLD 310 (312)
T ss_dssp SCCCSCC--CT-TTSCEEEEEECTTC-TTTC
T ss_pred CCCCCCh--hH-hhCCCCCEEeccCC-CCCC
Confidence 5676652 22 34588888888884 5543
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.62 E-value=1.5e-17 Score=152.33 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=70.7
Q ss_pred cCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhC
Q psy5339 285 NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRC 364 (479)
Q Consensus 285 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 364 (479)
.+++|+.|++++ +.+...+... .++|++|++++| .++...... ...+++|++|++++ +.++...... ...+
T Consensus 169 ~l~~L~~L~l~~-n~l~~l~~~~----~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~Ls~-n~l~~~~~~~-~~~l 239 (330)
T 1xku_A 169 GMKKLSYIRIAD-TNITTIPQGL----PPSLTELHLDGN-KITKVDAAS-LKGLNNLAKLGLSF-NSISAVDNGS-LANT 239 (330)
T ss_dssp GCTTCCEEECCS-SCCCSCCSSC----CTTCSEEECTTS-CCCEECTGG-GTTCTTCCEEECCS-SCCCEECTTT-GGGS
T ss_pred CCCCcCEEECCC-CccccCCccc----cccCCEEECCCC-cCCccCHHH-hcCCCCCCEEECCC-CcCceeChhh-ccCC
Confidence 345555555555 3333221111 145555555553 333321111 12234555555555 2333221111 1245
Q ss_pred CCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHh-----hCCCCcEEeccCCcccchhhH-HHHH
Q psy5339 365 YKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAE-----SCPNIKKLSLRQCDLVTDRGV-QCIA 438 (479)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~-----~~~~L~~L~l~~~~~l~~~~~-~~~~ 438 (479)
++|++|++++|. ++. +......+++|++|++++|++++.....+.. ..+.|+.|++.+|+. ....+ ....
T Consensus 240 ~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~-~~~~i~~~~f 315 (330)
T 1xku_A 240 PHLRELHLNNNK-LVK--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV-QYWEIQPSTF 315 (330)
T ss_dssp TTCCEEECCSSC-CSS--CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS-CGGGSCGGGG
T ss_pred CCCCEEECCCCc-Ccc--CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc-cccccCcccc
Confidence 667777776653 221 1111234677777777777765433222211 135677777777753 22111 1123
Q ss_pred HcCccccEEEecccc
Q psy5339 439 YYCRGLQQLNIQDCQ 453 (479)
Q Consensus 439 ~~~~~L~~L~l~~~~ 453 (479)
..+++++.+++++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 345677777777763
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.62 E-value=2e-16 Score=143.75 Aligned_cols=233 Identities=13% Similarity=0.145 Sum_probs=127.8
Q ss_pred HHHHHhcCccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHH
Q psy5339 162 TVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVK 241 (479)
Q Consensus 162 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 241 (479)
..+...+++|++|+++++.++......+ ..+++|+.|+++++. +.... . +..+++|+.|++++|.+...
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~Ls~n~l~~l------ 95 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNNYVQEL------ 95 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHH-TTCTTCCEEECTTSC-CEEEE--E-ETTCTTCCEEECCSSEEEEE------
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHh-hCCCcCCEEECCCCc-CCcch--h-hhhcCCCCEEECcCCccccc------
Confidence 3444455677777777776554322222 336677777776653 32111 1 34566666666666653210
Q ss_pred hhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEecc
Q psy5339 242 KYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVS 321 (479)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~ 321 (479)
...++|+.|++++ +.+....... +++|+.|+++
T Consensus 96 ------------------------------------------~~~~~L~~L~l~~-n~l~~~~~~~----~~~L~~L~l~ 128 (317)
T 3o53_A 96 ------------------------------------------LVGPSIETLHAAN-NNISRVSCSR----GQGKKNIYLA 128 (317)
T ss_dssp ------------------------------------------EECTTCCEEECCS-SCCSEEEECC----CSSCEEEECC
T ss_pred ------------------------------------------cCCCCcCEEECCC-CccCCcCccc----cCCCCEEECC
Confidence 0124555555555 3343332221 2455555555
Q ss_pred CCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCC
Q psy5339 322 DCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKC 401 (479)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 401 (479)
+| .++......+ ..+++|++|++++ +.++......+...+++|++|++++|. ++.. ... ..+++|++|++++|
T Consensus 129 ~N-~l~~~~~~~~-~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~--~~~-~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 129 NN-KITMLRDLDE-GCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQ-VVFAKLKTLDLSSN 201 (317)
T ss_dssp SS-CCCSGGGBCT-GGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECC-CCCTTCCEEECCSS
T ss_pred CC-CCCCccchhh-hccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCCc-Cccc--ccc-cccccCCEEECCCC
Confidence 53 3433211111 1234566666655 344433333333355677777777754 2211 111 13789999999999
Q ss_pred CCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccChHHHHHHHH
Q psy5339 402 DVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKK 464 (479)
Q Consensus 402 ~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~ 464 (479)
.++..... ...+++|++|++++| .++.. ......+++|+.|++++|+++.........
T Consensus 202 ~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l--~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 202 KLAFMGPE--FQSAAGVTWISLRNN-KLVLI--EKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp CCCEECGG--GGGGTTCSEEECTTS-CCCEE--CTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred cCCcchhh--hcccCcccEEECcCC-cccch--hhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 98753222 335899999999999 56642 222356789999999999998444433333
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=1.6e-16 Score=146.83 Aligned_cols=257 Identities=11% Similarity=0.053 Sum_probs=120.7
Q ss_pred CccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCC
Q psy5339 143 YKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGL 222 (479)
Q Consensus 143 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 222 (479)
++|++|+++++... ... ...+..+++|++|++++|.++...... ...+++|+.|+++++ .++.. ....+..+++|
T Consensus 52 ~~L~~L~l~~n~i~-~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNNRIT-YIS-NSDLQRCVNLQALVLTSNGINTIEEDS-FSSLGSLEHLDLSYN-YLSNL-SSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTTSCCC-EEC-TTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSS-CCSSC-CHHHHTTCTTC
T ss_pred ccCcEEECCCCcCc-ccC-HHHhccCCCCCEEECCCCccCccCHhh-cCCCCCCCEEECCCC-cCCcC-CHhHhCCCccC
Confidence 46777777765422 111 111234567777777777655321111 223566777777665 33321 12224456677
Q ss_pred cEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCc
Q psy5339 223 QQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTD 302 (479)
Q Consensus 223 ~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 302 (479)
++|++++|.+... .........++|++|+++++..+...... .+..+++|+.|++++ +.+..
T Consensus 127 ~~L~L~~n~l~~l----------------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~-n~l~~ 188 (353)
T 2z80_A 127 TFLNLLGNPYKTL----------------GETSLFSHLTKLQILRVGNMDTFTKIQRK-DFAGLTFLEELEIDA-SDLQS 188 (353)
T ss_dssp SEEECTTCCCSSS----------------CSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEE-TTCCE
T ss_pred CEEECCCCCCccc----------------CchhhhccCCCCcEEECCCCccccccCHH-HccCCCCCCEEECCC-CCcCc
Confidence 7777776653310 00001122334555555443222211111 112344444444444 23333
Q ss_pred chhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHH-
Q psy5339 303 IGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDD- 381 (479)
Q Consensus 303 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~- 381 (479)
.....+. ..++|++|++++ +.++... ......+++|+.|++++|. ++..
T Consensus 189 ~~~~~l~---------------------------~l~~L~~L~l~~-n~l~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~ 238 (353)
T 2z80_A 189 YEPKSLK---------------------------SIQNVSHLILHM-KQHILLL-EIFVDVTSSVECLELRDTD-LDTFH 238 (353)
T ss_dssp ECTTTTT---------------------------TCSEEEEEEEEC-SCSTTHH-HHHHHHTTTEEEEEEESCB-CTTCC
T ss_pred cCHHHHh---------------------------ccccCCeecCCC-Cccccch-hhhhhhcccccEEECCCCc-ccccc
Confidence 2222221 233455555544 2232221 1122234555555555542 2210
Q ss_pred --HHHHHHHhCCCCcEEEecCCCCCHHHHHHHH---hhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccC
Q psy5339 382 --AITVLARSCTRLRALDIGKCDVSDAGLRALA---ESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 382 --~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 455 (479)
.+.. ....+.++.++++++.+++..+..+. ..+++|++|++++| .++.... .++..+++|+.|++++|+++
T Consensus 239 ~~~l~~-~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~-~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 239 FSELST-GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD-GIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred cccccc-ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH-HHHhcCCCCCEEEeeCCCcc
Confidence 0111 12456777788888877776555443 34778888888887 4553221 12245678888888888755
No 59
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.60 E-value=1.3e-14 Score=133.82 Aligned_cols=194 Identities=15% Similarity=0.170 Sum_probs=138.8
Q ss_pred cceeEEecCCCCCCChhhHHHHHh----cCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHH
Q psy5339 261 LLLQFLDLTDCSNVDDQGLSLIVS----NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAK 336 (479)
Q Consensus 261 ~~L~~L~l~~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 336 (479)
+.|++|+++++ .+.......+.. ..++|+.|++++ +.+++.++..+...+++|++|++++| .+++.+...+..
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLAS-CQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTT-CCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecC-CCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHH
Confidence 45889999985 566655554433 236899999998 57888877777776788999999995 888877766653
Q ss_pred ----cCCCccEEeccccCCCChhHHHHHH---HhCCCccEEeccCCCCccHHHHHHHH---HhCCCCcEEEecCCCCCHH
Q psy5339 337 ----LGATLRYLSVAKCDQVSDAGLKVIA---RRCYKLRYLNARGCEAVSDDAITVLA---RSCTRLRALDIGKCDVSDA 406 (479)
Q Consensus 337 ----~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~i~~~ 406 (479)
..++|++|++++ +.+++.+...++ ..+++|++|++++|. +++.++..+. ..+++|++|+|++|.+++.
T Consensus 149 ~L~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 149 LLLHDQCQITTLRLSN-NPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHSTTCCCCEEECCS-SCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHhcCCccceeeCCC-CCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 346899999998 468777766554 457889999999865 7776655443 4567899999999999988
Q ss_pred HHHHHHh---hCCCCcEEeccCCcccchhhHHHHHHcC-cc---ccEEE--ecccccChHHHH
Q psy5339 407 GLRALAE---SCPNIKKLSLRQCDLVTDRGVQCIAYYC-RG---LQQLN--IQDCQISVEGYR 460 (479)
Q Consensus 407 ~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~---L~~L~--l~~~~i~~~~~~ 460 (479)
+...++. .+++|++|++++| .+++.+...+.... +. |+.+. +..+.++++...
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~ 288 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSV 288 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC----CHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHH
Confidence 8777765 4688999999999 58888877665421 12 67777 677777665433
No 60
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.60 E-value=3.1e-17 Score=150.28 Aligned_cols=196 Identities=15% Similarity=0.112 Sum_probs=102.4
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.++.++++++.+..++.. + .++|++|++++| .+.... +..+..+++|++|+++++ .++......+ ..+++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~--~--~~~l~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKE--I--SPDTTLLDLQNN-DISELR-KDDFKGLQHLYALVLVNN-KISKIHEKAF-SPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCSSCCSC--C--CTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSS-CCCEECGGGS-TTCTTCC
T ss_pred cCCEEECCCCCccccCCC--C--CCCCeEEECCCC-cCCccC-HhHhhCCCCCcEEECCCC-ccCccCHhHh-hCcCCCC
Confidence 578888888865444321 2 368899999987 454322 233577889999999884 6665433333 4578899
Q ss_pred EEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceE
Q psy5339 95 ELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRAL 174 (479)
Q Consensus 95 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 174 (479)
+|+++++ .++.... ..+++|++|+++++. +.... ......+++|++|+++++..............+ +|++|
T Consensus 106 ~L~L~~n-~l~~l~~----~~~~~L~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 106 KLYISKN-HLVEIPP----NLPSSLVELRIHDNR-IRKVP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp EEECCSS-CCCSCCS----SCCTTCCEEECCSSC-CCCCC-SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred EEECCCC-cCCccCc----cccccCCEEECCCCc-cCccC-HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 9999874 4442110 112678888877642 22111 111235567777777665322110111111111 56666
Q ss_pred EcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCccc
Q psy5339 175 DIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQI 232 (479)
Q Consensus 175 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 232 (479)
+++++.++.... ...++|+.|+++++ .+..... ..+..+++|+.|++++|.+
T Consensus 178 ~l~~n~l~~l~~----~~~~~L~~L~l~~n-~i~~~~~-~~l~~l~~L~~L~L~~N~l 229 (332)
T 2ft3_A 178 RISEAKLTGIPK----DLPETLNELHLDHN-KIQAIEL-EDLLRYSKLYRLGLGHNQI 229 (332)
T ss_dssp BCCSSBCSSCCS----SSCSSCSCCBCCSS-CCCCCCT-TSSTTCTTCSCCBCCSSCC
T ss_pred ECcCCCCCccCc----cccCCCCEEECCCC-cCCccCH-HHhcCCCCCCEEECCCCcC
Confidence 666665443100 01245566666554 2221111 1123445555555555553
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=4.3e-17 Score=147.74 Aligned_cols=158 Identities=15% Similarity=0.087 Sum_probs=107.8
Q ss_pred CCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCc-HHHHHHH--HcCCCccEEeccccCCCChh--HHHHHH
Q psy5339 287 PQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTD-FGLYELA--KLGATLRYLSVAKCDQVSDA--GLKVIA 361 (479)
Q Consensus 287 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~--~~~~~L~~L~l~~~~~l~~~--~~~~~~ 361 (479)
++|++|++++ +.+.......+.. +++|++|++++| .+.. .++.... ..+++|++|++++ +.++.. ....+.
T Consensus 149 ~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 149 PGLKVLSIAQ-AHSLNFSCEQVRV-FPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRN-AGMETPSGVCSALA 224 (312)
T ss_dssp TTCCEEEEES-CSCCCCCTTTCCC-CSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTT-SCCCCHHHHHHHHH
T ss_pred CCCcEEEeeC-CCCccchHHHhcc-CCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCC-CcCcchHHHHHHHH
Confidence 8999999998 5776665555543 489999999995 4443 2222222 5568999999998 456632 233444
Q ss_pred HhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcC
Q psy5339 362 RRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC 441 (479)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 441 (479)
..+++|++|++++|. ++..........+++|++|++++|.++. +..- ..++|++|++++| .++... . ...+
T Consensus 225 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip~~--~~~~L~~L~Ls~N-~l~~~p--~-~~~l 295 (312)
T 1wwl_A 225 AARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKG--LPAKLSVLDLSYN-RLDRNP--S-PDEL 295 (312)
T ss_dssp HTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCCSS--CCSS--CCSEEEEEECCSS-CCCSCC--C-TTTS
T ss_pred hcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCccCh--hhhh--ccCCceEEECCCC-CCCCCh--h-HhhC
Confidence 577999999999875 3321100111246899999999999872 1111 1268999999999 566542 2 4578
Q ss_pred ccccEEEecccccChH
Q psy5339 442 RGLQQLNIQDCQISVE 457 (479)
Q Consensus 442 ~~L~~L~l~~~~i~~~ 457 (479)
++|+.|++++|+++.+
T Consensus 296 ~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 296 PQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CEEEEEECTTCTTTCC
T ss_pred CCCCEEeccCCCCCCC
Confidence 9999999999998764
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.5e-15 Score=140.40 Aligned_cols=280 Identities=15% Similarity=0.135 Sum_probs=168.1
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.....|.+++.+..++.. + .++|++|+++++ .++... ...+..+++|++|+++++ .++......+ ..+++|+
T Consensus 32 ~~~~c~~~~~~l~~iP~~--~--~~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~ 103 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSG--L--TEAVKSLDLSNN-RITYIS-NSDLQRCVNLQALVLTSN-GINTIEEDSF-SSLGSLE 103 (353)
T ss_dssp TTSEEECCSTTCSSCCTT--C--CTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTS-CCCEECTTTT-TTCTTCC
T ss_pred CCeEeeCCCCCccccccc--c--cccCcEEECCCC-cCcccC-HHHhccCCCCCEEECCCC-ccCccCHhhc-CCCCCCC
Confidence 334566666644443321 1 257888888887 454422 223567888888888884 6665322223 4468888
Q ss_pred EEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceE
Q psy5339 95 ELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRAL 174 (479)
Q Consensus 95 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 174 (479)
+|+++++ .++.... .....+++|++|+++++ .+...........+++|++|+++++......... .+..+++|++|
T Consensus 104 ~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L 179 (353)
T 2z80_A 104 HLDLSYN-YLSNLSS-SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-DFAGLTFLEEL 179 (353)
T ss_dssp EEECCSS-CCSSCCH-HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEE
T ss_pred EEECCCC-cCCcCCH-hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHH-HccCCCCCCEE
Confidence 8888874 5554322 22355688888888874 2321111012346788999999876433221111 12345899999
Q ss_pred EcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhcccccccccc
Q psy5339 175 DIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCL 254 (479)
Q Consensus 175 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (479)
++++|.+.......+ ..+++|++|+++++. +.. ....+...+++|+.|++++|.+.......+.
T Consensus 180 ~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~------------- 243 (353)
T 2z80_A 180 EIDASDLQSYEPKSL-KSIQNVSHLILHMKQ-HIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELS------------- 243 (353)
T ss_dssp EEEETTCCEECTTTT-TTCSEEEEEEEECSC-STT-HHHHHHHHTTTEEEEEEESCBCTTCCCC----------------
T ss_pred ECCCCCcCccCHHHH-hccccCCeecCCCCc-ccc-chhhhhhhcccccEEECCCCccccccccccc-------------
Confidence 999988654322222 347889999999874 432 2334455689999999999987653322221
Q ss_pred ccCCcccceeEEecCCCCCCChhhHH---HHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCC
Q psy5339 255 TASPTQLLLQFLDLTDCSNVDDQGLS---LIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQV 326 (479)
Q Consensus 255 ~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 326 (479)
.......++.+++.++ .+.+..+. ..+..+++|+.|++++ +.++..+...+ ..+++|++|++++|+-.
T Consensus 244 -~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~~~~-~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 244 -TGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSR-NQLKSVPDGIF-DRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ----CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCS-SCCCCCCTTTT-TTCTTCCEEECCSSCBC
T ss_pred -cccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCC-CCCCccCHHHH-hcCCCCCEEEeeCCCcc
Confidence 1122345777777774 45554333 3356789999999998 57775443333 34589999999986433
No 63
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.55 E-value=1.7e-13 Score=126.46 Aligned_cols=176 Identities=19% Similarity=0.244 Sum_probs=143.4
Q ss_pred CCCccEEEeccCCccCcchhcccccc----CCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHH
Q psy5339 286 CPQLIYLYLRRCVKLTDIGIKYVPSF----CSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIA 361 (479)
Q Consensus 286 ~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~ 361 (479)
.+.|+.|++++ +.+++.....+... .++|+.|++++| .+++.++..+....++|++|++++ +.+++.++..+.
T Consensus 71 ~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~-n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAG-VRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQL-NSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTT-SCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCS-SCCCHHHHHHHH
T ss_pred HhhCCEEEecC-CCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCC-CCCCHHHHHHHH
Confidence 57899999999 57887766555433 259999999995 899988888877777999999999 588888877765
Q ss_pred H----hCCCccEEeccCCCCccHHHHHHHH---HhCCCCcEEEecCCCCCHHHHHHHHh---hCCCCcEEeccCCcccch
Q psy5339 362 R----RCYKLRYLNARGCEAVSDDAITVLA---RSCTRLRALDIGKCDVSDAGLRALAE---SCPNIKKLSLRQCDLVTD 431 (479)
Q Consensus 362 ~----~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~ 431 (479)
. ..++|++|++++|. +++.+...++ ..+++|++|+|++|.+++.++..+.. ..++|++|++++| .+++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~ 225 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGD 225 (372)
T ss_dssp HHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCH
T ss_pred HHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCH
Confidence 4 35889999999974 7776655543 56899999999999999998877764 4678999999999 7888
Q ss_pred hhHHHHH---HcCccccEEEecccccChHHHHHHHHhh
Q psy5339 432 RGVQCIA---YYCRGLQQLNIQDCQISVEGYRAVKKYC 466 (479)
Q Consensus 432 ~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 466 (479)
.+...+. ..+++|++|++++|+|++.++..+....
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~ 263 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLG 263 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHh
Confidence 7766554 3568999999999999999999987743
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.55 E-value=5.5e-17 Score=146.91 Aligned_cols=14 Identities=14% Similarity=0.036 Sum_probs=6.9
Q ss_pred hCCCCcEEEccCcc
Q psy5339 218 YCRGLQQLNIQDCQ 231 (479)
Q Consensus 218 ~~~~L~~L~l~~~~ 231 (479)
.+++|+.|++++|.
T Consensus 76 ~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 76 GTTSLKYLDLSFNG 89 (306)
T ss_dssp SCSCCCEEECCSCS
T ss_pred cccccCEEECCCCc
Confidence 34455555555544
No 65
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.54 E-value=1.8e-17 Score=151.85 Aligned_cols=88 Identities=9% Similarity=0.026 Sum_probs=45.1
Q ss_pred hCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhh-----CCCCcEEeccCCcccchhhHHHH
Q psy5339 363 RCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAES-----CPNIKKLSLRQCDLVTDRGVQCI 437 (479)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~-----~~~L~~L~l~~~~~l~~~~~~~~ 437 (479)
.+++|++|++++|. ++. +......+++|++|++++|++++.....+... .++|+.|++.+|+..........
T Consensus 239 ~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~ 315 (332)
T 2ft3_A 239 FLPTLRELHLDNNK-LSR--VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315 (332)
T ss_dssp GCTTCCEEECCSSC-CCB--CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred CCCCCCEEECCCCc-Cee--cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc
Confidence 45666666666653 221 11112356777777777777665433333221 45677788887753211111122
Q ss_pred HHcCccccEEEecccc
Q psy5339 438 AYYCRGLQQLNIQDCQ 453 (479)
Q Consensus 438 ~~~~~~L~~L~l~~~~ 453 (479)
+..+++|+.+++++|+
T Consensus 316 ~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 316 FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GTTBCCSTTEEC----
T ss_pred ccccchhhhhhccccc
Confidence 3456777777777763
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.54 E-value=4.1e-14 Score=138.90 Aligned_cols=106 Identities=21% Similarity=0.210 Sum_probs=52.1
Q ss_pred CCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCC
Q psy5339 286 CPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCY 365 (479)
Q Consensus 286 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 365 (479)
.++|+.|++++ +.++..+ ..+++|+.|++++| .++... ..+++|+.|++++ +.++.... .++
T Consensus 200 ~~~L~~L~L~~-N~l~~l~-----~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~-N~L~~lp~-----~~~ 261 (622)
T 3g06_A 200 PSELYKLWAYN-NRLTSLP-----ALPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSG-NRLTSLPM-----LPS 261 (622)
T ss_dssp CTTCCEEECCS-SCCSSCC-----CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCS-SCCSCCCC-----CCT
T ss_pred cchhhEEECcC-CcccccC-----CCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCC-CCCCcCCc-----ccc
Confidence 34555555555 3333221 12255666666653 443311 2334566666665 23332111 345
Q ss_pred CccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHH
Q psy5339 366 KLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALA 412 (479)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~ 412 (479)
+|+.|++++|. ++. +......+++|+.|++++|+++......+.
T Consensus 262 ~L~~L~Ls~N~-L~~--lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 262 GLLSLSVYRNQ-LTR--LPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TCCEEECCSSC-CCS--CCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cCcEEeCCCCC-CCc--CCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 66666666653 331 222233566777777777776665544443
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.54 E-value=2.2e-14 Score=140.76 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=42.5
Q ss_pred CCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccc
Q psy5339 365 YKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGL 444 (479)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 444 (479)
++|+.|++++|. ++. +. ..+++|+.|++++|.++.. . ..+++|+.|++++| .++.. ...+..+++|
T Consensus 221 ~~L~~L~Ls~N~-L~~--lp---~~l~~L~~L~Ls~N~L~~l--p---~~~~~L~~L~Ls~N-~L~~l--p~~l~~l~~L 286 (622)
T 3g06_A 221 SGLKELIVSGNR-LTS--LP---VLPSELKELMVSGNRLTSL--P---MLPSGLLSLSVYRN-QLTRL--PESLIHLSSE 286 (622)
T ss_dssp TTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSCCSCC--C---CCCTTCCEEECCSS-CCCSC--CGGGGGSCTT
T ss_pred CCCCEEEccCCc-cCc--CC---CCCCcCcEEECCCCCCCcC--C---cccccCcEEeCCCC-CCCcC--CHHHhhcccc
Confidence 455555555542 221 11 2345666666666655421 1 13556666666666 34421 1113455666
Q ss_pred cEEEecccccChHHHHHHH
Q psy5339 445 QQLNIQDCQISVEGYRAVK 463 (479)
Q Consensus 445 ~~L~l~~~~i~~~~~~~l~ 463 (479)
+.|++++|+++......+.
T Consensus 287 ~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 287 TTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CEEECCSCCCCHHHHHHHH
T ss_pred CEEEecCCCCCCcCHHHHH
Confidence 6666666666655554443
No 68
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.53 E-value=1.5e-17 Score=150.71 Aligned_cols=177 Identities=11% Similarity=0.057 Sum_probs=96.9
Q ss_pred ceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCc
Q psy5339 262 LLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATL 341 (479)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 341 (479)
+|++|+++++ .+..... ..+..+++|++|++++ +.+.......+....++|+.|++++| .++......+. .. +|
T Consensus 126 ~L~~L~Ls~N-~l~~~~p-~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~-~l-~L 199 (313)
T 1ogq_A 126 TLVTLDFSYN-ALSGTLP-PSISSLPNLVGITFDG-NRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFA-NL-NL 199 (313)
T ss_dssp TCCEEECCSS-EEESCCC-GGGGGCTTCCEEECCS-SCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGG-GC-CC
T ss_pred CCCEEeCCCC-ccCCcCC-hHHhcCCCCCeEECcC-CcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHh-CC-cc
Confidence 4666666553 2221111 1124567777777777 45543333333333237777777774 44322111222 22 37
Q ss_pred cEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEE
Q psy5339 342 RYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKL 421 (479)
Q Consensus 342 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L 421 (479)
++|++++ +.++.... .....+++|+.|++++|..... ... ...+++|++|++++|.+++.....+. .+++|++|
T Consensus 200 ~~L~Ls~-N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~--~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L 273 (313)
T 1ogq_A 200 AFVDLSR-NMLEGDAS-VLFGSDKNTQKIHLAKNSLAFD--LGK-VGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSL 273 (313)
T ss_dssp SEEECCS-SEEEECCG-GGCCTTSCCSEEECCSSEECCB--GGG-CCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEE
T ss_pred cEEECcC-CcccCcCC-HHHhcCCCCCEEECCCCceeee--cCc-ccccCCCCEEECcCCcccCcCChHHh-cCcCCCEE
Confidence 7777776 33332211 1123567888888887643211 111 23568889999998887643333333 48889999
Q ss_pred eccCCcccchhhHHHHHHcCccccEEEecccc
Q psy5339 422 SLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQ 453 (479)
Q Consensus 422 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 453 (479)
++++| .++..... . ..+++|+.+++++|+
T Consensus 274 ~Ls~N-~l~~~ip~-~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 274 NVSFN-NLCGEIPQ-G-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCSS-EEEEECCC-S-TTGGGSCGGGTCSSS
T ss_pred ECcCC-cccccCCC-C-ccccccChHHhcCCC
Confidence 99988 44422111 1 456788888888887
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=1.1e-15 Score=146.85 Aligned_cols=237 Identities=14% Similarity=0.092 Sum_probs=129.3
Q ss_pred CccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhcccc
Q psy5339 169 TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCC 248 (479)
Q Consensus 169 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 248 (479)
++|++|++++|.++......+ ..+++|+.|+++++. ++.... +..+++|+.|++++|.+...
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N~l~~l------------- 95 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNNYVQEL------------- 95 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGG-TTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSSEEEEE-------------
T ss_pred CCccEEEeeCCcCCCCCHHHH-hCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCCcCCCC-------------
Confidence 467777777776554222222 346777777777763 322111 45677888888888774421
Q ss_pred ccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCc
Q psy5339 249 IQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTD 328 (479)
Q Consensus 249 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 328 (479)
+ ..++|++|+++++ .+..... ..+++|+.|++++ +.++......+.. +++|+.|++++| .++.
T Consensus 96 ------~---~~~~L~~L~L~~N-~l~~~~~----~~l~~L~~L~L~~-N~l~~~~~~~~~~-l~~L~~L~Ls~N-~l~~ 158 (487)
T 3oja_A 96 ------L---VGPSIETLHAANN-NISRVSC----SRGQGKKNIYLAN-NKITMLRDLDEGC-RSRVQYLDLKLN-EIDT 158 (487)
T ss_dssp ------E---ECTTCCEEECCSS-CCCCEEE----CCCSSCEEEECCS-SCCCSGGGBCGGG-GSSEEEEECTTS-CCCE
T ss_pred ------C---CCCCcCEEECcCC-cCCCCCc----cccCCCCEEECCC-CCCCCCCchhhcC-CCCCCEEECCCC-CCCC
Confidence 1 1245777777774 3332221 2467788888887 5666554444432 478888888874 6665
Q ss_pred HHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q psy5339 329 FGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGL 408 (479)
Q Consensus 329 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 408 (479)
.....+...+++|++|++++ +.++... . ...+++|+.|++++|. ++. +..-...+++|+.|++++|.++. +
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~-N~l~~~~--~-~~~l~~L~~L~Ls~N~-l~~--~~~~~~~l~~L~~L~Ls~N~l~~--l 229 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQY-NFIYDVK--G-QVVFAKLKTLDLSSNK-LAF--MGPEFQSAAGVTWISLRNNKLVL--I 229 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTT-SCCCEEE--C-CCCCTTCCEEECCSSC-CCE--ECGGGGGGTTCSEEECTTSCCCE--E
T ss_pred cChHHHhhhCCcccEEecCC-Ccccccc--c-cccCCCCCEEECCCCC-CCC--CCHhHcCCCCccEEEecCCcCcc--c
Confidence 44444444556777777777 3343321 0 0135667777776653 221 10112245666777777666553 1
Q ss_pred HHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEec
Q psy5339 409 RALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQ 450 (479)
Q Consensus 409 ~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 450 (479)
......+++|+.|++++|+ +....+......++.|+.++++
T Consensus 230 p~~l~~l~~L~~L~l~~N~-l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCCCTTCCEEECTTCC-BCHHHHHHHHTTCHHHHHHHHH
T ss_pred chhhccCCCCCEEEcCCCC-CcCcchHHHHHhCCCCcEEecc
Confidence 1112235666666666663 3433344444455555555543
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=1.1e-15 Score=138.37 Aligned_cols=161 Identities=12% Similarity=0.091 Sum_probs=99.7
Q ss_pred cCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCc-HHHHH--HHHcCCCccEEeccccCCCChh--HHHH
Q psy5339 285 NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTD-FGLYE--LAKLGATLRYLSVAKCDQVSDA--GLKV 359 (479)
Q Consensus 285 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~--l~~~~~~L~~L~l~~~~~l~~~--~~~~ 359 (479)
.+++|+.|++++ +.+.......+. .+++|++|++++| .+.. .++.. .....++|++|++++ +.++.. ....
T Consensus 143 ~~~~L~~L~Ls~-n~l~~~~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~ 218 (310)
T 4glp_A 143 LKPGLKVLSIAQ-AHSPAFSCEQVR-AFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRN-TGMETPTGVCAA 218 (310)
T ss_dssp BCSCCCEEEEEC-CSSCCCCTTSCC-CCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCS-SCCCCHHHHHHH
T ss_pred hccCCCEEEeeC-CCcchhhHHHhc-cCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCC-CCCCchHHHHHH
Confidence 577888888877 456554444443 3478888888885 4432 22211 113456788888887 455422 2222
Q ss_pred HHHhCCCccEEeccCCCCccHHHHHHHH--HhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHH
Q psy5339 360 IARRCYKLRYLNARGCEAVSDDAITVLA--RSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCI 437 (479)
Q Consensus 360 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~--~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~ 437 (479)
+...+++|++|++++|. ++......+. ..+++|++|++++|.++. +.. ..+++|++|++++| .++....
T Consensus 219 l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~--~~~~~L~~L~Ls~N-~l~~~~~--- 289 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPK--GLPAKLRVLDLSSN-RLNRAPQ--- 289 (310)
T ss_dssp HHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCS--CCCSCCSCEECCSC-CCCSCCC---
T ss_pred HHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCCc--hhh--hhcCCCCEEECCCC-cCCCCch---
Confidence 34567888888888864 3321000011 113799999999999773 111 12478999999999 5664221
Q ss_pred HHcCccccEEEecccccChHH
Q psy5339 438 AYYCRGLQQLNIQDCQISVEG 458 (479)
Q Consensus 438 ~~~~~~L~~L~l~~~~i~~~~ 458 (479)
...+++|+.|++++|++++++
T Consensus 290 ~~~l~~L~~L~L~~N~l~~~g 310 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFLVPG 310 (310)
T ss_dssp TTSCCCCSCEECSSTTTSCCC
T ss_pred hhhCCCccEEECcCCCCCCCC
Confidence 356799999999999988653
No 71
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=1.1e-13 Score=124.91 Aligned_cols=193 Identities=20% Similarity=0.232 Sum_probs=136.0
Q ss_pred hCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccC
Q psy5339 218 YCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRC 297 (479)
Q Consensus 218 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (479)
.+++|++|+++++.+.. ++....+++|++|+++++ .+.+... +..+++|+.|++++
T Consensus 39 ~l~~L~~L~l~~~~i~~-------------------l~~~~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~- 94 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-------------------IEGVQYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSG- 94 (308)
T ss_dssp HHHTCCEEECTTSCCCC-------------------CTTGGGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCS-
T ss_pred HcCCcCEEEeeCCCccC-------------------chhhhccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccC-
Confidence 45678888988887542 222334556999999985 4443322 46789999999998
Q ss_pred CccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCC
Q psy5339 298 VKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEA 377 (479)
Q Consensus 298 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 377 (479)
+.+.... .+ ..+++|++|++++| .+++.. . ...+++|++|+++++ .++.... ...+++|+.|++++|.
T Consensus 95 n~l~~~~--~~-~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~l~~n~- 162 (308)
T 1h6u_A 95 NPLKNVS--AI-AGLQSIKTLDLTST-QITDVT--P-LAGLSNLQVLYLDLN-QITNISP---LAGLTNLQYLSIGNAQ- 162 (308)
T ss_dssp CCCSCCG--GG-TTCTTCCEEECTTS-CCCCCG--G-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSSC-
T ss_pred CcCCCch--hh-cCCCCCCEEECCCC-CCCCch--h-hcCCCCCCEEECCCC-ccCcCcc---ccCCCCccEEEccCCc-
Confidence 4666543 33 33589999999995 666532 2 455679999999984 4544322 4477999999999975
Q ss_pred ccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccCh
Q psy5339 378 VSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISV 456 (479)
Q Consensus 378 ~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~ 456 (479)
+++ +.. ...+++|+.|++++|.+++... + ..+++|++|++++| .++.... ...+++|+.|++++|+++.
T Consensus 163 l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~--l-~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 163 VSD--LTP-LANLSKLTTLKADDNKISDISP--L-ASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCC--CGG-GTTCTTCCEEECCSSCCCCCGG--G-GGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEEEEEEC
T ss_pred CCC--Chh-hcCCCCCCEEECCCCccCcChh--h-cCCCCCCEEEccCC-ccCcccc---ccCCCCCCEEEccCCeeec
Confidence 443 111 3468999999999999875332 3 45899999999999 5555431 4678999999999998765
No 72
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.47 E-value=9.8e-16 Score=138.67 Aligned_cols=231 Identities=16% Similarity=0.102 Sum_probs=147.3
Q ss_pred CCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhh--hHHHHhhhccccccccccccCCcccceeEEecCCC
Q psy5339 194 PNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEG--YRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDC 271 (479)
Q Consensus 194 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 271 (479)
++++.|+++++ .+... ....+..+++|+.|++++|.+...+ ...+. ..++|++|+++++
T Consensus 28 ~~l~~L~L~~n-~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-----------------~~~~L~~L~Ls~n 88 (306)
T 2z66_A 28 SSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF-----------------GTTSLKYLDLSFN 88 (306)
T ss_dssp TTCCEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH-----------------SCSCCCEEECCSC
T ss_pred CCCCEEECCCC-ccCcc-CHhHhhccccCCEEECCCCccCcccCcccccc-----------------cccccCEEECCCC
Confidence 46777777765 23211 1122457788999999988865332 11111 2346999999985
Q ss_pred CCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCC
Q psy5339 272 SNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQ 351 (479)
Q Consensus 272 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~ 351 (479)
.+... ...+..+++|+.|++++ +.+...........+++|++|++++| .++... .......++|++|+++++ .
T Consensus 89 -~i~~l--~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~ 161 (306)
T 2z66_A 89 -GVITM--SSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAF-NGIFNGLSSLEVLKMAGN-S 161 (306)
T ss_dssp -SEEEE--EEEEETCTTCCEEECTT-SEEESSTTTTTTTTCTTCCEEECTTS-CCEECS-TTTTTTCTTCCEEECTTC-E
T ss_pred -ccccC--hhhcCCCCCCCEEECCC-CcccccccchhhhhccCCCEEECCCC-cCCccc-hhhcccCcCCCEEECCCC-c
Confidence 33321 11134689999999999 56665544222344589999999996 554321 122334579999999984 4
Q ss_pred CChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccch
Q psy5339 352 VSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTD 431 (479)
Q Consensus 352 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 431 (479)
++...+......+++|++|++++|. ++... ......+++|++|++++|.+++.....+ ..+++|+.|++++| .++.
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~ 237 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQ-LEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLN-HIMT 237 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECTTSCCSBCCSGGG-TTCTTCCEEECTTS-CCCB
T ss_pred cccccchhHHhhCcCCCEEECCCCC-cCCcC-HHHhcCCCCCCEEECCCCccCccChhhc-cCcccCCEeECCCC-CCcc
Confidence 4432222233467899999999975 33211 1122368999999999999765433233 34899999999999 5554
Q ss_pred hhHHHHHHcC-ccccEEEecccccC
Q psy5339 432 RGVQCIAYYC-RGLQQLNIQDCQIS 455 (479)
Q Consensus 432 ~~~~~~~~~~-~~L~~L~l~~~~i~ 455 (479)
.....+ ..+ ++|+.|++++|+++
T Consensus 238 ~~~~~~-~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 238 SKKQEL-QHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CSSSSC-CCCCTTCCEEECTTCCEE
T ss_pred cCHHHH-HhhhccCCEEEccCCCee
Confidence 333222 344 48999999999965
No 73
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.46 E-value=5.9e-14 Score=112.16 Aligned_cols=91 Identities=18% Similarity=0.298 Sum_probs=50.3
Q ss_pred CccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHH---hCCCCcEEEecCCC-CCHHHHHHHHhhC
Q psy5339 340 TLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLAR---SCTRLRALDIGKCD-VSDAGLRALAESC 415 (479)
Q Consensus 340 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~-i~~~~~~~l~~~~ 415 (479)
.|++|++++|. +++.++..+. .|++|++|++++|..++|.++..+.. .+++|++|+|++|. |||.++..+.. +
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-F 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-C
T ss_pred eEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-C
Confidence 56666666654 6666555542 55566666666665566655555543 13455555555554 55555555543 5
Q ss_pred CCCcEEeccCCcccchhh
Q psy5339 416 PNIKKLSLRQCDLVTDRG 433 (479)
Q Consensus 416 ~~L~~L~l~~~~~l~~~~ 433 (479)
++|++|++++|+.+++.+
T Consensus 139 ~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp TTCCEEEEESCTTCCCHH
T ss_pred CCCCEEECCCCCCCCchH
Confidence 555555555555555543
No 74
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.46 E-value=4.5e-15 Score=141.96 Aligned_cols=153 Identities=17% Similarity=0.100 Sum_probs=82.3
Q ss_pred CccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhcccc
Q psy5339 169 TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCC 248 (479)
Q Consensus 169 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 248 (479)
+++++|+++++.+.......+ ..+++|+.|+++++ .+.... ...+..+++|+.|++++|.+......
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~---------- 141 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRN-SIRQIE-VGAFNGLASLNTLELFDNWLTVIPSG---------- 141 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCSBCCTT----------
T ss_pred CCccEEECcCCcCceECHHHc-CCCCCCCEEECCCC-ccCCcC-hhhccCcccCCEEECCCCcCCccChh----------
Confidence 578888888887654322222 34788888888876 343221 12234678888888888774321100
Q ss_pred ccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCc
Q psy5339 249 IQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTD 328 (479)
Q Consensus 249 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 328 (479)
.....++|++|+++++ .+..... ..+..+++|+.|++++++.+.......+. .+++|+.|++++| .++.
T Consensus 142 -------~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-~l~~L~~L~L~~n-~l~~ 210 (452)
T 3zyi_A 142 -------AFEYLSKLRELWLRNN-PIESIPS-YAFNRVPSLMRLDLGELKKLEYISEGAFE-GLFNLKYLNLGMC-NIKD 210 (452)
T ss_dssp -------TSSSCTTCCEEECCSC-CCCEECT-TTTTTCTTCCEEECCCCTTCCEECTTTTT-TCTTCCEEECTTS-CCSS
T ss_pred -------hhcccCCCCEEECCCC-CcceeCH-hHHhcCCcccEEeCCCCCCccccChhhcc-CCCCCCEEECCCC-cccc
Confidence 1123445777777764 3332211 11245667777777765555554433332 2366777777664 4432
Q ss_pred HHHHHHHHcCCCccEEeccc
Q psy5339 329 FGLYELAKLGATLRYLSVAK 348 (479)
Q Consensus 329 ~~~~~l~~~~~~L~~L~l~~ 348 (479)
.. . ....++|++|++++
T Consensus 211 ~~--~-~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 211 MP--N-LTPLVGLEELEMSG 227 (452)
T ss_dssp CC--C-CTTCTTCCEEECTT
T ss_pred cc--c-ccccccccEEECcC
Confidence 10 1 12234555555555
No 75
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.45 E-value=4.3e-15 Score=141.57 Aligned_cols=227 Identities=13% Similarity=0.091 Sum_probs=116.4
Q ss_pred CccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhcccc
Q psy5339 169 TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCC 248 (479)
Q Consensus 169 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 248 (479)
++++.|+++++.+.......+ ..+++|+.|+++++ .+..... ..+..+++|++|++++|.+......
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~---------- 130 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRN-HIRTIEI-GAFNGLANLNTLELFDNRLTTIPNG---------- 130 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTT-SSCSSCCEEECCSS-CCCEECG-GGGTTCSSCCEEECCSSCCSSCCTT----------
T ss_pred CCCcEEEccCCcCCeeCHHHh-hCCCCCCEEECCCC-cCCccCh-hhccCCccCCEEECCCCcCCeeCHh----------
Confidence 578899999888654332222 34788888888876 3433221 2345678888888888875421110
Q ss_pred ccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCc
Q psy5339 249 IQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTD 328 (479)
Q Consensus 249 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 328 (479)
.....++|++|+++++ .+..... ..+..+++|+.|++++++.+.......+. .+++|+.|++++| .++.
T Consensus 131 -------~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~-~l~~L~~L~L~~n-~l~~ 199 (440)
T 3zyj_A 131 -------AFVYLSKLKELWLRNN-PIESIPS-YAFNRIPSLRRLDLGELKRLSYISEGAFE-GLSNLRYLNLAMC-NLRE 199 (440)
T ss_dssp -------TSCSCSSCCEEECCSC-CCCEECT-TTTTTCTTCCEEECCCCTTCCEECTTTTT-TCSSCCEEECTTS-CCSS
T ss_pred -------HhhccccCceeeCCCC-cccccCH-HHhhhCcccCEeCCCCCCCcceeCcchhh-cccccCeecCCCC-cCcc
Confidence 1233456777777774 3332211 12245677777777776555554433332 3467777777774 4442
Q ss_pred HHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q psy5339 329 FGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGL 408 (479)
Q Consensus 329 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 408 (479)
.. . ....++|++|++++ +.++......+ ..+++|++|++++|. ++.... .....+++|+.|+|++|.++....
T Consensus 200 ~~--~-~~~l~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 200 IP--N-LTPLIKLDELDLSG-NHLSAIRPGSF-QGLMHLQKLWMIQSQ-IQVIER-NAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp CC--C-CTTCSSCCEEECTT-SCCCEECTTTT-TTCTTCCEEECTTCC-CCEECT-TSSTTCTTCCEEECTTSCCCCCCT
T ss_pred cc--c-cCCCcccCEEECCC-CccCccChhhh-ccCccCCEEECCCCc-eeEECh-hhhcCCCCCCEEECCCCCCCccCh
Confidence 11 1 12334566666665 23332211111 234555555555542 221100 011134555555555555443221
Q ss_pred HHHHhhCCCCcEEeccCCc
Q psy5339 409 RALAESCPNIKKLSLRQCD 427 (479)
Q Consensus 409 ~~l~~~~~~L~~L~l~~~~ 427 (479)
..+ ..+++|+.|++++|+
T Consensus 273 ~~~-~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 273 DLF-TPLHHLERIHLHHNP 290 (440)
T ss_dssp TTT-SSCTTCCEEECCSSC
T ss_pred hHh-ccccCCCEEEcCCCC
Confidence 111 124555555555554
No 76
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.45 E-value=5e-15 Score=134.89 Aligned_cols=59 Identities=29% Similarity=0.301 Sum_probs=34.0
Q ss_pred ccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccC
Q psy5339 260 QLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSD 322 (479)
Q Consensus 260 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~ 322 (479)
+++|++|++++|...... ...+..+++|+.|++++|+..... ...+ ..+++|+.+++..
T Consensus 252 l~~L~~L~L~~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~~i-P~~l-~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 252 RAPLKRLILKDCSNLLTL--PLDIHRLTQLEKLDLRGCVNLSRL-PSLI-AQLPANCIILVPP 310 (328)
T ss_dssp CCCCCEEECTTCTTCCBC--CTTGGGCTTCCEEECTTCTTCCCC-CGGG-GGSCTTCEEECCG
T ss_pred CCCCCEEECCCCCchhhc--chhhhcCCCCCEEeCCCCCchhhc-cHHH-hhccCceEEeCCH
Confidence 345666666665333221 111356788888888885444332 2333 3357888888876
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.45 E-value=2e-13 Score=123.19 Aligned_cols=192 Identities=17% Similarity=0.156 Sum_probs=139.2
Q ss_pred ccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCC
Q psy5339 12 TQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCS 91 (479)
Q Consensus 12 ~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 91 (479)
....|++|++++|.+..+ +.+..+++|++|++++| .+.... . +..+++|++|+++++ .+++. +. ...++
T Consensus 39 ~l~~L~~L~l~~~~i~~l---~~~~~l~~L~~L~L~~n-~i~~~~--~-~~~l~~L~~L~L~~n-~l~~~--~~-~~~l~ 107 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI---EGVQYLNNLIGLELKDN-QITDLA--P-LKNLTKITELELSGN-PLKNV--SA-IAGLQ 107 (308)
T ss_dssp HHHTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSS-CCCCCG--G-GTTCCSCCEEECCSC-CCSCC--GG-GTTCT
T ss_pred HcCCcCEEEeeCCCccCc---hhhhccCCCCEEEccCC-cCCCCh--h-HccCCCCCEEEccCC-cCCCc--hh-hcCCC
Confidence 355789999999965543 45778899999999998 555432 2 688999999999994 67653 33 34579
Q ss_pred CCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCcc
Q psy5339 92 QLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRL 171 (479)
Q Consensus 92 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 171 (479)
+|++|+++++ .++... . ...+++|++|+++++. +..... ...+++|+.|+++++....... ...+++|
T Consensus 108 ~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L 175 (308)
T 1h6u_A 108 SIKTLDLTST-QITDVT--P-LAGLSNLQVLYLDLNQ-ITNISP---LAGLTNLQYLSIGNAQVSDLTP----LANLSKL 175 (308)
T ss_dssp TCCEEECTTS-CCCCCG--G-GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSCCCCCGG----GTTCTTC
T ss_pred CCCEEECCCC-CCCCch--h-hcCCCCCCEEECCCCc-cCcCcc---ccCCCCccEEEccCCcCCCChh----hcCCCCC
Confidence 9999999985 555432 2 4567899999999863 332221 4578999999999875433222 4456899
Q ss_pred ceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccc
Q psy5339 172 RALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 233 (479)
Q Consensus 172 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 233 (479)
++|++++|.+++... ...+++|+.|+++++. +.... . +..+++|+.|++++|.+.
T Consensus 176 ~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 176 TTLKADDNKISDISP---LASLPNLIEVHLKNNQ-ISDVS--P-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CEEECCSSCCCCCGG---GGGCTTCCEEECTTSC-CCBCG--G-GTTCTTCCEEEEEEEEEE
T ss_pred CEEECCCCccCcChh---hcCCCCCCEEEccCCc-cCccc--c-ccCCCCCCEEEccCCeee
Confidence 999999998765322 4568999999999884 44332 1 568899999999999864
No 78
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.44 E-value=1.7e-13 Score=109.44 Aligned_cols=104 Identities=17% Similarity=0.304 Sum_probs=63.3
Q ss_pred CccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCC-CCHHHHHHHHh---hCCCCcEEeccCCcccchhhHHHHHHcC
Q psy5339 366 KLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD-VSDAGLRALAE---SCPNIKKLSLRQCDLVTDRGVQCIAYYC 441 (479)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 441 (479)
+|+.|++++|. +++.++..+. .+++|++|+|++|. |+|.++..+.. .+++|++|++++|..||+.|+..+. .+
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred eEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 46666666665 6666665553 56666666666664 66666666664 1345666666666666666666553 45
Q ss_pred ccccEEEecccc-cChHH--HHHHHHhhhhccee
Q psy5339 442 RGLQQLNIQDCQ-ISVEG--YRAVKKYCKRCIIE 472 (479)
Q Consensus 442 ~~L~~L~l~~~~-i~~~~--~~~l~~~~~~~~i~ 472 (479)
++|+.|++++|+ +++.+ +..+++..|.+.|.
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~ 172 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEE
Confidence 666666666664 66543 45566666666553
No 79
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.44 E-value=7.2e-15 Score=139.99 Aligned_cols=228 Identities=16% Similarity=0.086 Sum_probs=130.0
Q ss_pred CccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCC
Q psy5339 143 YKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGL 222 (479)
Q Consensus 143 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 222 (479)
++++.|+++++..... .. ..+..+++|++|++++|.+....... ...+++|+.|+++++ .++.. ....+..+++|
T Consensus 64 ~~l~~L~L~~n~i~~~-~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLLNLHENQIQII-KV-NSFKHLRHLEILQLSRNHIRTIEIGA-FNGLANLNTLELFDN-RLTTI-PNGAFVYLSKL 138 (440)
T ss_dssp TTCSEEECCSCCCCEE-CT-TTTSSCSSCCEEECCSSCCCEECGGG-GTTCSSCCEEECCSS-CCSSC-CTTTSCSCSSC
T ss_pred CCCcEEEccCCcCCee-CH-HHhhCCCCCCEEECCCCcCCccChhh-ccCCccCCEEECCCC-cCCee-CHhHhhccccC
Confidence 5678888877642211 11 11234578888888888765432222 234678888888876 33321 11223467788
Q ss_pred cEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCc
Q psy5339 223 QQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTD 302 (479)
Q Consensus 223 ~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 302 (479)
++|++++|.+...... .....++|++|++++++.+...... .+..+++|+.|++++ +.++.
T Consensus 139 ~~L~L~~N~i~~~~~~-----------------~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~-n~l~~ 199 (440)
T 3zyj_A 139 KELWLRNNPIESIPSY-----------------AFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAM-CNLRE 199 (440)
T ss_dssp CEEECCSCCCCEECTT-----------------TTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTT-SCCSS
T ss_pred ceeeCCCCcccccCHH-----------------HhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCC-CcCcc
Confidence 8888888875422111 1223456888888876544432221 234677888888887 45554
Q ss_pred chhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHH
Q psy5339 303 IGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDA 382 (479)
Q Consensus 303 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 382 (479)
.+ .+ ..+++|+.|++++| .++..... ....+++|+.|++++ +.++......+ ..+++|+.|++++|. ++...
T Consensus 200 ~~--~~-~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~-n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~ 271 (440)
T 3zyj_A 200 IP--NL-TPLIKLDELDLSGN-HLSAIRPG-SFQGLMHLQKLWMIQ-SQIQVIERNAF-DNLQSLVEINLAHNN-LTLLP 271 (440)
T ss_dssp CC--CC-TTCSSCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTT-CCCCEECTTSS-TTCTTCCEEECTTSC-CCCCC
T ss_pred cc--cc-CCCcccCEEECCCC-ccCccChh-hhccCccCCEEECCC-CceeEEChhhh-cCCCCCCEEECCCCC-CCccC
Confidence 32 22 23478888888884 55543222 223456888888887 44544322222 256788888888764 33211
Q ss_pred HHHHHHhCCCCcEEEecCCCC
Q psy5339 383 ITVLARSCTRLRALDIGKCDV 403 (479)
Q Consensus 383 ~~~l~~~~~~L~~L~l~~~~i 403 (479)
......+++|+.|++++|++
T Consensus 272 -~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 272 -HDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp -TTTTSSCTTCCEEECCSSCE
T ss_pred -hhHhccccCCCEEEcCCCCc
Confidence 11123467888888888873
No 80
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.44 E-value=6.2e-15 Score=134.25 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=97.0
Q ss_pred HhcCCCccEEEeccCCccCcchhccc-------cccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChh
Q psy5339 283 VSNCPQLIYLYLRRCVKLTDIGIKYV-------PSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDA 355 (479)
Q Consensus 283 ~~~~~~L~~L~l~~~~~l~~~~~~~l-------~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 355 (479)
+..+++|+.|++++|+.....+.... ...+++|++|++++| .++. +......+++|++|+++++ .++..
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~--lp~~l~~l~~L~~L~L~~N-~l~~l 221 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRS--LPASIANLQNLKSLKIRNS-PLSAL 221 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCC--CCGGGGGCTTCCEEEEESS-CCCCC
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCc--chHhhcCCCCCCEEEccCC-CCCcC
Confidence 34567777777777543333221110 123578888888774 5542 2222344567888888773 34321
Q ss_pred HHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHH
Q psy5339 356 GLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQ 435 (479)
Q Consensus 356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~ 435 (479)
. .....+++|++|++++|..... +......+++|++|++++|++.......+ ..+++|++|++++|...... .
T Consensus 222 ~--~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~i--P 294 (328)
T 4fcg_A 222 G--PAIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRL--P 294 (328)
T ss_dssp C--GGGGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCBCCTTG-GGCTTCCEEECTTCTTCCCC--C
T ss_pred c--hhhccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhhcchhh-hcCCCCCEEeCCCCCchhhc--c
Confidence 1 1134678888888888764432 11122357889999999987544322233 35889999999998654432 1
Q ss_pred HHHHcCccccEEEecccccC
Q psy5339 436 CIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 436 ~~~~~~~~L~~L~l~~~~i~ 455 (479)
.....+++|+.+++..+.+.
T Consensus 295 ~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 295 SLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGGGGSCTTCEEECCGGGSC
T ss_pred HHHhhccCceEEeCCHHHHH
Confidence 22457788999988877654
No 81
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.44 E-value=4.2e-15 Score=142.12 Aligned_cols=177 Identities=19% Similarity=0.136 Sum_probs=98.9
Q ss_pred CccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCC
Q psy5339 143 YKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGL 222 (479)
Q Consensus 143 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 222 (479)
++++.|+++++.... .. ...+..+++|++|++++|.+.......+ ..+++|+.|+++++ .+... ....+..+++|
T Consensus 75 ~~l~~L~L~~n~i~~-~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMENNIQM-IQ-ADTFRHLHHLEVLQLGRNSIRQIEVGAF-NGLASLNTLELFDN-WLTVI-PSGAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSSCCCE-EC-TTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSS-CCSBC-CTTTSSSCTTC
T ss_pred CCccEEECcCCcCce-EC-HHHcCCCCCCCEEECCCCccCCcChhhc-cCcccCCEEECCCC-cCCcc-ChhhhcccCCC
Confidence 577888887764221 11 1112345788888888887654322222 34678888888876 33321 11223467788
Q ss_pred cEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCc
Q psy5339 223 QQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTD 302 (479)
Q Consensus 223 ~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 302 (479)
++|++++|.+...... .....++|++|++++++.+...... .+..+++|+.|++++ +.+..
T Consensus 150 ~~L~L~~N~l~~~~~~-----------------~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~-n~l~~ 210 (452)
T 3zyi_A 150 RELWLRNNPIESIPSY-----------------AFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGM-CNIKD 210 (452)
T ss_dssp CEEECCSCCCCEECTT-----------------TTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTT-SCCSS
T ss_pred CEEECCCCCcceeCHh-----------------HHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCC-Ccccc
Confidence 8888888875421111 1233456888888876555433222 124677888888887 45554
Q ss_pred chhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccc
Q psy5339 303 IGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAK 348 (479)
Q Consensus 303 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 348 (479)
.. .+ ..+++|+.|++++| .++...... ...+++|+.|++++
T Consensus 211 ~~--~~-~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 211 MP--NL-TPLVGLEELEMSGN-HFPEIRPGS-FHGLSSLKKLWVMN 251 (452)
T ss_dssp CC--CC-TTCTTCCEEECTTS-CCSEECGGG-GTTCTTCCEEECTT
T ss_pred cc--cc-cccccccEEECcCC-cCcccCccc-ccCccCCCEEEeCC
Confidence 32 22 23478888888884 554321111 22334566666655
No 82
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.44 E-value=2.3e-14 Score=128.13 Aligned_cols=109 Identities=19% Similarity=0.165 Sum_probs=53.7
Q ss_pred CCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCC
Q psy5339 193 CPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCS 272 (479)
Q Consensus 193 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 272 (479)
.++++.|+++++ .+.... ...+..+++|++|++++|.+...... .....++|++|+++++.
T Consensus 31 ~~~l~~L~l~~n-~i~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~-----------------~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVP-AASFRACRNLTILWLHSNVLARIDAA-----------------AFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CTTCSEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSCCCEECTT-----------------TTTTCTTCCEEECCSCT
T ss_pred CCCceEEEeeCC-cCCccC-HHHcccCCCCCEEECCCCccceeCHh-----------------hcCCccCCCEEeCCCCC
Confidence 357888888776 333221 12234667788888877764322111 11223346666666643
Q ss_pred CCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCC
Q psy5339 273 NVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDC 323 (479)
Q Consensus 273 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 323 (479)
.+....... +..+++|+.|++++ +.+.......+ ..+++|++|++++|
T Consensus 92 ~l~~~~~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~-~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 92 QLRSVDPAT-FHGLGRLHTLHLDR-CGLQELGPGLF-RGLAALQYLYLQDN 139 (285)
T ss_dssp TCCCCCTTT-TTTCTTCCEEECTT-SCCCCCCTTTT-TTCTTCCEEECCSS
T ss_pred CccccCHHH-hcCCcCCCEEECCC-CcCCEECHhHh-hCCcCCCEEECCCC
Confidence 232221111 23456666666666 34444332222 22356666666663
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=5.6e-14 Score=135.04 Aligned_cols=238 Identities=15% Similarity=0.127 Sum_probs=127.4
Q ss_pred cccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHhC
Q psy5339 37 TQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLG 116 (479)
Q Consensus 37 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 116 (479)
.+++|++|++++| .+.... +..+..+++|++|++++| .++... . ...+++|++|+++++ .++... ..
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~Ls~N-~l~~l~------~~ 98 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQIS-AADLAPFTKLELLNLSSN-VLYETL--D-LESLSTLRTLDLNNN-YVQELL------VG 98 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCC-GGGGTTCTTCCEEECTTS-CCEEEE--E-CTTCTTCCEEECCSS-EEEEEE------EC
T ss_pred cCCCccEEEeeCC-cCCCCC-HHHHhCCCCCCEEEeeCC-CCCCCc--c-cccCCCCCEEEecCC-cCCCCC------CC
Confidence 3457788888776 444321 233467777888888774 554322 1 344677777777764 444221 12
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHcCCCC
Q psy5339 117 ATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNI 196 (479)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 196 (479)
++|++|+++++. +..... . .+++|+.|++++|.++......+ ..+++|
T Consensus 99 ~~L~~L~L~~N~-l~~~~~----~--------------------------~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L 146 (487)
T 3oja_A 99 PSIETLHAANNN-ISRVSC----S--------------------------RGQGKKNIYLANNKITMLRDLDE-GCRSRV 146 (487)
T ss_dssp TTCCEEECCSSC-CCCEEE----C--------------------------CCSSCEEEECCSSCCCSGGGBCG-GGGSSE
T ss_pred CCcCEEECcCCc-CCCCCc----c--------------------------ccCCCCEEECCCCCCCCCCchhh-cCCCCC
Confidence 455666555531 111000 0 12556666666665543221111 235666
Q ss_pred cEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCCh
Q psy5339 197 KKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDD 276 (479)
Q Consensus 197 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 276 (479)
+.|+++++ .++......+...+++|+.|++++|.+.. ++.....++|++|+++++ .+..
T Consensus 147 ~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-------------------~~~~~~l~~L~~L~Ls~N-~l~~ 205 (487)
T 3oja_A 147 QYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYD-------------------VKGQVVFAKLKTLDLSSN-KLAF 205 (487)
T ss_dssp EEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCE-------------------EECCCCCTTCCEEECCSS-CCCE
T ss_pred CEEECCCC-CCCCcChHHHhhhCCcccEEecCCCcccc-------------------ccccccCCCCCEEECCCC-CCCC
Confidence 66666665 34333333333356677777777776432 122223455777777764 3433
Q ss_pred hhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEec
Q psy5339 277 QGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSV 346 (479)
Q Consensus 277 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 346 (479)
.... +..+++|+.|++++ +.+...+. ....+++|+.|++++| .+....+..+...++.|+.+++
T Consensus 206 ~~~~--~~~l~~L~~L~Ls~-N~l~~lp~--~l~~l~~L~~L~l~~N-~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 206 MGPE--FQSAAGVTWISLRN-NKLVLIEK--ALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp ECGG--GGGGTTCSEEECTT-SCCCEECT--TCCCCTTCCEEECTTC-CBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCHh--HcCCCCccEEEecC-CcCcccch--hhccCCCCCEEEcCCC-CCcCcchHHHHHhCCCCcEEec
Confidence 2211 34678888888888 56664322 1234578888888884 5654444444444555555554
No 84
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.41 E-value=2.5e-15 Score=136.09 Aligned_cols=160 Identities=13% Similarity=0.072 Sum_probs=106.6
Q ss_pred hcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHh
Q psy5339 284 SNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARR 363 (479)
Q Consensus 284 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 363 (479)
..+++|++|++++ +.+.......+ ..+++|++|++++| .++......+....++|++|++++ +.++......+ ..
T Consensus 122 ~~l~~L~~L~Ls~-N~l~~~~p~~~-~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~~~-~~ 196 (313)
T 1ogq_A 122 SQIKTLVTLDFSY-NALSGTLPPSI-SSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPTF-AN 196 (313)
T ss_dssp GGCTTCCEEECCS-SEEESCCCGGG-GGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCS-SEEEEECCGGG-GG
T ss_pred hCCCCCCEEeCCC-CccCCcCChHH-hcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcC-CeeeccCChHH-hC
Confidence 5689999999999 56664433334 34599999999995 565332223333334899999998 44442222222 23
Q ss_pred CCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCcc
Q psy5339 364 CYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRG 443 (479)
Q Consensus 364 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 443 (479)
++ |+.|++++|.. +.. .......+++|+.|++++|.++.... . ...+++|++|++++| .++..... .+..+++
T Consensus 197 l~-L~~L~Ls~N~l-~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~-~-~~~l~~L~~L~Ls~N-~l~~~~p~-~l~~l~~ 269 (313)
T 1ogq_A 197 LN-LAFVDLSRNML-EGD-ASVLFGSDKNTQKIHLAKNSLAFDLG-K-VGLSKNLNGLDLRNN-RIYGTLPQ-GLTQLKF 269 (313)
T ss_dssp CC-CSEEECCSSEE-EEC-CGGGCCTTSCCSEEECCSSEECCBGG-G-CCCCTTCCEEECCSS-CCEECCCG-GGGGCTT
T ss_pred Cc-ccEEECcCCcc-cCc-CCHHHhcCCCCCEEECCCCceeeecC-c-ccccCCCCEEECcCC-cccCcCCh-HHhcCcC
Confidence 44 99999999753 321 12222368999999999998763221 1 235799999999999 45532222 2357799
Q ss_pred ccEEEecccccC
Q psy5339 444 LQQLNIQDCQIS 455 (479)
Q Consensus 444 L~~L~l~~~~i~ 455 (479)
|+.|++++|+++
T Consensus 270 L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 270 LHSLNVSFNNLC 281 (313)
T ss_dssp CCEEECCSSEEE
T ss_pred CCEEECcCCccc
Confidence 999999999976
No 85
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.41 E-value=3.8e-14 Score=126.73 Aligned_cols=131 Identities=17% Similarity=0.164 Sum_probs=73.3
Q ss_pred CccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcc-cchhhhHHHHhhhccc
Q psy5339 169 TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQ-ISVEGYRAVKKYCKRC 247 (479)
Q Consensus 169 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~~ 247 (479)
+++++|+++++.++......+ ..+++|+.|+++++ .+.... ...+..+++|++|++++|. +......
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~--------- 99 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASF-RACRNLTILWLHSN-VLARID-AAAFTGLALLEQLDLSDNAQLRSVDPA--------- 99 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTT---------
T ss_pred CCceEEEeeCCcCCccCHHHc-ccCCCCCEEECCCC-ccceeC-HhhcCCccCCCEEeCCCCCCccccCHH---------
Confidence 577888888777654322222 34677888888776 333221 1223467778888888775 3321111
Q ss_pred cccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCC
Q psy5339 248 CIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDC 323 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 323 (479)
.....++|++|+++++ .+..... ..+..+++|+.|++++ +.+.......+. .+++|+.|++++|
T Consensus 100 --------~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~-n~l~~~~~~~~~-~l~~L~~L~l~~n 163 (285)
T 1ozn_A 100 --------TFHGLGRLHTLHLDRC-GLQELGP-GLFRGLAALQYLYLQD-NALQALPDDTFR-DLGNLTHLFLHGN 163 (285)
T ss_dssp --------TTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCS-SCCCCCCTTTTT-TCTTCCEEECCSS
T ss_pred --------HhcCCcCCCEEECCCC-cCCEECH-hHhhCCcCCCEEECCC-CcccccCHhHhc-cCCCccEEECCCC
Confidence 1223446788888774 3332211 1234577888888877 455544433332 2367777777774
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=2.4e-13 Score=122.96 Aligned_cols=236 Identities=14% Similarity=0.036 Sum_probs=114.4
Q ss_pred ccceeccCCCCCCchhhHHHHHh--cCCcccEEecccccccchhhHhhhh-hcCCCCcEEEeecCcccCcHHHHHHHHhC
Q psy5339 40 LLQFLDLTDCSNVDDQGLSLIVS--NCPQLIYLYLRRCVKLTDIGIKYVP-SFCSQLKELSVSDCTQVTDFGLYELAKLG 116 (479)
Q Consensus 40 ~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 116 (479)
.++.+.+.++ .+.+..+..+.. .+++|++|++++| .++......+. ..+++|++|+++++ .++....
T Consensus 65 ~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~------- 134 (310)
T 4glp_A 65 RVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNV-SWATGRS------- 134 (310)
T ss_dssp CCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTS-------
T ss_pred ceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecc-cccchhh-------
Confidence 4566666665 455544444332 2356777777774 44433222221 44566777777763 3432100
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHH-HH--HHHHcC
Q psy5339 117 ATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAG-LR--ALAESC 193 (479)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~--~l~~~~ 193 (479)
......+ ..+++|++|+++++..... ....+..+++|++|++++|++.... +. .....+
T Consensus 135 ---------------~~~~~~~-~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 135 ---------------WLAELQQ-WLKPGLKVLSIAQAHSPAF--SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp ---------------SHHHHHT-TBCSCCCEEEEECCSSCCC--CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred ---------------hhHHHHh-hhccCCCEEEeeCCCcchh--hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 0000011 1334444444444321100 0011123456666666666644321 11 111345
Q ss_pred CCCcEEecCCCCCcCh--HHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCC
Q psy5339 194 PNIKKLSLRQCDLVTD--RGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDC 271 (479)
Q Consensus 194 ~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 271 (479)
++|+.|+++++ .++. .....++..+++|++|++++|.+....... +......++|++|+++++
T Consensus 197 ~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~--------------~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 197 PAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS--------------APRCMWSSALNSLNLSFA 261 (310)
T ss_dssp CCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC--------------CSSCCCCTTCCCEECCSS
T ss_pred CCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh--------------HHhccCcCcCCEEECCCC
Confidence 66777777766 3331 122223456677777777777654221000 111111245777777764
Q ss_pred CCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCc
Q psy5339 272 SNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTD 328 (479)
Q Consensus 272 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 328 (479)
.+... +. ...++|+.|++++ +.++..+. ...+++|+.|+++++ .+++
T Consensus 262 -~l~~l--p~--~~~~~L~~L~Ls~-N~l~~~~~---~~~l~~L~~L~L~~N-~l~~ 308 (310)
T 4glp_A 262 -GLEQV--PK--GLPAKLRVLDLSS-NRLNRAPQ---PDELPEVDNLTLDGN-PFLV 308 (310)
T ss_dssp -CCCSC--CS--CCCSCCSCEECCS-CCCCSCCC---TTSCCCCSCEECSST-TTSC
T ss_pred -CCCch--hh--hhcCCCCEEECCC-CcCCCCch---hhhCCCccEEECcCC-CCCC
Confidence 33321 11 1136888999988 56765422 234588999999884 5554
No 87
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.34 E-value=4.6e-12 Score=115.69 Aligned_cols=175 Identities=14% Similarity=0.152 Sum_probs=109.4
Q ss_pred hcCCCccEEEeccCCccC--------cchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChh
Q psy5339 284 SNCPQLIYLYLRRCVKLT--------DIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDA 355 (479)
Q Consensus 284 ~~~~~L~~L~l~~~~~l~--------~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~ 355 (479)
..+++|+.|.+.+ .... ...+..+...+|+|+.|.++++..+.-. .+ ..++|++|++.. ..++..
T Consensus 136 ~~l~~L~~L~l~~-~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~---~~--~~~~L~~L~L~~-~~l~~~ 208 (362)
T 2ra8_A 136 EKFAHFEGLFWGD-IDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIG---KK--PRPNLKSLEIIS-GGLPDS 208 (362)
T ss_dssp HHHTTCSEEEECC-CCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCC---SC--BCTTCSEEEEEC-SBCCHH
T ss_pred hhcchhhheeecC-cchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceec---cc--cCCCCcEEEEec-CCCChH
Confidence 3567888887754 2211 1123333444578888888775222211 11 246788888876 456777
Q ss_pred HHHHHHH-hCCCccEEeccCCCC--ccH---HHHHHHH--HhCCCCcEEEecCCCCCHHHHHHHHh--hCCCCcEEeccC
Q psy5339 356 GLKVIAR-RCYKLRYLNARGCEA--VSD---DAITVLA--RSCTRLRALDIGKCDVSDAGLRALAE--SCPNIKKLSLRQ 425 (479)
Q Consensus 356 ~~~~~~~-~~~~L~~L~l~~~~~--~~~---~~~~~l~--~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~L~~L~l~~ 425 (479)
++..+.. .+|+|++|+++.+.. ..+ ..+..+. ..+|+|++|++.+|.+++.+...+++ .+|+|++|+++.
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 7766654 578888887753110 011 0111111 24788888888888888776666664 467888888888
Q ss_pred CcccchhhHHHHH---HcCccccEEEecccccChHHHHHHHHhh
Q psy5339 426 CDLVTDRGVQCIA---YYCRGLQQLNIQDCQISVEGYRAVKKYC 466 (479)
Q Consensus 426 ~~~l~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 466 (479)
| .+++.+...+. ..+++|+.|++++|.+++++++++.+.+
T Consensus 289 n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 289 G-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp S-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred C-CCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 7 67777766554 3467888888888888888888887744
No 88
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.28 E-value=2.1e-10 Score=94.56 Aligned_cols=132 Identities=16% Similarity=0.137 Sum_probs=97.9
Q ss_pred HHHHHHcCCCccEEeccccCCCChhHHHHHHH---hCCCccEEeccCCCCccHHHHHHHH---HhCCCCcEEEecCCCCC
Q psy5339 331 LYELAKLGATLRYLSVAKCDQVSDAGLKVIAR---RCYKLRYLNARGCEAVSDDAITVLA---RSCTRLRALDIGKCDVS 404 (479)
Q Consensus 331 ~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~i~ 404 (479)
+.......++|++|+++++..+++.++..++. ..++|++|++++|. +++.+...++ ...++|++|+|++|.|+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 44455556778888888744777777666544 35788999998864 7776655443 45689999999999999
Q ss_pred HHHHHHHHhh---CCCCcEEec--cCCcccchhhHHHH---HHcCccccEEEecccccChHH--HHHHHH
Q psy5339 405 DAGLRALAES---CPNIKKLSL--RQCDLVTDRGVQCI---AYYCRGLQQLNIQDCQISVEG--YRAVKK 464 (479)
Q Consensus 405 ~~~~~~l~~~---~~~L~~L~l--~~~~~l~~~~~~~~---~~~~~~L~~L~l~~~~i~~~~--~~~l~~ 464 (479)
+++...+++. .++|++|++ ++| .+++.+...+ ....++|++|++++|.+++.+ .+.+..
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~i~~~L~~ 175 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLRASNAMMN 175 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHHHHHHHHh
Confidence 9998888764 567999999 778 6888775543 345689999999999998887 344443
No 89
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.27 E-value=6.8e-11 Score=108.01 Aligned_cols=184 Identities=17% Similarity=0.180 Sum_probs=130.3
Q ss_pred ccceeEEecCCCCC----C---ChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHH
Q psy5339 260 QLLLQFLDLTDCSN----V---DDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLY 332 (479)
Q Consensus 260 ~~~L~~L~l~~~~~----~---~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 332 (479)
+++|+.|.+.+... + ....+..+...+|+|+.|.++++..+. +..+ . .++|++|++..| .+++..+.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~---l~~~-~-~~~L~~L~L~~~-~l~~~~l~ 211 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS---IGKK-P-RPNLKSLEIISG-GLPDSVVE 211 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB---CCSC-B-CTTCSEEEEECS-BCCHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce---eccc-c-CCCCcEEEEecC-CCChHHHH
Confidence 34588888865321 1 112355667789999999999853232 2222 2 589999999985 78888888
Q ss_pred HHHH-cCCCccEEeccccCC--CChh---HHHHHH--HhCCCccEEeccCCCCccHHHHHHHHH--hCCCCcEEEecCCC
Q psy5339 333 ELAK-LGATLRYLSVAKCDQ--VSDA---GLKVIA--RRCYKLRYLNARGCEAVSDDAITVLAR--SCTRLRALDIGKCD 402 (479)
Q Consensus 333 ~l~~-~~~~L~~L~l~~~~~--l~~~---~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~ 402 (479)
.+.. .+|+|++|+|+.+.. ..+. .+.... ..+|+|+.|++.+|. +.+.....+.. .+|+|++|+|+.|.
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCC
Confidence 7775 578999999863211 1111 111111 247999999999875 55555445543 47899999999999
Q ss_pred CCHHHHHHHHh---hCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccc
Q psy5339 403 VSDAGLRALAE---SCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQ 453 (479)
Q Consensus 403 i~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 453 (479)
+++.+...+.. .+++|+.|++++| .+++.++..+...+ .-.+++++++
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 99999888874 4799999999999 68998888776533 4668898887
No 90
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.26 E-value=1.2e-12 Score=115.88 Aligned_cols=181 Identities=18% Similarity=0.135 Sum_probs=110.5
Q ss_pred cceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCC
Q psy5339 261 LLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGAT 340 (479)
Q Consensus 261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 340 (479)
+++++|+++++ .+...... .+..+++|++|++++ +.++......+ ..+++|++|+++++ .++.... .....+++
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~-n~l~~i~~~~~-~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~ 110 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSK-AFHRLTKLRLLYLND-NKLQTLPAGIF-KELKNLETLWVTDN-KLQALPI-GVFDQLVN 110 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTT-SSSSCTTCCEEECCS-SCCSCCCTTTT-SSCTTCCEEECCSS-CCCCCCT-TTTTTCSS
T ss_pred CCCCEEECcCC-CCCeeCHH-HhcCCCCCCEEECCC-CccCeeChhhh-cCCCCCCEEECCCC-cCCcCCH-hHcccccC
Confidence 35888888774 33332211 124678888888887 56665443333 23478888888884 5543221 12234568
Q ss_pred ccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcE
Q psy5339 341 LRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKK 420 (479)
Q Consensus 341 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 420 (479)
|++|++++ +.++...... ...+++|++|++++|. ++... ......+++|++|++++|.++......+. .+++|++
T Consensus 111 L~~L~l~~-n~l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~ 185 (270)
T 2o6q_A 111 LAELRLDR-NQLKSLPPRV-FDSLTKLTYLSLGYNE-LQSLP-KGVFDKLTSLKELRLYNNQLKRVPEGAFD-KLTELKT 185 (270)
T ss_dssp CCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCE
T ss_pred CCEEECCC-CccCeeCHHH-hCcCcCCCEEECCCCc-CCccC-HhHccCCcccceeEecCCcCcEeChhHhc-cCCCcCE
Confidence 88888887 4444332211 2356889999998864 33211 11123578899999999887653322232 4788999
Q ss_pred EeccCCcccchhhHHHHHHcCccccEEEeccccc
Q psy5339 421 LSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQI 454 (479)
Q Consensus 421 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i 454 (479)
|++++| .++..... .+..+++|+.|++++|++
T Consensus 186 L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 186 LKLDNN-QLKRVPEG-AFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCB
T ss_pred EECCCC-cCCcCCHH-HhccccCCCEEEecCCCe
Confidence 999988 55543222 234678899999999875
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.26 E-value=1.1e-11 Score=110.60 Aligned_cols=173 Identities=18% Similarity=0.163 Sum_probs=124.9
Q ss_pred ccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCC
Q psy5339 260 QLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGA 339 (479)
Q Consensus 260 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 339 (479)
+++|++|+++++ .+... .. +..+++|+.|++++ +.+.+... + ..+++|+.|++++| .+++. .. ...++
T Consensus 45 l~~L~~L~l~~~-~i~~~--~~-~~~l~~L~~L~L~~-n~l~~~~~--l-~~l~~L~~L~l~~n-~l~~~--~~-l~~l~ 112 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNG-NKLTDIKP--L-ANLKNLGWLFLDEN-KVKDL--SS-LKDLK 112 (291)
T ss_dssp HHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCS-SCCCCCGG--G-TTCTTCCEEECCSS-CCCCG--GG-GTTCT
T ss_pred cCcccEEEccCC-CcccC--hh-HhcCCCCCEEEccC-CccCCCcc--c-ccCCCCCEEECCCC-cCCCC--hh-hccCC
Confidence 446999999986 33332 11 36789999999999 56766543 3 44589999999995 66653 22 45567
Q ss_pred CccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCc
Q psy5339 340 TLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIK 419 (479)
Q Consensus 340 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~ 419 (479)
+|++|+++++ .++... . ...+++|+.|++++|. ++.. . ....+++|++|++++|.+++... ...+++|+
T Consensus 113 ~L~~L~L~~n-~i~~~~--~-l~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~ 181 (291)
T 1h6t_A 113 KLKSLSLEHN-GISDIN--G-LVHLPQLESLYLGNNK-ITDI--T-VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQ 181 (291)
T ss_dssp TCCEEECTTS-CCCCCG--G-GGGCTTCCEEECCSSC-CCCC--G-GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCC
T ss_pred CCCEEECCCC-cCCCCh--h-hcCCCCCCEEEccCCc-CCcc--h-hhccCCCCCEEEccCCccccchh---hcCCCccC
Confidence 9999999984 555431 2 3467999999999975 4332 2 23468999999999999876432 34599999
Q ss_pred EEeccCCcccchhhHHHHHHcCccccEEEecccccChHHH
Q psy5339 420 KLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGY 459 (479)
Q Consensus 420 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 459 (479)
.|++++| .+++.. . ...+++|+.|++++|+++...+
T Consensus 182 ~L~L~~N-~i~~l~--~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 182 NLYLSKN-HISDLR--A-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp EEECCSS-CCCBCG--G-GTTCTTCSEEEEEEEEEECCCE
T ss_pred EEECCCC-cCCCCh--h-hccCCCCCEEECcCCcccCCcc
Confidence 9999999 566532 2 4678999999999998765443
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.25 E-value=4.9e-12 Score=106.06 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=91.8
Q ss_pred CCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCC
Q psy5339 286 CPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCY 365 (479)
Q Consensus 286 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 365 (479)
+++|+.|++++ +.+.+.. .+ ..+++|++|++++| .+++.. ....+++|++|++++ +.++......+ ..++
T Consensus 43 l~~L~~L~l~~-n~i~~l~--~l-~~l~~L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~-n~l~~~~~~~l-~~l~ 112 (197)
T 4ezg_A 43 MNSLTYITLAN-INVTDLT--GI-EYAHNIKDLTINNI-HATNYN---PISGLSNLERLRIMG-KDVTSDKIPNL-SGLT 112 (197)
T ss_dssp HHTCCEEEEES-SCCSCCT--TG-GGCTTCSEEEEESC-CCSCCG---GGTTCTTCCEEEEEC-TTCBGGGSCCC-TTCT
T ss_pred cCCccEEeccC-CCccChH--HH-hcCCCCCEEEccCC-CCCcch---hhhcCCCCCEEEeEC-CccCcccChhh-cCCC
Confidence 45677777766 4555322 22 23467777777765 444321 223356777777776 44544333222 2567
Q ss_pred CccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCC-CCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccc
Q psy5339 366 KLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCD-VSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGL 444 (479)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 444 (479)
+|++|++++|. +++.....+ ..+++|++|++++|. +++.. .+ ..+++|++|++++| .+++.. ....+++|
T Consensus 113 ~L~~L~Ls~n~-i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~--~l-~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L 183 (197)
T 4ezg_A 113 SLTLLDISHSA-HDDSILTKI-NTLPKVNSIDLSYNGAITDIM--PL-KTLPELKSLNIQFD-GVHDYR---GIEDFPKL 183 (197)
T ss_dssp TCCEEECCSSB-CBGGGHHHH-TTCSSCCEEECCSCTBCCCCG--GG-GGCSSCCEEECTTB-CCCCCT---TGGGCSSC
T ss_pred CCCEEEecCCc-cCcHhHHHH-hhCCCCCEEEccCCCCccccH--hh-cCCCCCCEEECCCC-CCcChH---HhccCCCC
Confidence 88888888864 444333333 367888888888887 66542 33 35888999999888 466533 24567889
Q ss_pred cEEEecccccCh
Q psy5339 445 QQLNIQDCQISV 456 (479)
Q Consensus 445 ~~L~l~~~~i~~ 456 (479)
+.|++++|+++.
T Consensus 184 ~~L~l~~N~i~~ 195 (197)
T 4ezg_A 184 NQLYAFSQTIGG 195 (197)
T ss_dssp CEEEECBC----
T ss_pred CEEEeeCcccCC
Confidence 999999988764
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.25 E-value=1.2e-12 Score=115.95 Aligned_cols=197 Identities=16% Similarity=0.150 Sum_probs=109.8
Q ss_pred hCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccC
Q psy5339 218 YCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRC 297 (479)
Q Consensus 218 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (479)
.+++|++|+++++.+.. ++....+++|++|+++++ .+... . ....+++|+.|++++
T Consensus 39 ~l~~L~~L~l~~~~i~~-------------------~~~l~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~L~~- 94 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-------------------VQGIQYLPNVRYLALGGN-KLHDI--S-ALKELTNLTYLILTG- 94 (272)
T ss_dssp HHTTCCEEECTTSCCCC-------------------CTTGGGCTTCCEEECTTS-CCCCC--G-GGTTCTTCCEEECTT-
T ss_pred cccceeeeeeCCCCccc-------------------ccccccCCCCcEEECCCC-CCCCc--h-hhcCCCCCCEEECCC-
Confidence 45778888888876432 222233456888888875 33332 1 235678888888888
Q ss_pred CccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCC
Q psy5339 298 VKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEA 377 (479)
Q Consensus 298 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 377 (479)
+.++......+. .+++|++|++++| .++.... .....+++|++|+++++ .++.... .....+++|+.|++++|.
T Consensus 95 n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~- 168 (272)
T 3rfs_A 95 NQLQSLPNGVFD-KLTNLKELVLVEN-QLQSLPD-GVFDKLTNLTYLNLAHN-QLQSLPK-GVFDKLTNLTELDLSYNQ- 168 (272)
T ss_dssp SCCCCCCTTTTT-TCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-
T ss_pred CccCccChhHhc-CCcCCCEEECCCC-cCCccCH-HHhccCCCCCEEECCCC-ccCccCH-HHhccCccCCEEECCCCC-
Confidence 466654433332 3478888888885 4543211 11233457777877773 4443221 112345777777777754
Q ss_pred ccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccC
Q psy5339 378 VSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 378 ~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 455 (479)
++... ......+++|++|++++|.+++.....+ ..+++|+.|++++|+.. ..++.|+.|+++.|.++
T Consensus 169 l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~~~---------~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 169 LQSLP-EGVFDKLTQLKDLRLYQNQLKSVPDGVF-DRLTSLQYIWLHDNPWD---------CTCPGIRYLSEWINKHS 235 (272)
T ss_dssp CCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCBC---------CCTTTTHHHHHHHHHTG
T ss_pred cCccC-HHHhcCCccCCEEECCCCcCCccCHHHH-hCCcCCCEEEccCCCcc---------ccCcHHHHHHHHHHhCC
Confidence 33211 1112246777777777777654222212 24677777777777432 12455666665555443
No 94
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.24 E-value=2.4e-13 Score=120.87 Aligned_cols=111 Identities=19% Similarity=0.124 Sum_probs=55.6
Q ss_pred CCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCcc--HHHHHHHHHhCCCCc-EEEecCCCCCHHHHHHHHhhC
Q psy5339 339 ATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVS--DDAITVLARSCTRLR-ALDIGKCDVSDAGLRALAESC 415 (479)
Q Consensus 339 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~~L~-~L~l~~~~i~~~~~~~l~~~~ 415 (479)
++|++|++++ +.++...+......+++|++|++++|..-. ...+..+ ..++.|. .|++++|.++......+ ..
T Consensus 124 ~~L~~L~l~~-n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~ls~n~l~~~~~~~~--~~ 199 (276)
T 2z62_A 124 KTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMNFIQPGAF--KE 199 (276)
T ss_dssp TTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEECCSSCCCEECTTSS--CS
T ss_pred CCCCEEECcC-CccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhccccceeeecCCCcccccCcccc--CC
Confidence 4555555554 233221111122345666666666653211 1122222 1233343 77777777654221111 23
Q ss_pred CCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccC
Q psy5339 416 PNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 416 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 455 (479)
.+|++|++++| .++.... ..+..+++|+.|++++|+++
T Consensus 200 ~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 200 IRLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCEEEEECCSS-CCSCCCT-TTTTTCCSCCEEECCSSCBC
T ss_pred CcccEEECCCC-ceeecCH-hHhcccccccEEEccCCccc
Confidence 46888888887 4554322 22345678888888887755
No 95
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.24 E-value=5.3e-13 Score=118.66 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=23.4
Q ss_pred CCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcc
Q psy5339 391 TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDL 428 (479)
Q Consensus 391 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 428 (479)
.+|++|++++|.++..... ....+++|+.|++++|+.
T Consensus 200 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 200 IRLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCEEEEECCSSCCSCCCTT-TTTTCCSCCEEECCSSCB
T ss_pred CcccEEECCCCceeecCHh-HhcccccccEEEccCCcc
Confidence 4677788887776543222 223477888888887743
No 96
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.24 E-value=1.3e-12 Score=116.54 Aligned_cols=201 Identities=16% Similarity=0.138 Sum_probs=122.7
Q ss_pred hCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccC
Q psy5339 218 YCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRC 297 (479)
Q Consensus 218 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (479)
.++++++++++++.+. .++.. ..++++.|+++++ .+...... .+..+++|+.|++++
T Consensus 8 ~l~~l~~l~~~~~~l~-------------------~ip~~-~~~~l~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~- 64 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-------------------ALPPD-LPKDTTILHLSEN-LLYTFSLA-TLMPYTRLTQLNLDR- 64 (290)
T ss_dssp CSTTCCEEECTTSCCS-------------------SCCSC-CCTTCCEEECTTS-CCSEEEGG-GGTTCTTCCEEECTT-
T ss_pred ccCCccEEECCCCCCC-------------------cCCCC-CCCCCCEEEcCCC-cCCccCHH-HhhcCCCCCEEECCC-
Confidence 4567778887776633 22211 1246888888874 44433222 235678888888888
Q ss_pred CccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCC
Q psy5339 298 VKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEA 377 (479)
Q Consensus 298 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 377 (479)
+.++..... ..+++|+.|+++++ .++.. .......++|++|++++ +.++...... ...+++|++|++++|.
T Consensus 65 n~l~~~~~~---~~l~~L~~L~Ls~N-~l~~l--~~~~~~l~~L~~L~l~~-N~l~~l~~~~-~~~l~~L~~L~L~~N~- 135 (290)
T 1p9a_G 65 AELTKLQVD---GTLPVLGTLDLSHN-QLQSL--PLLGQTLPALTVLDVSF-NRLTSLPLGA-LRGLGELQELYLKGNE- 135 (290)
T ss_dssp SCCCEEECC---SCCTTCCEEECCSS-CCSSC--CCCTTTCTTCCEEECCS-SCCCCCCSST-TTTCTTCCEEECTTSC-
T ss_pred CccCcccCC---CCCCcCCEEECCCC-cCCcC--chhhccCCCCCEEECCC-CcCcccCHHH-HcCCCCCCEEECCCCC-
Confidence 566654332 34578888888884 55431 12234457888888887 4454322111 2356889999998864
Q ss_pred ccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccC
Q psy5339 378 VSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 378 ~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 455 (479)
++.. .......+++|+.|++++|+++.... .....+++|+.|++++| .++... ......++|+.|++++|++.
T Consensus 136 l~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N-~l~~ip--~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 136 LKTL-PPGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQEN-SLYTIP--KGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCC-CTTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSS-CCCCCC--TTTTTTCCCSEEECCSCCBC
T ss_pred CCcc-ChhhcccccCCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCC-cCCccC--hhhcccccCCeEEeCCCCcc
Confidence 3321 11122357889999999998764222 12234788999999988 455322 11234578899999988754
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.19 E-value=5e-11 Score=106.42 Aligned_cols=171 Identities=22% Similarity=0.237 Sum_probs=120.7
Q ss_pred hCCCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccC
Q psy5339 218 YCRGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRC 297 (479)
Q Consensus 218 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 297 (479)
.+++|+.|++++|.+.. ++....+++|++|+++++ .+..... +..+++|+.|++++
T Consensus 44 ~l~~L~~L~l~~~~i~~-------------------~~~~~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~- 99 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS-------------------VQGIQYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDE- 99 (291)
T ss_dssp HHHTCCEEECTTSCCCC-------------------CTTGGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCS-
T ss_pred hcCcccEEEccCCCccc-------------------ChhHhcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCC-
Confidence 45778899998887542 222334557999999985 4443322 46789999999999
Q ss_pred CccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCC
Q psy5339 298 VKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEA 377 (479)
Q Consensus 298 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 377 (479)
+.+.+.. .+ ..+++|++|++++| .+++. . ....+++|++|++++ +.++.. .....+++|+.|++++|.
T Consensus 100 n~l~~~~--~l-~~l~~L~~L~L~~n-~i~~~--~-~l~~l~~L~~L~l~~-n~l~~~---~~l~~l~~L~~L~L~~N~- 167 (291)
T 1h6t_A 100 NKVKDLS--SL-KDLKKLKSLSLEHN-GISDI--N-GLVHLPQLESLYLGN-NKITDI---TVLSRLTKLDTLSLEDNQ- 167 (291)
T ss_dssp SCCCCGG--GG-TTCTTCCEEECTTS-CCCCC--G-GGGGCTTCCEEECCS-SCCCCC---GGGGGCTTCSEEECCSSC-
T ss_pred CcCCCCh--hh-ccCCCCCEEECCCC-cCCCC--h-hhcCCCCCCEEEccC-CcCCcc---hhhccCCCCCEEEccCCc-
Confidence 5666532 23 34589999999995 66653 2 234567999999998 455543 223478999999999975
Q ss_pred ccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccch
Q psy5339 378 VSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTD 431 (479)
Q Consensus 378 ~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~ 431 (479)
+++.. . ...+++|+.|++++|.+++. ..+ ..+++|+.|++++|+ ++.
T Consensus 168 l~~~~--~-l~~l~~L~~L~L~~N~i~~l--~~l-~~l~~L~~L~l~~n~-i~~ 214 (291)
T 1h6t_A 168 ISDIV--P-LAGLTKLQNLYLSKNHISDL--RAL-AGLKNLDVLELFSQE-CLN 214 (291)
T ss_dssp CCCCG--G-GTTCTTCCEEECCSSCCCBC--GGG-TTCTTCSEEEEEEEE-EEC
T ss_pred cccch--h-hcCCCccCEEECCCCcCCCC--hhh-ccCCCCCEEECcCCc-ccC
Confidence 44321 1 34689999999999998763 333 358999999999994 444
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.17 E-value=9.7e-11 Score=98.09 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=44.6
Q ss_pred CCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCC
Q psy5339 339 ATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNI 418 (479)
Q Consensus 339 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L 418 (479)
++|++|++++ +.+++.....+. .+++|++|++++|..+++. . ....+++|++|++++|.+++.. .+ ..+++|
T Consensus 112 ~~L~~L~Ls~-n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~i~~~~--~l-~~l~~L 183 (197)
T 4ezg_A 112 TSLTLLDISH-SAHDDSILTKIN-TLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDGVHDYR--GI-EDFPKL 183 (197)
T ss_dssp TTCCEEECCS-SBCBGGGHHHHT-TCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBCCCCCT--TG-GGCSSC
T ss_pred CCCCEEEecC-CccCcHhHHHHh-hCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCCCcChH--Hh-ccCCCC
Confidence 4555555555 334433333332 4566666666665433332 1 1235777777777777766522 23 347778
Q ss_pred cEEeccCC
Q psy5339 419 KKLSLRQC 426 (479)
Q Consensus 419 ~~L~l~~~ 426 (479)
+.|++++|
T Consensus 184 ~~L~l~~N 191 (197)
T 4ezg_A 184 NQLYAFSQ 191 (197)
T ss_dssp CEEEECBC
T ss_pred CEEEeeCc
Confidence 88888777
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.14 E-value=2.7e-11 Score=118.77 Aligned_cols=191 Identities=16% Similarity=0.098 Sum_probs=125.1
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.+..+.+...... ....+..+.+|+.|+++++ .+... + .+..+++|+.|+|++| .++... . ...+++|+
T Consensus 22 ~l~~l~l~~~~i~---~~~~~~~L~~L~~L~l~~n-~i~~l--~-~l~~l~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~ 90 (605)
T 1m9s_A 22 ETIKDNLKKKSVT---DAVTQNELNSIDQIIANNS-DIKSV--Q-GIQYLPNVTKLFLNGN-KLTDIK--P-LTNLKNLG 90 (605)
T ss_dssp HHHHHHTTCSCTT---SEECHHHHTTCCCCBCTTC-CCCCC--T-TGGGCTTCCEEECTTS-CCCCCG--G-GGGCTTCC
T ss_pred HHHHHhccCCCcc---cccchhcCCCCCEEECcCC-CCCCC--h-HHccCCCCCEEEeeCC-CCCCCh--h-hccCCCCC
Confidence 3455666655333 2233566778888888887 44432 2 2577888888888884 665432 2 34578888
Q ss_pred EEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceE
Q psy5339 95 ELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRAL 174 (479)
Q Consensus 95 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 174 (479)
+|+++++ .++... ....+++|+.|+++++. +... . -...+++|+.|+++++..... .....+++|+.|
T Consensus 91 ~L~Ls~N-~l~~l~---~l~~l~~L~~L~Ls~N~-l~~l--~-~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L 158 (605)
T 1m9s_A 91 WLFLDEN-KIKDLS---SLKDLKKLKSLSLEHNG-ISDI--N-GLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTL 158 (605)
T ss_dssp EEECCSS-CCCCCT---TSTTCTTCCEEECTTSC-CCCC--G-GGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEE
T ss_pred EEECcCC-CCCCCh---hhccCCCCCEEEecCCC-CCCC--c-cccCCCccCEEECCCCccCCc----hhhcccCCCCEE
Confidence 8888874 454421 23446788888888753 3321 1 145678899999988754332 223456899999
Q ss_pred EcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchh
Q psy5339 175 DIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVE 235 (479)
Q Consensus 175 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 235 (479)
+|++|.+..... ...+++|+.|+++++ .+... ..+..+++|+.|++++|.+...
T Consensus 159 ~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N-~i~~l---~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 159 SLEDNQISDIVP---LAGLTKLQNLYLSKN-HISDL---RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ECCSSCCCCCGG---GTTCTTCCEEECCSS-CCCBC---GGGTTCTTCSEEECCSEEEECC
T ss_pred ECcCCcCCCchh---hccCCCCCEEECcCC-CCCCC---hHHccCCCCCEEEccCCcCcCC
Confidence 999998765322 455899999999987 45432 2356789999999999986543
No 100
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.12 E-value=1.6e-11 Score=108.69 Aligned_cols=192 Identities=15% Similarity=0.097 Sum_probs=95.3
Q ss_pred CccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhcccc
Q psy5339 169 TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCC 248 (479)
Q Consensus 169 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 248 (479)
++|++|++.++.+... .. ...+++|+.|+++++. +... ..+..+++|++|++++|.+...
T Consensus 41 ~~L~~L~l~~~~i~~~--~~-l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~n~l~~~------------- 100 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QG-IQYLPNVRYLALGGNK-LHDI---SALKELTNLTYLILTGNQLQSL------------- 100 (272)
T ss_dssp TTCCEEECTTSCCCCC--TT-GGGCTTCCEEECTTSC-CCCC---GGGTTCTTCCEEECTTSCCCCC-------------
T ss_pred cceeeeeeCCCCcccc--cc-cccCCCCcEEECCCCC-CCCc---hhhcCCCCCCEEECCCCccCcc-------------
Confidence 6677777777665431 11 2336667777766653 3221 1234556666666666653211
Q ss_pred ccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCc
Q psy5339 249 IQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTD 328 (479)
Q Consensus 249 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 328 (479)
.. ..+..+++|+.|++++ +.+.......+. .+++|++|++++| .++.
T Consensus 101 -----------------------------~~-~~~~~l~~L~~L~L~~-n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~ 147 (272)
T 3rfs_A 101 -----------------------------PN-GVFDKLTNLKELVLVE-NQLQSLPDGVFD-KLTNLTYLNLAHN-QLQS 147 (272)
T ss_dssp -----------------------------CT-TTTTTCTTCCEEECTT-SCCCCCCTTTTT-TCTTCCEEECCSS-CCCC
T ss_pred -----------------------------Ch-hHhcCCcCCCEEECCC-CcCCccCHHHhc-cCCCCCEEECCCC-ccCc
Confidence 00 0112345555555555 334333222221 2355555555553 3332
Q ss_pred HHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHH
Q psy5339 329 FGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGL 408 (479)
Q Consensus 329 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 408 (479)
... .....+++|++|+++++ .++.... .....+++|+.|++++|. ++... ......+++|+.|++++|++..
T Consensus 148 ~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~~~~--- 219 (272)
T 3rfs_A 148 LPK-GVFDKLTNLTELDLSYN-QLQSLPE-GVFDKLTQLKDLRLYQNQ-LKSVP-DGVFDRLTSLQYIWLHDNPWDC--- 219 (272)
T ss_dssp CCT-TTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSSCBCC---
T ss_pred cCH-HHhccCccCCEEECCCC-CcCccCH-HHhcCCccCCEEECCCCc-CCccC-HHHHhCCcCCCEEEccCCCccc---
Confidence 111 11123345666666552 3332211 111245777777777754 32211 1122357888888888887652
Q ss_pred HHHHhhCCCCcEEeccCC
Q psy5339 409 RALAESCPNIKKLSLRQC 426 (479)
Q Consensus 409 ~~l~~~~~~L~~L~l~~~ 426 (479)
.+|+|+.+++..|
T Consensus 220 -----~~~~l~~l~~~~n 232 (272)
T 3rfs_A 220 -----TCPGIRYLSEWIN 232 (272)
T ss_dssp -----CTTTTHHHHHHHH
T ss_pred -----cCcHHHHHHHHHH
Confidence 3677877777766
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.09 E-value=3.3e-12 Score=110.80 Aligned_cols=153 Identities=14% Similarity=0.070 Sum_probs=64.6
Q ss_pred cCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCcc---EEeccccCCCChhHHHHHH
Q psy5339 285 NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLR---YLSVAKCDQVSDAGLKVIA 361 (479)
Q Consensus 285 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~~~l~~~~~~~~~ 361 (479)
.+++|+.|++++|+.+.......+. .+++|++|++++| .++.. .. ....++|+ +|+++++..++......+
T Consensus 78 ~l~~L~~L~l~~~n~l~~i~~~~f~-~l~~L~~L~l~~n-~l~~l--p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~- 151 (239)
T 2xwt_C 78 NLSKVTHIEIRNTRNLTYIDPDALK-ELPLLKFLGIFNT-GLKMF--PD-LTKVYSTDIFFILEITDNPYMTSIPVNAF- 151 (239)
T ss_dssp SCTTCCEEEEEEETTCCEECTTSEE-CCTTCCEEEEEEE-CCCSC--CC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-
T ss_pred CCcCCcEEECCCCCCeeEcCHHHhC-CCCCCCEEeCCCC-CCccc--cc-cccccccccccEEECCCCcchhhcCcccc-
Confidence 4555666666554444443333332 2355666666553 33321 11 12223444 555555323332211111
Q ss_pred HhCCCcc-EEeccCCCCccHHHHHHHHHhCCCCcEEEecCCC-CCHHHHHHHHhhC-CCCcEEeccCCcccchhhHHHHH
Q psy5339 362 RRCYKLR-YLNARGCEAVSDDAITVLARSCTRLRALDIGKCD-VSDAGLRALAESC-PNIKKLSLRQCDLVTDRGVQCIA 438 (479)
Q Consensus 362 ~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~-~~L~~L~l~~~~~l~~~~~~~~~ 438 (479)
..+++|+ .|+++++. ++.... ... ..++|++|++++|+ ++......+. .+ ++|+.|++++| .++.....
T Consensus 152 ~~l~~L~~~L~l~~n~-l~~i~~-~~~-~~~~L~~L~L~~n~~l~~i~~~~~~-~l~~~L~~L~l~~N-~l~~l~~~--- 223 (239)
T 2xwt_C 152 QGLCNETLTLKLYNNG-FTSVQG-YAF-NGTKLDAVYLNKNKYLTVIDKDAFG-GVYSGPSLLDVSQT-SVTALPSK--- 223 (239)
T ss_dssp TTTBSSEEEEECCSCC-CCEECT-TTT-TTCEEEEEECTTCTTCCEECTTTTT-TCSBCCSEEECTTC-CCCCCCCT---
T ss_pred cchhcceeEEEcCCCC-CcccCH-hhc-CCCCCCEEEcCCCCCcccCCHHHhh-ccccCCcEEECCCC-ccccCChh---
Confidence 1345555 66655543 221000 011 12456666666663 4432111122 24 56666666665 33332111
Q ss_pred HcCccccEEEeccc
Q psy5339 439 YYCRGLQQLNIQDC 452 (479)
Q Consensus 439 ~~~~~L~~L~l~~~ 452 (479)
.+++|+.|++.++
T Consensus 224 -~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 -GLEHLKELIARNT 236 (239)
T ss_dssp -TCTTCSEEECTTC
T ss_pred -HhccCceeeccCc
Confidence 3456666666554
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.09 E-value=1e-10 Score=114.64 Aligned_cols=169 Identities=19% Similarity=0.157 Sum_probs=124.9
Q ss_pred cccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcC
Q psy5339 11 PTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFC 90 (479)
Q Consensus 11 ~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 90 (479)
.....|+.|++++|.+..+ +.+..+++|+.|+|++| .+.... . +..+++|+.|++++| .++.. +. ...+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l---~~l~~l~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~Ls~N-~l~~l--~~-l~~l 108 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGN-KLTDIK--P-LTNLKNLGWLFLDEN-KIKDL--SS-LKDL 108 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC---TTGGGCTTCCEEECTTS-CCCCCG--G-GGGCTTCCEEECCSS-CCCCC--TT-STTC
T ss_pred hcCCCCCEEECcCCCCCCC---hHHccCCCCCEEEeeCC-CCCCCh--h-hccCCCCCEEECcCC-CCCCC--hh-hccC
Confidence 3455789999999965544 45788999999999998 555422 2 688999999999995 77652 33 3458
Q ss_pred CCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCc
Q psy5339 91 SQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTR 170 (479)
Q Consensus 91 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 170 (479)
++|++|+++++ .++.. . ....+++|+.|+++++. +... .....+++|+.|+++++....... ...+++
T Consensus 109 ~~L~~L~Ls~N-~l~~l--~-~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~ 176 (605)
T 1m9s_A 109 KKLKSLSLEHN-GISDI--N-GLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQISDIVP----LAGLTK 176 (605)
T ss_dssp TTCCEEECTTS-CCCCC--G-GGGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSSCCCCCGG----GTTCTT
T ss_pred CCCCEEEecCC-CCCCC--c-cccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCCcCCCchh----hccCCC
Confidence 99999999985 55542 1 24567999999999863 4332 234578999999999875433322 456799
Q ss_pred cceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCC
Q psy5339 171 LRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCD 205 (479)
Q Consensus 171 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 205 (479)
|+.|+|++|.+.+. .. ...+++|+.|+++++.
T Consensus 177 L~~L~Ls~N~i~~l--~~-l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 177 LQNLYLSKNHISDL--RA-LAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCEEECCSSCCCBC--GG-GTTCTTCSEEECCSEE
T ss_pred CCEEECcCCCCCCC--hH-HccCCCCCEEEccCCc
Confidence 99999999988763 22 3458999999999873
No 103
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.07 E-value=1.4e-11 Score=108.90 Aligned_cols=135 Identities=18% Similarity=0.161 Sum_probs=66.0
Q ss_pred cCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhC
Q psy5339 285 NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRC 364 (479)
Q Consensus 285 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 364 (479)
.+++|+.|++++ +.+.......+. .+++|++|+++++ .++..... ....+++|++|++++ +.++...... ...+
T Consensus 83 ~l~~L~~L~l~~-n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~-n~l~~~~~~~-~~~l 156 (270)
T 2o6q_A 83 ELKNLETLWVTD-NKLQALPIGVFD-QLVNLAELRLDRN-QLKSLPPR-VFDSLTKLTYLSLGY-NELQSLPKGV-FDKL 156 (270)
T ss_dssp SCTTCCEEECCS-SCCCCCCTTTTT-TCSSCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCS-SCCCCCCTTT-TTTC
T ss_pred CCCCCCEEECCC-CcCCcCCHhHcc-cccCCCEEECCCC-ccCeeCHH-HhCcCcCCCEEECCC-CcCCccCHhH-ccCC
Confidence 345555555555 334333222221 2245555555553 33321111 112334555555555 2333221111 1245
Q ss_pred CCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcc
Q psy5339 365 YKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDL 428 (479)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 428 (479)
++|++|++++|. ++.... .....+++|++|++++|.++......+ ..+++|+.|++++|+.
T Consensus 157 ~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 157 TSLKELRLYNNQ-LKRVPE-GAFDKLTELKTLKLDNNQLKRVPEGAF-DSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCB
T ss_pred cccceeEecCCc-CcEeCh-hHhccCCCcCEEECCCCcCCcCCHHHh-ccccCCCEEEecCCCe
Confidence 677777777653 221111 111246888888888888664322222 3478888999988863
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.06 E-value=9.1e-11 Score=93.40 Aligned_cols=132 Identities=20% Similarity=0.212 Sum_probs=75.8
Q ss_pred CCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCC
Q psy5339 286 CPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCY 365 (479)
Q Consensus 286 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 365 (479)
.++|+.|++++ +.+.+..+......+++|+.|++++| .++.. ... ..++
T Consensus 16 ~~~l~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~--------------------------~~l~ 64 (149)
T 2je0_A 16 PSDVKELVLDN-SRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANL--------------------------PKLN 64 (149)
T ss_dssp GGGCSEEECTT-CBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTC--------------------------CCCT
T ss_pred CccCeEEEccC-CcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhh--------------------------hcCC
Confidence 46788888888 45653333333344577777777774 44432 111 1345
Q ss_pred CccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhH--HHHHHcCcc
Q psy5339 366 KLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGV--QCIAYYCRG 443 (479)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~ 443 (479)
+|++|++++|.. +.. +......+++|++|++++|.+++.........+++|++|++++| .++.... ......+++
T Consensus 65 ~L~~L~Ls~n~i-~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 65 KLKKLELSDNRV-SGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp TCCEEECCSSCC-CSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTT
T ss_pred CCCEEECCCCcc-cch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCC
Confidence 666666666542 221 23333357778888888877776433222334788888888887 4554322 234556778
Q ss_pred ccEEEecc
Q psy5339 444 LQQLNIQD 451 (479)
Q Consensus 444 L~~L~l~~ 451 (479)
|+.|++++
T Consensus 142 L~~L~l~d 149 (149)
T 2je0_A 142 LTYLDGYD 149 (149)
T ss_dssp CCEETTBC
T ss_pred cccccCCC
Confidence 88877753
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.05 E-value=3.2e-12 Score=110.95 Aligned_cols=192 Identities=12% Similarity=0.089 Sum_probs=125.5
Q ss_pred ccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHH
Q psy5339 251 ISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFG 330 (479)
Q Consensus 251 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 330 (479)
+..++. ...++++|+++++ .+...... .+..+++|+.|+++++..++......+. .+++|++|++++|+.++...
T Consensus 23 l~~ip~--~~~~l~~L~l~~n-~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f~-~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIET-HLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSFY-NLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESC-CCSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTEE-SCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--CCCcccEEEEeCC-cceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHcC-CCcCCcEEECCCCCCeeEcC
Confidence 444444 3347999999985 44433222 2357899999999994337666554443 45899999999855666432
Q ss_pred HHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCcc---EEeccCCCCccHHHHHHHHHhCCCCc-EEEecCCCCCHH
Q psy5339 331 LYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLR---YLNARGCEAVSDDAITVLARSCTRLR-ALDIGKCDVSDA 406 (479)
Q Consensus 331 ~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~---~L~l~~~~~~~~~~~~~l~~~~~~L~-~L~l~~~~i~~~ 406 (479)
.. ....+++|++|+++++ .++... . ...+++|+ .|+++++..++..... ....+++|+ +|++++|+++..
T Consensus 98 ~~-~f~~l~~L~~L~l~~n-~l~~lp--~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 98 PD-ALKELPLLKFLGIFNT-GLKMFP--D-LTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp TT-SEECCTTCCEEEEEEE-CCCSCC--C-CTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSCCCCEE
T ss_pred HH-HhCCCCCCCEEeCCCC-CCcccc--c-cccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCCCCccc
Confidence 11 2234679999999984 344321 1 33567787 9999997344421111 123588999 999999997642
Q ss_pred HHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcC-ccccEEEecccccCh
Q psy5339 407 GLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC-RGLQQLNIQDCQISV 456 (479)
Q Consensus 407 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~i~~ 456 (479)
.... .. .++|++|++++|+.++..... .+..+ ++|+.|++++|+++.
T Consensus 172 ~~~~-~~-~~~L~~L~L~~n~~l~~i~~~-~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 172 QGYA-FN-GTKLDAVYLNKNKYLTVIDKD-AFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp CTTT-TT-TCEEEEEECTTCTTCCEECTT-TTTTCSBCCSEEECTTCCCCC
T ss_pred CHhh-cC-CCCCCEEEcCCCCCcccCCHH-HhhccccCCcEEECCCCcccc
Confidence 2221 22 378999999999646643322 23466 899999999999874
No 106
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.04 E-value=6.2e-09 Score=85.75 Aligned_cols=112 Identities=18% Similarity=0.185 Sum_probs=92.3
Q ss_pred HHHHHHHhCCCccEEeccCCCCccHHHHHHHH---HhCCCCcEEEecCCCCCHHHHHHHHh---hCCCCcEEeccCCccc
Q psy5339 356 GLKVIARRCYKLRYLNARGCEAVSDDAITVLA---RSCTRLRALDIGKCDVSDAGLRALAE---SCPNIKKLSLRQCDLV 429 (479)
Q Consensus 356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~l 429 (479)
.+.......++|++|++++|..+++.++..++ ...++|++|+|++|.+++++...+++ ..++|++|++++| .+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cC
Confidence 45556667899999999997578887766665 34689999999999999999887775 3588999999999 78
Q ss_pred chhhHHHHHH---cCccccEEEe--cccccChHHHHHHHHhhhh
Q psy5339 430 TDRGVQCIAY---YCRGLQQLNI--QDCQISVEGYRAVKKYCKR 468 (479)
Q Consensus 430 ~~~~~~~~~~---~~~~L~~L~l--~~~~i~~~~~~~l~~~~~~ 468 (479)
++.+...+.. ..++|++|++ ++|.++++++..+.+..+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~ 149 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEK 149 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHh
Confidence 9988776654 4578999999 8899999999888876543
No 107
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.03 E-value=7.8e-11 Score=105.04 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=17.8
Q ss_pred cCCCccEEEeccCCccCcchhccccccCCCCcEEeccC
Q psy5339 285 NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSD 322 (479)
Q Consensus 285 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~ 322 (479)
.+++|+.|++++ +.++......+. .+++|+.|++++
T Consensus 98 ~l~~L~~L~l~~-N~l~~l~~~~~~-~l~~L~~L~L~~ 133 (290)
T 1p9a_G 98 TLPALTVLDVSF-NRLTSLPLGALR-GLGELQELYLKG 133 (290)
T ss_dssp TCTTCCEEECCS-SCCCCCCSSTTT-TCTTCCEEECTT
T ss_pred cCCCCCEEECCC-CcCcccCHHHHc-CCCCCCEEECCC
Confidence 455566666655 344443322222 235566666655
No 108
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=5.7e-10 Score=88.73 Aligned_cols=83 Identities=25% Similarity=0.235 Sum_probs=53.6
Q ss_pred cccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcC
Q psy5339 259 TQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLG 338 (479)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 338 (479)
..++++.|+++++. +.+..+...+..+++|+.|++++ +.+... ..+ ..+++|+.|++++| .++.. +......+
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~--~~~-~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTIN-VGLTSI--ANL-PKLNKLKKLELSDN-RVSGG-LEVLAEKC 87 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTT-SCCCCC--TTC-CCCTTCCEEECCSS-CCCSC-THHHHHHC
T ss_pred CCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcC-CCCCCc--hhh-hcCCCCCEEECCCC-cccch-HHHHhhhC
Confidence 34679999999963 44222333446789999999999 567665 333 34589999999985 55542 22333334
Q ss_pred CCccEEeccc
Q psy5339 339 ATLRYLSVAK 348 (479)
Q Consensus 339 ~~L~~L~l~~ 348 (479)
++|++|++++
T Consensus 88 ~~L~~L~ls~ 97 (149)
T 2je0_A 88 PNLTHLNLSG 97 (149)
T ss_dssp TTCCEEECTT
T ss_pred CCCCEEECCC
Confidence 4566666655
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.00 E-value=4.3e-11 Score=97.51 Aligned_cols=136 Identities=20% Similarity=0.175 Sum_probs=80.4
Q ss_pred cCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhC
Q psy5339 285 NCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRC 364 (479)
Q Consensus 285 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 364 (479)
..++|+.|++++ +.+.+..+......+++|+.|++++| .++.. .... .+
T Consensus 22 ~~~~L~~L~l~~-n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~---~~~~--------------------------~l 70 (168)
T 2ell_A 22 TPAAVRELVLDN-CKSNDGKIEGLTAEFVNLEFLSLINV-GLISV---SNLP--------------------------KL 70 (168)
T ss_dssp CTTSCSEEECCS-CBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC---SSCC--------------------------CC
T ss_pred CcccCCEEECCC-CCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh---hhhc--------------------------cC
Confidence 346788888888 45653333333344578888888875 44432 1111 34
Q ss_pred CCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHH-HHHHHhhCCCCcEEeccCCcccchhhH--HHHHHcC
Q psy5339 365 YKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAG-LRALAESCPNIKKLSLRQCDLVTDRGV--QCIAYYC 441 (479)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~ 441 (479)
++|++|++++|..... +......+++|++|++++|.+++.. +..+ ..+++|+.|++++| .++.... ...+..+
T Consensus 71 ~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l-~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l 146 (168)
T 2ell_A 71 PKLKKLELSENRIFGG--LDMLAEKLPNLTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNC-EVTNLNDYRESVFKLL 146 (168)
T ss_dssp SSCCEEEEESCCCCSC--CCHHHHHCTTCCEEECBSSSCCSSGGGGGG-SSCSCCCEEECCSS-GGGTSTTHHHHHHTTC
T ss_pred CCCCEEECcCCcCchH--HHHHHhhCCCCCEEeccCCccCcchhHHHH-hcCCCCCEEEeeCC-cCcchHHHHHHHHHhC
Confidence 5666666666542211 2233335777888888888776532 2233 24788888888888 4444322 2345677
Q ss_pred ccccEEEecccccC
Q psy5339 442 RGLQQLNIQDCQIS 455 (479)
Q Consensus 442 ~~L~~L~l~~~~i~ 455 (479)
++|+.|++++|.+.
T Consensus 147 ~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 147 PQLTYLDGYDREDQ 160 (168)
T ss_dssp SSCCEETTEETTSC
T ss_pred ccCcEecCCCCChh
Confidence 88888888888754
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.98 E-value=2.1e-10 Score=100.69 Aligned_cols=56 Identities=20% Similarity=0.174 Sum_probs=24.9
Q ss_pred cccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccC
Q psy5339 259 TQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSD 322 (479)
Q Consensus 259 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~ 322 (479)
.+++|++|+++++ .+.... .+..+++|+.|++++ +.+.+... + ..+++|+.|++++
T Consensus 39 ~l~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~L~~-N~i~~~~~--l-~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 39 ELSGVQNFNGDNS-NIQSLA---GMQFFTNLKELHLSH-NQISDLSP--L-KDLTKLEELSVNR 94 (263)
T ss_dssp HHTTCSEEECTTS-CCCCCT---TGGGCTTCCEEECCS-SCCCCCGG--G-TTCSSCCEEECCS
T ss_pred hcCcCcEEECcCC-Ccccch---HHhhCCCCCEEECCC-CccCCChh--h-ccCCCCCEEECCC
Confidence 3444555555553 222211 123455555555555 34443322 1 2235555555555
No 111
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.97 E-value=8.4e-11 Score=102.68 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=40.9
Q ss_pred cceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCC
Q psy5339 261 LLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGAT 340 (479)
Q Consensus 261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 340 (479)
+.++.|+++++ .+....... +..+++|+.|++++ +.+.......+. .+++|+.|+++++ .++.... .....+++
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~-n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~ 108 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDAT-FRGLTKLTWLNLDY-NQLQTLSAGVFD-DLTELGTLGLANN-QLASLPL-GVFDHLTQ 108 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTT-TTTCTTCCEEECTT-SCCCCCCTTTTT-TCTTCCEEECTTS-CCCCCCT-TTTTTCTT
T ss_pred CCCCEEEccCC-CcCccCHhH-hcCcccCCEEECCC-CcCCccCHhHhc-cCCcCCEEECCCC-cccccCh-hHhcccCC
Confidence 35777777764 333222111 24567777777777 455554433332 2367777777764 4432211 11122345
Q ss_pred ccEEeccc
Q psy5339 341 LRYLSVAK 348 (479)
Q Consensus 341 L~~L~l~~ 348 (479)
|++|++++
T Consensus 109 L~~L~L~~ 116 (251)
T 3m19_A 109 LDKLYLGG 116 (251)
T ss_dssp CCEEECCS
T ss_pred CCEEEcCC
Confidence 55555554
No 112
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.96 E-value=1.2e-10 Score=101.66 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=98.8
Q ss_pred CCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCC
Q psy5339 287 PQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYK 366 (479)
Q Consensus 287 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 366 (479)
+.++.|++++ +.+.......+. .+++|++|+++++ .++.... ......++|++|++++ +.++..... ....+++
T Consensus 35 ~~l~~L~L~~-n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~-n~l~~~~~~-~~~~l~~ 108 (251)
T 3m19_A 35 ADTEKLDLQS-TGLATLSDATFR-GLTKLTWLNLDYN-QLQTLSA-GVFDDLTELGTLGLAN-NQLASLPLG-VFDHLTQ 108 (251)
T ss_dssp TTCCEEECTT-SCCCCCCTTTTT-TCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTT-SCCCCCCTT-TTTTCTT
T ss_pred CCCCEEEccC-CCcCccCHhHhc-CcccCCEEECCCC-cCCccCH-hHhccCCcCCEEECCC-CcccccChh-HhcccCC
Confidence 5788888888 566665544443 3478888888884 5554321 1223456888888887 445433221 1235688
Q ss_pred ccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccE
Q psy5339 367 LRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQ 446 (479)
Q Consensus 367 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 446 (479)
|++|+++++. ++... ......+++|++|++++|.++......+. .+++|++|++++| .++..... .+..+++|+.
T Consensus 109 L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~ 183 (251)
T 3m19_A 109 LDKLYLGGNQ-LKSLP-SGVFDRLTKLKELRLNTNQLQSIPAGAFD-KLTNLQTLSLSTN-QLQSVPHG-AFDRLGKLQT 183 (251)
T ss_dssp CCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCE
T ss_pred CCEEEcCCCc-CCCcC-hhHhccCCcccEEECcCCcCCccCHHHcC-cCcCCCEEECCCC-cCCccCHH-HHhCCCCCCE
Confidence 8888888864 33211 11123578888888888887643222232 4788888888888 45543221 2346688888
Q ss_pred EEecccccCh
Q psy5339 447 LNIQDCQISV 456 (479)
Q Consensus 447 L~l~~~~i~~ 456 (479)
|++++|+++-
T Consensus 184 L~l~~N~~~c 193 (251)
T 3m19_A 184 ITLFGNQFDC 193 (251)
T ss_dssp EECCSCCBCT
T ss_pred EEeeCCceeC
Confidence 8888888654
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.96 E-value=5.2e-10 Score=108.47 Aligned_cols=192 Identities=18% Similarity=0.150 Sum_probs=119.7
Q ss_pred CCCcEEEccCcccchhhhHHHHhhhccccccccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCc
Q psy5339 220 RGLQQLNIQDCQISVEGYRAVKKYCKRCCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVK 299 (479)
Q Consensus 220 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 299 (479)
.+++.|+++++.+.. ++.. ..++|++|+++++ .+.... ..+++|+.|++++ +.
T Consensus 59 ~~L~~L~Ls~n~L~~-------------------lp~~-l~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~-N~ 111 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-------------------LPDN-LPPQITVLEITQN-ALISLP-----ELPASLEYLDACD-NR 111 (571)
T ss_dssp TTCSEEECCSSCCSC-------------------CCSC-CCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCS-SC
T ss_pred CCccEEEeCCCCCCc-------------------cCHh-HcCCCCEEECcCC-CCcccc-----cccCCCCEEEccC-CC
Confidence 478888888877432 2211 1246888888884 444322 3478899999988 56
Q ss_pred cCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCcc
Q psy5339 300 LTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVS 379 (479)
Q Consensus 300 l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 379 (479)
++..+. +. .+|+.|++++| .++.. .. .+++|+.|++++ +.++.... .+++|+.|++++|. ++
T Consensus 112 l~~ip~--l~---~~L~~L~Ls~N-~l~~l--p~---~l~~L~~L~Ls~-N~l~~lp~-----~l~~L~~L~Ls~N~-L~ 173 (571)
T 3cvr_A 112 LSTLPE--LP---ASLKHLDVDNN-QLTML--PE---LPALLEYINADN-NQLTMLPE-----LPTSLEVLSVRNNQ-LT 173 (571)
T ss_dssp CSCCCC--CC---TTCCEEECCSS-CCSCC--CC---CCTTCCEEECCS-SCCSCCCC-----CCTTCCEEECCSSC-CS
T ss_pred CCCcch--hh---cCCCEEECCCC-cCCCC--CC---cCccccEEeCCC-CccCcCCC-----cCCCcCEEECCCCC-CC
Confidence 665322 22 38899999885 55541 11 467899999988 45543221 46789999998875 33
Q ss_pred HHHHHHHHHhCCCCcEEEecCCCCCHHHH-H-HHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccChH
Q psy5339 380 DDAITVLARSCTRLRALDIGKCDVSDAGL-R-ALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVE 457 (479)
Q Consensus 380 ~~~~~~l~~~~~~L~~L~l~~~~i~~~~~-~-~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 457 (479)
. +..+ .++|+.|++++|.++.... . .+....+.|+.|++++| .++... .....+++|+.|++++|+++..
T Consensus 174 ~--lp~l---~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp--~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 174 F--LPEL---PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN-RITHIP--ENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp C--CCCC---CTTCCEEECCSSCCSSCCCCC--------CCEEEECCSS-CCCCCC--GGGGGSCTTEEEECCSSSCCHH
T ss_pred C--cchh---hCCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCC-cceecC--HHHhcCCCCCEEEeeCCcCCCc
Confidence 2 2221 2789999999998763111 0 11111223399999998 566422 1123478999999999998877
Q ss_pred HHHHHHH
Q psy5339 458 GYRAVKK 464 (479)
Q Consensus 458 ~~~~l~~ 464 (479)
....+..
T Consensus 246 ~p~~l~~ 252 (571)
T 3cvr_A 246 IRESLSQ 252 (571)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 6666654
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.92 E-value=2.8e-10 Score=99.86 Aligned_cols=170 Identities=14% Similarity=0.087 Sum_probs=105.4
Q ss_pred ccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCC
Q psy5339 12 TQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCS 91 (479)
Q Consensus 12 ~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 91 (479)
....+..++++++.+.++. .+..+++|++|++++| .+... + .+..+++|++|++++ +.+++.. . ...++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n-~i~~l--~-~l~~l~~L~~L~L~~-N~i~~~~--~-l~~l~ 85 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNS-NIQSL--A-GMQFFTNLKELHLSH-NQISDLS--P-LKDLT 85 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTS-CCCCC--T-TGGGCTTCCEEECCS-SCCCCCG--G-GTTCS
T ss_pred HHHHHHHHHhcCCCccccc---chhhcCcCcEEECcCC-Ccccc--h-HHhhCCCCCEEECCC-CccCCCh--h-hccCC
Confidence 4445777888887544433 4677888899999887 55542 2 357788899999988 4666533 2 44578
Q ss_pred CCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCcc
Q psy5339 92 QLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRL 171 (479)
Q Consensus 92 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 171 (479)
+|++|+++++ .++... .+.. ++| ++|+++++....... ...+++|
T Consensus 86 ~L~~L~L~~N-~l~~l~--~~~~--~~L--------------------------~~L~L~~N~l~~~~~----l~~l~~L 130 (263)
T 1xeu_A 86 KLEELSVNRN-RLKNLN--GIPS--ACL--------------------------SRLFLDNNELRDTDS----LIHLKNL 130 (263)
T ss_dssp SCCEEECCSS-CCSCCT--TCCC--SSC--------------------------CEEECCSSCCSBSGG----GTTCTTC
T ss_pred CCCEEECCCC-ccCCcC--cccc--Ccc--------------------------cEEEccCCccCCChh----hcCcccc
Confidence 8888888874 444311 1101 344 444444442221111 2234677
Q ss_pred ceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccch
Q psy5339 172 RALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISV 234 (479)
Q Consensus 172 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 234 (479)
++|++++|++++. . ....+++|+.|+++++ .+... ..+..+++|+.|++++|.+..
T Consensus 131 ~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 131 EILSIRNNKLKSI--V-MLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CEEECTTSCCCBC--G-GGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEEEEC
T ss_pred cEEECCCCcCCCC--h-HHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCcccC
Confidence 7777777776553 1 2344788888888877 34333 335578899999999988653
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.87 E-value=9.5e-10 Score=89.45 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=20.9
Q ss_pred hCCccceeeccCccccchhHH-HHHHHhcCccceEEcCCccc
Q psy5339 141 RCYKLRYLNARGCEAVSDDAI-TVLARSCTRLRALDIGKCDV 181 (479)
Q Consensus 141 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 181 (479)
.+++|++|+++++........ ......+++|++|+++++.+
T Consensus 118 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 118 KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 456666666665543222111 12344456677776666653
No 116
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.85 E-value=3.3e-11 Score=110.82 Aligned_cols=92 Identities=17% Similarity=0.084 Sum_probs=52.9
Q ss_pred cccCcccc--hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHh
Q psy5339 7 LTASPTQL--LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIK 84 (479)
Q Consensus 7 ~~~~~~~~--~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 84 (479)
++++|... .+++|+|++|.+..+. ...|..+++|++|+|++|...+... ...+.++++++++.+.++++++....
T Consensus 21 Lt~iP~~l~~~l~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~l~~- 97 (350)
T 4ay9_X 21 VTEIPSDLPRNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINP- 97 (350)
T ss_dssp CCSCCTTCCTTCSEEEEESCCCSEEC-TTSSTTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCEECT-
T ss_pred CCccCcCcCCCCCEEEccCCcCCCcC-HHHHcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccccCc-
Confidence 34555433 5788888888655433 2346777888888888773222111 12345667766655544456654322
Q ss_pred hhhhcCCCCcEEEeecC
Q psy5339 85 YVPSFCSQLKELSVSDC 101 (479)
Q Consensus 85 ~~~~~~~~L~~L~l~~~ 101 (479)
.....+++|++|+++++
T Consensus 98 ~~f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNT 114 (350)
T ss_dssp TSBCCCTTCCEEEEEEE
T ss_pred hhhhhcccccccccccc
Confidence 22345677888888763
No 117
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.81 E-value=2.7e-07 Score=75.19 Aligned_cols=127 Identities=13% Similarity=0.160 Sum_probs=92.8
Q ss_pred HHHHHHHcCCCccEEeccccCCCChhHHHHHHHh---CCCccEEeccCCCCccHHHHH---HHHHhCCCCcEEEecCCCC
Q psy5339 330 GLYELAKLGATLRYLSVAKCDQVSDAGLKVIARR---CYKLRYLNARGCEAVSDDAIT---VLARSCTRLRALDIGKCDV 403 (479)
Q Consensus 330 ~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~---~l~~~~~~L~~L~l~~~~i 403 (479)
.+..+....+.|++|++++++.+.+.+...++.. -+.|+.|++++| .+++.+.. ...+..+.|++|+|++|.|
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 3445555566788888876457777777666543 368999999886 47776644 3445678999999999999
Q ss_pred CHHHHHHHHhhC---CCCcEEeccCCc--ccchhhH---HHHHHcCccccEEEecccccChH
Q psy5339 404 SDAGLRALAESC---PNIKKLSLRQCD--LVTDRGV---QCIAYYCRGLQQLNIQDCQISVE 457 (479)
Q Consensus 404 ~~~~~~~l~~~~---~~L~~L~l~~~~--~l~~~~~---~~~~~~~~~L~~L~l~~~~i~~~ 457 (479)
++++...+++.+ ..|++|+++++. .+.+.+. ......-++|+.|+++.+.+...
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~~ 172 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEAR 172 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHHH
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccHH
Confidence 999999999865 459999998763 3566543 33445668999999998876543
No 118
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.81 E-value=1e-10 Score=107.56 Aligned_cols=180 Identities=11% Similarity=0.054 Sum_probs=77.9
Q ss_pred CccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEc-cCcccchhhhHHHHhhhccc
Q psy5339 169 TRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNI-QDCQISVEGYRAVKKYCKRC 247 (479)
Q Consensus 169 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~~~~~~~~l~~~~~~~ 247 (479)
+++++|++++|+++..... ....+++|+.|+++++...... ....+..+++++++.+ .++.+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~-~f~~l~~L~~L~Ls~N~i~~~i-~~~~f~~L~~l~~~l~~~~N~l--------------- 92 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNL--------------- 92 (350)
T ss_dssp TTCSEEEEESCCCSEECTT-SSTTCTTCCEEEEECCTTCCEE-CTTSBCSCTTCCEEEEEEETTC---------------
T ss_pred CCCCEEEccCCcCCCcCHH-HHcCCCCCCEEECcCCCCCCcc-ChhHhhcchhhhhhhcccCCcc---------------
Confidence 4677888887776532111 1233667777777765322111 1112234555554333 33332
Q ss_pred cccccccc--cCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCC
Q psy5339 248 CIQISCLT--ASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQ 325 (479)
Q Consensus 248 ~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 325 (479)
..++ .....++|++|+++++ .+....... .....++..+++.+++.+.......+......++.|+++++ .
T Consensus 93 ----~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~-~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~ 165 (350)
T 4ay9_X 93 ----LYINPEAFQNLPNLQYLLISNT-GIKHLPDVH-KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-G 165 (350)
T ss_dssp ----CEECTTSBCCCTTCCEEEEEEE-CCSSCCCCT-TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-C
T ss_pred ----cccCchhhhhcccccccccccc-ccccCCchh-hcccchhhhhhhccccccccccccchhhcchhhhhhccccc-c
Confidence 2221 1123345666666653 222111000 11233455555555444544443333333245666666663 4
Q ss_pred CCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCC
Q psy5339 326 VTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGC 375 (479)
Q Consensus 326 ~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 375 (479)
++..... .....+|+++.+.+++.++...... ...+++|+.|+++++
T Consensus 166 i~~i~~~--~f~~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 166 IQEIHNS--AFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRT 212 (350)
T ss_dssp CCEECTT--SSTTEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTTS
T ss_pred ccCCChh--hccccchhHHhhccCCcccCCCHHH-hccCcccchhhcCCC
Confidence 4431111 1112355666665444443322111 123455666666654
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.80 E-value=2.4e-09 Score=103.82 Aligned_cols=192 Identities=18% Similarity=0.109 Sum_probs=129.5
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.++.|++++|.+..++.. + +++|++|++++| .+.. ++ ..+++|++|++++ +.++. ++.+ ..+|+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~--l--~~~L~~L~Ls~N-~l~~--ip---~~l~~L~~L~Ls~-N~l~~--ip~l---~~~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDN--L--PPQITVLEITQN-ALIS--LP---ELPASLEYLDACD-NRLST--LPEL---PASLK 123 (571)
T ss_dssp TCSEEECCSSCCSCCCSC--C--CTTCSEEECCSS-CCSC--CC---CCCTTCCEEECCS-SCCSC--CCCC---CTTCC
T ss_pred CccEEEeCCCCCCccCHh--H--cCCCCEEECcCC-CCcc--cc---cccCCCCEEEccC-CCCCC--cchh---hcCCC
Confidence 689999999965543321 2 378999999998 5653 33 5679999999999 47765 3332 23899
Q ss_pred EEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceE
Q psy5339 95 ELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRAL 174 (479)
Q Consensus 95 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 174 (479)
+|+++++ .++.. +. .+++|+.|+++++ .++. ++. .+++|+.|+++++....... + .++|+.|
T Consensus 124 ~L~Ls~N-~l~~l--p~---~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~L~~lp~---l---~~~L~~L 185 (571)
T 3cvr_A 124 HLDVDNN-QLTML--PE---LPALLEYINADNN-QLTM--LPE---LPTSLEVLSVRNNQLTFLPE---L---PESLEAL 185 (571)
T ss_dssp EEECCSS-CCSCC--CC---CCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSCCSCCCC---C---CTTCCEE
T ss_pred EEECCCC-cCCCC--CC---cCccccEEeCCCC-ccCc--CCC---cCCCcCEEECCCCCCCCcch---h---hCCCCEE
Confidence 9999984 56542 22 5789999999985 3332 111 56899999999875332111 2 1799999
Q ss_pred EcCCcccCHHHH--HHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhh
Q psy5339 175 DIGKCDVSDAGL--RALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKY 243 (479)
Q Consensus 175 ~l~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 243 (479)
++++|.++.... ..+....+.|+.|+++++ .++. ++..+..+++|+.|++++|.+.......+..+
T Consensus 186 ~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 186 DVSTNLLESLPAVPVRNHHSEETEIFFRCREN-RITH--IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp ECCSSCCSSCCCCC--------CCEEEECCSS-CCCC--CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ECcCCCCCchhhHHHhhhcccccceEEecCCC-ccee--cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 999998763111 011111233499999987 4542 33334468999999999999988776666654
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.76 E-value=6.4e-10 Score=94.74 Aligned_cols=152 Identities=12% Similarity=0.071 Sum_probs=71.8
Q ss_pred eeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCcc
Q psy5339 263 LQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLR 342 (479)
Q Consensus 263 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 342 (479)
-+.++++++ .+... +. ...+.++.|++++ +.++..........+++|+.|+++++ .++..... .....++|+
T Consensus 13 ~~~l~~s~n-~l~~i--P~--~~~~~~~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~-~~~~l~~L~ 84 (220)
T 2v70_A 13 GTTVDCSNQ-KLNKI--PE--HIPQYTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEG-AFEGASGVN 84 (220)
T ss_dssp TTEEECCSS-CCSSC--CS--CCCTTCSEEECCS-SCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTT-TTTTCTTCC
T ss_pred CCEeEeCCC-CcccC--cc--CCCCCCCEEEcCC-CcCCccCchhhhccCCCCCEEECCCC-cCCEECHH-HhCCCCCCC
Confidence 356777663 33321 10 1134677888888 56666543333344578888888874 55542211 122344666
Q ss_pred EEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEe
Q psy5339 343 YLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLS 422 (479)
Q Consensus 343 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~ 422 (479)
+|++++ +.++...... ...+++|++|++++|. ++... ......+++|++|++++|.++......+. .+++|+.|+
T Consensus 85 ~L~Ls~-N~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~ 159 (220)
T 2v70_A 85 EILLTS-NRLENVQHKM-FKGLESLKTLMLRSNR-ITCVG-NDSFIGLSSVRLLSLYDNQITTVAPGAFD-TLHSLSTLN 159 (220)
T ss_dssp EEECCS-SCCCCCCGGG-GTTCSSCCEEECTTSC-CCCBC-TTSSTTCTTCSEEECTTSCCCCBCTTTTT-TCTTCCEEE
T ss_pred EEECCC-CccCccCHhH-hcCCcCCCEEECCCCc-CCeEC-HhHcCCCccCCEEECCCCcCCEECHHHhc-CCCCCCEEE
Confidence 666666 3333221111 1244556666665543 22100 00111345555555555554432112222 245555555
Q ss_pred ccCCc
Q psy5339 423 LRQCD 427 (479)
Q Consensus 423 l~~~~ 427 (479)
+++|+
T Consensus 160 L~~N~ 164 (220)
T 2v70_A 160 LLANP 164 (220)
T ss_dssp CCSCC
T ss_pred ecCcC
Confidence 55553
No 121
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.70 E-value=2.5e-07 Score=75.36 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=90.6
Q ss_pred hHHHHHHHhCCCccEEeccCCCCccHHHHHHHH---HhCCCCcEEEecCCCCCHHHHHHHHh---hCCCCcEEeccCCcc
Q psy5339 355 AGLKVIARRCYKLRYLNARGCEAVSDDAITVLA---RSCTRLRALDIGKCDVSDAGLRALAE---SCPNIKKLSLRQCDL 428 (479)
Q Consensus 355 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~ 428 (479)
..+..+...-+.|++|+++++..+.+.+...++ +..+.|+.|+|++|.++|.+...+++ ....|++|+|++| .
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~ 109 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-F 109 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-B
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-c
Confidence 346666667789999999986678888766655 44679999999999999999888886 3577999999999 7
Q ss_pred cchhhHHHHHHcC---ccccEEEeccc---ccChHHHHHHHHhhh
Q psy5339 429 VTDRGVQCIAYYC---RGLQQLNIQDC---QISVEGYRAVKKYCK 467 (479)
Q Consensus 429 l~~~~~~~~~~~~---~~L~~L~l~~~---~i~~~~~~~l~~~~~ 467 (479)
|++.|...+...+ +.|++|++++| .+++.+..++.+...
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~ 154 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE 154 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHH
Confidence 8998888776543 57999999875 679988887776553
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.69 E-value=1.1e-08 Score=83.71 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=34.8
Q ss_pred hCCCCcEEEecCCCCCHHH-HHHHHhhCCCCcEEeccCCcccchhh--HHHHHHcCccccEEEecccccC
Q psy5339 389 SCTRLRALDIGKCDVSDAG-LRALAESCPNIKKLSLRQCDLVTDRG--VQCIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 389 ~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~L~l~~~~i~ 455 (479)
.+++|++|++++|.+++.. +..+. .+++|+.|++++|+ ++... .......+++|+.|++++|.+.
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLA-SLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGG-GCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCCCCCEEECCCCcCCcchhhHhhh-cCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 4666666666666654321 11222 36667777777663 33211 1123455677777777766654
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.67 E-value=1.5e-09 Score=91.71 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=19.0
Q ss_pred hCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCc
Q psy5339 389 SCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCD 427 (479)
Q Consensus 389 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 427 (479)
.+++|++|++++|.+++.....+ ..+++|++|++++|+
T Consensus 122 ~l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 122 KLTQLKDLRLYQNQLKSVPDGVF-DRLTSLQYIWLHDNP 159 (208)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSCC
T ss_pred cCCcCCEEECCCCccceeCHHHh-ccCCCccEEEecCCC
Confidence 35566666666665443211111 235566666666663
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.67 E-value=3.1e-09 Score=98.01 Aligned_cols=64 Identities=11% Similarity=0.156 Sum_probs=31.3
Q ss_pred hCCCCcEEEecCCCCCHHHHHHHH--hhCCCCcEEeccCCcccchhhHHHHHHcCcc--ccEEEeccccc
Q psy5339 389 SCTRLRALDIGKCDVSDAGLRALA--ESCPNIKKLSLRQCDLVTDRGVQCIAYYCRG--LQQLNIQDCQI 454 (479)
Q Consensus 389 ~~~~L~~L~l~~~~i~~~~~~~l~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~--L~~L~l~~~~i 454 (479)
.+++|++|+|++|.++......+. ..+++|+.|++++| .++......+ ..++. ++.|++++|++
T Consensus 134 ~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~-~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDL-QKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHH-HHSCHHHHTTEECCSSCE
T ss_pred CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHh-hhccHhhcceEEecCCCc
Confidence 356666666666665432111110 13566666666666 4444333222 23344 35666666664
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.66 E-value=6.8e-10 Score=108.21 Aligned_cols=87 Identities=13% Similarity=0.125 Sum_probs=40.6
Q ss_pred HhCCccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhC
Q psy5339 140 RRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC 219 (479)
Q Consensus 140 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 219 (479)
..+++|+.|+++++.... +......+++|+.|++++|.++. +. -...+++|+.|+++++ .++....+..+..+
T Consensus 460 ~~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l 532 (567)
T 1dce_A 460 EQLLLVTHLDLSHNRLRA---LPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSC 532 (567)
T ss_dssp GGGTTCCEEECCSSCCCC---CCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGC
T ss_pred cccccCcEeecCcccccc---cchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcC
Confidence 344555555555543221 11112234566666666665543 12 1233556666666655 23222112233455
Q ss_pred CCCcEEEccCcccc
Q psy5339 220 RGLQQLNIQDCQIS 233 (479)
Q Consensus 220 ~~L~~L~l~~~~~~ 233 (479)
++|+.|++++|.+.
T Consensus 533 ~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 533 PRLVLLNLQGNSLC 546 (567)
T ss_dssp TTCCEEECTTSGGG
T ss_pred CCCCEEEecCCcCC
Confidence 66666666666543
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.64 E-value=2.6e-09 Score=90.92 Aligned_cols=132 Identities=11% Similarity=0.115 Sum_probs=62.6
Q ss_pred CCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCC
Q psy5339 287 PQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYK 366 (479)
Q Consensus 287 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 366 (479)
++++.|++++ +.+.......+.. +++|+.|+++++ .++...... ....++|++|++++ +.++.... .....+++
T Consensus 32 ~~l~~L~l~~-n~i~~i~~~~~~~-l~~L~~L~Ls~N-~i~~~~~~~-~~~l~~L~~L~Ls~-N~l~~l~~-~~f~~l~~ 105 (220)
T 2v9t_B 32 ETITEIRLEQ-NTIKVIPPGAFSP-YKKLRRIDLSNN-QISELAPDA-FQGLRSLNSLVLYG-NKITELPK-SLFEGLFS 105 (220)
T ss_dssp TTCCEEECCS-SCCCEECTTSSTT-CTTCCEEECCSS-CCCEECTTT-TTTCSSCCEEECCS-SCCCCCCT-TTTTTCTT
T ss_pred cCCCEEECCC-CcCCCcCHhHhhC-CCCCCEEECCCC-cCCCcCHHH-hhCCcCCCEEECCC-CcCCccCH-hHccCCCC
Confidence 5788888888 5676655444433 478888888884 554321111 22334666666665 33332111 11123455
Q ss_pred ccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCc
Q psy5339 367 LRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCD 427 (479)
Q Consensus 367 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 427 (479)
|+.|++++|. ++.... .....+++|++|++++|.++......+. .+++|+.|++++|+
T Consensus 106 L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 106 LQLLLLNANK-INCLRV-DAFQDLHNLNLLSLYDNKLQTIAKGTFS-PLRAIQTMHLAQNP 163 (220)
T ss_dssp CCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSC
T ss_pred CCEEECCCCC-CCEeCH-HHcCCCCCCCEEECCCCcCCEECHHHHh-CCCCCCEEEeCCCC
Confidence 5555555542 221000 0111345555555555554332211111 24455555555553
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.63 E-value=1.9e-08 Score=82.33 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=21.8
Q ss_pred hCCccceeeccCccccchhH-HHHHHHhcCccceEEcCCcccCH
Q psy5339 141 RCYKLRYLNARGCEAVSDDA-ITVLARSCTRLRALDIGKCDVSD 183 (479)
Q Consensus 141 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~ 183 (479)
.+++|+.|+++++....... ...+...+++|+.|+++++...+
T Consensus 111 ~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 111 SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 45566666665554321111 11233455777777777666444
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.63 E-value=1.5e-08 Score=93.43 Aligned_cols=164 Identities=17% Similarity=0.138 Sum_probs=108.0
Q ss_pred cceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCC
Q psy5339 261 LLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGAT 340 (479)
Q Consensus 261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 340 (479)
..++.|+++++ .+.......+...+++|+.|++++ +.+.......+. .+++|++|++++| .++.... .....+++
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~-~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFV-PVPNLRYLDLSSN-HLHTLDE-FLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTT-TCTTCCEEECCSS-CCCEECT-TTTTTCTT
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCC-CcCCccChhhcc-CCCCCCEEECCCC-cCCcCCH-HHhCCCcC
Confidence 35899999984 554433222212689999999999 678776655554 3489999999995 6664322 12334579
Q ss_pred ccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHH--HHhCCCCcEEEecCCCCCHHHHHHHHhhCCC-
Q psy5339 341 LRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVL--ARSCTRLRALDIGKCDVSDAGLRALAESCPN- 417 (479)
Q Consensus 341 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~- 417 (479)
|+.|++++ +.++...... ...+++|+.|++++|. ++......+ ...+++|+.|+|++|.++......+.. +++
T Consensus 114 L~~L~L~~-N~i~~~~~~~-~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-l~~~ 189 (361)
T 2xot_A 114 LEVLLLYN-NHIVVVDRNA-FEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK-LPAW 189 (361)
T ss_dssp CCEEECCS-SCCCEECTTT-TTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH-SCHH
T ss_pred CCEEECCC-CcccEECHHH-hCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh-ccHh
Confidence 99999998 5565432222 2367899999999965 332111111 135899999999999987654444543 676
Q ss_pred -CcEEeccCCcccchhh
Q psy5339 418 -IKKLSLRQCDLVTDRG 433 (479)
Q Consensus 418 -L~~L~l~~~~~l~~~~ 433 (479)
++.|++.+|+.--+..
T Consensus 190 ~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 190 VKNGLYLHNNPLECDCK 206 (361)
T ss_dssp HHTTEECCSSCEECCHH
T ss_pred hcceEEecCCCccCCcC
Confidence 4889999996544433
No 129
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.62 E-value=6.7e-09 Score=89.02 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=32.1
Q ss_pred CCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccc
Q psy5339 286 CPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAK 348 (479)
Q Consensus 286 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 348 (479)
.++|+.|++++ +.+.......+. .+++|+.|+++++ .++.... .....+++|++|++++
T Consensus 39 ~~~L~~L~Ls~-n~i~~~~~~~~~-~l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 39 PTNAQILYLHD-NQITKLEPGVFD-SLINLKELYLGSN-QLGALPV-GVFDSLTQLTVLDLGT 97 (229)
T ss_dssp CTTCSEEECCS-SCCCCCCTTTTT-TCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCS
T ss_pred CCCCCEEEcCC-CccCccCHHHhh-CccCCcEEECCCC-CCCCcCh-hhcccCCCcCEEECCC
Confidence 36777888877 566554433333 2367777777774 4433211 1122344566666655
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.62 E-value=2.6e-09 Score=89.37 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=52.0
Q ss_pred CCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHH-HHHHhhCCCCcEEeccCCcccchh---------h
Q psy5339 364 CYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGL-RALAESCPNIKKLSLRQCDLVTDR---------G 433 (479)
Q Consensus 364 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~-~~l~~~~~~L~~L~l~~~~~l~~~---------~ 433 (479)
+++|+.|++++|. ++. +..+ ..+++|++|++++|.+++... ..+. .+++|++|++++|+ ++.. .
T Consensus 92 ~~~L~~L~L~~N~-l~~--l~~~-~~l~~L~~L~l~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~-l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 92 ADTLEELWISYNQ-IAS--LSGI-EKLVNLRVLYMSNNKITNWGEIDKLA-ALDKLEDLLLAGNP-LYNDYKENNATSEY 165 (198)
T ss_dssp HHHCSEEEEEEEE-CCC--HHHH-HHHHHSSEEEESEEECCCHHHHHHHT-TTTTCSEEEECSCH-HHHHHHTTTTHHHH
T ss_pred CCcCCEEECcCCc-CCc--CCcc-ccCCCCCEEECCCCcCCchhHHHHHh-cCCCCCEEEecCCc-cccccccccchHHH
Confidence 3567777777653 332 2222 246778888888888776432 3343 47888888888884 3322 1
Q ss_pred HHHHHHcCccccEEEecccccChH
Q psy5339 434 VQCIAYYCRGLQQLNIQDCQISVE 457 (479)
Q Consensus 434 ~~~~~~~~~~L~~L~l~~~~i~~~ 457 (479)
.......+++|+.|+ ++++++.
T Consensus 166 ~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp HHHHHHHCSSCSEEC--CGGGTTT
T ss_pred HHHHHHhCCCcEEEC--CcccCHH
Confidence 123356778888886 6666543
No 131
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.58 E-value=7.7e-09 Score=87.30 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=57.9
Q ss_pred hCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCc
Q psy5339 363 RCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCR 442 (479)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 442 (479)
.+++|++|++++|. ++... ......+++|++|++++|.++......+ ..+++|++|++++| .++.... ..+..++
T Consensus 74 ~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~ 148 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQ-LQSLP-NGVFDKLTQLKELALNTNQLQSLPDGVF-DKLTQLKDLRLYQN-QLKSVPD-GVFDRLT 148 (208)
T ss_dssp TCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCT-TTTTTCT
T ss_pred CCCCcCEEECCCCc-CCccC-HhHhcCccCCCEEEcCCCcCcccCHhHh-ccCCcCCEEECCCC-ccceeCH-HHhccCC
Confidence 45677777777653 22110 1112357899999999998764322222 35899999999999 5554322 2235679
Q ss_pred cccEEEecccccC
Q psy5339 443 GLQQLNIQDCQIS 455 (479)
Q Consensus 443 ~L~~L~l~~~~i~ 455 (479)
+|+.|++++|++.
T Consensus 149 ~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 149 SLQYIWLHDNPWD 161 (208)
T ss_dssp TCCEEECCSCCBC
T ss_pred CccEEEecCCCee
Confidence 9999999999855
No 132
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.56 E-value=1e-08 Score=87.25 Aligned_cols=132 Identities=10% Similarity=0.079 Sum_probs=57.1
Q ss_pred ceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCc
Q psy5339 262 LLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATL 341 (479)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 341 (479)
+++.|+++++ .+...... .+..+++|+.|++++ +.+.......+.. +++|++|+++++ .++... .......++|
T Consensus 33 ~l~~L~l~~n-~i~~i~~~-~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~-l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L 106 (220)
T 2v9t_B 33 TITEIRLEQN-TIKVIPPG-AFSPYKKLRRIDLSN-NQISELAPDAFQG-LRSLNSLVLYGN-KITELP-KSLFEGLFSL 106 (220)
T ss_dssp TCCEEECCSS-CCCEECTT-SSTTCTTCCEEECCS-SCCCEECTTTTTT-CSSCCEEECCSS-CCCCCC-TTTTTTCTTC
T ss_pred CCCEEECCCC-cCCCcCHh-HhhCCCCCCEEECCC-CcCCCcCHHHhhC-CcCCCEEECCCC-cCCccC-HhHccCCCCC
Confidence 4666666553 23221111 123455666666665 4454443333322 356666666653 443211 1112233456
Q ss_pred cEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCC
Q psy5339 342 RYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDV 403 (479)
Q Consensus 342 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i 403 (479)
++|++++ +.++...... ...+++|+.|++++|. ++.... .....+++|+.|++++|++
T Consensus 107 ~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 107 QLLLLNA-NKINCLRVDA-FQDLHNLNLLSLYDNK-LQTIAK-GTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSCE
T ss_pred CEEECCC-CCCCEeCHHH-cCCCCCCCEEECCCCc-CCEECH-HHHhCCCCCCEEEeCCCCc
Confidence 6666665 3333221111 1234566666666543 221000 1112355566666666653
No 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.54 E-value=1.9e-08 Score=85.60 Aligned_cols=133 Identities=16% Similarity=0.113 Sum_probs=62.2
Q ss_pred ceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCc
Q psy5339 262 LLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATL 341 (479)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 341 (479)
.+++|+++++ .+........+..+++|+.|++++ +.++......+. .+++|+.|++++| .++..... ....+++|
T Consensus 33 ~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L 107 (220)
T 2v70_A 33 YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFE-GASGVNEILLTSN-RLENVQHK-MFKGLESL 107 (220)
T ss_dssp TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTTTT-TCTTCCEEECCSS-CCCCCCGG-GGTTCSSC
T ss_pred CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCC-CcCCEECHHHhC-CCCCCCEEECCCC-ccCccCHh-HhcCCcCC
Confidence 3566666663 333221111124566666666666 455544333332 2366666666663 44332111 12234566
Q ss_pred cEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCC
Q psy5339 342 RYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDV 403 (479)
Q Consensus 342 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i 403 (479)
++|++++ +.++......+ ..+++|+.|++++|. ++... ......+++|+.|++++|++
T Consensus 108 ~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 108 KTLMLRS-NRITCVGNDSF-IGLSSVRLLSLYDNQ-ITTVA-PGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CEEECTT-SCCCCBCTTSS-TTCTTCSEEECTTSC-CCCBC-TTTTTTCTTCCEEECCSCCE
T ss_pred CEEECCC-CcCCeECHhHc-CCCccCCEEECCCCc-CCEEC-HHHhcCCCCCCEEEecCcCC
Confidence 6666666 33332211111 245666666666643 22110 11112456666666666664
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.53 E-value=5.2e-09 Score=95.24 Aligned_cols=196 Identities=13% Similarity=0.139 Sum_probs=108.5
Q ss_pred ccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCC----------------
Q psy5339 260 QLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDC---------------- 323 (479)
Q Consensus 260 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~---------------- 323 (479)
.++|+++.+.+ .+...+-.. +.+|++|+.+++.+ +.+...+...+.. +.++..+.....
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~a-F~~~~~L~~l~l~~-n~i~~i~~~aF~~-~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAA-FKGCDNLKICQIRK-KTAPNLLPEALAD-SVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTT-TTTCTTCCEEEBCC-SSCCEECTTSSCT-TTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cCCCcEEECCc--cccchhHHH-hhcCcccceEEcCC-CCccccchhhhcC-CCceEEecCcchhhhhcccccccccccc
Confidence 45678887776 233222211 35788999999887 5554444333322 234444433220
Q ss_pred -CCCC-------cHHHHH-HHH---cCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCC
Q psy5339 324 -TQVT-------DFGLYE-LAK---LGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCT 391 (479)
Q Consensus 324 -~~~~-------~~~~~~-l~~---~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 391 (479)
..+. ...+.. +.. ...++..+.+.+ .+....+..+...|++|+.+++.++. ++..+- .....|+
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~-~aF~~~~ 250 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTN-ATTIPD-FTFAQKK 250 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBC-CCEECT-TTTTTCT
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCC-cceecH-hhhhCCC
Confidence 0000 000111 111 123556666654 35566666676678999999998743 221111 1123688
Q ss_pred CCcEEEecCCCCCHHHHHHHHhhCCCCc-EEeccCCcccchhhHHHHHHcCccccEEEecccccChHHHHHHHHhhhhcc
Q psy5339 392 RLRALDIGKCDVSDAGLRALAESCPNIK-KLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCI 470 (479)
Q Consensus 392 ~L~~L~l~~~~i~~~~~~~l~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~~~ 470 (479)
+|+.+++.++ ++..+-.++. .|++|+ .+++.+ .++..+... +..|++|+.++++++.++..+-.++. .+++++
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~-~~~~L~~~l~l~~--~l~~I~~~a-F~~c~~L~~l~l~~n~i~~I~~~aF~-~~~~L~ 324 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFS-NCGRLAGTLELPA--SVTAIEFGA-FMGCDNLRYVLATGDKITTLGDELFG-NGVPSK 324 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTT-TCTTCCEEEEECT--TCCEECTTT-TTTCTTEEEEEECSSCCCEECTTTTC-TTCCCC
T ss_pred CCCEEECCcc-cceehHHHhh-CChhccEEEEEcc--cceEEchhh-hhCCccCCEEEeCCCccCccchhhhc-CCcchh
Confidence 9999999887 4433323333 588899 999987 344433222 35789999999988887765555442 344443
No 135
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.51 E-value=1.8e-08 Score=86.36 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=36.2
Q ss_pred cceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCC
Q psy5339 261 LLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVT 327 (479)
Q Consensus 261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~ 327 (479)
++|++|+++++ .+...... .+..+++|+.|++++ +.+.......+ ..+++|+.|++++| .++
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~L~~-N~l~~i~~~~~-~~l~~L~~L~Ls~N-~l~ 101 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPG-VFDSLINLKELYLGS-NQLGALPVGVF-DSLTQLTVLDLGTN-QLT 101 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECCS-SCCCCCCTTTT-TTCTTCCEEECCSS-CCC
T ss_pred CCCCEEEcCCC-ccCccCHH-HhhCccCCcEEECCC-CCCCCcChhhc-ccCCCcCEEECCCC-cCC
Confidence 56778888774 33332111 224567788888877 55655443333 23477888888774 443
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.49 E-value=1.8e-08 Score=84.27 Aligned_cols=130 Identities=19% Similarity=0.146 Sum_probs=72.1
Q ss_pred HHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHH
Q psy5339 60 IVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIA 139 (479)
Q Consensus 60 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~ 139 (479)
.+..+++|++|++++ +.++. ++ ....+++|++|+++++ .++. +......+++|++|+++++ .++. ++. .
T Consensus 43 ~~~~l~~L~~L~ls~-n~l~~--l~-~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~-~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALST-NNIEK--IS-SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIAS--LSG-I 111 (198)
T ss_dssp HHHHTTTCSEEECSE-EEESC--CC-CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHH-H
T ss_pred HHhcCCCCCEEECCC-CCCcc--cc-ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCc--CCc-c
Confidence 456667777777776 35554 22 2233566777777763 3442 2223333456777777664 3332 222 3
Q ss_pred HhCCccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHH---------HHHHHHHcCCCCcEEec
Q psy5339 140 RRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDA---------GLRALAESCPNIKKLSL 201 (479)
Q Consensus 140 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---------~~~~l~~~~~~L~~L~l 201 (479)
..+++|+.|+++++.......+ .....+++|++|++++|.+... ........+++|+.|+-
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHH-HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred ccCCCCCEEECCCCcCCchhHH-HHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 3557777787777543322222 2334567888888888875433 22333455888888873
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.48 E-value=2.9e-08 Score=90.29 Aligned_cols=104 Identities=10% Similarity=0.065 Sum_probs=54.1
Q ss_pred CCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccccchhHHHHHHHhcCccceEEcCCcccCHHHHHHHHHc----
Q psy5339 117 ATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAES---- 192 (479)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---- 192 (479)
++++.|.+.+ .+....+..+...+++|+.|+++++......... ...+.+..+.+..+.+.+.. ...
T Consensus 25 ~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~~~a----F~~~~~~ 95 (329)
T 3sb4_A 25 NSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVPAYA----FSNVVNG 95 (329)
T ss_dssp HHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEECTTT----TEEEETT
T ss_pred CceeEEEEec--cccHHHHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccccCHHH----hcccccc
Confidence 4678888875 3455556666555788888888776433100000 00112233333333333321 234
Q ss_pred ----CCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCccc
Q psy5339 193 ----CPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQI 232 (479)
Q Consensus 193 ----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 232 (479)
+++|+++++.. .+...+- ..+..|++|+++++.++.+
T Consensus 96 ~~~g~~~L~~l~L~~--~i~~I~~-~aF~~~~~L~~l~l~~n~i 136 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE--KIKNIED-AAFKGCDNLKICQIRKKTA 136 (329)
T ss_dssp EEEECTTCCC-CBCT--TCCEECT-TTTTTCTTCCEEEBCCSSC
T ss_pred cccccCCCcEEECCc--cccchhH-HHhhcCcccceEEcCCCCc
Confidence 67788888765 2322111 1234678888888877764
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.36 E-value=1.9e-07 Score=90.97 Aligned_cols=125 Identities=15% Similarity=0.109 Sum_probs=74.8
Q ss_pred ccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHHHhCCCc
Q psy5339 40 LLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATL 119 (479)
Q Consensus 40 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 119 (479)
.|++|++++| .+.. ++. ++.+++|+.|++++ +.++. ++.....+++|++|++++ +.++.. + ....+++|
T Consensus 442 ~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~-N~l~~--lp~~~~~l~~L~~L~Ls~-N~l~~l--p-~l~~l~~L 510 (567)
T 1dce_A 442 DVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSH-NRLRA--LPPALAALRCLEVLQASD-NALENV--D-GVANLPRL 510 (567)
T ss_dssp TCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCS-SCCCC--CCGGGGGCTTCCEEECCS-SCCCCC--G-GGTTCSSC
T ss_pred CceEEEecCC-CCCC--CcC-ccccccCcEeecCc-ccccc--cchhhhcCCCCCEEECCC-CCCCCC--c-ccCCCCCC
Confidence 5777888876 4543 233 56777888888887 46662 333445577788888877 455542 2 23446778
Q ss_pred cEEecCCCCCCChHHHHHHHHhCCccceeeccCccccch-hHHHHHHHhcCccceEEc
Q psy5339 120 RYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSD-DAITVLARSCTRLRALDI 176 (479)
Q Consensus 120 ~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l 176 (479)
+.|+++++ .++....+.....+++|+.|+++++..... .....+...+++|+.|++
T Consensus 511 ~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 511 QELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88888764 333221122345678888888887653222 122344455688888764
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.26 E-value=3.8e-07 Score=75.61 Aligned_cols=129 Identities=20% Similarity=0.127 Sum_probs=66.9
Q ss_pred cccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEE
Q psy5339 17 QFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKEL 96 (479)
Q Consensus 17 ~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 96 (479)
++++++++.+..++.. +. .+|++|+++++ .+........+..+++|++|++++ +.++...... ...+++|++|
T Consensus 11 ~~l~~s~~~l~~ip~~--~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~-~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD--IP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNA-FEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSCCSC--CC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTT-TTTCTTCCEE
T ss_pred CEEEcCCCCcCcCccC--CC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCC-CCCCCcCHhH-cCCcccCCEE
Confidence 5666766654443321 11 26777777776 443322112245667777777777 4555432222 2335677777
Q ss_pred EeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCcccc
Q psy5339 97 SVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAV 156 (479)
Q Consensus 97 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 156 (479)
++++ +.++.... .....+++|++|+++++ .+.... +.....+++|++|+++++...
T Consensus 84 ~Ls~-N~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 84 QLGE-NKIKEISN-KMFLGLHQLKTLNLYDN-QISCVM-PGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCS-CCCCEECS-SSSTTCTTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECTTCCBC
T ss_pred ECCC-CcCCccCH-HHhcCCCCCCEEECCCC-cCCeeC-HHHhhcCCCCCEEEeCCCCcc
Confidence 7776 34443211 11223466777777663 232211 112235677888888776543
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.21 E-value=1.4e-07 Score=78.20 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=19.0
Q ss_pred CccEEEeccCCccCcchhccccccCCCCcEEeccCC
Q psy5339 288 QLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDC 323 (479)
Q Consensus 288 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 323 (479)
+++.|++++ +.+...........+++|++|+++++
T Consensus 30 ~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~N 64 (192)
T 1w8a_A 30 HTTELLLND-NELGRISSDGLFGRLPHLVKLELKRN 64 (192)
T ss_dssp TCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSS
T ss_pred CCCEEECCC-CcCCccCCccccccCCCCCEEECCCC
Confidence 666666666 45554433322233466666666663
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.15 E-value=5e-07 Score=74.91 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=20.0
Q ss_pred hCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcc
Q psy5339 389 SCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDL 428 (479)
Q Consensus 389 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 428 (479)
.+++|++|++++|.++......+ ..+++|+.|++++|+.
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPEGAF-NDLSALSHLAIGANPL 138 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECCSSCE
T ss_pred CCCCCCEEECCCCCCCeeChhhh-hcCccccEEEeCCCCe
Confidence 35566666666666543211111 2356666666666643
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.12 E-value=9.5e-07 Score=73.19 Aligned_cols=127 Identities=14% Similarity=0.002 Sum_probs=72.7
Q ss_pred cccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEE
Q psy5339 17 QFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKEL 96 (479)
Q Consensus 17 ~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 96 (479)
++++++++.+..++.. + .++|++|+++++ .+.. ++..+..+++|++|++++ +.++......+ ..+++|++|
T Consensus 13 ~~l~~~~~~l~~ip~~--~--~~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f-~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG--I--PRDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSN-NRISTLSNQSF-SNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCSSCCSC--C--CTTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCS-SCCCCCCTTTT-TTCTTCCEE
T ss_pred CEEEcCCCCCCcCCCC--C--CCCCCEEECCCC-cCch--hHHHhhcccCCCEEECCC-CcCCEeCHhHc-cCCCCCCEE
Confidence 5677777754443321 1 257788888876 4443 224456777888888887 46654332222 346778888
Q ss_pred EeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCcccc
Q psy5339 97 SVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAV 156 (479)
Q Consensus 97 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 156 (479)
++++ +.++.... .....+++|+.|+++++ .+.... ......+++|+.|++.++...
T Consensus 84 ~Ls~-N~l~~i~~-~~f~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 84 ILSY-NRLRCIPP-RTFDGLKSLRLLSLHGN-DISVVP-EGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCS-SCCCBCCT-TTTTTCTTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred ECCC-CccCEeCH-HHhCCCCCCCEEECCCC-CCCeeC-hhhhhcCccccEEEeCCCCee
Confidence 8877 34543221 11234577888888764 232111 112345678888888876543
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.09 E-value=1.4e-07 Score=94.97 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=53.9
Q ss_pred hcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcHHHHHHHHcCCCccEEeccccCCCChhHHHHHHHh
Q psy5339 284 SNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARR 363 (479)
Q Consensus 284 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 363 (479)
..++.|+.|++++ +.+.......+ .+++|++|+|++| .++. +..-...+++|+.|+|++ +.++.. ......
T Consensus 221 ~~l~~L~~L~Ls~-n~l~~l~~~~~--~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~-N~l~~l--p~~~~~ 291 (727)
T 4b8c_D 221 YDDQLWHALDLSN-LQIFNISANIF--KYDFLTRLYLNGN-SLTE--LPAEIKNLSNLRVLDLSH-NRLTSL--PAELGS 291 (727)
T ss_dssp -CCCCCCEEECTT-SCCSCCCGGGG--GCCSCSCCBCTTS-CCSC--CCGGGGGGTTCCEEECTT-SCCSSC--CSSGGG
T ss_pred ccCCCCcEEECCC-CCCCCCChhhc--CCCCCCEEEeeCC-cCcc--cChhhhCCCCCCEEeCcC-CcCCcc--ChhhcC
Confidence 4456666666666 34443222211 3466666666663 4442 111123344666666666 334321 111234
Q ss_pred CCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCH
Q psy5339 364 CYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSD 405 (479)
Q Consensus 364 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 405 (479)
+++|++|++++|. ++. +......+++|+.|+|++|.++.
T Consensus 292 l~~L~~L~L~~N~-l~~--lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 292 CFQLKYFYFFDNM-VTT--LPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GTTCSEEECCSSC-CCC--CCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCEEECCCCC-CCc--cChhhhcCCCccEEeCCCCccCC
Confidence 5667777776653 321 11112346677777777777664
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.06 E-value=6.3e-07 Score=73.24 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=33.5
Q ss_pred hCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcCccccEEEecccccC
Q psy5339 389 SCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQIS 455 (479)
Q Consensus 389 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~i~ 455 (479)
.+++|++|++++|.++......+ ..+++|+.|++++| .++.... ..+..+++|+.|++++|+++
T Consensus 74 ~l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 74 KLTKLTILYLHENKLQSLPNGVF-DKLTQLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEEECCCCCccccCHHHh-hCCcccCEEECcCC-cceEeCH-HHhcCCcccCEEEecCCCee
Confidence 35666666666666543211111 23566777777666 3443221 11234566777777777644
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.94 E-value=7.1e-07 Score=89.87 Aligned_cols=110 Identities=22% Similarity=0.202 Sum_probs=68.4
Q ss_pred ccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeecCcccCcHHHHHHH
Q psy5339 34 ASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDFGLYELA 113 (479)
Q Consensus 34 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 113 (479)
.+..+.+|+.|+|++| .+.. ++..+..+++|++|+|++ +.++. ++.....+++|+.|+++++ .++. +....
T Consensus 219 ~~~~l~~L~~L~Ls~n-~l~~--l~~~~~~l~~L~~L~Ls~-N~l~~--lp~~~~~l~~L~~L~Ls~N-~l~~--lp~~~ 289 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNL-QIFN--ISANIFKYDFLTRLYLNG-NSLTE--LPAEIKNLSNLRVLDLSHN-RLTS--LPAEL 289 (727)
T ss_dssp ---CCCCCCEEECTTS-CCSC--CCGGGGGCCSCSCCBCTT-SCCSC--CCGGGGGGTTCCEEECTTS-CCSS--CCSSG
T ss_pred hhccCCCCcEEECCCC-CCCC--CChhhcCCCCCCEEEeeC-CcCcc--cChhhhCCCCCCEEeCcCC-cCCc--cChhh
Confidence 3667788888888887 4432 222234678888888888 46662 3333355788888888874 4552 22223
Q ss_pred HhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCccc
Q psy5339 114 KLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEA 155 (479)
Q Consensus 114 ~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 155 (479)
..+++|++|+++++ .++ .++.....+++|+.|+++++..
T Consensus 290 ~~l~~L~~L~L~~N-~l~--~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 290 GSCFQLKYFYFFDN-MVT--TLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp GGGTTCSEEECCSS-CCC--CCCSSTTSCTTCCCEECTTSCC
T ss_pred cCCCCCCEEECCCC-CCC--ccChhhhcCCCccEEeCCCCcc
Confidence 45678888888875 333 1222245678888888888653
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.90 E-value=4.8e-06 Score=67.94 Aligned_cols=129 Identities=12% Similarity=0.007 Sum_probs=69.2
Q ss_pred hcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcE
Q psy5339 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKE 95 (479)
Q Consensus 16 L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 95 (479)
.+.++++++.+..++. ...++|++|+++++ .+... ....+..+++|++|++++ +.++.... .....+++|++
T Consensus 9 ~~~l~~~~~~l~~~p~----~~~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~-n~l~~~~~-~~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT----GIPSSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSQ-NQIQSLPD-GVFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSCCT----TCCTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCS-SCCCCCCT-TTTTTCTTCCE
T ss_pred CCEEEecCCCCccCCC----CCCCCCcEEEeCCC-cccEe-CHHHhcCcccccEEECCC-CcceEeCh-hHccCCCccCE
Confidence 3566666664443321 12256777777776 34321 122345667777777777 35553221 22234677777
Q ss_pred EEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeeccCcccc
Q psy5339 96 LSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAV 156 (479)
Q Consensus 96 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 156 (479)
|+++++ .++... ......+++|++|+++++ .++... ......+++|++|+++++...
T Consensus 81 L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 81 LYLHEN-KLQSLP-NGVFDKLTQLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCC-CccccC-HHHhhCCcccCEEECcCC-cceEeC-HHHhcCCcccCEEEecCCCee
Confidence 777763 444321 111234567777777764 333111 112345678888888876543
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.72 E-value=5.5e-05 Score=65.28 Aligned_cols=84 Identities=23% Similarity=0.244 Sum_probs=44.1
Q ss_pred hcCCcccEEecccccccchh-hHhhhhhcCCCCcEEEeecCcccCcH-HHHHHHHhCCCccEEecCCCCCCCh------H
Q psy5339 62 SNCPQLIYLYLRRCVKLTDI-GIKYVPSFCSQLKELSVSDCTQVTDF-GLYELAKLGATLRYLSVAKCDQVSD------A 133 (479)
Q Consensus 62 ~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~------~ 133 (479)
.++|+|++|++++ +.++.. .++.....+++|+.|++++ +.++.. .+..+. .+ +|++|.+.+.. +.. .
T Consensus 167 ~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~-~l-~L~~L~L~~Np-l~~~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIK-GL-KLEELWLDGNS-LCDTFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGT-TS-CCSEEECTTST-TGGGCSSHHH
T ss_pred hhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcc-cC-CcceEEccCCc-CccccCcchh
Confidence 4567777777777 455542 2233334567777777766 345443 121111 11 67777776632 321 1
Q ss_pred HHHHHHHhCCccceeec
Q psy5339 134 GLKVIARRCYKLRYLNA 150 (479)
Q Consensus 134 ~l~~l~~~~~~L~~L~l 150 (479)
-...+...+|+|+.|+=
T Consensus 242 y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHCTTCCEESS
T ss_pred HHHHHHHHCcccCeECC
Confidence 12345566777777763
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.70 E-value=1.9e-05 Score=63.80 Aligned_cols=102 Identities=20% Similarity=0.070 Sum_probs=65.4
Q ss_pred hcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcE
Q psy5339 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKE 95 (479)
Q Consensus 16 L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 95 (479)
.+.++++++.+..++.. + ..+|++|++++| .+.... +..+..+++|++|++++ +.++.... .....+++|++
T Consensus 11 ~~~l~~s~n~l~~ip~~--~--~~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~-N~l~~l~~-~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG--I--PTTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDN-NQLTVLPA-GVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCSSCCSC--C--CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCS-SCCCCCCT-TTTTTCTTCCE
T ss_pred CCEEEeCCCCcCccCcc--C--CCCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCC-CCcCccCh-hhccCCCCCCE
Confidence 57788888865554321 2 377888999887 454321 33456788899999988 57764322 22345788999
Q ss_pred EEeecCcccCcHHHHHHHHhCCCccEEecCCC
Q psy5339 96 LSVSDCTQVTDFGLYELAKLGATLRYLSVAKC 127 (479)
Q Consensus 96 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 127 (479)
|++++ +.++.... .....+++|++|++++.
T Consensus 83 L~L~~-N~l~~~~~-~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 83 LSLND-NQLKSIPR-GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp EECCS-SCCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred EECCC-CccCEeCH-HHhcCCCCCCEEEeCCC
Confidence 99987 45553211 12345678889988874
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.68 E-value=2.1e-05 Score=63.73 Aligned_cols=101 Identities=16% Similarity=0.087 Sum_probs=64.2
Q ss_pred cccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEE
Q psy5339 17 QFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKEL 96 (479)
Q Consensus 17 ~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 96 (479)
+.++++++.+..++.. + .++|++|++++| .+.... +..+..+++|++|++++ +.++.... .....+++|++|
T Consensus 15 ~~l~~~~n~l~~iP~~--~--~~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~-N~l~~i~~-~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG--I--PTDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNS-NKLTAIPT-GVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCSSCCSC--C--CTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEE
T ss_pred cEEEeCCCCCCccCCC--c--CCCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCC-CCCCccCh-hHhCCcchhhEE
Confidence 6788888865544321 2 278888888887 454321 33457788888888888 57765322 223457888888
Q ss_pred EeecCcccCcHHHHHHHHhCCCccEEecCCC
Q psy5339 97 SVSDCTQVTDFGLYELAKLGATLRYLSVAKC 127 (479)
Q Consensus 97 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 127 (479)
++++ +.++.... .....+++|+.|++++.
T Consensus 87 ~L~~-N~l~~l~~-~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 87 DLND-NHLKSIPR-GAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp ECCS-SCCCCCCT-TTTTTCTTCSEEECCSS
T ss_pred ECCC-CccceeCH-HHhccccCCCEEEeCCC
Confidence 8887 45553211 12344678888888875
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.55 E-value=0.0001 Score=63.63 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=17.1
Q ss_pred hCCCCcEEEecCCCCCHH-HHHHHHhhCCCCcEEeccCC
Q psy5339 389 SCTRLRALDIGKCDVSDA-GLRALAESCPNIKKLSLRQC 426 (479)
Q Consensus 389 ~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~~ 426 (479)
.+|+|+.|+|++|.++.. ++..+...+++|+.|+|++|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 445555555555554331 12222223555555555555
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.54 E-value=3.2e-05 Score=62.38 Aligned_cols=81 Identities=19% Similarity=0.068 Sum_probs=39.1
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.|++|++++|.+..+.. ..+..+++|++|++++| .+.... ...+..+++|++|++++ +.++.... .....+++|+
T Consensus 31 ~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~-N~l~~~~~-~~~~~l~~L~ 105 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNN-QLTVLP-AGVFDKLTQLTQLSLND-NQLKSIPR-GAFDNLKSLT 105 (170)
T ss_dssp TCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCTTCC
T ss_pred CCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCC-CcCccC-hhhccCCCCCCEEECCC-CccCEeCH-HHhcCCCCCC
Confidence 45666666664333321 22455566666666665 333211 12234556666666666 35543221 1223355666
Q ss_pred EEEeec
Q psy5339 95 ELSVSD 100 (479)
Q Consensus 95 ~L~l~~ 100 (479)
+|++++
T Consensus 106 ~L~L~~ 111 (170)
T 3g39_A 106 HIWLLN 111 (170)
T ss_dssp EEECCS
T ss_pred EEEeCC
Confidence 666665
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.51 E-value=4.2e-05 Score=61.95 Aligned_cols=81 Identities=16% Similarity=0.017 Sum_probs=37.9
Q ss_pred hhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCc
Q psy5339 15 LLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLK 94 (479)
Q Consensus 15 ~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 94 (479)
.|++|++++|.+..+.. ..+..+++|++|++++| .+.... ...+..+++|++|++++ +.++.... .....+++|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~-N~l~~l~~-~~~~~l~~L~ 108 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLND-NHLKSIPR-GAFDNLKSLT 108 (174)
T ss_dssp TCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCTTCS
T ss_pred CCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCC-CccceeCH-HHhccccCCC
Confidence 45566666654333221 22455556666666655 333211 12234555666666665 34443211 1123345566
Q ss_pred EEEeec
Q psy5339 95 ELSVSD 100 (479)
Q Consensus 95 ~L~l~~ 100 (479)
+|++++
T Consensus 109 ~L~L~~ 114 (174)
T 2r9u_A 109 HIYLYN 114 (174)
T ss_dssp EEECCS
T ss_pred EEEeCC
Confidence 666655
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.48 E-value=1.4e-06 Score=81.21 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=20.2
Q ss_pred ccccccccceeccCCCCCCchhhHHHHHhcCCcccEEeccc
Q psy5339 34 ASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRR 74 (479)
Q Consensus 34 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 74 (479)
+|..+.+|+.+.+... ++..+ ...+.+|++|+.+++..
T Consensus 66 AF~~c~~L~~i~lp~~--i~~I~-~~aF~~c~~L~~i~lp~ 103 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST--VREIG-EFAFENCSKLEIINIPD 103 (394)
T ss_dssp TTTTCTTEEEEECCTT--CCEEC-TTTTTTCTTCCEECCCT
T ss_pred HhhCCCCceEEEeCCC--ccCcc-hhHhhCCCCCcEEEeCC
Confidence 4556666777776542 22111 12245666777777654
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.28 E-value=2.5e-05 Score=72.58 Aligned_cols=240 Identities=12% Similarity=0.152 Sum_probs=131.9
Q ss_pred ccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccc
Q psy5339 170 RLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCI 249 (479)
Q Consensus 170 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~ 249 (479)
+|+.+.+..+ +....-..+.. .+|+.+.+.. .+...+-. .+..|++|+.+++.++.+...+...+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~--~~L~~i~lp~--~l~~I~~~-aF~~c~~L~~l~l~~n~l~~I~~~aF~-------- 201 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN--STVQEIVFPS--TLEQLKED-IFYYCYNLKKADLSKTKITKLPASTFV-------- 201 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT--CCCCEEECCT--TCCEECSS-TTTTCTTCCEEECTTSCCSEECTTTTT--------
T ss_pred CccEEEeCCC-ccEECHHhcCC--CCceEEEeCC--CccEehHH-HhhCcccCCeeecCCCcceEechhhEe--------
Confidence 7999998765 22111112212 4699999875 23221111 245789999999988764432211111
Q ss_pred cccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcH
Q psy5339 250 QISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDF 329 (479)
Q Consensus 250 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 329 (479)
.++|+.+.+... +...+-.. +..|++|+.+.+.. ++...+...+.. .+|+.+.+.+ .++..
T Consensus 202 ----------~~~L~~l~lp~~--l~~I~~~a-F~~~~~L~~l~l~~--~l~~I~~~aF~~--~~L~~i~lp~--~i~~I 262 (401)
T 4fdw_A 202 ----------YAGIEEVLLPVT--LKEIGSQA-FLKTSQLKTIEIPE--NVSTIGQEAFRE--SGITTVKLPN--GVTNI 262 (401)
T ss_dssp ----------TCCCSEEECCTT--CCEECTTT-TTTCTTCCCEECCT--TCCEECTTTTTT--CCCSEEEEET--TCCEE
T ss_pred ----------ecccCEEEeCCc--hheehhhH-hhCCCCCCEEecCC--CccCcccccccc--CCccEEEeCC--CccEE
Confidence 235888887652 32222222 35788999999976 455555555544 5888888855 33322
Q ss_pred HHHHHHHcCCCccEEeccccCCCC-----hhHHHHHHHhCCCccEEeccCC-CCccHHHHHHHHHhCCCCcEEEecCCCC
Q psy5339 330 GLYELAKLGATLRYLSVAKCDQVS-----DAGLKVIARRCYKLRYLNARGC-EAVSDDAITVLARSCTRLRALDIGKCDV 403 (479)
Q Consensus 330 ~~~~l~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~i 403 (479)
+-. ....+++|+.+.+.+. ... ..+- .....|++|+.+.+... ..+.+.. ...|++|+.+.+..+ +
T Consensus 263 ~~~-aF~~c~~L~~l~l~~~-~~~~~~~~~I~~-~aF~~c~~L~~l~l~~~i~~I~~~a----F~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 263 ASR-AFYYCPELAEVTTYGS-TFNDDPEAMIHP-YCLEGCPKLARFEIPESIRILGQGL----LGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp CTT-TTTTCTTCCEEEEESS-CCCCCTTCEECT-TTTTTCTTCCEECCCTTCCEECTTT----TTTCCSCCEEEECTT-C
T ss_pred Chh-HhhCCCCCCEEEeCCc-cccCCcccEECH-HHhhCCccCCeEEeCCceEEEhhhh----hcCCCCccEEEECcc-c
Confidence 111 2234668999888652 211 1111 12236788888888752 1122211 125788899888655 3
Q ss_pred CHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcC-ccccEEEeccccc
Q psy5339 404 SDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC-RGLQQLNIQDCQI 454 (479)
Q Consensus 404 ~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~i 454 (479)
+..+-.++. .| +|+.+.+.++. +....-. .+..+ ..++.|.+..+.+
T Consensus 335 ~~I~~~aF~-~~-~L~~l~l~~n~-~~~l~~~-~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 335 TQINFSAFN-NT-GIKEVKVEGTT-PPQVFEK-VWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CEECTTSSS-SS-CCCEEEECCSS-CCBCCCS-SCCCSCTTCCEEEECGGGH
T ss_pred cEEcHHhCC-CC-CCCEEEEcCCC-Ccccccc-cccCCCCCccEEEeCHHHH
Confidence 322222232 36 88999888873 3321111 11233 3677888877653
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.07 E-value=0.00037 Score=63.53 Aligned_cols=62 Identities=16% Similarity=0.080 Sum_probs=31.3
Q ss_pred cccccccceeccCC-CCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCCCCcEEEeec
Q psy5339 35 SPTQLLLQFLDLTD-CSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSD 100 (479)
Q Consensus 35 ~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 100 (479)
++.+.+|++|+|++ | .+.... +..+..+++|++|+|++ +.++..... ....+++|++|++++
T Consensus 27 l~~~~~L~~L~l~~~n-~l~~~~-~~~~~~l~~L~~L~l~~-N~l~~~~~~-~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 27 LPGAENLTELYIENQQ-HLQHLE-LRDLRGLGELRNLTIVK-SGLRFVAPD-AFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCSCSCCSEEECCSCS-SCCEEC-GGGSCSCCCCSEEECCS-SCCCEECTT-GGGSCSCCCEEECCS
T ss_pred CCCCCCeeEEEccCCC-CCCCcC-hhHhccccCCCEEECCC-CccceeCHH-HhcCCcCCCEEeCCC
Confidence 55555666666664 4 333211 12345566666666666 355442211 223356666666665
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.99 E-value=3e-05 Score=72.09 Aligned_cols=218 Identities=12% Similarity=0.147 Sum_probs=115.0
Q ss_pred ccceEEcCCcccCHHHHHHHHHcCCCCcEEecCCCCCcChHHHHHHHhhCCCCcEEEccCcccchhhhHHHHhhhccccc
Q psy5339 170 RLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYCRGLQQLNIQDCQISVEGYRAVKKYCKRCCI 249 (479)
Q Consensus 170 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~ 249 (479)
+|+++.+... +....-. ....|++|+.+++..+ .+....-..+ .+.+|+++.+..+ +...+..
T Consensus 158 ~L~~i~lp~~-l~~I~~~-aF~~c~~L~~l~l~~n-~l~~I~~~aF--~~~~L~~l~lp~~-l~~I~~~----------- 220 (401)
T 4fdw_A 158 TVQEIVFPST-LEQLKED-IFYYCYNLKKADLSKT-KITKLPASTF--VYAGIEEVLLPVT-LKEIGSQ----------- 220 (401)
T ss_dssp CCCEEECCTT-CCEECSS-TTTTCTTCCEEECTTS-CCSEECTTTT--TTCCCSEEECCTT-CCEECTT-----------
T ss_pred CceEEEeCCC-ccEehHH-HhhCcccCCeeecCCC-cceEechhhE--eecccCEEEeCCc-hheehhh-----------
Confidence 5677766642 2111111 1244789999999754 2322221222 2578999988754 2111111
Q ss_pred cccccccCCcccceeEEecCCCCCCChhhHHHHHhcCCCccEEEeccCCccCcchhccccccCCCCcEEeccCCCCCCcH
Q psy5339 250 QISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCSQLKELSVSDCTQVTDF 329 (479)
Q Consensus 250 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 329 (479)
.....++|+.+.+.+. +...+...+ .. .+|+.+.+.. .+...+...+. .|++|+.+.+.++ .....
T Consensus 221 ------aF~~~~~L~~l~l~~~--l~~I~~~aF-~~-~~L~~i~lp~--~i~~I~~~aF~-~c~~L~~l~l~~~-~~~~~ 286 (401)
T 4fdw_A 221 ------AFLKTSQLKTIEIPEN--VSTIGQEAF-RE-SGITTVKLPN--GVTNIASRAFY-YCPELAEVTTYGS-TFNDD 286 (401)
T ss_dssp ------TTTTCTTCCCEECCTT--CCEECTTTT-TT-CCCSEEEEET--TCCEECTTTTT-TCTTCCEEEEESS-CCCCC
T ss_pred ------HhhCCCCCCEEecCCC--ccCcccccc-cc-CCccEEEeCC--CccEEChhHhh-CCCCCCEEEeCCc-cccCC
Confidence 1122335777777652 222222222 22 6889998854 55555444443 4589999998774 22200
Q ss_pred H----HHHHHHcCCCccEEeccccCCCChhHHHHHHHhCCCccEEeccCCCCccHHHHHHHHHhCCCCcEEEecCCCCCH
Q psy5339 330 G----LYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNARGCEAVSDDAITVLARSCTRLRALDIGKCDVSD 405 (479)
Q Consensus 330 ~----~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~ 405 (479)
. -......+++|+.+.+.. .+...+-..+ .+|++|+.+.+..+ ++..+-. ....| +|+.+++.++.+..
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF-~~c~~L~~l~lp~~--l~~I~~~-aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLL-GGNRKVTQLTIPAN--VTQINFS-AFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT--TCCEECTTTT-TTCCSCCEEEECTT--CCEECTT-SSSSS-CCCEEEECCSSCCB
T ss_pred cccEECHHHhhCCccCCeEEeCC--ceEEEhhhhh-cCCCCccEEEECcc--ccEEcHH-hCCCC-CCCEEEEcCCCCcc
Confidence 0 011233467899998874 3443332222 36789999998653 2211111 11256 89999999887432
Q ss_pred HHHHHHHhhCC-CCcEEeccCC
Q psy5339 406 AGLRALAESCP-NIKKLSLRQC 426 (479)
Q Consensus 406 ~~~~~l~~~~~-~L~~L~l~~~ 426 (479)
..-..+ ..++ +++.|.+..+
T Consensus 360 l~~~~F-~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 360 VFEKVW-YGFPDDITVIRVPAE 380 (401)
T ss_dssp CCCSSC-CCSCTTCCEEEECGG
T ss_pred cccccc-cCCCCCccEEEeCHH
Confidence 111111 1343 5788888776
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.91 E-value=0.00035 Score=63.70 Aligned_cols=86 Identities=19% Similarity=0.055 Sum_probs=56.9
Q ss_pred CcccchhcccCCCC-CcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhh
Q psy5339 10 SPTQLLLQFLDLTD-CSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPS 88 (479)
Q Consensus 10 ~~~~~~L~~L~ls~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 88 (479)
++....|+.|+|++ |.+..+. ...|..+++|++|+|++| .+.... +..+..+++|++|+|++ +.++.... ....
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~-N~l~~~~~-~~~~ 101 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSF-NALESLSW-KTVQ 101 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCS-SCCSCCCS-TTTC
T ss_pred CCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCCC-CccceeCH-HHcc
Confidence 45555689999986 7554443 234778889999999987 555422 33457889999999998 57764321 2222
Q ss_pred cCCCCcEEEeecC
Q psy5339 89 FCSQLKELSVSDC 101 (479)
Q Consensus 89 ~~~~L~~L~l~~~ 101 (479)
.++ |+.|++.++
T Consensus 102 ~~~-L~~l~l~~N 113 (347)
T 2ifg_A 102 GLS-LQELVLSGN 113 (347)
T ss_dssp SCC-CCEEECCSS
T ss_pred cCC-ceEEEeeCC
Confidence 233 888888874
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.52 E-value=0.00027 Score=65.77 Aligned_cols=61 Identities=18% Similarity=0.124 Sum_probs=39.8
Q ss_pred cCcccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEeccc
Q psy5339 9 ASPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRR 74 (479)
Q Consensus 9 ~~~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 74 (479)
|+-.+..|+.+.+... +..+ ...+|..+.+|+.+++.++ +...+ ...+..+++|+.+.+..
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I-~~~aF~~c~~L~~i~lp~~--l~~I~-~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREI-GEFAFENCSKLEIINIPDS--VKMIG-RCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEE-CTTTTTTCTTCCEECCCTT--CCEEC-TTTTTTCTTCCCCCCCT
T ss_pred HhhCCCCceEEEeCCC-ccCc-chhHhhCCCCCcEEEeCCC--ceEcc-chhhcccccchhhcccC
Confidence 4556667888888654 3333 3346888999999999763 22211 12356788888888765
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=86.58 E-value=0.26 Score=45.42 Aligned_cols=80 Identities=19% Similarity=0.333 Sum_probs=34.5
Q ss_pred hCCCccEEeccCC-CCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhhHHHHHHcC
Q psy5339 363 RCYKLRYLNARGC-EAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRGVQCIAYYC 441 (479)
Q Consensus 363 ~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 441 (479)
.|.+|+.+.+... ..+.+..+ ..|.+|+.+.+..+ ++..+-.++. .|++|+.+++.++.. . .. ....+
T Consensus 309 ~c~~L~~i~lp~~v~~I~~~aF----~~C~~L~~i~ip~s-v~~I~~~aF~-~C~~L~~i~~~~~~~--~--~~-~~~~~ 377 (394)
T 4gt6_A 309 GCISLKSIDIPEGITQILDDAF----AGCEQLERIAIPSS-VTKIPESAFS-NCTALNNIEYSGSRS--Q--WN-AISTD 377 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTT----TTCTTCCEEEECTT-CCBCCGGGGT-TCTTCCEEEESSCHH--H--HH-TCBCC
T ss_pred CCCCcCEEEeCCcccEehHhHh----hCCCCCCEEEECcc-cCEEhHhHhh-CCCCCCEEEECCcee--e--hh-hhhcc
Confidence 4566666666431 12222111 24677777777543 2222222222 477777777777521 1 11 12355
Q ss_pred ccccEEEecccc
Q psy5339 442 RGLQQLNIQDCQ 453 (479)
Q Consensus 442 ~~L~~L~l~~~~ 453 (479)
..|+.+.+..+.
T Consensus 378 ~~L~~i~i~~~~ 389 (394)
T 4gt6_A 378 SGLQNLPVAPGS 389 (394)
T ss_dssp CCC---------
T ss_pred CCCCEEEeCCCC
Confidence 677777776554
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=83.45 E-value=0.51 Score=35.39 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=23.3
Q ss_pred CCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccCCcccchhh
Q psy5339 392 RLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQCDLVTDRG 433 (479)
Q Consensus 392 ~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~ 433 (479)
+|++|+|++|.|+......+ ..+++|+.|+|.+|+..-+..
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f-~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLL-DALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTG-GGCTTCCEEECCSSCCBCSGG
T ss_pred CCCEEECCCCcCCccChhhh-hhccccCEEEecCCCeeccCc
Confidence 57777777776543222222 246677777777776544433
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=82.02 E-value=1.1 Score=33.47 Aligned_cols=34 Identities=15% Similarity=-0.061 Sum_probs=15.2
Q ss_pred hcccCCCCCcccccccccccccccccceeccCCCC
Q psy5339 16 LQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCS 50 (479)
Q Consensus 16 L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 50 (479)
|++|+|++|.+..+.. ..|..+++|+.|+|++|+
T Consensus 33 l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGNNLTALPP-GLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccCh-hhhhhccccCEEEecCCC
Confidence 4555555554333321 223444455555555543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=71.03 E-value=2.8 Score=38.35 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=70.0
Q ss_pred CcccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhc
Q psy5339 10 SPTQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSF 89 (479)
Q Consensus 10 ~~~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 89 (479)
+..+..|+.+.+.+.. .. ....+|..+.+|+.+.+... +.... ...+.+|.+|+.+++.. .++..+-..+ ..
T Consensus 261 F~~c~~L~~i~lp~~~-~~-I~~~aF~~c~~L~~i~l~~~--i~~I~-~~aF~~c~~L~~i~lp~--~v~~I~~~aF-~~ 332 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VS-IGTGAFMNCPALQDIEFSSR--ITELP-ESVFAGCISLKSIDIPE--GITQILDDAF-AG 332 (394)
T ss_dssp TTTCSSCCEEECCTTC-CE-ECTTTTTTCTTCCEEECCTT--CCEEC-TTTTTTCTTCCEEECCT--TCCEECTTTT-TT
T ss_pred eeecccccEEeccccc-ce-ecCcccccccccccccCCCc--ccccC-ceeecCCCCcCEEEeCC--cccEehHhHh-hC
Confidence 4445567777775441 22 23345778899999999752 22211 23467889999999975 3443332223 45
Q ss_pred CCCCcEEEeecCcccCcHHHHHHHHhCCCccEEecCCCCCCChHHHHHHHHhCCccceeecc
Q psy5339 90 CSQLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAKCDQVSDAGLKVIARRCYKLRYLNAR 151 (479)
Q Consensus 90 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~l~~l~~~~~~L~~L~l~ 151 (479)
|.+|+++.+.. .++..+- .....|++|+.+.+.+.. ... .....+.+|+.+.+.
T Consensus 333 C~~L~~i~ip~--sv~~I~~-~aF~~C~~L~~i~~~~~~----~~~-~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 333 CEQLERIAIPS--SVTKIPE-SAFSNCTALNNIEYSGSR----SQW-NAISTDSGLQNLPVA 386 (394)
T ss_dssp CTTCCEEEECT--TCCBCCG-GGGTTCTTCCEEEESSCH----HHH-HTCBCCCCC------
T ss_pred CCCCCEEEECc--ccCEEhH-hHhhCCCCCCEEEECCce----eeh-hhhhccCCCCEEEeC
Confidence 89999999964 2433221 223557899999997631 111 112345666666654
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=61.10 E-value=2 Score=39.17 Aligned_cols=57 Identities=14% Similarity=0.365 Sum_probs=28.4
Q ss_pred hCCCccEEeccCC--CCccHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHhhCCCCcEEeccC
Q psy5339 363 RCYKLRYLNARGC--EAVSDDAITVLARSCTRLRALDIGKCDVSDAGLRALAESCPNIKKLSLRQ 425 (479)
Q Consensus 363 ~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~ 425 (479)
.|++|+.+.+.++ ..+.+..+ ..|++|+.+.|..+ ++..+-.++. .|.+|+.+.+..
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF----~~c~~L~~i~lp~~-l~~I~~~aF~-~C~~L~~i~ip~ 342 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVF----MDCVKLSSVTLPTA-LKTIQVYAFK-NCKALSTISYPK 342 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTT----TTCTTCCEEECCTT-CCEECTTTTT-TCTTCCCCCCCT
T ss_pred cccccccccccccccceehhhhh----cCCCCCCEEEcCcc-ccEEHHHHhh-CCCCCCEEEECC
Confidence 4566666666542 12222211 24677777777543 2221222222 467777777754
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=52.08 E-value=3.7 Score=37.28 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=61.3
Q ss_pred ccchhcccCCCCCcccccccccccccccccceeccCCCCCCchhhHHHHHhcCCcccEEecccccccchhhHhhhhhcCC
Q psy5339 12 TQLLLQFLDLTDCSCIQISCLTASPTQLLLQFLDLTDCSNVDDQGLSLIVSNCPQLIYLYLRRCVKLTDIGIKYVPSFCS 91 (479)
Q Consensus 12 ~~~~L~~L~ls~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 91 (479)
.+..|+.+.+..+ +..+ ...+|..+.+|+.+.+... +.... ...+..|++|+.+.+.+ ..++..+-.. ...|.
T Consensus 238 ~~~~L~~i~lp~~-v~~I-~~~aF~~~~~l~~i~l~~~--i~~i~-~~aF~~c~~L~~i~l~~-~~i~~I~~~a-F~~c~ 310 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSI-GSFLLQNCTALKTLNFYAK--VKTVP-YLLCSGCSNLTKVVMDN-SAIETLEPRV-FMDCV 310 (379)
T ss_dssp TCSSCCEEEECTT-CCEE-CTTTTTTCTTCCEEEECCC--CSEEC-TTTTTTCTTCCEEEECC-TTCCEECTTT-TTTCT
T ss_pred CCccceEEEcCCC-ccEe-Cccccceeehhcccccccc--ceecc-ccccccccccccccccc-cccceehhhh-hcCCC
Confidence 3345566666444 2222 2345677888999998753 32211 23457889999999987 3444332222 34588
Q ss_pred CCcEEEeecCcccCcHHHHHHHHhCCCccEEecCC
Q psy5339 92 QLKELSVSDCTQVTDFGLYELAKLGATLRYLSVAK 126 (479)
Q Consensus 92 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 126 (479)
+|+++++.. .++..+-. ....|.+|+.+.+..
T Consensus 311 ~L~~i~lp~--~l~~I~~~-aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 311 KLSSVTLPT--ALKTIQVY-AFKNCKALSTISYPK 342 (379)
T ss_dssp TCCEEECCT--TCCEECTT-TTTTCTTCCCCCCCT
T ss_pred CCCEEEcCc--cccEEHHH-HhhCCCCCCEEEECC
Confidence 999999964 23332211 234567888888753
Done!